F385897

General Info

Members Datasets Scaffolds Average Seq Length
283 252 160 325

Family's Representative Sequence

Representative Sequence 3300053153|Ga0500616_0000826|Ga0500616_0000826_21100_22266
Length 388
Sequence MTQPPETLDPIDMEAAGSSSSGIIPSVYDGPLLQVKNLTVEFKTDDGIVHAVDSVSFDVNPNETLGIVGESGSGKSVTSMAILGLLPKSANISGEVLFRGENILGESEKELQKLRGAKIAMIFQDALAALNPVFKVGDQIGEAVKVHQTLTDKEVDERVVELLEIVGIPNPAARSKQYPHEFSGGMRQRAMIAMSIANDPDLLIADEPTTALDVTIQAQVLDVLERIQDRTSSSIMLITHDLGVVAGVADRVLVMYAGRQVEQGTVDQIFYEPRHPYAAGLLASLPRLDRRSDKNSRLHRIKGQPPSVIYLPPGCAFHPRCPMAEAPGICDHERPELRNVGPDHVAACHFAERLADEQAAALVTAEERAGLPDISEVLAEPEPPEETG

Samples

Sample ID Description Type Environment
1 2510065019 Rhizobium leguminosarum bv. trifolii WSM1689 Isolate Nodule
2 2513237084 Rhizobium leguminosarum bv. viciae UPM1131 Isolate Nodule
3 2513237093 Rhizobium leguminosarum bv. phaseoli FA23 Isolate Nodule
4 2513237144 Rhizobium sullae WSM1592 Isolate Nodule
5 2513237146 Rhizobium mongolense USDA 1844 (Illumina) Isolate Nodule
6 2515075009 Rhizobium leguminosarum bv. viciae 248 Isolate Nodule
7 2515154088 Salinispora arenicola CNT800 Isolate Rhizosphere
8 2515154129 Salinispora pacifica CNS103 Isolate Rhizosphere
9 2515154134 Rhizobium gallicum bv. gallicum R602sp Isolate Nodule
10 2515154137 Salinispora arenicola CNX482 Isolate Rhizosphere
11 2515154202 Salinispora pacifica CNT084 Isolate Rhizosphere
12 2515154203 Salinispora arenicola CNR921 Isolate Rhizosphere
13 2517093000 Rhizobium leguminosarum bv. trifolii SRDI943 Isolate Nodule
14 2517287029 Rhizobium leguminosarum bv. trifolii SRDI565 Isolate Nodule
15 2529292951 Rhizobium sp. CCGE 510 Isolate Nodule
16 2547132103 Chromobacterium sp. C-61 Isolate Rhizosphere
17 2585427526 Rhizobium leguminosarum OV152 Isolate Rhizosphere
18 2585427633 Neorhizobium galegae bv. officinalis HAMBI 1141 Isolate Nodule
19 2585427634 Neorhizobium galegae bv. orientalis HAMBI 540 Isolate Nodule
20 2599185170 Rhizobium mongolense USDA 1844 (PacBio) Isolate Nodule
21 2615840624 Rhizobium aethiopicum HBR26 Isolate Nodule
22 2643221636 Rhizobium sp. Root1204 Isolate Unclassified
23 2718217927 Rhizobium sp. N324 Isolate Nodule
24 2718217997 Rhizobium phaseoli sv. phaseoli R723 Isolate Nodule
25 2718218009 Rhizobium sp. N561 Isolate Nodule
26 2718218199 Rhizobium phaseoli sv. phaseoli N261 Isolate Nodule
27 2718218232 Rhizobium phaseoli sv. phaseoli N161 Isolate Nodule
28 2718218233 Rhizobium phaseoli sv. phaseoli R744 Isolate Nodule
29 2718218235 Rhizobium phaseoli sv. phaseoli R620 Isolate Nodule
30 2718218269 Rhizobium phaseoli sv. phaseoli N671 Isolate Nodule
31 2718218363 Rhizobium sp. N113 Isolate Nodule
32 2718218365 Rhizobium sp. N731 Isolate Nodule
33 2718218366 Rhizobium sp. N621 Isolate Nodule
34 2718218423 Rhizobium sp. N941 Isolate Nodule
35 2721755514 Rhizobium sp. N6212 Isolate Nodule
36 2721755556 Rhizobium phaseoli sv. phaseoli N931 Isolate Nodule
37 2721755684 Rhizobium phaseoli sv. phaseoli N841 Isolate Nodule
38 2721755685 Rhizobium phaseoli sv. phaseoli R611 Isolate Nodule
39 2721755809 Rhizobium sp. N541 Isolate Nodule
40 2721755810 Rhizobium sp. N871 Isolate Nodule
41 2721755819 Rhizobium phaseoli sv. phaseoli N771 Isolate Nodule
42 2721755822 Rhizobium phaseoli sv. phaseoli R650 Isolate Nodule
43 2721755823 Rhizobium phaseoli sv. phaseoli R630 Isolate Nodule
44 2724679232 Rhizobium leguminosarum Vaf12 Isolate Unclassified
45 2728369352 Rhizobium phaseoli sv. phaseoli N831 Isolate Nodule
46 2728369365 Rhizobium sp. N1341 Isolate Nodule
47 2728369397 Rhizobium sp. N1314 Isolate Nodule
48 2738543034 Rhodococcus sp. OK269 Isolate Unclassified
49 2765235942 Rhizobium sp. WYCCWR10014 Isolate Nodule
50 2791355094 Sinorhizobium sp. BJ1 Isolate Nodule
51 2791355256 Rhizobium sp. M10 Isolate Nodule
52 2791355262 Rhizobium sp. M1 Isolate Nodule
53 2791355264 Rhizobium sp. S9 Isolate Nodule
54 2791355265 Rhizobium sp. H4 Isolate Nodule
55 2802429605 Rhizobium sophoriradicis L101 Isolate Nodule
56 2802429606 Rhizobium sophoriradicis JJW1 Isolate Nodule
57 2816332119 Kribbella amoyensis DSM 24683 Isolate Rhizosphere
58 2831935698 Jishengella sp. AZ1-13 Isolate Unclassified
59 2838016132 Rhizobium phaseoli SEMIA 4071 Isolate Nodule
60 2838035591 Rhizobium mongolense SEMIA 4087 Isolate Nodule
61 2838061910 Rhizobium phaseoli L15 Isolate Nodule
62 2838068647 Rhizobium esperanzae VC28 Isolate Nodule
63 2838668709 Rhizobium sophoriradicis SEMIA 403 Isolate Nodule
64 2838701080 Rhizobium aethiopicum SEMIA 428 Isolate Nodule
65 2842110456 Rhizobium esperanzae SEMIA 414 Isolate Nodule
66 2842146304 Rhizobium sophoriradicis SEMIA 454 Isolate Nodule
67 2842163707 Rhizobium leguminosarum SEMIA 460 Isolate Nodule
68 2842192696 Rhizobium esperanzae SEMIA 468 Isolate Nodule
69 2842205361 Rhizobium etli SEMIA 471 Isolate Nodule
70 2842250916 Rhizobium etli SEMIA 484 Isolate Nodule
71 2842278818 Rhizobium etli SEMIA 489 Isolate Nodule
72 2842285085 Rhizobium lentis SEMIA 490 Isolate Nodule
73 2842317721 Rhizobium etli SEMIA 4004 Isolate Nodule
74 2842402390 Rhizobium lentis SEMIA 4033 Isolate Nodule
75 2842409023 Rhizobium lentis SEMIA 4034 Isolate Nodule
76 2842415677 Rhizobium lentis SEMIA 4036 Isolate Nodule
77 2842422224 Rhizobium esperanzae SEMIA 4042 Isolate Nodule
78 2842428310 Rhizobium phaseoli SEMIA 4050 Isolate Nodule
79 2842441272 Rhizobium esperanzae SEMIA 4053 Isolate Nodule
80 2842447887 Rhizobium esperanzae SEMIA 4055 Isolate Nodule
81 2842462802 Rhizobium phaseoli SEMIA 4057 Isolate Nodule
82 2842469257 Rhizobium phaseoli SEMIA 4058 Isolate Nodule
83 2842489311 Rhizobium sophoriradicis SEMIA 4061 Isolate Nodule
84 2842495871 Rhizobium etli SEMIA 4062 Isolate Nodule
85 2843690924 Chromobacterium rhizoryzae JP2-74 Isolate Rhizosphere
86 2854601825 Dickeya dianthicola SS70 Isolate Stem Tuber
87 2854896431 Neorhizobium alkalisoli DSM 21826 Isolate Unclassified
88 2857516855 Rhizobium sp. R-72456 Isolate Unclassified
89 2862574272 Streptomyces sp. AcE210 Isolate Nodule
90 2891554331 Microbispora sp. CL1-1 Isolate Unclassified
91 2904765812 Rhodococcus fascians 1590 Isolate Rhizosphere
92 2904770941 Rhodococcus fascians 1339 Isolate Rhizosphere
93 2908811453 Rhodococcus sp. 1R11 Isolate Unclassified
94 2919171160 Neorhizobium sp. 2083 Isolate Unclassified
95 2919420072 Rhodococcus fascians 3241 Isolate Rhizosphere
96 2919432681 Rhodococcus sp. 3258 Isolate Rhizosphere
97 2933016740 Rhizobium sp. SEMIA 4085 Isolate Nodule
98 2933586486 Rhizobium leguminosarum SEMIA 4039 Isolate Nodule
99 2935901341 Rhizobium leguminosarum SEMIA 4082 Isolate Nodule
100 2936367885 Rhizobium changzhiense WYCCWR 11290 Isolate Nodule
101 2936375103 Rhizobium changzhiense WYCCWR 11317 Isolate Nodule
102 2974315732 Rhodococcus sp. SORGH_AS 301 Isolate Unclassified
