F388753

General Info

Members Datasets Scaffolds Average Seq Length
288 197 577 342

Family's Representative Sequence

Representative Sequence 3300044842|Ga0466957_0010692|Ga0466957_0010692_3590_4726
Length 378
Sequence VNRFQLFIYSCDLQSIAYHRQGVKHKYLTKKIMVRIANILLPDFPLLLAPMEDVSDPPFRFVCKQNGADLMYSEFISSEGLIRDAIKSKQKLDFNEFERPFGIQIFGGDEEAMALSARIVDTVQPDLVDINFGCPVKKVVSKGAGAAVLKDVDAMVRLTAAVVKSTTLPVTVKTRLGWDDNSKNIEEVAERLQDVGIKALTIHGRTRAQLYKGEADWTLIAAVKNNPRIHIPIFGNGDIDTPQKALLYKNRYGVDGVMIGRAAIGYPWIFREIKHYLQTGDMLPLPTIEERVEVCRTHAHKSIEWKGEIVGILEMRRHYSNYLKGLPHVKDFRNRLVTVKTLAEVDEILNEVKEKFAGIILERQVIPLSEDQQPACAV

Samples

Sample ID Description Type Environment
1 3300044842 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA2R Metagenome Rhizosphere
2 3300001979 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6 Metagenome Rhizosphere
3 3300001989 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5 Metagenome Rhizosphere
4 3300002738 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mTSA Metagenome Unclassified
5 3300002741 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mCL Metagenome Unclassified
6 3300003215 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF Metagenome Endosphere
7 3300003320 Sugarcane root Sample H2 Metagenome Unclassified
8 3300003322 Sugarcane root Sample L2 Metagenome Unclassified
9 3300003323 Sugarcane root Sample H1 Metagenome Unclassified
10 3300003354 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMS Metagenome Endosphere
11 3300003762 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mMF_r2 Metagenome Endosphere
12 3300003794 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 Metagenome Endosphere
13 3300005262 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMF (version 2) (version 3) Metagenome Endosphere
14 3300005327 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG Metagenome Rhizosphere
15 3300005328 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG Metagenome Rhizosphere
16 3300005333 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-3 metaG Metagenome Rhizosphere
17 3300005335 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG Metagenome Rhizosphere
18 3300005337 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3L metaG Metagenome Rhizosphere
19 3300005338 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 Metagenome Rhizosphere
20 3300005341 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-1 metaG Metagenome Rhizosphere
21 3300005347 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG Metagenome Rhizosphere
22 3300005353 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG Metagenome Rhizosphere
23 3300005364 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG Metagenome Rhizosphere
24 3300005367 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG Metagenome Rhizosphere
25 3300005455 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG Metagenome Rhizosphere
26 3300005457 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG Metagenome Rhizosphere
27 3300005459 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 Metagenome Rhizosphere
28 3300005539 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 Metagenome Rhizosphere
29 3300005543 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG Metagenome Rhizosphere
30 3300005547 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-3 metaG Metagenome Rhizosphere
31 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
32 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
33 3300005577 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 Metagenome Rhizosphere
34 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
35 3300005616 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 Metagenome Rhizosphere
36 3300005617 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 Metagenome Rhizosphere
37 3300005618 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 Metagenome Rhizosphere
38 3300005834 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C1-2 Metagenome Rhizosphere
39 3300005841 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 Metagenome Rhizosphere
40 3300005842 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 Metagenome Rhizosphere
41 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
42 3300006195 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 Metagenome Endosphere
43 3300006358 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 Metagenome Rhizosphere
44 3300006881 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 Metagenome Rhizosphere
45 3300006931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 (version 2) (version 2) Metagenome Rhizosphere
46 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
47 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
48 3300009148 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG Metagenome Rhizosphere
49 3300009174 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG Metagenome Rhizosphere
50 3300009176 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG Metagenome Rhizosphere
51 3300009177 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG Metagenome Rhizosphere
52 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
53 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
54 3300009553 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG Metagenome Rhizosphere
55 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
56 3300013100 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6-5 metaG Metagenome Rhizosphere
57 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
58 3300013296 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG Metagenome Rhizosphere
59 3300013297 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG Metagenome Rhizosphere
60 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
61 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
62 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
63 3300014325 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG Metagenome Rhizosphere
64 3300014326 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG Metagenome Rhizosphere
65 3300014968 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG Metagenome Rhizosphere
66 3300014969 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG Metagenome Rhizosphere
67 3300015265 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-103_1 MetaG Metagenome Rhizosphere
68 3300017792 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG Metagenome Rhizosphere
69 3300021384 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 Metagenome Unclassified
70 3300025208 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mTSA (SPAdes) (version 2) Metagenome Endosphere
71 3300025242 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mTSA_r2 (SPAdes) (version 2) Metagenome Endosphere
72 3300025246 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mTSA (SPAdes) (version 2) Metagenome Unclassified
73 3300025250 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mCL (SPAdes) (version 2) Metagenome Unclassified
74 3300025254 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mMF_r2 (SPAdes) (version 2) Metagenome Endosphere
75 3300025284 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mLB (SPAdes) (version 2) Metagenome Endosphere
76 3300025297 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF (SPAdes) (version 2) Metagenome Endosphere
77 3300025302 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMS (SPAdes) (version 2) Metagenome Endosphere
78 3300025304 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
79 3300025321 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C1-2 (SPAdes) (version 2) Metagenome Rhizosphere
80 3300025893 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
81 3300025903 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
82 3300025904 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2 (SPAdes) (version 2) Metagenome Rhizosphere
83 3300025907 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
84 3300025909 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
85 3300025911 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
86 3300025912 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
87 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
88 3300025917 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
89 3300025921 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
90 3300025923 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
91 3300025924 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
92 3300025938 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 (SPAdes) (version 2) Metagenome Rhizosphere
93 3300025940 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
94 3300025941 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
95 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
96 3300025960 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
97 3300025972 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
98 3300025986 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
99 3300026023 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 (SPAdes) (version 2) Metagenome Rhizosphere
