F388808

General Info

Members Datasets Scaffolds Average Seq Length
288 224 577 391

Family's Representative Sequence

Representative Sequence 3300047469|Ga0495673_0001909|Ga0495673_0001909_5931_7208
Length 425
Sequence MVRDLCAAAGASAQRSTLTLDVPALGLEQEWYMSREVVVLSAVRTAIGTFGGSLKDVPLRTLATTVVREALLRSEVDPELVGHVVMGNVIPTGPDDAYLSRIAGVDAGIPFHVPAFNVNRLCGSGLQAIVSAAQSILLGDTDFAVAGGAESMSRGPYIQTSARWGARLGDVQSIDYTLGILHDPWKHIHMGMTAENVAQRFGITREVQDSLALESQRRAARAIAEGRFDGQIVPVEIKTRKGVSSFCVDEHVRADVTMEQLARMKPAFKFDGLVTAGNSSGINDGASALVLAEASSAKAQGLKPLARLIGYAHAGVDPDYMGIGPLAATRLLLQRTGLKITDLDVIEANEAFAAQACAVIQELGLDPDKVNPNGSGISLGHPVGATGALISTKAIHELRRVGGRYALVTLCIGGGQGIAAIFERV

Samples

Sample ID Description Type Environment
1 3300047469 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co3_31_39 rhizosphere Metagenome Rhizosphere
2 3300002705 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mMS Metagenome Unclassified
3 3300002773 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMS Metagenome Endosphere
4 3300002774 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mTSA Metagenome Endosphere
5 3300003187 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mLB Metagenome Endosphere
6 3300003316 Sugarcane root Sample L1 Metagenome Unclassified
7 3300003374 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMF Metagenome Endosphere
8 3300003578 Arabidopsis root microbial communities from the University of North Carolina, USA - metaT NBMF1_36_input_d2 (Metagenome Metatranscriptome, Counting Only) Metatranscriptome Unclassified
9 3300003761 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mTSA_r2 Metagenome Endosphere
10 3300003762 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mMF_r2 Metagenome Endosphere
11 3300003791 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 Metagenome Endosphere
12 3300003794 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 Metagenome Endosphere
13 3300005288 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Rhizosphere Soil Replicate 2: eDNA_1 v2 (version 2) Metagenome Rhizosphere
14 3300005289 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 v2 (version 2) Metagenome Rhizosphere
15 3300005327 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG Metagenome Rhizosphere
16 3300005353 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG Metagenome Rhizosphere
17 3300005459 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 Metagenome Rhizosphere
18 3300005467 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG Metagenome Rhizosphere
19 3300005468 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG Metagenome Rhizosphere
20 3300005471 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG Metagenome Rhizosphere
21 3300005536 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG Metagenome Rhizosphere
22 3300005539 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 Metagenome Rhizosphere
23 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
24 3300005564 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG Metagenome Rhizosphere
25 3300005617 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 Metagenome Rhizosphere
26 3300005834 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C1-2 Metagenome Rhizosphere
27 3300005937 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1 Metagenome Rhizosphere
28 3300006028 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG Metagenome Rhizosphere
29 3300006051 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 Metagenome Endosphere
30 3300006195 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 Metagenome Endosphere
31 3300006353 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 Metagenome Endosphere
32 3300006846 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 Metagenome Rhizosphere
33 3300006931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 (version 2) (version 2) Metagenome Rhizosphere
34 3300006946 Root nodule microbial communities of legume samples collected from California, USA - Medicago truncatula BG Metagenome Nodule
35 3300009011 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-4 metaG Metagenome Rhizosphere
36 3300009092 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-4 metaG Metagenome Rhizosphere
37 3300009148 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG Metagenome Rhizosphere
38 3300009176 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG Metagenome Rhizosphere
39 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
40 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
41 3300011119 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG Metagenome Rhizosphere
42 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
43 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
44 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
45 3300014497 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-129_1 metaG Metagenome Rhizosphere
46 3300015261 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-104_1 MetaG Metagenome Rhizosphere
47 3300015262 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-113_1 MetaG Metagenome Rhizosphere
48 3300017792 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG Metagenome Rhizosphere
49 3300025225 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mTSA_r2 (SPAdes) (version 2) Metagenome Endosphere
50 3300025228 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mMS_r2 (SPAdes) (version 2) Metagenome Endosphere
51 3300025229 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mLB_r2 (SPAdes) (version 2) Metagenome Endosphere
52 3300025242 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mTSA_r2 (SPAdes) (version 2) Metagenome Endosphere
53 3300025245 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mTSA (SPAdes) (version 3) Metagenome Endosphere
54 3300025254 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mMF_r2 (SPAdes) (version 2) Metagenome Endosphere
55 3300025256 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mMS (SPAdes) (version 2) Metagenome Unclassified
56 3300025258 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMS (SPAdes) (version 3) Metagenome Endosphere
57 3300025263 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mTSA_r2 (SPAdes) (version 3) Metagenome Endosphere
58 3300025272 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
59 3300025273 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMS_r2 (SPAdes) (version 3) Metagenome Endosphere
60 3300025284 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mLB (SPAdes) (version 2) Metagenome Endosphere
61 3300025291 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mLB_r2 (SPAdes) (version 3) Metagenome Endosphere
62 3300025292 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mLB_r2 (SPAdes) (version 2) Metagenome Endosphere
63 3300025294 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mLB (SPAdes) (version 2) Metagenome Endosphere
64 3300025295 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMF_r2 (SPAdes) (version 3) Metagenome Endosphere
65 3300025297 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF (SPAdes) (version 2) Metagenome Endosphere