103 2984523437 Rhodococcus sp. SORGH_AS303 Isolate Aerial Root
104 3300003316 Sugarcane root Sample L1 Metagenome Unclassified
105 3300003322 Sugarcane root Sample L2 Metagenome Unclassified
106 3300003781 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mLB_r2 Metagenome Endosphere
107 3300003792 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mMS_r2 Metagenome Endosphere
108 3300003794 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 Metagenome Endosphere
109 3300005355 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG Metagenome Rhizosphere
110 3300005366 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG Metagenome Rhizosphere
111 3300005445 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG Metagenome Rhizosphere
112 3300005536 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG Metagenome Rhizosphere
113 3300005539 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 Metagenome Rhizosphere
114 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
115 3300005985 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
116 3300006028 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG Metagenome Rhizosphere
117 3300006038 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 Metagenome Endosphere
118 3300006353 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 Metagenome Endosphere
119 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
120 3300009098 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG Metagenome Rhizosphere
121 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
122 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
123 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
124 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
125 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
126 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
127 3300021361 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2 Metagenome Rhizosphere
128 3300021388 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 Metagenome Unclassified
129 3300025273 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMS_r2 (SPAdes) (version 3) Metagenome Endosphere
130 3300025292 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mLB_r2 (SPAdes) (version 2) Metagenome Endosphere
131 3300025295 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMF_r2 (SPAdes) (version 3) Metagenome Endosphere
132 3300025297 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF (SPAdes) (version 2) Metagenome Endosphere
133 3300025299 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mCL_r2 (SPAdes) (version 3) Metagenome Endosphere
134 3300025303 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mMS_r2 (SPAdes) (version 2) Metagenome Endosphere
135 3300025304 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
136 3300025910 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
137 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
138 3300025914 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
139 3300025945 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
140 3300026041 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes) (version 2) Metagenome Rhizosphere
141 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
142 3300028794 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM Metagenome Unclassified
143 3300030522 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 14_EM Metagenome Unclassified
144 3300031548 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3 Metagenome Rhizosphere
145 3300031649 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 16_EM Metagenome Unclassified
146 3300031665 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J5-7_050615r2r3 Metagenome Rhizosphere
147 3300031691 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J5-7_160517rDrA Metagenome Rhizosphere
148 3300031727 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_050615r3r5 Metagenome Rhizosphere
149 3300031728 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_160517rDrC Metagenome Rhizosphere
150 3300031730 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 19_EM Metagenome Unclassified
151 3300031731 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-1 Metagenome Rhizosphere
152 3300031733 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S5-7_050615r2r1 Metagenome Rhizosphere
153 3300031901 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2 Metagenome Rhizosphere
154 3300031995 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2 Metagenome Rhizosphere
155 3300032126 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-2 Metagenome Rhizosphere
156 3300035170 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_1 Metagenome Rhizosphere
157 3300035695 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_19 Metagenome Rhizosphere
158 3300036647 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J_170502JArCrA Metagenome Rhizosphere
159 3300036712 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S_170502SBrCrA Metagenome Rhizosphere
160 3300037853 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 v2 Metagenome Unclassified
161 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
162 3300038735 Seagrass microbial communities from Seahorse Key, FL, USA - SH0319 Metagenome Unclassified
163 3300039447 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2 v2 Metagenome Rhizosphere
164 3300041492 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR17_2 MetaG Metagenome Unclassified
165 3300041494 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR17_3 MetaG Metagenome Unclassified
166 3300041496 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR17_4 MetaG Metagenome Unclassified
167 3300041498 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR17_5 MetaG Metagenome Unclassified
168 3300041503 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR18_8 MetaG Metagenome Unclassified
169 3300041505 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR18_9 MetaG Metagenome Unclassified
170 3300041509 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR17_6 MetaG Metagenome Unclassified
171 3300044656 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA1R Metagenome Rhizosphere
172 3300044683 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA3R Metagenome Rhizosphere
173 3300044694 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC3R Metagenome Rhizosphere
174 3300044765 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA2R Metagenome Rhizosphere
175 3300044842 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA2R Metagenome Rhizosphere
176 3300044901 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA4R Metagenome Rhizosphere
177 3300045049 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC3R Metagenome Rhizosphere
