F385703

General Info

Members Datasets Scaffolds Average Seq Length
283 211 566 498

Family's Representative Sequence

Representative Sequence 3300036712|Ga0316584_0003972|Ga0316584_0003972_1966_3795
Length 609
Sequence VTCGSSISLEAGPDSVGHAPDGIGAQVRGQADALIKRHRPATIGYLIEALAPTPCDAPSPSLELLLTEHLPPSGKVSQTGMAAAAQSRCKQPGDQVPIRFPRQSSRVPMSKRVLIVDDDPAQRRILEEVIKRLGYQTRTAASGDKALDILLGPDAGTISLVLLDLVMPGTGGLEVLARLNSKPGIPPVIVETANGSIDAAINAMRAGAVDFVVKPASPERLECSIKNALRIEQLSGEITRMKKKAEGLLTFDDLIISTEPMGRVVSLGKRAAQSNIPVLIEGESGVGKELIARAIQGESERAGGPFVTVNCGAIPENLIESTLFGHEKGSFTGAHEKRIGKFQEADGGTLFLDEVGELPLDAQVKLLRALQEGEIDPVGGKRPIKVNFRLISATNRDMIQLVKDGKFREDLYYRLNVFPVWVPPLKDRLEDVPQLAMHFLSRFAAEEGKRVSSISDEAMVLLTRYAWPGNVRQLENAMFRAVVLADGSELGVSEFPQIAAHVTGYDTVVPDAPAPKPRGAFEGPALLGAENFVPRTIEVREGKGAGSIGIPAVSETGDIRPLDQIEADMIRLALGRYRGHMTEVARRLGIGRSTLYRKMQEYGLESRMG