66 3300025298 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 (SPAdes) (version 2) Metagenome Endosphere
67 3300025299 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mCL_r2 (SPAdes) (version 3) Metagenome Endosphere
68 3300025302 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMS (SPAdes) (version 2) Metagenome Endosphere
69 3300025303 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mMS_r2 (SPAdes) (version 2) Metagenome Endosphere
70 3300025304 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
71 3300025321 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C1-2 (SPAdes) (version 2) Metagenome Rhizosphere
72 3300025909 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
73 3300025910 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
74 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
75 3300025922 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
76 3300025923 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
77 3300025933 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
78 3300025934 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
79 3300025935 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
80 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
81 3300026041 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes) (version 2) Metagenome Rhizosphere
82 3300026089 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes) (version 2) Metagenome Rhizosphere
83 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
84 3300026121 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
85 3300027111 Root nodule microbial communities of legume samples collected from California, USA - Medicago truncatula BG (SPAdes) (version 2) Metagenome Nodule
86 3300027471 Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M3 AM (SPAdes) (version 2) Metagenome Rhizosphere
87 3300027876 Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M3 S PM (SPAdes) (version 2) Metagenome Rhizosphere
88 3300027907 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes) (version 3) Metagenome Rhizosphere
89 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
90 3300028800 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG Metagenome Rhizosphere
91 3300030731 Rhizosphere soil microbial communities in infected wheat plant from Wellcamp field in Toowoomba, Australia - sample 3 Metagenome Rhizosphere
92 3300030732 Rhizosphere soil microbial communities in infected wheat plant from Wellcamp field in Toowoomba, Australia - sample 1 Metagenome Rhizosphere
93 3300030742 Rhizosphere soil microbial communities in a healthy wheat plant from a non-infected Wellcamp field in Toowoomba, Australia - sample 9 Metagenome Rhizosphere
94 3300030745 Rhizosphere soil microbial communities in a healthy wheat plant from a non-infected Wellcamp field in Toowoomba, Australia - sample 8 Metagenome Rhizosphere
95 3300031344 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-5-22 metaG Metagenome Rhizosphere
96 3300031731 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-1 Metagenome Rhizosphere
97 3300031824 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-2 Metagenome Rhizosphere
98 3300035691 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_NoN_4 Metagenome Rhizosphere
99 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
100 3300039447 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2 v2 Metagenome Rhizosphere
101 3300042145 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - SB0430D_E14_080116_2581 Metagenome Rhizosphere
102 3300042531 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - SB0117D_E14_082716_2253 Metagenome Rhizosphere
103 3300042876 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9GH_GED Metagenome Rhizosphere
104 3300044656 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA1R Metagenome Rhizosphere
105 3300044658 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC1R Metagenome Rhizosphere
106 3300044684 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC4R Metagenome Rhizosphere
107 3300044693 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC2R Metagenome Rhizosphere
108 3300044706 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA3R Metagenome Rhizosphere
109 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
110 3300044719 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC1R Metagenome Rhizosphere
111 3300044735 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA1R Metagenome Rhizosphere
112 3300044765 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA2R Metagenome Rhizosphere
113 3300045049 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC3R Metagenome Rhizosphere
114 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
115 3300045836 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC4R Metagenome Rhizosphere
116 3300046452 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-351-Co3_11_46 rhizosphere Metagenome Rhizosphere
117 3300046453 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co3_8_57 rhizosphere Metagenome Rhizosphere
118 3300046454 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-198-CL2_38_5 rhizosphere Metagenome Rhizosphere
119 3300046459 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL3_88_32 rhizosphere Metagenome Rhizosphere
120 3300046460 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co3_31_37 rhizosphere Metagenome Rhizosphere
121 3300046471 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co3_9_34 rhizosphere Metagenome Rhizosphere
122 3300046477 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL1_23_5 rhizosphere Metagenome Rhizosphere
123 3300046492 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co3_21_57 rhizosphere Metagenome Rhizosphere
124 3300046499 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-234-CL1_24_28 rhizosphere Metagenome Rhizosphere
125 3300046512 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co2_50_17 rhizosphere Metagenome Rhizosphere
126 3300046518 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co1_22_4 rhizosphere Metagenome Rhizosphere
127 3300046519 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co2_51_16 rhizosphere Metagenome Rhizosphere
128 3300046522 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 rhizosphere Metagenome Rhizosphere
129 3300046524 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co1_12_9 rhizosphere Metagenome Rhizosphere
130 3300046536 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL2_62_7 rhizosphere Metagenome Rhizosphere
131 3300046542 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co2_52_27 rhizosphere Metagenome Rhizosphere
132 3300046557 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL1_25_34 rhizosphere Metagenome Rhizosphere
133 3300046660 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co1_32_7 rhizosphere Metagenome Rhizosphere
134 3300046663 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL3_77_6 rhizosphere Metagenome Rhizosphere
135 3300046665 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co3_16_51 rhizosphere Metagenome Rhizosphere