178 3300045836 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC4R Metagenome Rhizosphere
179 3300046455 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-307-CL1_26_33 rhizosphere Metagenome Rhizosphere
180 3300046463 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-866-CL3_75_7 rhizosphere Metagenome Rhizosphere
181 3300046501 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co3_27_41 rhizosphere Metagenome Rhizosphere
182 3300046513 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-351-Co2_42_17 rhizosphere Metagenome Rhizosphere
183 3300046515 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co2_62_25 rhizosphere Metagenome Rhizosphere
184 3300046518 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co1_22_4 rhizosphere Metagenome Rhizosphere
185 3300046522 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 rhizosphere Metagenome Rhizosphere
186 3300046531 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL2_41_30 rhizosphere Metagenome Rhizosphere
187 3300046542 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co2_52_27 rhizosphere Metagenome Rhizosphere
188 3300046543 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL1_28_5 rhizosphere Metagenome Rhizosphere
189 3300046616 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co1_14_4 rhizosphere Metagenome Rhizosphere
190 3300046648 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co3_15_40 rhizosphere Metagenome Rhizosphere
191 3300046660 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co1_32_7 rhizosphere Metagenome Rhizosphere
192 3300046689 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL2_54_28 rhizosphere Metagenome Rhizosphere
193 3300046794 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-133-Co1_27_3 rhizosphere Metagenome Rhizosphere
194 3300046810 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co2_51_17 rhizosphere Metagenome Rhizosphere
195 3300047321 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL3_98_5 rhizosphere Metagenome Rhizosphere
196 3300047323 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWA-24-3-Co3_23_35 rhizosphere Metagenome Rhizosphere
197 3300047443 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co3_24_32 rhizosphere Metagenome Rhizosphere
198 3300047445 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co1_16_8 rhizosphere Metagenome Rhizosphere
199 3300047447 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co1_7_5 rhizosphere Metagenome Rhizosphere
200 3300047472 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co2_54_22 rhizosphere Metagenome Rhizosphere
201 3300048905 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1c N15 Metagenome Rhizoplane
202 3300048913 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4c N15 Metagenome Rhizoplane
203 3300048914 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4d N15 Metagenome Rhizoplane
204 3300048915 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5c N15 Metagenome Rhizoplane
205 3300048918 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6d N15 Metagenome Rhizoplane
206 3300048919 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_7x unlabeled Metagenome Unclassified
207 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
208 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
209 3300049572 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 Metagenome Rhizosphere
210 3300049576 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_01 Metagenome Rhizosphere
211 3300049577 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_02 Metagenome Rhizosphere
212 3300049578 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_03 Metagenome Rhizosphere
213 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
214 3300049582 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_03 Metagenome Rhizosphere
215 3300049587 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_02 Metagenome Rhizosphere
216 3300049588 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_03 Metagenome Rhizosphere
217 3300049592 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_01 Metagenome Rhizosphere
218 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
219 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
220 3300049824 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_03 Metagenome Rhizosphere
221 3300050491 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 re-annotation Metagenome Endosphere
222 3300050512 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 re-annotation Metagenome Rhizosphere
223 3300053083 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-866-Co2_58_19 rhizosphere Metagenome Rhizosphere
224 3300053085 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-360-CL3_72_12 rhizosphere Metagenome Rhizosphere
225 3300053086 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co2_62_14 endosphere Metagenome Endosphere
226 3300053090 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co3_31_39 endosphere Metagenome Endosphere
227 3300053122 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL3_77_6 endosphere Metagenome Endosphere
228 3300053153 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 endosphere Metagenome Endosphere
229 3300053161 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co3_16_51 endosphere Metagenome Endosphere
230 3300053727 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co3_31_37 endosphere Metagenome Endosphere
231 3300054114 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_03 Metagenome Rhizosphere
232 3300060353 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_01 Metagenome Rhizosphere
233 3300061734 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_03 (v2) (version 2) Metagenome Rhizosphere
234 8005275841 Rhizobium sp. N4311 Isolate Nodule
235 8005282627 Rhizobium phaseoli NC1 Isolate Nodule
236 8005307578 Rhizobium leguminosarum bv. phaseoli LCS0306 Isolate Unclassified
237 8005395548 Rhizobium sp. R339 Isolate Nodule
238 8005430974 Rhizobium phaseoli Y20 Isolate Nodule
239 8005460587 Rhizobium leguminosarum bv. viciae 248 Isolate Nodule
240 8005497431 Rhizobium phaseoli CCGM8 Isolate Unclassified
241 8005619151 Rhizobium phaseoli CCGM2 Isolate Unclassified
242 8005626139 Rhizobium phaseoli Y18 Isolate Nodule
243 8005668836 Rhizobium phaseoli CCGM9 Isolate Unclassified
244 8018127388 Rhizobium aegyptiacum 950 Isolate Nodule
245 8018163183 Rhizobium sp. WYCCWR 11146 Isolate Nodule
246 8018176218 Rhizobium sp. N122 Isolate Nodule
247 8024479707 Rhizobium leguminosarum Tri-43 Isolate Nodule
248 8024501048 Rhizobium sp. H4 Isolate Nodule
249 8048127548 Streptomyces samsunensis DSM 42010 Isolate Rhizosphere
250 8054563764 Acuticoccus kalidii M5D2P5 Isolate Unclassified
251 8056382006 Rhizobium croatiense 13T Isolate Nodule
252 8057874678 Rhizobium acaciae 1AS12 Isolate Nodule