100 3300026035 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes) (version 2) Metagenome Rhizosphere
101 3300026041 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes) (version 2) Metagenome Rhizosphere
102 3300026067 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
103 3300026088 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes) (version 2) Metagenome Rhizosphere
104 3300026089 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes) (version 2) Metagenome Rhizosphere
105 3300026095 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes) (version 2) Metagenome Rhizosphere
106 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
107 3300026142 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes) (version 2) Metagenome Rhizosphere
108 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
109 3300028381 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) Metagenome Rhizosphere
110 3300029957 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-14-19 metaG Metagenome Rhizosphere
111 3300031456 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 15_EM Metagenome Unclassified
112 3300031507 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 10_EM Metagenome Unclassified
113 3300031730 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 19_EM Metagenome Unclassified
114 3300035410 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_12 Metagenome Rhizosphere
115 3300036401 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_16 Metagenome Rhizosphere
116 3300039437 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 v2 Metagenome Unclassified
117 3300041404 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0216DE14Z070717_5272 Metagenome Rhizosphere
118 3300041997 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0317DE14Z082817_5607 Metagenome Rhizosphere
119 3300042007 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0612DE14Z070717_5290 Metagenome Rhizosphere
120 3300042014 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0216WE14Z070717_5275 Metagenome Rhizosphere
121 3300042015 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0503WE14Z070717_5287 Metagenome Rhizosphere
122 3300042135 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0926W_E14_070716_127 Metagenome Rhizosphere
123 3300042876 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9GH_GED Metagenome Rhizosphere
124 3300044656 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA1R Metagenome Rhizosphere
125 3300044658 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC1R Metagenome Rhizosphere
126 3300044684 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC4R Metagenome Rhizosphere
127 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
128 3300044765 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA2R Metagenome Rhizosphere
129 3300045049 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC3R Metagenome Rhizosphere
130 3300046507 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co2_62_14 rhizosphere Metagenome Rhizosphere
131 3300046517 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-470-CL2_38_23 rhizosphere Metagenome Rhizosphere
132 3300046558 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co3_6_53 rhizosphere Metagenome Rhizosphere
133 3300046616 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co1_14_4 rhizosphere Metagenome Rhizosphere
134 3300046648 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co3_15_40 rhizosphere Metagenome Rhizosphere
135 3300046663 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL3_77_6 rhizosphere Metagenome Rhizosphere
136 3300046683 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-904-CL3_91_3 rhizosphere Metagenome Rhizosphere
137 3300046690 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL3_88_3 rhizosphere Metagenome Rhizosphere
138 3300047319 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL1_34_16 rhizosphere Metagenome Rhizosphere
139 3300047472 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co2_54_22 rhizosphere Metagenome Rhizosphere
140 3300048912 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8w unlabeled Metagenome Rhizoplane
141 3300048918 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6d N15 Metagenome Rhizoplane
142 3300048924 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_3e N15 Metagenome Unclassified
143 3300048927 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_4e N15 Metagenome Unclassified
144 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
145 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
146 3300049572 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 Metagenome Rhizosphere
147 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
148 3300049582 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_03 Metagenome Rhizosphere
149 3300049586 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 Metagenome Rhizosphere
150 3300049703 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - J2_A_2_control Metagenome Rhizosphere
151 3300049705 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - C1_A_2_drought Metagenome Rhizosphere
152 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
153 3300049744 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_02 Metagenome Rhizosphere
154 3300049758 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - D15_A_3_drought Metagenome Rhizosphere
155 3300049766 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - E14_B_4_drought Metagenome Rhizosphere
156 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
157 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
158 3300050005 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - E22_A_7_drought Metagenome Rhizosphere
159 3300050493 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 re-annotation Metagenome Endosphere
160 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
161 3300053086 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co2_62_14 endosphere Metagenome Endosphere
162 3300053088 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co1_37_5 endosphere Metagenome Endosphere
163 3300053089 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co1_12_7 endosphere Metagenome Endosphere
164 3300053090 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co3_31_39 endosphere Metagenome Endosphere
165 3300053092 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co3_15_40 endosphere Metagenome Endosphere
166 3300053099 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWA-24-3-Co1_3_5 endosphere Metagenome Endosphere
167 3300053103 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co1_30_3 endosphere Metagenome Endosphere
168 3300053109 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co2_52_27 endosphere Metagenome Endosphere
169 3300053118 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co3_13_34 endosphere Metagenome Endosphere
170 3300053121 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL2_42_16 endosphere Metagenome Endosphere
171 3300053125 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL1_28_5 endosphere Metagenome Endosphere
172 3300053131 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co3_35_48 endosphere Metagenome Endosphere
173 3300053136 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL2_62_7 endosphere Metagenome Endosphere
174 3300053139 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co1_23_3 endosphere Metagenome Endosphere
175 3300053142 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co1_31_6 endosphere Metagenome Endosphere
176 3300053146 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-351-Co2_42_17 endosphere Metagenome Endosphere
177 3300053153 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 endosphere Metagenome Endosphere
178 3300053156 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 endosphere Metagenome Endosphere
179 3300053160 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co2_51_17 endosphere Metagenome Endosphere
180 3300053177 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL1_23_5 endosphere Metagenome Endosphere
181 3300054114 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_03 Metagenome Rhizosphere
182 2738541278 Niastella sp. CF465 Isolate Unclassified
183 2818991442 Chitinophaga pinensis 1204 Isolate Unclassified
184 2818991444 Filimonas endophytica 3197 Isolate Unclassified
185 2821136567 Chitinophaga sancti 1232 Isolate Unclassified
186 2840677318 Chitinophaga alhagiae T22 Isolate Unclassified
187 2883068021 Chitinophaga rhizosphaerae T16R-86 Isolate Rhizosphere
188 2884791551 Chitinophaga oryzae 1310 Isolate Unclassified
189 2896085136 Chitinophaga alhagiae T22 Isolate Unclassified
190 2896109856 Chitinophaga sp. SYP-B3965 Isolate Rhizosphere
191 2904467357 Chitinophaga sancti 3198 Isolate Unclassified
192 2910245624 Adhaeribacter radiodurans KUDC8001 Isolate Rhizosphere
193 2929177148 Chitinophaga sp. R-72269 Hybrid assembly Isolate Unclassified
194 2929239360 Chitinophaga sp. R-73072 Hybrid assembly Isolate Unclassified
195 2945977869 Chitinophaga sp. W2I13 Isolate Rhizosphere
196 2946013367 Chitinophaga sp. W3I9 Isolate Rhizosphere
197 8003151029 Chitinophaga sp. GbtcB8 Isolate Unclassified