136 3300046683 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-904-CL3_91_3 rhizosphere Metagenome Rhizosphere
137 3300046691 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co3_14_51 rhizosphere Metagenome Rhizosphere
138 3300046692 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co1_37_5 rhizosphere Metagenome Rhizosphere
139 3300046794 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-133-Co1_27_3 rhizosphere Metagenome Rhizosphere
140 3300046809 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-258-CL2_67_23 rhizosphere Metagenome Rhizosphere
141 3300046810 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co2_51_17 rhizosphere Metagenome Rhizosphere
142 3300047319 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL1_34_16 rhizosphere Metagenome Rhizosphere
143 3300047320 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co2_68_28 rhizosphere Metagenome Rhizosphere
144 3300047321 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL3_98_5 rhizosphere Metagenome Rhizosphere
145 3300047443 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co3_24_32 rhizosphere Metagenome Rhizosphere
146 3300047673 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-198-CL3_81_33 rhizosphere Metagenome Rhizosphere
147 3300048089 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL3_84_27 rhizosphere Metagenome Rhizosphere
148 3300048091 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co2_54_7 rhizosphere Metagenome Rhizosphere
149 3300048905 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1c N15 Metagenome Rhizoplane
150 3300048913 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4c N15 Metagenome Rhizoplane
151 3300048915 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5c N15 Metagenome Rhizoplane
152 3300048921 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1f N15 Metagenome Unclassified
153 3300048925 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8x unlabeled Metagenome Unclassified
154 3300048926 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8y unlabeled Metagenome Unclassified
155 3300048927 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_4e N15 Metagenome Unclassified
156 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
157 3300049588 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_03 Metagenome Rhizosphere
158 3300049759 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - C13_A_4_drought Metagenome Rhizosphere
159 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
160 3300050491 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 re-annotation Metagenome Endosphere
161 3300050493 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 re-annotation Metagenome Endosphere
162 3300050496 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 re-annotation Metagenome Endosphere
163 3300053077 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL1_33_12 rhizosphere Metagenome Rhizosphere
164 3300053087 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co3_14_51 endosphere Metagenome Endosphere
165 3300053093 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co2_62_24 endosphere Metagenome Endosphere
166 3300053134 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co1_7_5 endosphere Metagenome Endosphere
167 3300053136 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL2_62_7 endosphere Metagenome Endosphere
168 3300053139 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co1_23_3 endosphere Metagenome Endosphere
169 3300053161 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co3_16_51 endosphere Metagenome Endosphere
170 3300053162 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-4579-CL1_25_23 endosphere Metagenome Endosphere
171 3300053730 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co2_68_28 endosphere Metagenome Endosphere
172 3300060353 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_01 Metagenome Rhizosphere
173 2513020051 Variovorax sp. CF313 Isolate Rhizosphere
174 2551306416 Herbaspirillum seropedicae Os34 Isolate Unclassified
175 2574179768 Azoarcus communis DSM 12120 Isolate Unclassified
176 2599185214 Variovorax sp. NFACC26 Isolate Rhizoplane
177 2599185226 Variovorax sp. NFACC27 Isolate Rhizoplane
178 2599185227 Variovorax sp. NFACC28 Isolate Rhizoplane
179 2599185229 Variovorax sp. NFACC29 Isolate Endosphere
180 2643221609 Acidovorax sp. Root217 Isolate Unclassified
181 2643221658 Variovorax sp. Root411 Isolate Unclassified
182 2643221660 Methylibium sp. Root1272 Isolate Unclassified
183 2643221672 Variovorax sp. Root434 Isolate Unclassified
184 2643221683 Variovorax sp. Root473 Isolate Unclassified
185 2728369097 Stutzerimonas balearica st101 Isolate Unclassified
186 2738541277 Variovorax sp. GV051 Isolate Unclassified
187 2738541307 Variovorax sp. GV008 Isolate Unclassified
188 2738543012 Acidovorax sp. CF301 Isolate Unclassified
189 2738543013 Variovorax sp. BT01 Isolate Unclassified
190 2738543019 Variovorax sp. GV040 Isolate Unclassified
191 2791355137 Paraburkholderia piptadeniae STM7183 Isolate Unclassified
192 2816332133 Acidovorax radicis 2721A Isolate Unclassified
193 2818991446 Variovorax sp. 1180 Isolate Unclassified
194 2831265667 Variovorax guangxiensis DSM 27352 Isolate Rhizosphere
195 2838054893 Variovorax guangxiensis 34/80 Isolate Nodule
196 2842677519 Variovorax sp. R-72495 Isolate Unclassified
197 2842733646 Variovorax sp. R-72446 Isolate Unclassified
198 2842747753 Variovorax sp. R-72060 Isolate Unclassified
199 2856287931 Paraburkholderia bannensis BE22 Isolate Rhizosphere
200 2857357740 Paraburkholderia tropica BE15 Isolate Rhizosphere
201 2864997549 Paenibacillus sp. R-72005 Isolate Unclassified
202 2885198086 Variovorax sp. 679 Isolate Unclassified
203 2885211737 Variovorax sp. 553 Isolate Unclassified
204 2885270888 Paraburkholderia sp. UYCPa14C Isolate Unclassified
205 2899924645 Variovorax sp. 369 Isolate Unclassified
206 2904449895 Variovorax sp. 1763 Isolate Rhizosphere
207 2904456579 Variovorax sp. 2002 Isolate Unclassified
208 2904541872 Variovorax sp. 1615 Isolate Rhizosphere
209 2904615490 Paraburkholderia franconis CNPSo 3157 Isolate Unclassified
210 2919462493 Variovorax sp. 3319 Isolate Rhizosphere
211 2923510766 Herbaspirillum rubrisubalbicans SLBN-127 Isolate Rhizosphere
212 2928037797 Variovorax sp. 1126 Isolate Unclassified
213 2928044640 Variovorax sp. 1128 Isolate Unclassified
214 2928051484 Variovorax sp. 1133 Isolate Unclassified
215 2928064002 Variovorax sp. 1140 Isolate Rhizosphere
216 2928070936 Variovorax gossypii 1167 Isolate Unclassified
217 2928084124 Variovorax paradoxus 1218 Isolate Unclassified
218 2929160207 Variovorax sp. R-72349 Hybrid assembly Isolate Unclassified
219 2929520902 Variovorax beijingensis 502 Isolate Unclassified
220 2932422444 Comamonas sp. 4034 Isolate Rhizosphere
221 2945909444 Variovorax sp. CRF3-Va-1 W1I1 Isolate Rhizosphere
222 2945984333 Variovorax sp. W2I14 Isolate Rhizosphere
223 642555112 Paraburkholderia phymatum STM815 Isolate Nodule
224 8054795415 Paenibacillus periandrae PM10 Isolate Nodule