Type Distribution

Type Percentage (%)
Metagenomes 56.54
Metatranscriptomes 0
Isolates 43.46

Biome Distribution

Category Percentage (%)
Aerial Root 0.35
Bulb 0
Endosphere 7.77
Nodule 32.16
Rhizoplane 1.77
Rhizosphere 44.52
Stem 0
Stem Tuber 0.35
Unclassified 13.07

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 rootH1_10068201 3300003316 Bacteria 2092
2 rootL2_10002570 3300003322 Bacteria 12236
3 Ga0055536_1003314 3300003781 Bacteria 8714
4 Ga0055540_1009729 3300003792 Bacteria 3282
5 Ga0055531_10004292 3300003794 Bacteria 8743
6 Ga0070671_100191582 3300005355 Bacteria 1733
7 Ga0070659_100202867 3300005366 Bacteria 1633
8 Ga0070708_100004191 3300005445 Bacteria 11330
9 Ga0070697_100011304 3300005536 Bacteria 6975
10 Ga0070697_100074837 3300005536 Bacteria 2783
11 Ga0068853_100011744 3300005539 Bacteria 7118
12 Ga0068856_100240695 3300005614 Bacteria 1825
13 Ga0081539_10066946 3300005985 Bacteria 1945
14 Ga0070717_10000010 3300006028 Bacteria 283501
15 Ga0075365_10118328 3300006038 Bacteria 1826
16 Ga0075370_10142764 3300006353 Bacteria 1400
17 Ga0105240_10017164 3300009093 Bacteria 9770
18 Ga0105245_10131139 3300009098 Bacteria 2351
19 Ga0114129_10323472 3300009147 Bacteria 2050
20 Ga0105237_10000080 3300009545 Bacteria 127788
21 Ga0105238_10003828 3300009551 Bacteria 14948
22 Ga0105238_10625602 3300009551 Bacteria 1085
23 Ga0105239_10000116 3300010375 Bacteria 112811
24 Ga0157369_10028800 3300013105 Bacteria 6143
25 Ga0157369_10177616 3300013105 Bacteria 2241
26 Ga0157372_10895394 3300013307 Bacteria 1030
27 Ga0213872_10000021 3300021361 Bacteria 158749
28 Ga0213872_10000218 3300021361 Bacteria 50680
29 Ga0213875_10001293 3300021388 Bacteria 16668
30 Ga0209673_1020979 3300025273 Bacteria 2297
31 Ga0209676_1000580 3300025292 Bacteria 55127
32 Ga0209564_1016641 3300025295 Bacteria 2911
33 Ga0209758_1000915 3300025297 Bacteria 39992
34 Ga0209256_1009551 3300025299 Bacteria 4230
35 Ga0209051_1006560 3300025303 Bacteria 6534
36 Ga0209257_1009730 3300025304 Bacteria 5053
37 Ga0207684_10140020 3300025910 Bacteria 2079
38 Ga0207695_10022957 3300025913 Bacteria 7065
39 Ga0207671_10001470 3300025914 Bacteria 27227
40 Ga0207679_10144830 3300025945 Bacteria 1926
41 Ga0207639_10007365 3300026041 Bacteria 7502
42 Ga0207674_10358710 3300026116 Bacteria 1409
43 Ga0307515_10001066 3300028794 Bacteria 62806
44 Ga0307515_10129153 3300028794 Bacteria 2797
45 Ga0307512_10012151 3300030522 Bacteria 8140
46 Ga0307408_100230084 3300031548 Bacteria 1518
47 Ga0307514_10090795 3300031649 Bacteria 2227
48 Ga0316575_10053638 3300031665 Bacteria 1606
49 Ga0316579_10064518 3300031691 Bacteria 1727
50 Ga0316576_10001107 3300031727 Bacteria 14072
51 Ga0316576_10006090 3300031727 Bacteria 7464
52 Ga0316576_10159899 3300031727 Bacteria 1699
53 Ga0316578_10012368 3300031728 Bacteria 4499
54 Ga0316578_10062951 3300031728 Bacteria 2188
55 Ga0307516_10039148 3300031730 Bacteria 4727
56 Ga0307516_10039707 3300031730 Bacteria 4690
57 Ga0307405_10014699 3300031731 Bacteria 4218
58 Ga0316577_10027655 3300031733 Bacteria 3163
59 Ga0307406_10273582 3300031901 Bacteria 1284
60 Ga0307409_100003912 3300031995 Bacteria 8245
61 Ga0307409_100139581 3300031995 Bacteria 2086
62 Ga0307415_100067188 3300032126 Bacteria 2504
63 Ga0373943_0104992 3300035170 Bacteria 1483
64 Ga0373927_0135114 3300035695 Bacteria 1612
65 Ga0316582_0017111 3300036647 Bacteria 4186
66 Ga0316584_0002292 3300036712 Bacteria 12040
67 Ga0316584_0013904 3300036712 Bacteria 5711
68 Ga0316584_0132888 3300036712 Bacteria 1858
69 Ga0436364_1326662 3300037853 Bacteria 39324
70 Ga0395901_0252977 3300038443 Bacteria 1835
71 Ga0400485_13420 3300038735 Bacteria 3647
72 Ga0400485_18460 3300038735 Bacteria 2930
73 Ga0436361_0133183 3300039447 Bacteria 45710
74 Ga0436361_0354255 3300039447 Bacteria 247479
75 Ga0436361_0366030 3300039447 Bacteria 29190
76 Ga0451835_0233907 3300041492 Bacteria 1878
77 Ga0451837_1374592 3300041494 Bacteria 2266
78 Ga0451839_1404461 3300041496 Bacteria 1338
79 Ga0451841_0077409 3300041498 Bacteria 2581
80 Ga0451847_0053825 3300041503 Bacteria 4033
81 Ga0451849_0192058 3300041505 Bacteria 2173
82 Ga0451843_0020959 3300041509 Bacteria 1503
83 Ga0466969_0069721 3300044656 Bacteria 1692
84 Ga0466965_0020264 3300044683 Bacteria 3195
85 Ga0466965_0100748 3300044683 Bacteria 1477
86 Ga0466963_0178687 3300044694 Bacteria 1481
87 Ga0466970_0006897 3300044765 Bacteria 5687
88 Ga0466957_0000612 3300044842 Bacteria 18009
89 Ga0466960_0015366 3300044901 Bacteria 3299
90 Ga0466959_0071608 3300045049 Bacteria 2510
91 Ga0466958_0118023 3300045836 Bacteria 1659
92 Ga0466958_0119639 3300045836 Bacteria 1648
93 Ga0495603_0009419 3300046455 Bacteria 5902
94 Ga0495653_0088234 3300046463 Bacteria 2276
95 Ga0495607_0011932 3300046501 Bacteria 5758
96 Ga0495607_0061931 3300046501 Bacteria 2124
97 Ga0495616_0110387 3300046513 Bacteria 1278
98 Ga0495620_0027179 3300046515 Bacteria 2681
99 Ga0495620_0062392 3300046515 Bacteria 1548
100 Ga0495631_0036745 3300046518 Bacteria 2186
101 Ga0495631_0066541 3300046518 Bacteria 1559
102 Ga0495643_0035834 3300046522 Bacteria 2730
103 Ga0495665_0076769 3300046531 Bacteria 1758
104 Ga0495597_0075642 3300046542 Bacteria 1445
105 Ga0495645_0005783 3300046543 Bacteria 8527
106 Ga0495668_0031226 3300046616 Bacteria 3003
107 Ga0495668_0032080 3300046616 Bacteria 2958
108 Ga0495611_0003098 3300046648 Bacteria 7385
109 Ga0495625_0022959 3300046660 Bacteria 4773
110 Ga0495625_0028623 3300046660 Bacteria 4176
111 Ga0495613_0129242 3300046689 Bacteria 1810
112 Ga0495589_0005978 3300046794 Bacteria 6428
113 Ga0495660_0006955 3300046810 Bacteria 6667
114 Ga0495676_0141489 3300047321 Bacteria 1724
115 Ga0495683_0021852 3300047323 Bacteria 3296
116 Ga0495687_044716 3300047443 Bacteria 1922
117 Ga0495677_0029226 3300047445 Bacteria 2004
118 Ga0495685_001655 3300047447 Bacteria 6873
119 Ga0495686_0173686 3300047472 Bacteria 1252
120 Ga0496102_0133194 3300048905 Bacteria 2328
121 Ga0496110_0131512 3300048913 Bacteria 2260
122 Ga0496111_0366150 3300048914 Bacteria 1067
123 Ga0496112_0055713 3300048915 Bacteria 3889
124 Ga0496115_0043124 3300048918 Bacteria 3597
125 Ga0496116_0004795 3300048919 Bacteria 12763
126 Ga0496126_0323956 3300048929 Bacteria 1266
127 Ga0501034_0035831 3300049571 Bacteria 5030
128 Ga0501034_0163693 3300049571 Bacteria 2194
129 Ga0501036_0072452 3300049572 Bacteria 2912
130 Ga0501040_0051586 3300049576 Bacteria 2814
131 Ga0501040_0166287 3300049576 Bacteria 1561
132 Ga0501041_0140758 3300049577 Bacteria 1504
133 Ga0501042_0042228 3300049578 Bacteria 3245
134 Ga0501047_0000076 3300049581 Bacteria 124949
135 Ga0501048_0057225 3300049582 Bacteria 2765
136 Ga0501071_0097974 3300049587 Bacteria 2159
137 Ga0501072_0122073 3300049588 Bacteria 2076
138 Ga0501072_0157295 3300049588 Bacteria 1812
139 Ga0501076_0077148 3300049592 Bacteria 2673
140 Ga0501076_0079447 3300049592 Bacteria 2632
141 Ga0501035_0342811 3300049822 Bacteria 1252
142 Ga0501044_0116601 3300049823 Bacteria 2675
143 Ga0501045_0072747 3300049824 Bacteria 2531
144 nmdc:mga00v17_110988_c1 3300050491 Bacteria 1740
145 nmdc:mga0n895_53147_c1 3300050512 Bacteria 3979
146 Ga0495655_0006805 3300053083 Bacteria 2096
147 Ga0495619_0045599 3300053085 Bacteria 2881
148 Ga0495619_0140665 3300053085 Bacteria 1662
149 Ga0500578_0019924 3300053086 Bacteria 4310
150 Ga0500646_0000105 3300053090 Bacteria 24117
151 Ga0500608_162166 3300053122 Bacteria 968
152 Ga0500616_0000134 3300053153 Bacteria 129376
153 Ga0500616_0000826 3300053153 Bacteria 35059
154 Ga0500616_0001973 3300053153 Bacteria 18222
155 Ga0500616_0037891 3300053153 Bacteria 2607
156 Ga0500634_0000073 3300053161 Bacteria 39695
157 Ga0500611_003227 3300053727 Bacteria 2064
158 Ga0501084_0000468 3300054114 Bacteria 31212
159 Ga0501082_0365774 3300060353 Bacteria 1258
160 Ga0530510_0236151 3300061734 Bacteria 1360