Type Distribution

Type Percentage (%)
Metagenomes 93.06
Metatranscriptomes 0
Isolates 6.94

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 19.1
Nodule 0
Rhizoplane 1.04
Rhizosphere 65.97
Stem 0
Stem Tuber 0
Unclassified 7.29

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0466957_0010692 3300044842 Bacteria 5276
2 JGI24740J21852_10010133 3300001979 Bacteria 3646
3 JGI24739J22299_10018980 3300001989 Bacteria 2466
4 JGI25154J39366_1000002 3300002738 Bacteria 466942
5 JGI25154J39366_1000078 3300002738 Bacteria 90241
6 JGI25157J39369_1001797 3300002741 Bacteria 6893
7 JGI25153J46596_10003299 3300003215 Bacteria 9064
8 rootH2_10128092 3300003320 Bacteria 2106
9 rootL2_10008865 3300003322 Bacteria 21299
10 rootL2_10026021 3300003322 Bacteria 20401
11 rootL2_10048900 3300003322 Bacteria 2172
12 rootL2_10051414 3300003322 Bacteria 7429
13 rootL2_10057063 3300003322 Bacteria 6670
14 rootL2_10080735 3300003322 Bacteria 1274
15 rootL2_10190497 3300003322 Bacteria 6365
16 rootH1_10013458 3300003316 Bacteria 8685
17 rootH1_10013458 3300003323 Bacteria 9160
18 JGI25160J50197_1005416 3300003354 Bacteria 5314
19 JGI25160J50197_1008370 3300003354 Bacteria 3947
20 Ga0055542_1004946 3300003762 Bacteria 3100
21 Ga0055542_1005064 3300003762 Bacteria 3044
22 Ga0055531_10000895 3300003794 Bacteria 24374
23 Ga0065165_1025519 3300005262 Bacteria 1963
24 Ga0070658_10000563 3300005327 Bacteria 32232
25 Ga0070676_10000218 3300005328 Bacteria 24620
26 Ga0070677_10042456 3300005333 Bacteria 1801
27 Ga0070666_10000969 3300005335 Bacteria 17521
28 Ga0070682_100002600 3300005337 Bacteria 9974
29 Ga0068868_100000770 3300005338 Bacteria 21666
30 Ga0070691_10002629 3300005341 Bacteria 8003
31 Ga0070668_100000110 3300005347 Bacteria 50766
32 Ga0070669_100012698 3300005353 Bacteria 5979
33 Ga0070673_100000676 3300005364 Bacteria 18803
34 Ga0070673_100319725 3300005364 Bacteria 1371
35 Ga0070667_100000867 3300005367 Bacteria 28069
36 Ga0070667_100290224 3300005367 Bacteria 1471
37 Ga0070663_100133112 3300005455 Unclassified 1890
38 Ga0070662_100228313 3300005457 Unclassified 1488
39 Ga0068867_100003758 3300005459 Bacteria 10690
40 Ga0068853_100003579 3300005539 Bacteria 11897
41 Ga0068853_100014219 3300005539 Bacteria 6513
42 Ga0070672_100000020 3300005543 Bacteria 69277
43 Ga0070693_100046374 3300005547 Bacteria 2468
44 Ga0070665_100000318 3300005548 Bacteria 74326
45 Ga0068855_100024105 3300005563 Bacteria 7284
46 Ga0068855_100030726 3300005563 Bacteria 6422
47 Ga0068855_100058401 3300005563 Unclassified 4518
48 Ga0068855_100068771 3300005563 Unclassified 4122
49 Ga0068857_100002998 3300005577 Bacteria 13931
50 Ga0068856_100008593 3300005614 Bacteria 9930
51 Ga0068856_100080480 3300005614 Bacteria 3231
52 Ga0068856_100098986 3300005614 Unclassified 2907
53 Ga0068852_100004000 3300005616 Bacteria 10363
54 Ga0068852_100004838 3300005616 Bacteria 9569
55 Ga0068852_100022208 3300005616 Bacteria 5085
56 Ga0068859_100464468 3300005617 Bacteria 1361
57 Ga0068864_100000934 3300005618 Bacteria 24494
58 Ga0068851_10000637 3300005834 Bacteria 14933
59 Ga0068863_100000678 3300005841 Bacteria 34425
60 Ga0068858_100001487 3300005842 Bacteria 24140
61 Ga0068860_100001650 3300005843 Bacteria 23869
62 Ga0075366_10002122 3300006195 Bacteria 10083
63 Ga0075366_10027380 3300006195 Bacteria 3344
64 Ga0068871_100001813 3300006358 Bacteria 14409
65 Ga0068865_100000289 3300006881 Bacteria 27735
66 Ga0097620_100464474 3300006931 Bacteria 1361
67 Ga0105240_10038623 3300009093 Bacteria 6122
68 Ga0114129_10003677 3300009147 Bacteria 21578
69 Ga0114129_10004777 3300009147 Bacteria 19148
70 Ga0105243_10396973 3300009148 Unclassified 1280
71 Ga0105241_10001839 3300009174 Bacteria 16088
72 Ga0105241_10008421 3300009174 Bacteria 7584
73 Ga0105242_10208467 3300009176 Bacteria 1740
74 Ga0105248_10004712 3300009177 Bacteria 15092
75 Ga0105237_10027333 3300009545 Bacteria 5825
76 Ga0105237_10066445 3300009545 Bacteria 3601
77 Ga0105238_10063840 3300009551 Bacteria 3683
78 Ga0105238_10066991 3300009551 Unclassified 3592
79 Ga0105249_10011326 3300009553 Bacteria 7829