Samples

Sample ID Description Type Environment
1 3300036712 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S_170502SBrCrA Metagenome Rhizosphere
2 3300003578 Arabidopsis root microbial communities from the University of North Carolina, USA - metaT NBMF1_36_input_d2 (Metagenome Metatranscriptome, Counting Only) Metatranscriptome Unclassified
3 3300003794 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 Metagenome Endosphere
4 3300005337 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3L metaG Metagenome Rhizosphere
5 3300005340 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG Metagenome Rhizosphere
6 3300005341 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-1 metaG Metagenome Rhizosphere
7 3300005344 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG Metagenome Rhizosphere
8 3300005353 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG Metagenome Rhizosphere
9 3300005354 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG Metagenome Rhizosphere
10 3300005356 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG Metagenome Rhizosphere
11 3300005364 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG Metagenome Rhizosphere
12 3300005435 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG Metagenome Rhizosphere
13 3300005436 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG Metagenome Rhizosphere
14 3300005455 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG Metagenome Rhizosphere
15 3300005458 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG Metagenome Rhizosphere
16 3300005468 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG Metagenome Rhizosphere
17 3300005471 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG Metagenome Rhizosphere
18 3300005518 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG Metagenome Rhizosphere
19 3300005539 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 Metagenome Rhizosphere
20 3300005543 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG Metagenome Rhizosphere
21 3300005544 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3L metaG Metagenome Rhizosphere
22 3300005545 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-2 metaG Metagenome Rhizosphere
23 3300005546 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-3 metaG Metagenome Rhizosphere
24 3300005547 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-3 metaG Metagenome Rhizosphere
25 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
26 3300005564 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG Metagenome Rhizosphere
27 3300005577 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 Metagenome Rhizosphere
28 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
29 3300005615 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-3 metaG Metagenome Rhizosphere
30 3300005616 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 Metagenome Rhizosphere
31 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
32 3300005844 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 Metagenome Rhizosphere
33 3300005937 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1 Metagenome Rhizosphere
34 3300005983 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S2T1R1 Metagenome Rhizosphere
35 3300006048 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-3 Metagenome Endosphere
36 3300006051 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 Metagenome Endosphere
37 3300006175 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG Metagenome Rhizosphere
38 3300006177 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-2 Metagenome Endosphere
39 3300006178 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 Metagenome Endosphere
40 3300006195 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 Metagenome Endosphere
41 3300006358 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 Metagenome Rhizosphere
42 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
43 3300006846 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 Metagenome Rhizosphere
44 3300006847 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 Metagenome Rhizosphere
45 3300006852 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 Metagenome Rhizosphere
46 3300006880 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 Metagenome Rhizosphere
47 3300006914 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5 Metagenome Rhizosphere
48 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
49 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
50 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
51 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
52 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
53 3300009553 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG Metagenome Rhizosphere
54 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
55 3300013100 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6-5 metaG Metagenome Rhizosphere
56 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
57 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
58 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
59 3300014326 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG Metagenome Rhizosphere
60 3300014968 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG Metagenome Rhizosphere
61 3300025292 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mLB_r2 (SPAdes) (version 2) Metagenome Endosphere
62 3300025298 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 (SPAdes) (version 2) Metagenome Endosphere
63 3300025304 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
64 3300025906 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
65 3300025907 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
66 3300025912 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
67 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
68 3300025914 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
69 3300025915 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
70 3300025920 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
71 3300025922 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
72 3300025923 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
73 3300025926 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
74 3300025928 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
75 3300025929 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
76 3300025933 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
77 3300025937 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
78 3300025940 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
79 3300025942 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes) (version 2) Metagenome Rhizosphere
80 3300025945 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
81 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
82 3300026041 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes) (version 2) Metagenome Rhizosphere
83 3300026067 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
84 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
85 3300026089 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes) (version 2) Metagenome Rhizosphere
86 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
87 3300026118 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes) (version 2) Metagenome Rhizosphere
88 3300027866 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-3 (SPAdes) (version 2) Metagenome Endosphere
89 3300027907 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes) (version 3) Metagenome Rhizosphere
90 3300028381 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) Metagenome Rhizosphere
91 3300028573 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-20-23 metaG Metagenome Rhizosphere
92 3300028800 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG Metagenome Rhizosphere
93 3300031239 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-24 metaG Metagenome Rhizosphere
94 3300031241 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-14-20 metaG Metagenome Rhizosphere
95 3300031247 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-25 metaG Metagenome Rhizosphere
96 3300031249 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-19 metaG Metagenome Rhizosphere
97 3300031250 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-23 metaG Metagenome Rhizosphere
98 3300031251 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-21 metaG Metagenome Rhizosphere
99 3300031344 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-5-22 metaG Metagenome Rhizosphere
100 3300031595 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-23 metaG Metagenome Rhizosphere
101 3300031727 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_050615r3r5 Metagenome Rhizosphere
102 3300031824 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-2 Metagenome Rhizosphere
103 3300031911 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1 Metagenome Rhizosphere
104 3300032004 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3 Metagenome Rhizosphere
105 3300032126 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-2 Metagenome Rhizosphere
106 3300035086 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_4 Metagenome Rhizosphere
107 3300035091 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_N_4 Metagenome Rhizosphere