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 3300053122 Ga0500608_162166 Ga0500608_162166_115_951 262
2 3300013307 Ga0157372_10895394 Ga0157372_108953941 277
3 3300005536 Ga0070697_100011304 Ga0070697_1000113045 298
4 3300025273 Ga0209673_1020979 Ga0209673_10209791 298
5 3300025295 Ga0209564_1016641 Ga0209564_10166413 298
6 3300025299 Ga0209256_1009551 Ga0209256_10095514 298
7 3300041492 Ga0451835_0233907 Ga0451835_0233907_643_1614 298
8 3300041494 Ga0451837_1374592 Ga0451837_1374592_352_1323 298
9 3300041496 Ga0451839_1404461 Ga0451839_1404461_317_1288 298
10 3300041498 Ga0451841_0077409 Ga0451841_0077409_727_1698 298
11 3300041503 Ga0451847_0053825 Ga0451847_0053825_601_1572 298
12 3300041505 Ga0451849_0192058 Ga0451849_0192058_200_1171 298
13 3300041509 Ga0451843_0020959 Ga0451843_0020959_105_1076 298
14 3300046501 Ga0495607_0061931 Ga0495607_0061931_303_1274 298
15 3300046513 Ga0495616_0110387 Ga0495616_0110387_11_982 298
16 3300046515 Ga0495620_0027179 Ga0495620_0027179_481_1452 298
17 3300046522 Ga0495643_0035834 Ga0495643_0035834_1154_2125 298
18 3300046542 Ga0495597_0075642 Ga0495597_0075642_265_1236 298
19 3300046616 Ga0495668_0031226 Ga0495668_0031226_1051_2022 298
20 3300046810 Ga0495660_0006955 Ga0495660_0006955_4513_5484 298
21 3300047443 Ga0495687_044716 Ga0495687_044716_769_1740 298
22 3300047472 Ga0495686_0173686 Ga0495686_0173686_54_1025 298
23 3300053086 Ga0500578_0019924 Ga0500578_0019924_1117_2088 298
24 3300053153 Ga0500616_0000134 Ga0500616_0000134_91949_92920 298
25 3300053153 Ga0500616_0037891 Ga0500616_0037891_1601_2572 298
26 3300053727 Ga0500611_003227 Ga0500611_003227_238_1212 298
27 3300003781 Ga0055536_1003314 Ga0055536_10033145 300
28 3300003792 Ga0055540_1009729 Ga0055540_10097293 300
29 3300003794 Ga0055531_10004292 Ga0055531_100042923 300
30 3300025292 Ga0209676_1000580 Ga0209676_100058026 300
31 3300025297 Ga0209758_1000915 Ga0209758_100091517 300
32 3300025303 Ga0209051_1006560 Ga0209051_10065607 300
33 3300025304 Ga0209257_1009730 Ga0209257_10097302 300
34 3300031548 Ga0307408_100230084 Ga0307408_1002300842 300
35 3300053161 Ga0500634_0000073 Ga0500634_0000073_33293_34270 302
36 iso_pu_bacteria 8054563764 8054568323 302
37 3300046518 Ga0495631_0036745 Ga0495631_0036745_556_1527 305
38 3300046660 Ga0495625_0028623 Ga0495625_0028623_2420_3391 305
39 3300006028 Ga0070717_10000010 Ga0070717_10000010187 311
40 3300044683 Ga0466965_0020264 Ga0466965_0020264_1536_2573 311
41 3300044683 Ga0466965_0100748 Ga0466965_0100748_500_1450 311
42 3300044842 Ga0466957_0000612 Ga0466957_0000612_12894_13931 311
43 3300045836 Ga0466958_0119639 Ga0466958_0119639_190_1227 311
44 iso_pu_bacteria 2513237144 2513910900 312
45 3300021361 Ga0213872_10000021 Ga0213872_1000002140 313
46 3300039447 Ga0436361_0354255 Ga0436361_0354255_206305_207249 313
47 3300044656 Ga0466969_0069721 Ga0466969_0069721_120_1148 313
48 3300044765 Ga0466970_0006897 Ga0466970_0006897_3861_4889 313
49 iso_pu_bacteria 2510065019 2510135856 313
50 iso_pu_bacteria 2513237084 2513568118 313
51 iso_pu_bacteria 2513237093 2513631069 313
52 iso_pu_bacteria 2513237146 2513924729 313
53 iso_pu_bacteria 2515075009 2515108548 313
54 iso_pu_bacteria 2515154134 2515738057 313
55 iso_pu_bacteria 2517093000 2517098109 313
56 iso_pu_bacteria 2517287029 2517410117 313
57 iso_pu_bacteria 2529292951 2530644631 313
58 iso_pu_bacteria 2585427526 2585525638 313
59 iso_pu_bacteria 2585427633 2585992684 313
60 iso_pu_bacteria 2585427634 2586003416 313
61 iso_pu_bacteria 2599185170 2599416288 313
62 iso_pu_bacteria 2615840624 2616294155 313
63 iso_pu_bacteria 2643221636 2644200383 313
64 iso_pu_bacteria 2718217927 2719388554 313
65 iso_pu_bacteria 2718217997 2719669394 313
66 iso_pu_bacteria 2718218009 2719729645 313
67 iso_pu_bacteria 2718218199 2720494410 313
68 iso_pu_bacteria 2718218232 2720610730 313
69 iso_pu_bacteria 2718218233 2720616608 313
70 iso_pu_bacteria 2718218235 2720627964 313
71 iso_pu_bacteria 2718218269 2720771544 313
72 iso_pu_bacteria 2718218363 2721143895 313
73 iso_pu_bacteria 2718218365 2721156584 313
74 iso_pu_bacteria 2718218366 2721161270 313
75 iso_pu_bacteria 2718218423 2721403179 313
76 iso_pu_bacteria 2721755514 2722837223 313
77 iso_pu_bacteria 2721755556 2723030805 313
78 iso_pu_bacteria 2721755684 2723563307 313
79 iso_pu_bacteria 2721755685 2723571298 313
80 iso_pu_bacteria 2721755809 2724035536 313
81 iso_pu_bacteria 2721755810 2724040799 313
82 iso_pu_bacteria 2721755819 2724087093 313
83 iso_pu_bacteria 2721755822 2724100804 313
84 iso_pu_bacteria 2721755823 2724108061 313
85 iso_pu_bacteria 2724679232 2725947896 313
86 iso_pu_bacteria 2728369352 2730105271 313
87 iso_pu_bacteria 2728369365 2730162212 313
88 iso_pu_bacteria 2728369397 2730295345 313
89 iso_pu_bacteria 2765235942 2766069387 313
90 iso_pu_bacteria 2791355094 2792643266 313
91 iso_pu_bacteria 2791355256 2793296056 313
92 iso_pu_bacteria 2791355262 2793334759 313
93 iso_pu_bacteria 2791355264 2793348696 313
94 iso_pu_bacteria 2791355265 2793356955 313
95 iso_pu_bacteria 2802429605 2805931364 313
96 iso_pu_bacteria 2802429606 2805933012 313
97 iso_pu_bacteria 2838016132 2838019804 313
98 iso_pu_bacteria 2838035591 2838036407 313