80 Ga0105239_10000456 3300010375 Bacteria 59689
81 Ga0105239_10000713 3300010375 Bacteria 47121
82 Ga0105239_10003267 3300010375 Bacteria 20002
83 Ga0105239_10105132 3300010375 Bacteria 3126
84 Ga0105239_10285638 3300010375 Bacteria 1858
85 Ga0157373_10000927 3300013100 Bacteria 22674
86 Ga0157373_10027828 3300013100 Bacteria 4079
87 Ga0157369_10023841 3300013105 Bacteria 6813
88 Ga0157374_10001355 3300013296 Bacteria 20853
89 Ga0157378_10010860 3300013297 Bacteria 7964
90 Ga0163162_10001474 3300013306 Bacteria 21898
91 Ga0163162_10022454 3300013306 Bacteria 6216
92 Ga0163162_10109908 3300013306 Unclassified 2854
93 Ga0157372_10006174 3300013307 Bacteria 12740
94 Ga0157372_10015151 3300013307 Bacteria 8252
95 Ga0157372_10162312 3300013307 Unclassified 2583
96 Ga0157375_10001533 3300013308 Bacteria 19889
97 Ga0157375_10022119 3300013308 Bacteria 5848
98 Ga0163163_10000963 3300014325 Bacteria 24470
99 Ga0163163_10317983 3300014325 Bacteria 1610
100 Ga0157380_10198108 3300014326 Bacteria 1779
101 Ga0157379_10000115 3300014968 Bacteria 55499
102 Ga0157376_10000739 3300014969 Bacteria 21229
103 Ga0157376_10101839 3300014969 Unclassified 2511
104 Ga0157376_10208760 3300014969 Bacteria 1802
105 Ga0182005_1000347 3300015265 Bacteria 26332
106 Ga0163161_10017400 3300017792 Bacteria 5030
107 Ga0213876_10000680 3300021384 Bacteria 24189
108 Ga0209436_100989 3300025208 Bacteria 10961
109 Ga0209436_101020 3300025208 Bacteria 10729
110 Ga0209258_100116 3300025242 Bacteria 190317
111 Ga0209258_100315 3300025242 Bacteria 75151
112 Ga0209646_1000004 3300025246 Bacteria 786587
113 Ga0209646_1000005 3300025246 Bacteria 717627
114 Ga0209646_1000712 3300025246 Bacteria 11902
115 Ga0209026_1000136 3300025250 Bacteria 116507
116 Ga0209026_1000154 3300025250 Bacteria 108964
117 Ga0209148_1000175 3300025254 Bacteria 129536
118 Ga0209148_1000322 3300025254 Bacteria 66549
119 Ga0209130_1003198 3300025284 Bacteria 7231
120 Ga0209758_1006380 3300025297 Bacteria 8514
121 Ga0209758_1024939 3300025297 Bacteria 2643
122 Ga0207426_1000024 3300025302 Bacteria 534075
123 Ga0207426_1000139 3300025302 Bacteria 195835
124 Ga0207426_1000150 3300025302 Bacteria 186352
125 Ga0207426_1001807 3300025302 Bacteria 15872
126 Ga0209257_1000004 3300025304 Bacteria 1678347
127 Ga0209257_1000013 3300025304 Bacteria 1047305
128 Ga0207656_10000963 3300025321 Bacteria 9420
129 Ga0207682_10003730 3300025893 Bacteria 6556
130 Ga0207680_10001579 3300025903 Bacteria 10735
131 Ga0207647_10040629 3300025904 Unclassified 2928
132 Ga0207645_10001052 3300025907 Bacteria 22849
133 Ga0207705_10001524 3300025909 Bacteria 18386
134 Ga0207654_10071038 3300025911 Bacteria 2068
135 Ga0207707_10000747 3300025912 Bacteria 32068
136 Ga0207695_10000077 3300025913 Bacteria 307107
137 Ga0207695_10049731 3300025913 Unclassified 4415
138 Ga0207695_10052129 3300025913 Bacteria 4289
139 Ga0207660_10002113 3300025917 Bacteria 13186
140 Ga0207652_10002726 3300025921 Bacteria 14817
141 Ga0207681_10018800 3300025923 Bacteria 4359
142 Ga0207681_10045932 3300025923 Bacteria 2936
143 Ga0207694_10049164 3300025924 Unclassified 3264
144 Ga0207704_10026164 3300025938 Unclassified 3197
145 Ga0207691_10000673 3300025940 Bacteria 33764
146 Ga0207691_10161290 3300025940 Bacteria 1967
147 Ga0207711_10115078 3300025941 Unclassified 2396
148 Ga0207667_10012408 3300025949 Bacteria 9821
149 Ga0207667_10015552 3300025949 Bacteria 8636
150 Ga0207667_10053342 3300025949 Unclassified 4255
151 Ga0207651_10003454 3300025960 Bacteria 7766
152 Ga0207668_10000344 3300025972 Bacteria 30213
153 Ga0207658_10002261 3300025986 Bacteria 14251
154 Ga0207658_10224604 3300025986 Bacteria 1582
155 Ga0207677_10001511 3300026023 Bacteria 12283
156 Ga0207703_10002925 3300026035 Bacteria 14532
157 Ga0207639_10010437 3300026041 Bacteria 6435
158 Ga0207639_10070120 3300026041 Bacteria 2737
159 Ga0207678_10161692 3300026067 Unclassified 1912
160 Ga0207641_10002528 3300026088 Bacteria 16844
161 Ga0207648_10004291 3300026089 Bacteria 14693
162 Ga0207648_10229745 3300026089 Unclassified 1650
163 Ga0207676_10004844 3300026095 Bacteria 9539