108 3300035117 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_N_1 Metagenome Rhizosphere
109 3300035119 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_N_4 Metagenome Rhizosphere
110 3300035172 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_N_3 Metagenome Rhizosphere
111 3300035691 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_NoN_4 Metagenome Rhizosphere
112 3300035692 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_11 Metagenome Rhizosphere
113 3300035724 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_1 Metagenome Rhizosphere
114 3300036401 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_16 Metagenome Rhizosphere
115 3300036647 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J_170502JArCrA Metagenome Rhizosphere
116 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
117 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
118 3300038735 Seagrass microbial communities from Seahorse Key, FL, USA - SH0319 Metagenome Unclassified
119 3300038742 Seagrass microbial communities from Seahorse Key, FL, USA - SH0818 Metagenome Unclassified
120 3300044842 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA2R Metagenome Rhizosphere
121 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
122 3300046455 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-307-CL1_26_33 rhizosphere Metagenome Rhizosphere
123 3300046477 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL1_23_5 rhizosphere Metagenome Rhizosphere
124 3300046491 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co2_41_23 rhizosphere Metagenome Rhizosphere
125 3300046535 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL1_28_16 rhizosphere Metagenome Rhizosphere
126 3300046557 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL1_25_34 rhizosphere Metagenome Rhizosphere
127 3300046558 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co3_6_53 rhizosphere Metagenome Rhizosphere
128 3300048905 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1c N15 Metagenome Rhizoplane
129 3300048907 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2c N15 Metagenome Rhizoplane
130 3300048908 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2d N15 Metagenome Rhizoplane
131 3300048909 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3c N15 Metagenome Rhizoplane
132 3300048910 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3d N15 Metagenome Rhizoplane
133 3300048911 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8v unlabeled Metagenome Rhizoplane
134 3300048912 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8w unlabeled Metagenome Rhizoplane
135 3300048913 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4c N15 Metagenome Rhizoplane
136 3300048914 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4d N15 Metagenome Rhizoplane
137 3300048915 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5c N15 Metagenome Rhizoplane
138 3300048916 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5d N15 Metagenome Rhizoplane
139 3300048917 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6c N15 Metagenome Rhizoplane
140 3300048918 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6d N15 Metagenome Rhizoplane
141 3300048919 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_7x unlabeled Metagenome Unclassified
142 3300048925 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8x unlabeled Metagenome Unclassified
143 3300048926 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8y unlabeled Metagenome Unclassified
144 3300048928 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_5e N15 Metagenome Unclassified
145 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
146 3300049573 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_01 Metagenome Rhizosphere
147 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
148 3300049575 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_03 Metagenome Rhizosphere
149 3300049576 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_01 Metagenome Rhizosphere
150 3300049577 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_02 Metagenome Rhizosphere
151 3300049580 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_01 Metagenome Rhizosphere
152 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
153 3300049582 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_03 Metagenome Rhizosphere
154 3300049583 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_01 Metagenome Rhizosphere
155 3300049586 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 Metagenome Rhizosphere
156 3300049587 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_02 Metagenome Rhizosphere
157 3300049589 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_01 Metagenome Rhizosphere
158 3300049590 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_02 Metagenome Rhizosphere
159 3300049592 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_01 Metagenome Rhizosphere
160 3300049741 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_01 Metagenome Rhizosphere
161 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
162 3300049743 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_03 Metagenome Rhizosphere
163 3300049744 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_02 Metagenome Rhizosphere
164 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
165 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
166 3300049824 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_03 Metagenome Rhizosphere
167 3300050490 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-3 re-annotation Metagenome Endosphere
168 3300050491 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 re-annotation Metagenome Endosphere
169 3300050493 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 re-annotation Metagenome Endosphere
170 3300050494 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 re-annotation Metagenome Endosphere
171 3300050495 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-3 re-annotation Metagenome Endosphere
172 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
173 3300050508 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 re-annotation Metagenome Rhizosphere
174 3300050509 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 re-annotation Metagenome Rhizosphere
175 3300050510 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 re-annotation Metagenome Rhizosphere
176 3300050511 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation Metagenome Rhizosphere
177 3300050513 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 re-annotation Metagenome Rhizosphere
178 3300050514 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5 re-annotation Metagenome Rhizosphere
179 3300053078 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL1_27_10 rhizosphere Metagenome Rhizosphere
180 3300053084 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-234-CL2_65_22 rhizosphere Metagenome Rhizosphere
181 3300053088 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co1_37_5 endosphere Metagenome Endosphere
182 3300053093 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co2_62_24 endosphere Metagenome Endosphere
183 3300053103 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co1_30_3 endosphere Metagenome Endosphere
184 3300053104 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co2_41_23 endosphere Metagenome Endosphere
185 3300053117 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co2_62_25 endosphere Metagenome Endosphere
186 3300053139 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co1_23_3 endosphere Metagenome Endosphere
187 3300054114 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_03 Metagenome Rhizosphere
188 3300060353 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_01 Metagenome Rhizosphere
189 3300061734 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_03 (v2) (version 2) Metagenome Rhizosphere
190 2523231067 Pleomorphomonas oryzae DSM 16300 Isolate Unclassified
191 2545555834 Methylobacterium sp. WSM2598 Isolate Nodule
192 2595698237 Methylobacterium sp. UNCCL125 Isolate Unclassified
193 2643221663 Brevundimonas sp. Root1279 Isolate Unclassified
194 2643221699 Brevundimonas sp. Root1423 Isolate Unclassified
195 2738541281 Methylobacterium sp. GV094 Isolate Unclassified
196 2738543031 Pleomorphomonas sp. CF100 Isolate Unclassified
197 2738543032 Methylobacterium sp. GV104 Isolate Unclassified
198 2829745981 Methylorubrum rhodinum DSM 2163 Isolate Rhizosphere
199 2861691609 Methylorubrum thiocyanatum DSM 11490 Isolate Rhizosphere
200 2889306138 Methylobacterium sp. PvR107 Isolate Rhizosphere
201 2902330777 Methylobacterium sp. 2A Isolate Unclassified
202 2902405164 Methylobacterium sp. P1-11 Isolate Unclassified
203 2909042592 Labrys sp. LIt4 Isolate Nodule
204 2917554339 Chthonobacter rhizosphaerae yh7-1 Isolate Rhizosphere
205 2928125067 Methylobacterium sp. 1973 Isolate Unclassified
206 2928972540 Brevundimonas sp. 1080 Isolate Rhizosphere
207 2977240413 Brevundimonas vesicularis SORGH_AS 431 Isolate Unclassified
208 3003665799 Methylobacterium aquaticum BG2 Isolate Unclassified
209 641522639 Methylobacterium sp. 4-46 Isolate Nodule
210 643348564 Methylobacterium nodulans ORS 2060 Isolate Nodule
211 8002060224 Methylocystis sp. Sn-Cys Isolate Unclassified