Type Distribution

Type Percentage (%)
Metagenomes 79.86
Metatranscriptomes 0.69
Isolates 19.44

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 23.96
Nodule 1.74
Rhizoplane 2.08
Rhizosphere 55.21
Stem 0
Stem Tuber 0
Unclassified 0.35

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0495673_0001909 3300047469 Bacteria 15562
2 JGI25156J39149_1000358 3300002705 Bacteria 29530
3 JGI25152J39213_1001387 3300002773 Bacteria 10498
4 JGI25152J39213_1006747 3300002773 Bacteria 3060
5 JGI25150J39212_1001563 3300002774 Bacteria 6258
6 JGI25151J46595_10002659 3300003187 Bacteria 10486
7 rootH1_10004925 3300003316 Bacteria 12287
8 rootH1_10004925 3300003323 Bacteria 10403
9 JGI25161J50226_1000931 3300003374 Bacteria 10498
10 Ga0006562J51391_1017598 3300003578 Bacteria 3970
11 Ga0006562J51391_1017600 3300003578 Bacteria 2530
12 Ga0055535_1000392 3300003761 Bacteria 41361
13 Ga0055542_1000033 3300003762 Bacteria 233997
14 Ga0055530_10008267 3300003791 Bacteria 4202
15 Ga0055531_10007027 3300003794 Bacteria 6232
16 Ga0055531_10024912 3300003794 Bacteria 2191
17 Ga0065714_10065576 3300005288 Bacteria 9325
18 Ga0065714_10075817 3300005288 Bacteria 2863
19 Ga0065704_10087164 3300005289 Bacteria 3050
20 Ga0070658_10041466 3300005327 Bacteria 3714
21 Ga0070669_100236131 3300005353 Bacteria 1451
22 Ga0068867_100011720 3300005459 Bacteria 6190
23 Ga0070706_100005629 3300005467 Bacteria 11922
24 Ga0070706_100045678 3300005467 Bacteria 4045
25 Ga0070707_100005485 3300005468 Bacteria 11863
26 Ga0070698_100009658 3300005471 Bacteria 10320
27 Ga0070697_100005866 3300005536 Bacteria 9477
28 Ga0068853_100027891 3300005539 Bacteria 4747
29 Ga0070665_100019484 3300005548 Bacteria 6810
30 Ga0070664_100013434 3300005564 Bacteria 6669
31 Ga0068859_100000001 3300005617 Bacteria 545224
32 Ga0068851_10007456 3300005834 Bacteria 5024
33 Ga0081455_10021626 3300005937 Bacteria 6028
34 Ga0070717_10013487 3300006028 Bacteria 6264
35 Ga0075364_10020435 3300006051 Bacteria 4164
36 Ga0075366_10011725 3300006195 Bacteria 4954
37 Ga0075370_10093350 3300006353 Bacteria 1737
38 Ga0075430_100283397 3300006846 Bacteria 1371
39 Ga0097620_100000001 3300006931 Bacteria 545224
40 Ga0079104_1000004 3300006946 Bacteria 444549
41 Ga0105251_10012224 3300009011 Bacteria 4867
42 Ga0105250_10002637 3300009092 Bacteria 8909
43 Ga0105243_10005282 3300009148 Bacteria 10098
44 Ga0105243_10058827 3300009148 Bacteria 3064
45 Ga0105242_10000153 3300009176 Bacteria 51027
46 Ga0105242_10329174 3300009176 Bacteria 1404
47 Ga0105237_10040721 3300009545 Bacteria 4685
48 Ga0105237_10083485 3300009545 Bacteria 3186
49 Ga0105239_10158853 3300010375 Bacteria 2525
50 Ga0105246_10182102 3300011119 Bacteria 1618
51 Ga0157370_10070313 3300013104 Bacteria 3304
52 Ga0157370_10289144 3300013104 Bacteria 1514
53 Ga0163162_10032652 3300013306 Bacteria 5171
54 Ga0157372_10133918 3300013307 Bacteria 2853
55 Ga0182008_10002034 3300014497 Bacteria 12969
56 Ga0182008_10009489 3300014497 Bacteria 5247
57 Ga0182006_1000895 3300015261 Bacteria 19978
58 Ga0182007_10000647 3300015262 Bacteria 20069
59 Ga0163161_10026752 3300017792 Bacteria 4088
60 Ga0163161_10114255 3300017792 Bacteria 2022
61 Ga0209566_100072 3300025225 Bacteria 167764
62 Ga0209672_101022 3300025228 Bacteria 12112
63 Ga0209147_101280 3300025229 Bacteria 9795
64 Ga0209258_100089 3300025242 Bacteria 234040
65 Ga0207425_1000603 3300025245 Bacteria 20837
66 Ga0209148_1000097 3300025254 Bacteria 234049
67 Ga0209759_1000626 3300025256 Bacteria 33660
68 Ga0209129_1000071 3300025258 Bacteria 210729
69 Ga0209129_1002606 3300025258 Bacteria 8605
70 Ga0209565_1001593 3300025263 Bacteria 9641
71 Ga0209455_1001139 3300025272 Bacteria 12895
72 Ga0209673_1001338 3300025273 Bacteria 24643
73 Ga0209130_1000456 3300025284 Bacteria 43000
74 Ga0209130_1000812 3300025284 Bacteria 26378
75 Ga0209130_1002925 3300025284 Bacteria 7819
76 Ga0209675_1000290 3300025291 Bacteria 47338
77 Ga0209675_1001110 3300025291 Bacteria 16417
78 Ga0209675_1002749 3300025291 Bacteria 8790
79 Ga0209676_1000005 3300025292 Bacteria 1076001
80 Ga0209676_1000260 3300025292 Bacteria 111683
81 Ga0209676_1001229 3300025292 Bacteria 27108
82 Ga0209676_1004905 3300025292 Bacteria 7212
83 Ga0209025_1000854 3300025294 Bacteria 48260
84 Ga0209025_1001065 3300025294 Bacteria 39873
85 Ga0209025_1001409 3300025294 Bacteria 31873
86 Ga0209025_1001617 3300025294 Bacteria 28145
87 Ga0209564_1000239 3300025295 Bacteria 119761
88 Ga0209564_1000890 3300025295 Bacteria 39405
89 Ga0209758_1000027 3300025297 Bacteria 549650
90 Ga0209050_1000007 3300025298 Bacteria 1187891
91 Ga0209050_1000954 3300025298 Bacteria 37580
92 Ga0209256_1000081 3300025299 Bacteria 222908
93 Ga0207426_1000027 3300025302 Bacteria 513176
94 Ga0207426_1000614 3300025302 Bacteria 45951
95 Ga0209051_1000009 3300025303 Bacteria 706778
96 Ga0209051_1000319 3300025303 Bacteria 72894
97 Ga0209051_1000619 3300025303 Bacteria 40839
98 Ga0209051_1000661 3300025303 Bacteria 38725