164 Ga0207674_10006517 3300026116 Bacteria 13723
165 Ga0207674_10317430 3300026116 Bacteria 1507
166 Ga0207698_10025615 3300026142 Unclassified 4158
167 Ga0207698_10050196 3300026142 Unclassified 3181
168 Ga0268266_10002881 3300028379 Bacteria 17872
169 Ga0268264_10004052 3300028381 Bacteria 12539
170 Ga0268264_10007983 3300028381 Bacteria 8806
171 Ga0265324_10037569 3300029957 Bacteria 1682
172 Ga0307513_10153963 3300031456 Bacteria 2202
173 Ga0307513_10213607 3300031456 Bacteria 1758
174 Ga0307509_10016901 3300031507 Bacteria 8417
175 Ga0307516_10003458 3300031730 Bacteria 20249
176 Ga0373924_0063514 3300035410 Bacteria 1549
177 Ga0373937_0195910 3300036401 Bacteria 1899
178 Ga0373937_0353014 3300036401 Bacteria 1393
179 Ga0436365_1468940 3300039437 Bacteria 37650
180 Ga0439436_0009285 3300041404 Bacteria 3014
181 Ga0439431_0001808 3300041997 Bacteria 4731
182 Ga0439431_0012719 3300041997 Bacteria 1937
183 Ga0439449_0015256 3300042007 Bacteria 2886
184 Ga0439457_000748 3300042014 Bacteria 9679
185 Ga0439457_009573 3300042014 Bacteria 2252
186 Ga0439462_0005853 3300042015 Bacteria 3044
187 Ga0450899_008024 3300042135 Bacteria 1153
188 Ga0451577_0026427 3300042876 Bacteria 5259
189 Ga0466969_0000687 3300044656 Bacteria 18406
190 Ga0466972_0000023 3300044658 Bacteria 192679
191 Ga0466972_0000082 3300044658 Bacteria 88592
192 Ga0466972_0069538 3300044658 Bacteria 1681
193 Ga0466972_0090916 3300044658 Bacteria 1448
194 Ga0466966_0000015 3300044684 Bacteria 127402
195 Ga0466966_0000573 3300044684 Bacteria 23430
196 Ga0453684_0011435 3300044712 Bacteria 14889
197 Ga0466970_0105104 3300044765 Bacteria 1540
198 Ga0466957_0001007 3300044842 Bacteria 14506
199 Ga0466959_0000030 3300045049 Bacteria 111343
200 Ga0466959_0000143 3300045049 Bacteria 46604
201 Ga0466959_0009265 3300045049 Bacteria 6997
202 Ga0495606_0042820 3300046507 Bacteria 3025
203 Ga0495630_0123373 3300046517 Bacteria 1966
204 Ga0495633_0000116 3300046558 Bacteria 108667
205 Ga0495668_0000099 3300046616 Bacteria 137915
206 Ga0495668_0009844 3300046616 Bacteria 5834
207 Ga0495668_0064682 3300046616 Bacteria 2013
208 Ga0495611_0000528 3300046648 Bacteria 22590
209 Ga0495635_0149440 3300046663 Bacteria 1590
210 Ga0495658_0011421 3300046683 Bacteria 4467
211 Ga0495624_0146174 3300046690 Bacteria 1447
212 Ga0495674_0385752 3300047319 Bacteria 1133
213 Ga0495686_0000373 3300047472 Bacteria 71977
214 Ga0496109_0055175 3300048912 Unclassified 3625
215 Ga0496115_0013605 3300048918 Bacteria 6157
216 Ga0496115_0100989 3300048918 Bacteria 2365
217 Ga0496121_0000007 3300048924 Bacteria 942516
218 Ga0496121_0000081 3300048924 Bacteria 229506
219 Ga0496124_0080170 3300048927 Bacteria 2687
220 Ga0496126_0053623 3300048929 Bacteria 3657
221 Ga0501034_0022636 3300049571 Bacteria 6402
222 Ga0501036_0276399 3300049572 Bacteria 1406
223 Ga0501047_0053464 3300049581 Bacteria 3905
224 Ga0501048_0067268 3300049582 Bacteria 2533
225 Ga0501070_0172832 3300049586 Bacteria 1779
226 Ga0501219_000178 3300049703 Bacteria 11731
227 Ga0501225_0002544 3300049705 Bacteria 5628
228 Ga0501080_0045346 3300049742 Bacteria 4092
229 Ga0501080_0079733 3300049742 Bacteria 3044
230 Ga0501083_0115732 3300049744 Bacteria 1760
231 Ga0501083_0196653 3300049744 Bacteria 1316
232 Ga0501241_002353 3300049758 Bacteria 3660
233 Ga0501269_004153 3300049766 Bacteria 1744
234 Ga0501035_0443054 3300049822 Bacteria 1075
235 Ga0501044_0001506 3300049823 Bacteria 27312
236 Ga0501284_00036 3300050005 Bacteria 57905
237 nmdc:mga0k408_23714_c1 3300050493 Bacteria 3464
238 nmdc:mga05p37_9161_c1 3300050507 Bacteria 11701
239 Ga0500578_0000063 3300053086 Bacteria 117869
240 Ga0500644_0000070 3300053088 Bacteria 61261
241 Ga0500644_0044450 3300053088 Bacteria 1491
242 Ga0500581_079010 3300053089 Bacteria 1645
243 Ga0500646_0008235 3300053090 Bacteria 2667
244 Ga0500646_0044003 3300053090 Bacteria 1266
245 Ga0500583_0000033 3300053092 Bacteria 99894
246 Ga0500583_0000076 3300053092 Bacteria 59162
247 Ga0500583_0000266 3300053092 Bacteria 18506
248 Ga0500654_099819 3300053099 Bacteria 1245
249 Ga0500555_018603 3300053103 Bacteria 2003