Type Distribution

Type Percentage (%)
Metagenomes 91.87
Metatranscriptomes 0.35
Isolates 7.77

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 9.19
Nodule 1.41
Rhizoplane 5.3
Rhizosphere 77.03
Stem 0
Stem Tuber 0
Unclassified 0.71

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0316584_0003972 3300036712 Bacteria 9727
2 Ga0006562J51391_1167918 3300003578 Bacteria 1850
3 Ga0055531_10005523 3300003794 Bacteria 7383
4 Ga0070682_100024225 3300005337 Bacteria 3610
5 Ga0070689_100003088 3300005340 Bacteria 10982
6 Ga0070691_10033443 3300005341 Bacteria 2419
7 Ga0070661_100003574 3300005344 Bacteria 10700
8 Ga0070669_100010386 3300005353 Bacteria 6611
9 Ga0070675_100034402 3300005354 Bacteria 4112
10 Ga0070674_100002336 3300005356 Bacteria 10469
11 Ga0070673_100033208 3300005364 Bacteria 3893
12 Ga0070714_100020056 3300005435 Bacteria 5454
13 Ga0070713_100000002 3300005436 Bacteria 245989
14 Ga0070663_100007572 3300005455 Bacteria 6621
15 Ga0070681_10007438 3300005458 Bacteria 10704
16 Ga0070681_10007760 3300005458 Bacteria 10491
17 Ga0070707_100007960 3300005468 Bacteria 9843
18 Ga0070698_100062178 3300005471 Bacteria 3767
19 Ga0070699_100104862 3300005518 Bacteria 2480
20 Ga0068853_100033467 3300005539 Bacteria 4361
21 Ga0068853_100062395 3300005539 Bacteria 3225
22 Ga0070672_100012339 3300005543 Bacteria 5995
23 Ga0070686_100095552 3300005544 Bacteria 1997
24 Ga0070695_100001088 3300005545 Bacteria 14865
25 Ga0070695_100028119 3300005545 Bacteria 3487
26 Ga0070695_100071383 3300005545 Bacteria 2274
27 Ga0070696_100009933 3300005546 Bacteria 6367
28 Ga0070693_100016025 3300005547 Bacteria 3872
29 Ga0070665_100091628 3300005548 Bacteria 3044
30 Ga0070664_100020040 3300005564 Bacteria 5506
31 Ga0070664_100112465 3300005564 Bacteria 2378
32 Ga0068857_100000722 3300005577 Bacteria 24631
33 Ga0068857_100091077 3300005577 Bacteria 2729
34 Ga0068856_100000312 3300005614 Bacteria 53339
35 Ga0068856_100001945 3300005614 Bacteria 21510
36 Ga0070702_100027639 3300005615 Bacteria 3064
37 Ga0068852_100036121 3300005616 Bacteria 4131
38 Ga0068860_100031679 3300005843 Bacteria 5083
39 Ga0068862_100017614 3300005844 Bacteria 5947
40 Ga0081455_10000042 3300005937 Bacteria 133329
41 Ga0081455_10003103 3300005937 Bacteria 19331
42 Ga0081540_1000024 3300005983 Bacteria 158868
43 Ga0081540_1044220 3300005983 Bacteria 2275
44 Ga0075363_100006153 3300006048 Bacteria 5424
45 Ga0075363_100012262 3300006048 Bacteria 4127
46 Ga0075364_10001556 3300006051 Bacteria 12543
47 Ga0075364_10002581 3300006051 Bacteria 10152
48 Ga0070712_100000045 3300006175 Bacteria 66187
49 Ga0075362_10000893 3300006177 Bacteria 9054
50 Ga0075367_10012632 3300006178 Bacteria 4513
51 Ga0075366_10003575 3300006195 Bacteria 8226
52 Ga0068871_100097090 3300006358 Bacteria 2462
53 Ga0075428_100009290 3300006844 Bacteria 10901
54 Ga0075428_100050819 3300006844 Bacteria 4546
55 Ga0075430_100065980 3300006846 Bacteria 3040
56 Ga0075431_100000519 3300006847 Bacteria 32288
57 Ga0075431_100000736 3300006847 Bacteria 28248
58 Ga0075431_100008710 3300006847 Bacteria 10165
59 Ga0075431_100027362 3300006847 Bacteria 5850
60 Ga0075433_10094524 3300006852 Bacteria 2646
61 Ga0075429_100025567 3300006880 Bacteria 5125
62 Ga0075429_100161789 3300006880 Bacteria 1960
63 Ga0075436_100000255 3300006914 Bacteria 33272
64 Ga0105240_10004492 3300009093 Bacteria 21215
65 Ga0105240_10192596 3300009093 Bacteria 2396
66 Ga0105240_10363536 3300009093 Bacteria 1638
67 Ga0105240_10366368 3300009093 Bacteria 1631
68 Ga0111539_10003352 3300009094 Bacteria 21158
69 Ga0111539_10004045 3300009094 Bacteria 19247
70 Ga0111539_10034132 3300009094 Bacteria 6172
71 Ga0111539_10091720 3300009094 Bacteria 3569
72 Ga0114129_10005469 3300009147 Bacteria 17954
73 Ga0114129_10024112 3300009147 Bacteria 8621
74 Ga0114129_10057618 3300009147 Bacteria 5436
75 Ga0114129_10308611 3300009147 Bacteria 2107
76 Ga0114129_10377709 3300009147 Bacteria 1872
77 Ga0105237_10001328 3300009545 Bacteria 32811
78 Ga0105238_10001436 3300009551 Bacteria 23918
79 Ga0105249_10140607 3300009553 Bacteria 2314
80 Ga0105239_10190033 3300010375 Bacteria 2299
81 Ga0157373_10005154 3300013100 Bacteria 9825
82 Ga0157369_10001118 3300013105 Bacteria 33541
83 Ga0157369_10016286 3300013105 Bacteria 8368
84 Ga0157372_10003118 3300013307 Bacteria 17875
85 Ga0157372_10009220 3300013307 Bacteria 10491
86 Ga0157375_10018116 3300013308 Bacteria 6380
87 Ga0157380_10140843 3300014326 Bacteria 2072
88 Ga0157379_10010346 3300014968 Bacteria 8126
89 Ga0157379_10037494 3300014968 Bacteria 4323
90 Ga0157379_10043536 3300014968 Bacteria 4008
91 Ga0209676_1000182 3300025292 Bacteria 146373
92 Ga0209050_1005142 3300025298 Bacteria 8390
93 Ga0209257_1000484 3300025304 Bacteria 72044
94 Ga0207699_10000133 3300025906 Bacteria 50958
95 Ga0207645_10012101 3300025907 Bacteria 5864
96 Ga0207645_10067450 3300025907 Bacteria 2287
97 Ga0207707_10095909 3300025912 Bacteria 2592
98 Ga0207695_10174605 3300025913 Bacteria 2072
99 Ga0207671_10050576 3300025914 Bacteria 3077
100 Ga0207693_10000035 3300025915 Bacteria 110713