99 Ga0209051_1009903 3300025303 Bacteria 4866
100 Ga0209051_1030889 3300025303 Bacteria 2071
101 Ga0209257_1000873 3300025304 Bacteria 42738
102 Ga0209257_1002439 3300025304 Bacteria 18494
103 Ga0207656_10015853 3300025321 Bacteria 2923
104 Ga0207705_10061295 3300025909 Bacteria 2717
105 Ga0207684_10027809 3300025910 Bacteria 4817
106 Ga0207684_10066746 3300025910 Bacteria 3056
107 Ga0207695_10287470 3300025913 Bacteria 1537
108 Ga0207646_10012158 3300025922 Bacteria 8282
109 Ga0207681_10010845 3300025923 Bacteria 5598
110 Ga0207706_10015339 3300025933 Bacteria 6923
111 Ga0207686_10000971 3300025934 Bacteria 17064
112 Ga0207709_10009455 3300025935 Bacteria 5363
113 Ga0207667_10115180 3300025949 Bacteria 2771
114 Ga0207639_10049789 3300026041 Bacteria 3179
115 Ga0207648_10255346 3300026089 Unclassified 1563
116 Ga0207674_10364807 3300026116 Bacteria 1396
117 Ga0207683_10281312 3300026121 Bacteria 1520
118 Ga0209281_1000005 3300027111 Bacteria 1242284
119 Ga0209995_1002464 3300027471 Bacteria 2924
120 Ga0209974_10036752 3300027876 Bacteria 1626
121 Ga0207428_10064981 3300027907 Bacteria 2880
122 Ga0268266_10188251 3300028379 Bacteria 1883
123 Ga0265338_10015324 3300028800 Bacteria 8433
124 Ga0316177_1113481 3300030731 Bacteria 2625
125 Ga0316176_1225533 3300030732 Bacteria 2068
126 Ga0316183_1013890 3300030742 Bacteria 5830
127 Ga0316182_1130344 3300030745 Bacteria 3115
128 Ga0265316_10060933 3300031344 Bacteria 2932
129 Ga0307405_10030388 3300031731 Bacteria 3167
130 Ga0307405_10051105 3300031731 Bacteria 2563
131 Ga0307405_10052527 3300031731 Bacteria 2534
132 Ga0307413_10126361 3300031824 Bacteria 1742
133 Ga0373931_0091431 3300035691 Bacteria 1696
134 Ga0395905_0014998 3300037471 Bacteria 7387
135 Ga0436361_0805591 3300039447 Bacteria 5774
136 Ga0436361_0814448 3300039447 Bacteria 7286
137 Ga0450906_003514 3300042145 Bacteria 3367
138 Ga0450918_004365 3300042531 Bacteria 2580
139 Ga0451577_0137248 3300042876 Bacteria 2196
140 Ga0451577_0226232 3300042876 Bacteria 1691
141 Ga0466969_0007406 3300044656 Bacteria 5830
142 Ga0466972_0012593 3300044658 Bacteria 4249
143 Ga0466966_0000656 3300044684 Bacteria 22023
144 Ga0466966_0003181 3300044684 Bacteria 10803
145 Ga0466966_0007716 3300044684 Bacteria 7125
146 Ga0466966_0007882 3300044684 Bacteria 7048
147 Ga0466961_0000121 3300044693 Bacteria 52226
148 Ga0466961_0007383 3300044693 Bacteria 6995
149 Ga0466961_0017004 3300044693 Bacteria 4671
150 Ga0466964_0006997 3300044706 Bacteria 4217
151 Ga0466964_0036709 3300044706 Bacteria 1966
152 Ga0453684_0000005 3300044712 Bacteria 1431632
153 Ga0453684_0002888 3300044712 Bacteria 40310
154 Ga0453684_0004091 3300044712 Bacteria 31642
155 Ga0466971_0028074 3300044719 Bacteria 2519
156 Ga0466968_0015201 3300044735 Bacteria 3047
157 Ga0466970_0102976 3300044765 Bacteria 1555
158 Ga0466959_0017697 3300045049 Bacteria 5227
159 Ga0466959_0018050 3300045049 Bacteria 5177
160 Ga0466959_0037377 3300045049 Bacteria 3587
161 Ga0451576_0000418 3300045051 Bacteria 98732
162 Ga0451576_0026857 3300045051 Bacteria 6186
163 Ga0466958_0000976 3300045836 Bacteria 12923
164 Ga0495617_040772 3300046452 Bacteria 1552
165 Ga0495627_000009 3300046453 Bacteria 463964
166 Ga0495592_0026094 3300046454 Bacteria 4433
167 Ga0495629_0156023 3300046459 Bacteria 1586
168 Ga0495638_0025403 3300046460 Bacteria 3851
169 Ga0495650_0038529 3300046471 Bacteria 2070
170 Ga0495664_0025299 3300046477 Bacteria 3455
171 Ga0495585_0066288 3300046492 Bacteria 1977
172 Ga0495594_0056789 3300046499 Bacteria 2161
173 Ga0495610_0000063 3300046512 Bacteria 127282
174 Ga0495610_0053245 3300046512 Bacteria 1961
175 Ga0495631_0002245 3300046518 Bacteria 11094
176 Ga0495632_0000198 3300046519 Bacteria 61128
177 Ga0495643_0000007 3300046522 Bacteria 383435
178 Ga0495643_0001482 3300046522 Bacteria 21387
179 Ga0495648_0000094 3300046524 Bacteria 110608
180 Ga0495648_0008581 3300046524 Bacteria 8023
181 Ga0495587_0084369 3300046536 Bacteria 1840
182 Ga0495597_0000116 3300046542 Bacteria 72210
183 Ga0495622_0009724 3300046557 Bacteria 4445
184 Ga0495625_0000896 3300046660 Bacteria 40225
185 Ga0495635_0021441 3300046663 Bacteria 4503
186 Ga0495661_0033134 3300046665 Bacteria 3260
187 Ga0495658_0017545 3300046683 Bacteria 3700
188 Ga0495670_0001993 3300046691 Bacteria 10026
189 Ga0495670_0004765 3300046691 Bacteria 6664
190 Ga0495671_0005060 3300046692 Bacteria 7764
191 Ga0495589_0005701 3300046794 Bacteria 6563
192 Ga0495600_0171234 3300046809 Bacteria 1401
193 Ga0495660_0000083 3300046810 Bacteria 100535
194 Ga0495674_0026678 3300047319 Bacteria 5284
195 Ga0495672_0000299 3300047320 Bacteria 67952
196 Ga0495672_0003604 3300047320 Bacteria 13151
197 Ga0495672_0014332 3300047320 Bacteria 5434
198 Ga0495676_0000690 3300047321 Bacteria 28135
199 Ga0495687_000231 3300047443 Bacteria 78068
200 Ga0495593_0000223 3300047673 Bacteria 30267
201 Ga0495614_0009082 3300048089 Bacteria 4404
202 Ga0495626_0000221 3300048091 Bacteria 67305
203 Ga0495626_0058285 3300048091 Bacteria 1765