250 Ga0500569_001758 3300053109 Bacteria 4152
251 Ga0500594_0034434 3300053118 Bacteria 1353
252 Ga0500607_015906 3300053121 Bacteria 4328
253 Ga0500618_003494 3300053125 Bacteria 5362
254 Ga0500652_096662 3300053131 Bacteria 1234
255 Ga0500559_0009645 3300053136 Bacteria 4169
256 Ga0500568_0022491 3300053139 Bacteria 2695
257 Ga0500577_0001728 3300053142 Bacteria 5597
258 Ga0500577_0001916 3300053142 Bacteria 5329
259 Ga0500588_0017115 3300053146 Bacteria 1887
260 Ga0500616_0005269 3300053153 Bacteria 8838
261 Ga0500616_0012229 3300053153 Bacteria 5027
262 Ga0500622_0000212 3300053156 Bacteria 61612
263 Ga0500622_0002009 3300053156 Bacteria 15200
264 Ga0500622_0021256 3300053156 Bacteria 3445
265 Ga0500633_0009207 3300053160 Bacteria 2585
266 Ga0500633_0030151 3300053160 Bacteria 1741
267 Ga0500636_0020052 3300053177 Bacteria 3955
268 Ga0500636_0041804 3300053177 Bacteria 2711
269 Ga0501084_0253476 3300054114 Bacteria 1485
270 2738725620 2738541278 Bacteria 9755573
271 2819575031 2818991442 Bacteria 8318214
272 2819590918 2818991444 Bacteria 6968812
273 2821141128 2821136567 Bacteria 8080116
274 2840678741 2840677318 Bacteria 2664183
275 2883071691 2883068021 Bacteria 6192739
276 2884792167 2884791551 Bacteria 8511252
277 2884796832 2884791551 Bacteria 8511252
278 2896086559 2896085136 Bacteria 6129793
279 2896113140 2896109856 Bacteria 7140722
280 2904471629 2904467357 Bacteria 8057758
281 2910246848 2910245624 Bacteria 6935613
282 2929177650 2929177148 Bacteria 7883697
283 2929181844 2929177148 Bacteria 7883697
284 2929242650 2929239360 Bacteria 7745570
285 2945980000 2945977869 Bacteria 7777518
286 2945984239 2945977869 Bacteria 7777518
287 2946014140 2946013367 Bacteria 7766675
288 2946016367 2946013367 Bacteria 7766675
289 8003152719 8003151029 Bacteria 8187759
290 Ga0466957_0010692
291 JGI24740J21852_10010133
292 JGI24739J22299_10018980
293 JGI25154J39366_1000002
294 JGI25154J39366_1000078
295 JGI25157J39369_1001797
296 JGI25153J46596_10003299
297 rootH2_10128092
298 rootL2_10008865
299 rootL2_10026021
300 rootL2_10048900
301 rootL2_10051414
302 rootL2_10057063
303 rootL2_10080735
304 rootL2_10190497
305 rootH1_10013458
306 JGI25160J50197_1005416
307 JGI25160J50197_1008370
308 Ga0055542_1004946
309 Ga0055542_1005064
310 Ga0055531_10000895
311 Ga0065165_1025519
312 Ga0070658_10000563
313 Ga0070676_10000218
314 Ga0070677_10042456
315 Ga0070666_10000969
316 Ga0070682_100002600
317 Ga0068868_100000770
318 Ga0070691_10002629
319 Ga0070668_100000110
320 Ga0070669_100012698
321 Ga0070673_100000676
322 Ga0070673_100319725
323 Ga0070667_100000867
324 Ga0070667_100290224
325 Ga0070663_100133112
326 Ga0070662_100228313
327 Ga0068867_100003758
328 Ga0068853_100003579
329 Ga0068853_100014219
330 Ga0070672_100000020
331 Ga0070693_100046374
332 Ga0070665_100000318
333 Ga0068855_100024105
334 Ga0068855_100030726
335 Ga0068855_100058401
336 Ga0068855_100068771
337 Ga0068857_100002998
338 Ga0068856_100008593
339 Ga0068856_100080480
340 Ga0068856_100098986
341 Ga0068852_100004000
342 Ga0068852_100004838
343 Ga0068852_100022208
344 Ga0068859_100464468
345 Ga0068864_100000934
346 Ga0068851_10000637
347 Ga0068863_100000678
348 Ga0068858_100001487
349 Ga0068860_100001650
350 Ga0075366_10002122
351 Ga0075366_10027380
352 Ga0068871_100001813
353 Ga0068865_100000289
354 Ga0097620_100464474
355 Ga0105240_10038623
356 Ga0114129_10003677
357 Ga0114129_10004777
358 Ga0105243_10396973
359 Ga0105241_10001839
360 Ga0105241_10008421
361 Ga0105242_10208467
362 Ga0105248_10004712
363 Ga0105237_10027333
364 Ga0105237_10066445
365 Ga0105238_10063840
366 Ga0105238_10066991
367 Ga0105249_10011326
368 Ga0105239_10000456
369 Ga0105239_10000713
370 Ga0105239_10003267
371 Ga0105239_10105132
372 Ga0105239_10285638
373 Ga0157373_10000927
374 Ga0157373_10027828
375 Ga0157369_10023841
376 Ga0157374_10001355
377 Ga0157378_10010860
378 Ga0163162_10001474
379 Ga0163162_10022454
380 Ga0163162_10109908
381 Ga0157372_10006174
382 Ga0157372_10015151
383 Ga0157372_10162312
384 Ga0157375_10001533
385 Ga0157375_10022119
386 Ga0163163_10000963
387 Ga0163163_10317983