101 Ga0207649_10000790 3300025920 Bacteria 20471
102 Ga0207646_10009151 3300025922 Bacteria 9828
103 Ga0207681_10093658 3300025923 Bacteria 2151
104 Ga0207659_10024555 3300025926 Bacteria 4040
105 Ga0207700_10000037 3300025928 Bacteria 115488
106 Ga0207664_10016055 3300025929 Bacteria 5454
107 Ga0207706_10061532 3300025933 Bacteria 3306
108 Ga0207669_10009379 3300025937 Bacteria 4657
109 Ga0207691_10001226 3300025940 Bacteria 25547
110 Ga0207689_10075478 3300025942 Bacteria 2771
111 Ga0207679_10040475 3300025945 Bacteria 3336
112 Ga0207667_10018343 3300025949 Bacteria 7851
113 Ga0207639_10006879 3300026041 Bacteria 7747
114 Ga0207639_10009349 3300026041 Bacteria 6760
115 Ga0207678_10000101 3300026067 Bacteria 70507
116 Ga0207702_10000007 3300026078 Bacteria 332551
117 Ga0207702_10000012 3300026078 Bacteria 269770
118 Ga0207702_10002115 3300026078 Bacteria 19134
119 Ga0207648_10006232 3300026089 Bacteria 11876
120 Ga0207648_10116463 3300026089 Bacteria 2348
121 Ga0207674_10000107 3300026116 Bacteria 95635
122 Ga0207674_10119016 3300026116 Bacteria 2610
123 Ga0207675_100140669 3300026118 Bacteria 2293
124 Ga0209813_10000600 3300027866 Bacteria 8390
125 Ga0209813_10001748 3300027866 Bacteria 4893
126 Ga0207428_10011289 3300027907 Bacteria 7911
127 Ga0268264_10255970 3300028381 Bacteria 1628
128 Ga0265334_10006007 3300028573 Bacteria 5272
129 Ga0265338_10031484 3300028800 Bacteria 5200
130 Ga0265338_10065295 3300028800 Bacteria 3158
131 Ga0265328_10000290 3300031239 Bacteria 23522
132 Ga0265325_10000079 3300031241 Bacteria 67833
133 Ga0265325_10004280 3300031241 Bacteria 9053
134 Ga0265340_10000139 3300031247 Bacteria 36402
135 Ga0265339_10016075 3300031249 Bacteria 4470
136 Ga0265331_10000009 3300031250 Bacteria 314950
137 Ga0265331_10000181 3300031250 Bacteria 77026
138 Ga0265331_10000193 3300031250 Bacteria 75140
139 Ga0265331_10022134 3300031250 Bacteria 3246
140 Ga0265327_10000036 3300031251 Bacteria 312827
141 Ga0265316_10003200 3300031344 Bacteria 16640
142 Ga0265313_10003197 3300031595 Bacteria 13487
143 Ga0265313_10022409 3300031595 Bacteria 3426
144 Ga0316576_10030253 3300031727 Bacteria 3833
145 Ga0307413_10018603 3300031824 Bacteria 3651
146 Ga0307412_10004345 3300031911 Bacteria 7903
147 Ga0307414_10010671 3300032004 Bacteria 5347
148 Ga0307415_100079870 3300032126 Bacteria 2332
149 Ga0373934_0047277 3300035086 Bacteria 1702
150 Ga0373951_0006476 3300035091 Bacteria 2679
151 Ga0373953_0034900 3300035117 Bacteria 1974
152 Ga0373956_0007342 3300035119 Bacteria 4437
153 Ga0373955_0015567 3300035172 Bacteria 3726
154 Ga0373931_0000310 3300035691 Bacteria 20591
155 Ga0373935_0080728 3300035692 Bacteria 2113
156 Ga0373933_0133136 3300035724 Bacteria 1564
157 Ga0373937_0016020 3300036401 Bacteria 6648
158 Ga0316582_0097088 3300036647 Bacteria 1947
159 Ga0395900_0072589 3300037418 Bacteria 3538
160 Ga0395898_0025067 3300037466 Bacteria 6013
161 Ga0400485_11109 3300038735 Unclassified 1987
162 Ga0400486_02705 3300038742 Unclassified 2829
163 Ga0466957_0042485 3300044842 Bacteria 2751
164 Ga0451576_0002899 3300045051 Bacteria 24471
165 Ga0451576_0019781 3300045051 Bacteria 7346
166 Ga0495603_0030779 3300046455 Bacteria 3232
167 Ga0495664_0031251 3300046477 Bacteria 3121
168 Ga0495584_0041498 3300046491 Bacteria 2323
169 Ga0495586_0048238 3300046535 Bacteria 2301
170 Ga0495622_0007319 3300046557 Bacteria 5124
171 Ga0495633_0007109 3300046558 Bacteria 6505
172 Ga0496102_0043857 3300048905 Bacteria 4057
173 Ga0496104_0005485 3300048907 Bacteria 11109
174 Ga0496105_0005119 3300048908 Bacteria 9939
175 Ga0496106_0006120 3300048909 Bacteria 8900
176 Ga0496106_0082223 3300048909 Bacteria 2475
177 Ga0496107_0001680 3300048910 Bacteria 13846
178 Ga0496108_0002802 3300048911 Bacteria 13977
179 Ga0496109_0001582 3300048912 Bacteria 19002
180 Ga0496109_0021052 3300048912 Bacteria 5766
181 Ga0496110_0012214 3300048913 Bacteria 7057
182 Ga0496111_0000898 3300048914 Bacteria 16203
183 Ga0496112_0022983 3300048915 Bacteria 5950
184 Ga0496113_0010858 3300048916 Bacteria 6043
185 Ga0496114_0075811 3300048917 Bacteria 2833
186 Ga0496115_0006040 3300048918 Bacteria 8843
187 Ga0496116_0011601 3300048919 Bacteria 7273
188 Ga0496122_0029255 3300048925 Bacteria 4651
189 Ga0496123_0001192 3300048926 Bacteria 38220
190 Ga0496125_0001862 3300048928 Bacteria 29008
191 Ga0501034_0000031 3300049571 Bacteria 244022
192 Ga0501037_0001066 3300049573 Bacteria 20347
193 Ga0501038_0035811 3300049574 Bacteria 4357
194 Ga0501039_0000538 3300049575 Bacteria 27508
195 Ga0501040_0003828 3300049576 Bacteria 9765
196 Ga0501040_0149640 3300049576 Bacteria 1646
197 Ga0501041_0006787 3300049577 Bacteria 6710
198 Ga0501046_0000011 3300049580 Bacteria 326457
199 Ga0501046_0011702 3300049580 Bacteria 7494
200 Ga0501046_0014098 3300049580 Bacteria 6750
201 Ga0501046_0119534 3300049580 Bacteria 2006
202 Ga0501047_0000175 3300049581 Bacteria 78925
203 Ga0501048_0001873 3300049582 Bacteria 15964
204 Ga0501048_0062907 3300049582 Bacteria 2626
205 Ga0501048_0130561 3300049582 Bacteria 1776