204 Ga0496102_0001877 3300048905 Bacteria 18103
205 Ga0496110_0035336 3300048913 Bacteria 4335
206 Ga0496112_0073044 3300048915 Bacteria 3391
207 Ga0496118_0030932 3300048921 Bacteria 4453
208 Ga0496118_0033090 3300048921 Bacteria 4249
209 Ga0496122_0006795 3300048925 Bacteria 12994
210 Ga0496122_0040919 3300048925 Bacteria 3674
211 Ga0496123_0000176 3300048926 Bacteria 130010
212 Ga0496123_0059936 3300048926 Bacteria 2457
213 Ga0496124_0102943 3300048927 Bacteria 2310
214 Ga0496126_0001580 3300048929 Bacteria 34787
215 Ga0501072_0001042 3300049588 Bacteria 20535
216 Ga0501262_000268 3300049759 Bacteria 6353
217 Ga0501035_0081190 3300049822 Bacteria 2862
218 nmdc:mga00v17_75436_c1 3300050491 Bacteria 2097
219 nmdc:mga0k408_25358_c1 3300050493 Bacteria 3358
220 nmdc:mga0k408_39088_c2 3300050493 Bacteria 2117
221 nmdc:mga07m45_26961_c1 3300050496 Bacteria 3161
222 nmdc:mga07m45_28071_c1 3300050496 Bacteria 3106
223 Ga0495601_0195632 3300053077 Bacteria 1321
224 Ga0500643_006744 3300053087 Bacteria 4744
225 Ga0500651_0000029 3300053093 Bacteria 113528
226 Ga0500658_0018298 3300053134 Bacteria 2625
227 Ga0500658_0030059 3300053134 Bacteria 2117
228 Ga0500559_0003152 3300053136 Bacteria 8189
229 Ga0500568_0002969 3300053139 Bacteria 9704
230 Ga0500634_0012311 3300053161 Bacteria 4451
231 Ga0500638_003817 3300053162 Bacteria 5673
232 Ga0500645_019407 3300053730 Bacteria 2114
233 Ga0501082_0205371 3300060353 Bacteria 1714
234 2513227981 2513020051 Bacteria 6053213
235 2513231969 2513020051 Bacteria 6053213
236 2553004260 2551306416 Bacteria 6152985
237 2574431931 2574179768 Bacteria 4907129
238 2599624052 2599185214 Bacteria 8209958
239 2599672063 2599185226 Bacteria 8233575
240 2599681855 2599185227 Bacteria 8246414
241 2599693868 2599185229 Bacteria 8216126
242 2644057994 2643221609 Bacteria 6756331
243 2644328808 2643221658 Bacteria 6064537
244 2644339996 2643221660 Bacteria 4208257
245 2644397973 2643221672 Bacteria 6322190
246 2644401305 2643221672 Bacteria 6322190
247 2644469150 2643221683 Bacteria 5749203
248 2729147359 2728369097 Bacteria 4333476
249 2738719934 2738541277 Bacteria 7458140
250 2738886679 2738541307 Bacteria 8606193
251 2739245593 2738543012 Bacteria 7115078
252 2739252166 2738543013 Bacteria 5618633
253 2739279133 2738543019 Bacteria 7459457
254 2792836390 2791355137 Bacteria 9654227
255 2792837844 2791355137 Bacteria 9654227
256 2816470100 2816332133 Bacteria 7249298
257 2819596501 2818991446 Bacteria 7757362
258 2831269539 2831265667 Bacteria 7184833
259 2838060030 2838054893 Bacteria 7451788
260 2842681916 2842677519 Bacteria 5615038
261 2842734723 2842733646 Bacteria 5716726
262 2842748515 2842747753 Bacteria 5578255
263 2856288753 2856287931 Bacteria 7223934
264 2857364468 2857357740 Bacteria 9937880
265 2865001728 2864997549 Bacteria 5139696
266 2885199211 2885198086 Bacteria 7212419
267 2885212862 2885211737 Bacteria 7212420
268 2885271704 2885270888 Bacteria 9831543
269 2885275543 2885270888 Bacteria 9831543
270 2899931218 2899924645 Bacteria 7487985
271 2904450082 2904449895 Bacteria 6927402
272 2904457102 2904456579 Bacteria 6819253
273 2904543921 2904541872 Bacteria 8915136
274 2904617160 2904615490 Bacteria 10047340
275 2919464989 2919462493 Bacteria 5817112
276 2923512099 2923510766 Bacteria 5926163
277 2928038009 2928037797 Bacteria 7273642
278 2928046385 2928044640 Bacteria 7271509
279 2928054081 2928051484 Bacteria 7773759
280 2928065834 2928064002 Bacteria 7419480
281 2928076734 2928070936 Bacteria 8062541
282 2928090516 2928084124 Bacteria 7159212
283 2929162520 2929160207 Bacteria 9075316
284 2929525365 2929520902 Bacteria 6765052
285 2932423850 2932422444 Bacteria 4678430
286 2945913109 2945909444 Bacteria 7065066
287 2945984614 2945984333 Bacteria 7358892
288 642592751 642555112 Bacteria 8676562
289 8054801142 8054795415 Bacteria 9785225
290 Ga0495673_0001909
291 JGI25156J39149_1000358
292 JGI25152J39213_1001387
293 JGI25152J39213_1006747
294 JGI25150J39212_1001563
295 JGI25151J46595_10002659
296 rootH1_10004925
297 JGI25161J50226_1000931
298 Ga0006562J51391_1017598
299 Ga0006562J51391_1017600
300 Ga0055535_1000392
301 Ga0055542_1000033
302 Ga0055530_10008267
303 Ga0055531_10007027
304 Ga0055531_10024912
305 Ga0065714_10065576
306 Ga0065714_10075817
307 Ga0065704_10087164
308 Ga0070658_10041466
309 Ga0070669_100236131
310 Ga0068867_100011720
311 Ga0070706_100005629
312 Ga0070706_100045678
313 Ga0070707_100005485
314 Ga0070698_100009658
315 Ga0070697_100005866
316 Ga0068853_100027891
317 Ga0070665_100019484
318 Ga0070664_100013434
319 Ga0068859_100000001
320 Ga0068851_10007456
321 Ga0081455_10021626
322 Ga0070717_10013487
323 Ga0075364_10020435
324 Ga0075366_10011725
325 Ga0075370_10093350
326 Ga0075430_100283397
327 Ga0097620_100000001
328 Ga0079104_1000004
329 Ga0105251_10012224
330 Ga0105250_10002637
331 Ga0105243_10005282
332 Ga0105243_10058827
333 Ga0105242_10000153
334 Ga0105242_10329174
335 Ga0105237_10040721
336 Ga0105237_10083485