99 iso_pu_bacteria 2838061910 2838067124 313
100 iso_pu_bacteria 2838068647 2838072658 313
101 iso_pu_bacteria 2838668709 2838668744 313
102 iso_pu_bacteria 2838701080 2838701596 313
103 iso_pu_bacteria 2842110456 2842111244 313
104 iso_pu_bacteria 2842146304 2842146339 313
105 iso_pu_bacteria 2842163707 2842164001 313
106 iso_pu_bacteria 2842192696 2842193569 313
107 iso_pu_bacteria 2842205361 2842208660 313
108 iso_pu_bacteria 2842250916 2842251431 313
109 iso_pu_bacteria 2842278818 2842281994 313
110 iso_pu_bacteria 2842285085 2842287925 313
111 iso_pu_bacteria 2842317721 2842319679 313
112 iso_pu_bacteria 2842402390 2842405191 313
113 iso_pu_bacteria 2842409023 2842412052 313
114 iso_pu_bacteria 2842415677 2842418421 313
115 iso_pu_bacteria 2842422224 2842426244 313
116 iso_pu_bacteria 2842428310 2842430028 313
117 iso_pu_bacteria 2842441272 2842442731 313
118 iso_pu_bacteria 2842447887 2842453825 313
119 iso_pu_bacteria 2842462802 2842464607 313
120 iso_pu_bacteria 2842469257 2842471025 313
121 iso_pu_bacteria 2842489311 2842490549 313
122 iso_pu_bacteria 2842495871 2842501580 313
123 iso_pu_bacteria 2854896431 2854898993 313
124 iso_pu_bacteria 2857516855 2857518098 313
125 iso_pu_bacteria 2919171160 2919174094 313
126 iso_pu_bacteria 2933016740 2933023305 313
127 iso_pu_bacteria 2933586486 2933587797 313
128 iso_pu_bacteria 2935901341 2935903103 313
129 iso_pu_bacteria 2936367885 2936374343 313
130 iso_pu_bacteria 2936375103 2936375149 313
131 iso_pu_bacteria 8005275841 8005277270 313
132 iso_pu_bacteria 8005282627 8005287480 313
133 iso_pu_bacteria 8005307578 8005307872 313
134 iso_pu_bacteria 8005395548 8005399158 313
135 iso_pu_bacteria 8005430974 8005435882 313
136 iso_pu_bacteria 8005460587 8005467278 313
137 iso_pu_bacteria 8005497431 8005503630 313
138 iso_pu_bacteria 8005619151 8005625940 313
139 iso_pu_bacteria 8005626139 8005632178 313
140 iso_pu_bacteria 8005668836 8005675508 313
141 iso_pu_bacteria 8018127388 8018134734 313
142 iso_pu_bacteria 8018163183 8018165577 313
143 iso_pu_bacteria 8018176218 8018182345 313
144 iso_pu_bacteria 8024479707 8024484967 313
145 iso_pu_bacteria 8024501048 8024506825 313
146 iso_pu_bacteria 8056382006 8056382981 313
147 iso_pu_bacteria 8057874678 8057877948 313
148 3300009551 Ga0105238_10625602 Ga0105238_106256021 314
149 3300013105 Ga0157369_10028800 Ga0157369_100288005 314
150 3300044901 Ga0466960_0015366 Ga0466960_0015366_225_1214 314
151 iso_pu_bacteria 2547132103 2547374615 315
152 iso_pu_bacteria 2843690924 2843694541 315
153 3300046531 Ga0495665_0076769 Ga0495665_0076769_586_1602 316
154 3300047321 Ga0495676_0141489 Ga0495676_0141489_632_1648 316
155 3300005366 Ga0070659_100202867 Ga0070659_1002028672 317
156 3300025910 Ga0207684_10140020 Ga0207684_101400202 317
157 3300025945 Ga0207679_10144830 Ga0207679_101448302 317
158 3300049571 Ga0501034_0163693 Ga0501034_0163693_219_1208 317
159 3300049823 Ga0501044_0116601 Ga0501044_0116601_576_1550 317
160 3300005539 Ga0068853_100011744 Ga0068853_1000117441 318
161 3300009093 Ga0105240_10017164 Ga0105240_100171644 318
162 3300009545 Ga0105237_10000080 Ga0105237_100000803 318
163 3300009551 Ga0105238_10003828 Ga0105238_100038284 318
164 3300010375 Ga0105239_10000116 Ga0105239_10000116104 318
165 3300025913 Ga0207695_10022957 Ga0207695_100229572 318
166 3300025914 Ga0207671_10001470 Ga0207671_1000147011 318
167 3300026041 Ga0207639_10007365 Ga0207639_100073653 318
168 3300038443 Ga0395901_0252977 Ga0395901_0252977_114_1094 318
169 3300038735 Ga0400485_18460 Ga0400485_18460_664_1701 318
170 3300048918 Ga0496115_0043124 Ga0496115_0043124_2018_3055 318
171 3300049587 Ga0501071_0097974 Ga0501071_0097974_594_1610 318
172 3300049592 Ga0501076_0077148 Ga0501076_0077148_1097_2113 318
173 3300053153 Ga0500616_0001973 Ga0500616_0001973_15220_16302 318
174 3300005355 Ga0070671_100191582 Ga0070671_1001915821 319
175 3300005614 Ga0068856_100240695 Ga0068856_1002406952 319
176 3300006353 Ga0075370_10142764 Ga0075370_101427642 319
177 3300009147 Ga0114129_10323472 Ga0114129_103234722 319
178 3300013105 Ga0157369_10177616 Ga0157369_101776162 319
179 3300026116 Ga0207674_10358710 Ga0207674_103587101 319
180 3300030522 Ga0307512_10012151 Ga0307512_100121513 319
181 3300031730 Ga0307516_10039148 Ga0307516_100391484 319
182 3300031730 Ga0307516_10039707 Ga0307516_100397075 319
183 3300031995 Ga0307409_100139581 Ga0307409_1001395812 319
184 3300038735 Ga0400485_13420 Ga0400485_13420_265_1302 319
185 3300048913 Ga0496110_0131512 Ga0496110_0131512_380_1357 319
186 3300048914 Ga0496111_0366150 Ga0496111_0366150_48_1025 319
187 3300048919 Ga0496116_0004795 Ga0496116_0004795_451_1461 319
188 3300049572 Ga0501036_0072452 Ga0501036_0072452_663_1640 319
189 3300049576 Ga0501040_0051586 Ga0501040_0051586_1737_2714 319
190 3300049576 Ga0501040_0166287 Ga0501040_0166287_156_1133 319
191 3300049577 Ga0501041_0140758 Ga0501041_0140758_440_1417 319
192 3300049578 Ga0501042_0042228 Ga0501042_0042228_873_1850 319
193 3300049582 Ga0501048_0057225 Ga0501048_0057225_173_1150 319
194 3300049588 Ga0501072_0122073 Ga0501072_0122073_888_1865 319
195 3300049588 Ga0501072_0157295 Ga0501072_0157295_132_1109 319