206 Ga0501067_0000475 3300049583 Bacteria 21843
207 Ga0501070_0002126 3300049586 Bacteria 17384
208 Ga0501070_0079141 3300049586 Bacteria 2720
209 Ga0501071_0055618 3300049587 Bacteria 2857
210 Ga0501071_0098111 3300049587 Bacteria 2158
211 Ga0501073_0033505 3300049589 Bacteria 3658
212 Ga0501074_0009514 3300049590 Bacteria 7059
213 Ga0501076_0001423 3300049592 Bacteria 16052
214 Ga0501079_0009848 3300049741 Bacteria 7251
215 Ga0501080_0000020 3300049742 Bacteria 91998
216 Ga0501081_0002400 3300049743 Bacteria 11806
217 Ga0501081_0006581 3300049743 Bacteria 7553
218 Ga0501083_0044332 3300049744 Bacteria 3011
219 Ga0501035_0000054 3300049822 Bacteria 142023
220 Ga0501044_0000013 3300049823 Bacteria 248795
221 Ga0501044_0111221 3300049823 Bacteria 2747
222 Ga0501044_0111650 3300049823 Bacteria 2741
223 Ga0501045_0002754 3300049824 Bacteria 12003
224 nmdc:mga03n38_14497_c1 3300050490 Bacteria 3022
225 nmdc:mga03n38_2574_c1 3300050490 Bacteria 5639
226 nmdc:mga00v17_3259_c1 3300050491 Bacteria 8365
227 nmdc:mga00v17_89290_c1 3300050491 Bacteria 1934
228 nmdc:mga0k408_31787_c1 3300050493 Bacteria 3016
229 nmdc:mga06z11_2900_c1 3300050494 Bacteria 6591
230 nmdc:mga04h51_2193_c1 3300050495 Bacteria 4587
231 nmdc:mga05p37_102130_c1 3300050507 Bacteria 3531
232 nmdc:mga05p37_12963_c1 3300050507 Bacteria 9972
233 nmdc:mga05p37_65712_c1 3300050507 Bacteria 4462
234 nmdc:mga09592_11165_c1 3300050508 Bacteria 7309
235 nmdc:mga09592_24151_c1 3300050508 Bacteria 5026
236 nmdc:mga0qj67_11028_c2 3300050509 Bacteria 6047
237 nmdc:mga0qj67_56761_c1 3300050509 Bacteria 3104
238 nmdc:mga0qj67_77507_c1 3300050509 Bacteria 2659
239 nmdc:mga06r32_135765_c1 3300050510 Bacteria 2435
240 nmdc:mga06r32_1698_c1 3300050510 Bacteria 19847
241 nmdc:mga06r32_19420_c1 3300050510 Bacteria 6237
242 nmdc:mga06r32_43593_c1 3300050510 Bacteria 4269
243 nmdc:mga08y16_14995_c1 3300050511 Bacteria 8152
244 nmdc:mga08y16_76918_c1 3300050511 Bacteria 3479
245 nmdc:mga0rr50_40169_c1 3300050513 Bacteria 3400
246 nmdc:mga08x19_38_c1 3300050514 Bacteria 159604
247 Ga0495612_0009717 3300053078 Bacteria 3897
248 Ga0495595_0046221 3300053084 Bacteria 2004
249 Ga0500644_0033768 3300053088 Bacteria 1645
250 Ga0500651_0014927 3300053093 Bacteria 4760
251 Ga0500555_001424 3300053103 Bacteria 7358
252 Ga0500556_0000385 3300053104 Bacteria 32296
253 Ga0500593_000027 3300053117 Bacteria 51606
254 Ga0500568_0000004 3300053139 Bacteria 621666
255 Ga0501084_0005049 3300054114 Bacteria 10796
256 Ga0501084_0009073 3300054114 Bacteria 8229
257 Ga0501084_0062198 3300054114 Bacteria 3125
258 Ga0501082_0016913 3300060353 Bacteria 6280
259 Ga0501082_0131320 3300060353 Bacteria 2173
260 Ga0530510_0030395 3300061734 Bacteria 3880
261 Ga0530510_0047494 3300061734 Bacteria 3102
262 2523470087 2523231067 Bacteria 5230452
263 2545678285 2545555834 Bacteria 8130841
264 2596373248 2595698237 Bacteria 6712432
265 2644353741 2643221663 Bacteria 3425771
266 2644548494 2643221699 Bacteria 5731501
267 2738744143 2738541281 Bacteria 5112672
268 2739350816 2738543031 Bacteria 5769731
269 2739353373 2738543032 Bacteria 5115625
270 2829746225 2829745981 Bacteria 5406054
271 2861693264 2861691609 Bacteria 5628931
272 2889307684 2889306138 Bacteria 6358934
273 2902333365 2902330777 Bacteria 6395352
274 2902407049 2902405164 Bacteria 6784948
275 2909046837 2909042592 Bacteria 6499737
276 2917556542 2917554339 Bacteria 4987857
277 2928127229 2928125067 Bacteria 5937560
278 2928972735 2928972540 Bacteria 3058286
279 2977242516 2977240413 Bacteria 3191065
280 3003666758 3003665799 Bacteria 7279786
281 641643337 641522639 Bacteria 7737025
282 643597996 643348564 Bacteria 8839022
283 8002060345 8002060224 Bacteria 4026565
284 Ga0316584_0003972
285 Ga0006562J51391_1167918
286 Ga0055531_10005523
287 Ga0070682_100024225
288 Ga0070689_100003088
289 Ga0070691_10033443
290 Ga0070661_100003574
291 Ga0070669_100010386
292 Ga0070675_100034402
293 Ga0070674_100002336
294 Ga0070673_100033208
295 Ga0070714_100020056
296 Ga0070713_100000002
297 Ga0070663_100007572
298 Ga0070681_10007438
299 Ga0070681_10007760
300 Ga0070707_100007960
301 Ga0070698_100062178
302 Ga0070699_100104862
303 Ga0068853_100033467
304 Ga0068853_100062395
305 Ga0070672_100012339
306 Ga0070686_100095552
307 Ga0070695_100001088
308 Ga0070695_100028119
309 Ga0070695_100071383
310 Ga0070696_100009933
311 Ga0070693_100016025
312 Ga0070665_100091628
313 Ga0070664_100020040
314 Ga0070664_100112465
315 Ga0068857_100000722
316 Ga0068857_100091077
317 Ga0068856_100000312
318 Ga0068856_100001945
319 Ga0070702_100027639
320 Ga0068852_100036121
321 Ga0068860_100031679
322 Ga0068862_100017614
323 Ga0081455_10000042
324 Ga0081455_10003103
325 Ga0081540_1000024
326 Ga0081540_1044220
327 Ga0075363_100006153
328 Ga0075363_100012262
329 Ga0075364_10001556
330 Ga0075364_10002581
331 Ga0070712_100000045
332 Ga0075362_10000893
333 Ga0075367_10012632
334 Ga0075366_10003575
335 Ga0068871_100097090
336 Ga0075428_100009290
337 Ga0075428_100050819
338 Ga0075430_100065980
339 Ga0075431_100000519