337 Ga0105239_10158853
338 Ga0105246_10182102
339 Ga0157370_10070313
340 Ga0157370_10289144
341 Ga0163162_10032652
342 Ga0157372_10133918
343 Ga0182008_10002034
344 Ga0182008_10009489
345 Ga0182006_1000895
346 Ga0182007_10000647
347 Ga0163161_10026752
348 Ga0163161_10114255
349 Ga0209566_100072
350 Ga0209672_101022
351 Ga0209147_101280
352 Ga0209258_100089
353 Ga0207425_1000603
354 Ga0209148_1000097
355 Ga0209759_1000626
356 Ga0209129_1000071
357 Ga0209129_1002606
358 Ga0209565_1001593
359 Ga0209455_1001139
360 Ga0209673_1001338
361 Ga0209130_1000456
362 Ga0209130_1000812
363 Ga0209130_1002925
364 Ga0209675_1000290
365 Ga0209675_1001110
366 Ga0209675_1002749
367 Ga0209676_1000005
368 Ga0209676_1000260
369 Ga0209676_1001229
370 Ga0209676_1004905
371 Ga0209025_1000854
372 Ga0209025_1001065
373 Ga0209025_1001409
374 Ga0209025_1001617
375 Ga0209564_1000239
376 Ga0209564_1000890
377 Ga0209758_1000027
378 Ga0209050_1000007
379 Ga0209050_1000954
380 Ga0209256_1000081
381 Ga0207426_1000027
382 Ga0207426_1000614
383 Ga0209051_1000009
384 Ga0209051_1000319
385 Ga0209051_1000619
386 Ga0209051_1000661
387 Ga0209051_1009903
388 Ga0209051_1030889
389 Ga0209257_1000873
390 Ga0209257_1002439
391 Ga0207656_10015853
392 Ga0207705_10061295
393 Ga0207684_10027809
394 Ga0207684_10066746
395 Ga0207695_10287470
396 Ga0207646_10012158
397 Ga0207681_10010845
398 Ga0207706_10015339
399 Ga0207686_10000971
400 Ga0207709_10009455
401 Ga0207667_10115180
402 Ga0207639_10049789
403 Ga0207648_10255346
404 Ga0207674_10364807
405 Ga0207683_10281312
406 Ga0209281_1000005
407 Ga0209995_1002464
408 Ga0209974_10036752
409 Ga0207428_10064981
410 Ga0268266_10188251
411 Ga0265338_10015324
412 Ga0316177_1113481
413 Ga0316176_1225533
414 Ga0316183_1013890
415 Ga0316182_1130344
416 Ga0265316_10060933
417 Ga0307405_10030388
418 Ga0307405_10051105
419 Ga0307405_10052527
420 Ga0307413_10126361
421 Ga0373931_0091431
422 Ga0395905_0014998
423 Ga0436361_0805591
424 Ga0436361_0814448
425 Ga0450906_003514
426 Ga0450918_004365
427 Ga0451577_0137248
428 Ga0451577_0226232
429 Ga0466969_0007406
430 Ga0466972_0012593
431 Ga0466966_0000656
432 Ga0466966_0003181
433 Ga0466966_0007716
434 Ga0466966_0007882
435 Ga0466961_0000121
436 Ga0466961_0007383
437 Ga0466961_0017004
438 Ga0466964_0006997
439 Ga0466964_0036709
440 Ga0453684_0000005
441 Ga0453684_0002888
442 Ga0453684_0004091
443 Ga0466971_0028074
444 Ga0466968_0015201
445 Ga0466970_0102976
446 Ga0466959_0017697
447 Ga0466959_0018050
448 Ga0466959_0037377
449 Ga0451576_0000418
450 Ga0451576_0026857
451 Ga0466958_0000976
452 Ga0495617_040772
453 Ga0495627_000009
454 Ga0495592_0026094
455 Ga0495629_0156023
456 Ga0495638_0025403
457 Ga0495650_0038529
458 Ga0495664_0025299
459 Ga0495585_0066288
460 Ga0495594_0056789
461 Ga0495610_0000063
462 Ga0495610_0053245
463 Ga0495631_0002245
464 Ga0495632_0000198
465 Ga0495643_0000007
466 Ga0495643_0001482
467 Ga0495648_0000094
468 Ga0495648_0008581
469 Ga0495587_0084369
470 Ga0495597_0000116
471 Ga0495622_0009724
472 Ga0495625_0000896
473 Ga0495635_0021441
474 Ga0495661_0033134
475 Ga0495658_0017545
476 Ga0495670_0001993
477 Ga0495670_0004765
478 Ga0495671_0005060
479 Ga0495589_0005701
480 Ga0495600_0171234
481 Ga0495660_0000083
482 Ga0495674_0026678
483 Ga0495672_0000299
484 Ga0495672_0003604
485 Ga0495672_0014332
486 Ga0495676_0000690
487 Ga0495687_000231
488 Ga0495593_0000223
489 Ga0495614_0009082
490 Ga0495626_0000221
491 Ga0495626_0058285
492 Ga0496102_0001877
493 Ga0496110_0035336
494 Ga0496112_0073044
495 Ga0496118_0030932
496 Ga0496118_0033090
497 Ga0496122_0006795
498 Ga0496122_0040919
499 Ga0496123_0000176
500 Ga0496123_0059936
501 Ga0496124_0102943
502 Ga0496126_0001580
503 Ga0501072_0001042
504 Ga0501262_000268
505 Ga0501035_0081190
506 nmdc:mga00v17_75436_c1
507 nmdc:mga0k408_25358_c1
508 nmdc:mga0k408_39088_c2
509 nmdc:mga07m45_26961_c1
510 nmdc:mga07m45_28071_c1
511 Ga0495601_0195632
512 Ga0500643_006744
513 Ga0500651_0000029
514 Ga0500658_0018298
515 Ga0500658_0030059
516 Ga0500559_0003152
517 Ga0500568_0002969
518 Ga0500634_0012311
519 Ga0500638_003817
520 Ga0500645_019407
521 Ga0501082_0205371
522 2513227981
523 2513231969
524 2553004260
525 2574431931
526 2599624052
527 2599672063
528 2599681855
529 2599693868
530 2644057994
531 2644328808
532 2644339996
533 2644397973
534 2644401305
535 2644469150
536 2729147359
537 2738719934
538 2738886679
539 2739245593
540 2739252166
541 2739279133
542 2792836390
543 2792837844
544 2816470100
545 2819596501
546 2831269539
547 2838060030
548 2842681916
549 2842734723
550 2842748515
551 2856288753
552 2857364468
553 2865001728
554 2885199211
555 2885212862
556 2885271704
557 2885275543
558 2899931218
559 2904450082
560 2904457102
561 2904543921
562 2904617160
563 2919464989
564 2923512099
565 2928038009
566 2928046385
567 2928054081
568 2928065834
569 2928076734
570 2928090516
571 2929162520
572 2929525365
573 2932423850
574 2945913109
575 2945984614
576 642592751
577 8054801142