196 3300049592 Ga0501076_0079447 Ga0501076_0079447_29_1006 319
197 3300049822 Ga0501035_0342811 Ga0501035_0342811_182_1159 319
198 3300049824 Ga0501045_0072747 Ga0501045_0072747_1220_2197 319
199 3300050491 nmdc:mga00v17_110988_c1 nmdc:mga00v17_110988_c1_88_1113 319
200 3300060353 Ga0501082_0365774 Ga0501082_0365774_121_1098 319
201 3300061734 Ga0530510_0236151 Ga0530510_0236151_305_1282 319
202 iso_pu_bacteria 2738543034 2739365127 319
203 iso_pu_bacteria 8048127548 8048131731 319
204 3300021388 Ga0213875_10001293 Ga0213875_1000129313 320
205 3300028794 Ga0307515_10001066 Ga0307515_1000106628 320
206 3300031901 Ga0307406_10273582 Ga0307406_102735821 320
207 3300031995 Ga0307409_100003912 Ga0307409_1000039122 320
208 3300032126 Ga0307415_100067188 Ga0307415_1000671882 320
209 3300037853 Ga0436364_1326662 Ga0436364_1326662_27932_28972 320
210 3300044694 Ga0466963_0178687 Ga0466963_0178687_24_1055 320
211 3300049571 Ga0501034_0035831 Ga0501034_0035831_2834_3832 320
212 iso_pu_bacteria 2515154088 2515496595 320
213 iso_pu_bacteria 2515154129 2515718405 320
214 iso_pu_bacteria 2515154137 2515756834 320
215 iso_pu_bacteria 2515154202 2516083441 320
216 iso_pu_bacteria 2515154203 2516089369 320
217 iso_pu_bacteria 2831935698 2831941000 320
218 iso_pu_bacteria 2904765812 2904768951 320
219 iso_pu_bacteria 2904770941 2904771761 320
220 iso_pu_bacteria 2908811453 2908811744 320
221 iso_pu_bacteria 2919420072 2919420075 320
222 iso_pu_bacteria 2919432681 2919434166 320
223 3300005985 Ga0081539_10066946 Ga0081539_100669462 321
224 3300031691 Ga0316579_10064518 Ga0316579_100645182 321
225 3300031727 Ga0316576_10001107 Ga0316576_100011077 321
226 3300031728 Ga0316578_10012368 Ga0316578_100123683 321
227 3300035170 Ga0373943_0104992 Ga0373943_0104992_433_1431 321
228 3300035695 Ga0373927_0135114 Ga0373927_0135114_468_1466 321
229 3300036647 Ga0316582_0017111 Ga0316582_0017111_1341_2378 321
230 3300036712 Ga0316584_0002292 Ga0316584_0002292_5538_6575 321
231 3300046463 Ga0495653_0088234 Ga0495653_0088234_1073_2071 321
232 3300046689 Ga0495613_0129242 Ga0495613_0129242_307_1305 321
233 3300048905 Ga0496102_0133194 Ga0496102_0133194_149_1249 321
234 3300049581 Ga0501047_0000076 Ga0501047_0000076_41549_42592 321
235 3300050512 nmdc:mga0n895_53147_c1 nmdc:mga0n895_53147_c1_1289_2287 321
236 3300053085 Ga0495619_0045599 Ga0495619_0045599_691_1689 321
237 3300053085 Ga0495619_0140665 Ga0495619_0140665_331_1350 321
238 3300053090 Ga0500646_0000105 Ga0500646_0000105_7006_7992 321
239 iso_pu_bacteria 2831935698 2831940387 321
240 iso_pu_bacteria 2862574272 2862575849 321
241 iso_pu_bacteria 2891554331 2891562564 321
242 3300005445 Ga0070708_100004191 Ga0070708_1000041913 322
243 3300005536 Ga0070697_100074837 Ga0070697_1000748372 322
244 3300006038 Ga0075365_10118328 Ga0075365_101183282 322
245 3300009098 Ga0105245_10131139 Ga0105245_101311392 322
246 3300031665 Ga0316575_10053638 Ga0316575_100536382 322
247 3300031727 Ga0316576_10159899 Ga0316576_101598992 322
248 3300031728 Ga0316578_10062951 Ga0316578_100629512 322
249 3300031733 Ga0316577_10027655 Ga0316577_100276553 322
250 3300036712 Ga0316584_0132888 Ga0316584_0132888_302_1309 322
251 3300045049 Ga0466959_0071608 Ga0466959_0071608_555_1595 322
252 3300046455 Ga0495603_0009419 Ga0495603_0009419_3577_4581 322
253 3300046501 Ga0495607_0011932 Ga0495607_0011932_2851_3855 322
254 3300046515 Ga0495620_0062392 Ga0495620_0062392_215_1219 322
255 3300046518 Ga0495631_0066541 Ga0495631_0066541_343_1347 322
256 3300046543 Ga0495645_0005783 Ga0495645_0005783_4957_6000 322
257 3300046616 Ga0495668_0032080 Ga0495668_0032080_1659_2663 322
258 3300046648 Ga0495611_0003098 Ga0495611_0003098_3593_4597 322
259 3300046660 Ga0495625_0022959 Ga0495625_0022959_3294_4298 322
260 3300046794 Ga0495589_0005978 Ga0495589_0005978_2789_3793 322
261 3300047323 Ga0495683_0021852 Ga0495683_0021852_831_1835 322
262 3300047445 Ga0495677_0029226 Ga0495677_0029226_527_1531 322
263 3300047447 Ga0495685_001655 Ga0495685_001655_4063_5067 322
264 3300048915 Ga0496112_0055713 Ga0496112_0055713_1660_2736 322
265 3300053153 Ga0500616_0000826 Ga0500616_0000826_21100_22266 322
266 3300054114 Ga0501084_0000468 Ga0501084_0000468_14859_15962 322
267 iso_pu_bacteria 2816332119 2816425324 322
268 iso_pu_bacteria 2854601825 2854604266 322
269 3300003316 rootH1_10068201 rootH1_100682011 323
270 3300003322 rootL2_10002570 rootL2_100025701 323
271 3300021361 Ga0213872_10000218 Ga0213872_100002182 323
272 3300028794 Ga0307515_10129153 Ga0307515_101291532 323
273 3300031649 Ga0307514_10090795 Ga0307514_100907953 323
274 3300031727 Ga0316576_10006090 Ga0316576_100060905 323
275 3300031731 Ga0307405_10014699 Ga0307405_100146993 323
276 3300036712 Ga0316584_0013904 Ga0316584_0013904_1607_2605 323
277 3300039447 Ga0436361_0133183 Ga0436361_0133183_9276_10256 323
278 3300039447 Ga0436361_0366030 Ga0436361_0366030_20858_21838 323
279 3300045836 Ga0466958_0118023 Ga0466958_0118023_512_1552 323
280 3300048929 Ga0496126_0323956 Ga0496126_0323956_78_1079 323
281 3300053083 Ga0495655_0006805 Ga0495655_0006805_217_1251 323
282 iso_pu_bacteria 2974315732 2974316256 323
283 iso_pu_bacteria 2984523437 2984524419 323