340 Ga0075431_100000736
341 Ga0075431_100008710
342 Ga0075431_100027362
343 Ga0075433_10094524
344 Ga0075429_100025567
345 Ga0075429_100161789
346 Ga0075436_100000255
347 Ga0105240_10004492
348 Ga0105240_10192596
349 Ga0105240_10363536
350 Ga0105240_10366368
351 Ga0111539_10003352
352 Ga0111539_10004045
353 Ga0111539_10034132
354 Ga0111539_10091720
355 Ga0114129_10005469
356 Ga0114129_10024112
357 Ga0114129_10057618
358 Ga0114129_10308611
359 Ga0114129_10377709
360 Ga0105237_10001328
361 Ga0105238_10001436
362 Ga0105249_10140607
363 Ga0105239_10190033
364 Ga0157373_10005154
365 Ga0157369_10001118
366 Ga0157369_10016286
367 Ga0157372_10003118
368 Ga0157372_10009220
369 Ga0157375_10018116
370 Ga0157380_10140843
371 Ga0157379_10010346
372 Ga0157379_10037494
373 Ga0157379_10043536
374 Ga0209676_1000182
375 Ga0209050_1005142
376 Ga0209257_1000484
377 Ga0207699_10000133
378 Ga0207645_10012101
379 Ga0207645_10067450
380 Ga0207707_10095909
381 Ga0207695_10174605
382 Ga0207671_10050576
383 Ga0207693_10000035
384 Ga0207649_10000790
385 Ga0207646_10009151
386 Ga0207681_10093658
387 Ga0207659_10024555
388 Ga0207700_10000037
389 Ga0207664_10016055
390 Ga0207706_10061532
391 Ga0207669_10009379
392 Ga0207691_10001226
393 Ga0207689_10075478
394 Ga0207679_10040475
395 Ga0207667_10018343
396 Ga0207639_10006879
397 Ga0207639_10009349
398 Ga0207678_10000101
399 Ga0207702_10000007
400 Ga0207702_10000012
401 Ga0207702_10002115
402 Ga0207648_10006232
403 Ga0207648_10116463
404 Ga0207674_10000107
405 Ga0207674_10119016
406 Ga0207675_100140669
407 Ga0209813_10000600
408 Ga0209813_10001748
409 Ga0207428_10011289
410 Ga0268264_10255970
411 Ga0265334_10006007
412 Ga0265338_10031484
413 Ga0265338_10065295
414 Ga0265328_10000290
415 Ga0265325_10000079
416 Ga0265325_10004280
417 Ga0265340_10000139
418 Ga0265339_10016075
419 Ga0265331_10000009
420 Ga0265331_10000181
421 Ga0265331_10000193
422 Ga0265331_10022134
423 Ga0265327_10000036
424 Ga0265316_10003200
425 Ga0265313_10003197
426 Ga0265313_10022409
427 Ga0316576_10030253
428 Ga0307413_10018603
429 Ga0307412_10004345
430 Ga0307414_10010671
431 Ga0307415_100079870
432 Ga0373934_0047277
433 Ga0373951_0006476
434 Ga0373953_0034900
435 Ga0373956_0007342
436 Ga0373955_0015567
437 Ga0373931_0000310
438 Ga0373935_0080728
439 Ga0373933_0133136
440 Ga0373937_0016020
441 Ga0316582_0097088
442 Ga0395900_0072589
443 Ga0395898_0025067
444 Ga0400485_11109
445 Ga0400486_02705
446 Ga0466957_0042485
447 Ga0451576_0002899
448 Ga0451576_0019781
449 Ga0495603_0030779
450 Ga0495664_0031251
451 Ga0495584_0041498
452 Ga0495586_0048238
453 Ga0495622_0007319
454 Ga0495633_0007109
455 Ga0496102_0043857
456 Ga0496104_0005485
457 Ga0496105_0005119
458 Ga0496106_0006120
459 Ga0496106_0082223
460 Ga0496107_0001680
461 Ga0496108_0002802
462 Ga0496109_0001582
463 Ga0496109_0021052
464 Ga0496110_0012214
465 Ga0496111_0000898
466 Ga0496112_0022983
467 Ga0496113_0010858
468 Ga0496114_0075811
469 Ga0496115_0006040
470 Ga0496116_0011601
471 Ga0496122_0029255
472 Ga0496123_0001192
473 Ga0496125_0001862
474 Ga0501034_0000031
475 Ga0501037_0001066
476 Ga0501038_0035811
477 Ga0501039_0000538
478 Ga0501040_0003828
479 Ga0501040_0149640
480 Ga0501041_0006787
481 Ga0501046_0000011
482 Ga0501046_0011702
483 Ga0501046_0014098
484 Ga0501046_0119534
485 Ga0501047_0000175
486 Ga0501048_0001873
487 Ga0501048_0062907
488 Ga0501048_0130561
489 Ga0501067_0000475
490 Ga0501070_0002126
491 Ga0501070_0079141
492 Ga0501071_0055618
493 Ga0501071_0098111
494 Ga0501073_0033505
495 Ga0501074_0009514
496 Ga0501076_0001423
497 Ga0501079_0009848
498 Ga0501080_0000020
499 Ga0501081_0002400
500 Ga0501081_0006581
501 Ga0501083_0044332
502 Ga0501035_0000054
503 Ga0501044_0000013
504 Ga0501044_0111221
505 Ga0501044_0111650
506 Ga0501045_0002754
507 nmdc:mga03n38_14497_c1
508 nmdc:mga03n38_2574_c1
509 nmdc:mga00v17_3259_c1
510 nmdc:mga00v17_89290_c1
511 nmdc:mga0k408_31787_c1
512 nmdc:mga06z11_2900_c1
513 nmdc:mga04h51_2193_c1
514 nmdc:mga05p37_102130_c1
515 nmdc:mga05p37_12963_c1
516 nmdc:mga05p37_65712_c1
517 nmdc:mga09592_11165_c1
518 nmdc:mga09592_24151_c1
519 nmdc:mga0qj67_11028_c2
520 nmdc:mga0qj67_56761_c1
521 nmdc:mga0qj67_77507_c1
522 nmdc:mga06r32_135765_c1
523 nmdc:mga06r32_1698_c1
524 nmdc:mga06r32_19420_c1
525 nmdc:mga06r32_43593_c1
526 nmdc:mga08y16_14995_c1
527 nmdc:mga08y16_76918_c1
528 nmdc:mga0rr50_40169_c1
529 nmdc:mga08x19_38_c1
530 Ga0495612_0009717
531 Ga0495595_0046221
532 Ga0500644_0033768
533 Ga0500651_0014927
534 Ga0500555_001424
535 Ga0500556_0000385
536 Ga0500593_000027
537 Ga0500568_0000004
538 Ga0501084_0005049
539 Ga0501084_0009073
540 Ga0501084_0062198
541 Ga0501082_0016913
542 Ga0501082_0131320
543 Ga0530510_0030395
544 Ga0530510_0047494
545 2523470087
546 2545678285
547 2596373248
548 2644353741
549 2644548494
550 2738744143
551 2739350816
552 2739353373
553 2829746225
554 2861693264
555 2889307684
556 2902333365
557 2902407049
558 2909046837
559 2917556542
560 2928127229
561 2928972735
562 2977242516
563 3003666758
564 641643337
565 643597996
566 8002060345