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF02803

Thiolase_C

Thiolase, C-terminal domain

302

424

0.99

PF00108

Thiolase_N

Thiolase, N-terminal domain

37

295

0.98

PF00109

ketoacyl-synt

Beta-ketoacyl synthase, N-terminal domain

109

167

0.83

Structural Annotation

Top 5 Hits

ID Description Score Start End
4w61-assembly4.cif.gz_P crystal structure of beta-ketoacyl thiolase b (bktb) from ralstonia eutropha 0.9927 3 393
4w61-assembly3.cif.gz_L crystal structure of beta-ketoacyl thiolase b (bktb) from ralstonia eutropha 0.9905 3 393
4nzs-assembly1.cif.gz_A crystal structure of beta-ketothiolase bktb b from ralstonia eutropha h16 0.9904 3 394
4w61-assembly2.cif.gz_H crystal structure of beta-ketoacyl thiolase b (bktb) from ralstonia eutropha 0.9897 3 394
4w61-assembly3.cif.gz_K crystal structure of beta-ketoacyl thiolase b (bktb) from ralstonia eutropha 0.9896 3 394
ID Description Score Start End Superfamily
af_A0A096MJY8_281_393_3.40.47.10 Alpha Beta;3-Layer(aba) Sandwich;Peroxisomal Thiolase; Chain A, domain 1;Thiolase/Chalcone synthase 0.9973 278 388 3.40.47.10
af_P76461_265_393_3.40.47.10 Alpha Beta;3-Layer(aba) Sandwich;Peroxisomal Thiolase; Chain A, domain 1;Thiolase/Chalcone synthase 0.9946 267 394 3.40.47.10
af_O53871_287_399_3.40.47.10 Alpha Beta;3-Layer(aba) Sandwich;Peroxisomal Thiolase; Chain A, domain 1;Thiolase/Chalcone synthase 0.992 278 388 3.40.47.10
af_A0A0G2KML7_1_235_3.40.47.10 Alpha Beta;3-Layer(aba) Sandwich;Peroxisomal Thiolase; Chain A, domain 1;Thiolase/Chalcone synthase 0.9908 158 393 3.40.47.10
af_A0A0G2KML7_1_235_3.40.47.10 Alpha Beta;3-Layer(aba) Sandwich;Peroxisomal Thiolase; Chain A, domain 1;Thiolase/Chalcone synthase 0.9866 158 393 3.40.47.10
ID Description Score Start End GO Terms
AF-A0A7V4PRG6-F1-model_v4 acetyl-CoA C-acyltransferase (EC 2.3.1.16) 1 273 394 GO:0003988
GO:0006635
GO:0010124
AF-A0A7X6WFA2-F1-model_v4 Acetyl-CoA C-acyltransferase (EC 2.3.1.9) 0.9988 284 393 GO:0003985
GO:0006635
GO:0010124
AF-A0A1F7L7J7-F1-model_v4 Thiolase C-terminal domain-containing protein 0.9977 283 394 GO:0003988
GO:0006635
GO:0010124
AF-A0A2X3DZA3-F1-model_v4 Beta-ketothiolase (EC 2.3.1.9) 0.9962 274 384 GO:0003985
GO:0006631
GO:0070403
AF-A0A519H2S4-F1-model_v4 acetyl-CoA C-acyltransferase (EC 2.3.1.16) 0.996 262 394 GO:0003985
GO:0006635
GO:0010124

Map