388 Ga0157380_10198108
389 Ga0157379_10000115
390 Ga0157376_10000739
391 Ga0157376_10101839
392 Ga0157376_10208760
393 Ga0182005_1000347
394 Ga0163161_10017400
395 Ga0213876_10000680
396 Ga0209436_100989
397 Ga0209436_101020
398 Ga0209258_100116
399 Ga0209258_100315
400 Ga0209646_1000004
401 Ga0209646_1000005
402 Ga0209646_1000712
403 Ga0209026_1000136
404 Ga0209026_1000154
405 Ga0209148_1000175
406 Ga0209148_1000322
407 Ga0209130_1003198
408 Ga0209758_1006380
409 Ga0209758_1024939
410 Ga0207426_1000024
411 Ga0207426_1000139
412 Ga0207426_1000150
413 Ga0207426_1001807
414 Ga0209257_1000004
415 Ga0209257_1000013
416 Ga0207656_10000963
417 Ga0207682_10003730
418 Ga0207680_10001579
419 Ga0207647_10040629
420 Ga0207645_10001052
421 Ga0207705_10001524
422 Ga0207654_10071038
423 Ga0207707_10000747
424 Ga0207695_10000077
425 Ga0207695_10049731
426 Ga0207695_10052129
427 Ga0207660_10002113
428 Ga0207652_10002726
429 Ga0207681_10018800
430 Ga0207681_10045932
431 Ga0207694_10049164
432 Ga0207704_10026164
433 Ga0207691_10000673
434 Ga0207691_10161290
435 Ga0207711_10115078
436 Ga0207667_10012408
437 Ga0207667_10015552
438 Ga0207667_10053342
439 Ga0207651_10003454
440 Ga0207668_10000344
441 Ga0207658_10002261
442 Ga0207658_10224604
443 Ga0207677_10001511
444 Ga0207703_10002925
445 Ga0207639_10010437
446 Ga0207639_10070120
447 Ga0207678_10161692
448 Ga0207641_10002528
449 Ga0207648_10004291
450 Ga0207648_10229745
451 Ga0207676_10004844
452 Ga0207674_10006517
453 Ga0207674_10317430
454 Ga0207698_10025615
455 Ga0207698_10050196
456 Ga0268266_10002881
457 Ga0268264_10004052
458 Ga0268264_10007983
459 Ga0265324_10037569
460 Ga0307513_10153963
461 Ga0307513_10213607
462 Ga0307509_10016901
463 Ga0307516_10003458
464 Ga0373924_0063514
465 Ga0373937_0195910
466 Ga0373937_0353014
467 Ga0436365_1468940
468 Ga0439436_0009285
469 Ga0439431_0001808
470 Ga0439431_0012719
471 Ga0439449_0015256
472 Ga0439457_000748
473 Ga0439457_009573
474 Ga0439462_0005853
475 Ga0450899_008024
476 Ga0451577_0026427
477 Ga0466969_0000687
478 Ga0466972_0000023
479 Ga0466972_0000082
480 Ga0466972_0069538
481 Ga0466972_0090916
482 Ga0466966_0000015
483 Ga0466966_0000573
484 Ga0453684_0011435
485 Ga0466970_0105104
486 Ga0466957_0001007
487 Ga0466959_0000030
488 Ga0466959_0000143
489 Ga0466959_0009265
490 Ga0495606_0042820
491 Ga0495630_0123373
492 Ga0495633_0000116
493 Ga0495668_0000099
494 Ga0495668_0009844
495 Ga0495668_0064682
496 Ga0495611_0000528
497 Ga0495635_0149440
498 Ga0495658_0011421
499 Ga0495624_0146174
500 Ga0495674_0385752
501 Ga0495686_0000373
502 Ga0496109_0055175
503 Ga0496115_0013605
504 Ga0496115_0100989
505 Ga0496121_0000007
506 Ga0496121_0000081
507 Ga0496124_0080170
508 Ga0496126_0053623
509 Ga0501034_0022636
510 Ga0501036_0276399
511 Ga0501047_0053464
512 Ga0501048_0067268
513 Ga0501070_0172832
514 Ga0501219_000178
515 Ga0501225_0002544
516 Ga0501080_0045346
517 Ga0501080_0079733
518 Ga0501083_0115732
519 Ga0501083_0196653
520 Ga0501241_002353
521 Ga0501269_004153
522 Ga0501035_0443054
523 Ga0501044_0001506
524 Ga0501284_00036
525 nmdc:mga0k408_23714_c1
526 nmdc:mga05p37_9161_c1
527 Ga0500578_0000063
528 Ga0500644_0000070
529 Ga0500644_0044450
530 Ga0500581_079010
531 Ga0500646_0008235
532 Ga0500646_0044003
533 Ga0500583_0000033
534 Ga0500583_0000076
535 Ga0500583_0000266
536 Ga0500654_099819
537 Ga0500555_018603
538 Ga0500569_001758
539 Ga0500594_0034434
540 Ga0500607_015906
541 Ga0500618_003494
542 Ga0500652_096662
543 Ga0500559_0009645
544 Ga0500568_0022491
545 Ga0500577_0001728
546 Ga0500577_0001916
547 Ga0500588_0017115
548 Ga0500616_0005269
549 Ga0500616_0012229
550 Ga0500622_0000212
551 Ga0500622_0002009
552 Ga0500622_0021256
553 Ga0500633_0009207
554 Ga0500633_0030151
555 Ga0500636_0020052
556 Ga0500636_0041804
557 Ga0501084_0253476
558 2738725620
559 2819575031
560 2819590918
561 2821141128
562 2840678741
563 2883071691
564 2884792167
565 2884796832
566 2896086559
567 2896113140
568 2904471629
569 2910246848
570 2929177650
571 2929181844
572 2929242650
573 2945980000
574 2945984239
575 2946014140
576 2946016367
577 8003152719