MSA Aligner

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF00158

Sigma54_activat

Sigma-54 interaction domain

254

421

0.98

PF02954

HTH_8

Bacterial regulatory protein, Fis family

561

602

0.98

PF00072

Response_reg

Response regulator receiver domain

113

226

0.97

PF14532

Sigma54_activ_2

Sigma-54 interaction domain

258

425

0.88

PF07728

AAA_5

AAA domain (dynein-related subfamily)

277

415

0.86

Structural Annotation

Top 5 Hits

ID Description Score Start End
1nxt-assembly1.cif.gz_A-2 micarec ph 4.0 0.9722 3 121
4kny-assembly1.cif.gz_A crystal structure of the response regulator kdpe complexed to dna in an active-like conformation 0.9719 1 120
2a9r-assembly1.cif.gz_A-2 rr02-rec phosphate in the active site 0.9711 3 121
4qhs-assembly1.cif.gz_F crystal structure of aaa+sigma 54 activator domain of the flagellar regulatory protein flrc of vibrio cholerae in nucleotide free state 0.9706 144 376
5ep2-assembly1.cif.gz_A quorum-sensing signal integrator luxo - catalytic domain in complex with azau inhibitor 0.9705 144 386
ID Description Score Start End Superfamily
af_Q06065_316_382_1.10.8.60 Mainly Alpha;Orthogonal Bundle;Helicase, Ruva Protein; domain 3; 0.9934 315 380 1.10.8.60
5m7nA02 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;P-loop containing nucleotide triphosphate hydrolases 0.9789 144 311 3.40.50.300
1ny6B02 Mainly Alpha;Orthogonal Bundle;Helicase, Ruva Protein; domain 3; 0.9701 316 385 1.10.8.60
1ny5B03 Mainly Alpha;Orthogonal Bundle;Helicase, Ruva Protein; domain 3; 0.9699 318 387 1.10.8.60
1ojlB01 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;P-loop containing nucleotide triphosphate hydrolases 0.9661 144 315 3.40.50.300
ID Description Score Start End GO Terms
AF-A0A529FBT6-F1-model_v4 Sigma-54 factor interaction domain-containing protein 0.9903 180 303 GO:0005524
GO:0006355
AF-A0A1E8GQ16-F1-model_v4 DNA-binding response regulator 0.9754 1 120 GO:0000156
GO:0000976
GO:0005829
GO:0006355
GO:0032993
AF-A0A529FBT6-F1-model_v4 Sigma-54 factor interaction domain-containing protein 0.9748 180 303 GO:0005524
GO:0006355
AF-A0A017HGR7-F1-model_v4 DNA-binding protein response regulator CtrA 0.9702 4 123 GO:0000156
GO:0000976
GO:0005829
GO:0006355
GO:0032993
AF-A0A2V9X8R0-F1-model_v4 DNA-binding response regulator 0.9687 4 123 GO:0000156
GO:0000976
GO:0005829
GO:0006355
GO:0032993

Map