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF08352

oligo_HPY

Oligopeptide/dipeptide transporter, C-terminal region

261

330

0.96

PF00005

ABC_tran

ABC transporter

52

210

0.92

Structural Annotation

Top 5 Hits

ID Description Score Start End
3c41-assembly1.cif.gz_K abc protein artp in complex with amp-pnp/mg2+ 0.9417 1 254
7z19-assembly1.cif.gz_I e. coli c-p lyase bound to a single phnk abc domain 0.9378 1 254
5xu1-assembly1.cif.gz_B structure of a non-canonical abc transporter from streptococcus pneumoniae r6 0.9314 1 236
7cha-assembly1.cif.gz_J cryo-em structure of p.aeruginosa mlafebd with amppnp 0.9311 1 259
5lj9-assembly3.cif.gz_C structure of the e. coli macb abc domain (c2221) 0.9309 1 237
ID Description Score Start End Superfamily
af_P0AAG0_1_323_3.40.50.300 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;P-loop containing nucleotide triphosphate hydrolases 0.9844 1 318 3.40.50.300
af_P33916_3_268_3.40.50.300 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;P-loop containing nucleotide triphosphate hydrolases 0.9755 1 259 3.40.50.300
af_Q2FZR1_3_327_3.40.50.300 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;P-loop containing nucleotide triphosphate hydrolases 0.9718 1 311 3.40.50.300
af_P75796_10_305_3.40.50.300 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;P-loop containing nucleotide triphosphate hydrolases 0.9662 1 271 3.40.50.300
af_P0AAH4_2_329_3.40.50.300 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;P-loop containing nucleotide triphosphate hydrolases 0.9637 3 315 3.40.50.300
ID Description Score Start End GO Terms
AF-A0A7V3A3J9-F1-model_v4 ABC transporter ATP-binding protein 0.9828 2 313 GO:0005524
GO:0015833
GO:0016887
AF-S9SH09-F1-model_v4 Oligopeptide/dipeptide uptake family ABC transporter, ATP-binding protein 0.9817 1 256 GO:0005524
GO:0005886
GO:0016887
AF-A0A4Q7NPN0-F1-model_v4 Oligopeptide transport system ATP-binding protein 0.9793 1 311 GO:0005524
GO:0015833
GO:0016887
AF-A0A3D6C6D3-F1-model_v4 ABC transporter ATP-binding protein 0.979 155 259 GO:0005524
GO:0015833
GO:0016887
AF-A0A3S1TSN0-F1-model_v4 deleted 0.9787 2 249

Feature Viewer

pLDDT pTM Quality
91.4 0.9 High
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Predicted Structure (AlphaFold2)

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