MSA Aligner

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Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF01207

Dus

Dihydrouridine synthase (Dus)

47

358

0.97

Structural Annotation

Top 5 Hits

ID Description Score Start End
1vhn-assembly1.cif.gz_A crystal structure of a putative flavin oxidoreductase with flavin 0.9403 13 323
1vhn-assembly1.cif.gz_A crystal structure of a putative flavin oxidoreductase with flavin 0.9285 13 323
6ei9-assembly2.cif.gz_B crystal structure of e. coli trna-dihydrouridine synthase b (dusb) 0.9243 2 319
6ei9-assembly2.cif.gz_B crystal structure of e. coli trna-dihydrouridine synthase b (dusb) 0.8931 2 319
3b0p-assembly1.cif.gz_A trna-dihydrouridine synthase from thermus thermophilus 0.8416 10 323
ID Description Score Start End Superfamily
af_P0ABT5_6_247_3.20.20.70 Alpha Beta;Alpha-Beta Barrel;TIM Barrel;Aldolase class I 0.9603 14 251 3.20.20.70
1vhnA01 Alpha Beta;Alpha-Beta Barrel;TIM Barrel;Aldolase class I 0.9466 13 253 3.20.20.70
af_Q54ES7_56_285_3.20.20.70 Alpha Beta;Alpha-Beta Barrel;TIM Barrel;Aldolase class I 0.9412 15 238 3.20.20.70
1vhnA01 Alpha Beta;Alpha-Beta Barrel;TIM Barrel;Aldolase class I 0.9388 13 253 3.20.20.70
af_Q9VIS4_253_495_3.20.20.70 Alpha Beta;Alpha-Beta Barrel;TIM Barrel;Aldolase class I 0.9339 11 243 3.20.20.70
ID Description Score Start End GO Terms
AF-S7VFR4-F1-model_v4 tRNA dihydrouridine synthase B (EC 1.-.-.-) 0.9934 226 329 GO:0016491
AF-S7VFR4-F1-model_v4 tRNA dihydrouridine synthase B (EC 1.-.-.-) 0.984 226 329 GO:0016491
AF-A0A090WNH1-F1-model_v4 tRNA-dihydrouridine synthase (EC 1.3.1.-) 0.9802 1 279 GO:0003723
GO:0017150
GO:0050660
AF-A0A4Q3W6G6-F1-model_v4 tRNA-dihydrouridine synthase family protein 0.9799 1 224 GO:0003723
GO:0017150
GO:0050660
AF-A0A7Y3CZC3-F1-model_v4 tRNA dihydrouridine synthase DusB 0.978 198 330 GO:0003723
GO:0017150

Map