F388908

General Info

Members Datasets Scaffolds Average Seq Length
288 237 576 558

Family's Representative Sequence

Representative Sequence iso_pu_bacteria|2857542790|2857544535
Length 588
Sequence PGTLWTNMYQYDEVDQQLVEERVTQFSDQMQRFLAGDLSEDDFRPLRLQNGLYIQRHAPMLRVAIPYGLLSAEQLRMLGHIARTWDRGYGHFSTRQNIQFNWPSLEDTPKILAALATVQMHAIQTSGNCIRNTTTDHFAGVAPDEIVDPLVWCEIIRQWSTFHPEFAFLPRKFKIAVSGSPSDRAAVGVHDIGLQADTVDGVIGFRVAVGGGMGRTPIVGKVIRNFLPWYDLLTYLQAILRVYNLHGRRDNKYKARIKILVKDLTPEVFGEQVEREWQHIKDGPNKLTQADLDAIATRFTTPAYDADAAQAPDPTPALAAEQPTFARWLRKNVHPHREPGYACVTLSLKETGVPPGDLTADQMDAVADLADAFSAGEMRVSHEQNLIFAHVRQSDLPALWEKLTPLGLAHANIGLINNIIACPGGDFCALANAVSIPVAESIQRRFDNLDYQFEIGELDLNISGCINSCGHHHVGHIGILGVDKGGEEWYQVTIGGRQSAGPGEHLDAKGVIRPGGAAIGKIIGPSFARDEVPDVVETLIQTYLKLRDSDAERFVDVVGRVGLDPFKTDVYGDARKNLIAQQQGAVHA

Samples

Sample ID Description Type Environment
1 3300001915 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C7 Metagenome Rhizosphere
2 3300001979 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6 Metagenome Rhizosphere
3 3300002705 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mMS Metagenome Unclassified
4 3300002738 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mTSA Metagenome Unclassified
5 3300002773 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMS Metagenome Endosphere
6 3300003187 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mLB Metagenome Endosphere
7 3300003479 Arabidopsis rhizosphere microbial communities from the University of North Carolina, USA - metaT NBMF1_06_lowP_mix1_d1 (Metagenome Metatranscriptome, Counting Only) Metatranscriptome Rhizosphere
8 3300003752 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mCL_r2 Metagenome Endosphere
9 3300003756 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mMS_r2 Metagenome Endosphere
10 3300003758 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mLB_r2 Metagenome Endosphere
11 3300003759 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mMF_r2 Metagenome Endosphere
12 3300003760 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mMS_r2 Metagenome Endosphere
13 3300003761 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mTSA_r2 Metagenome Endosphere
14 3300003762 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mMF_r2 Metagenome Endosphere
15 3300003763 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mCL_r2 Metagenome Endosphere
16 3300003791 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 Metagenome Endosphere
17 3300003841 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mTSA_r2 Metagenome Endosphere
18 3300005289 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 v2 (version 2) Metagenome Rhizosphere
19 3300005295 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL3 v2 (version 2) Metagenome Rhizosphere
20 3300005331 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG Metagenome Rhizosphere
21 3300005344 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG Metagenome Rhizosphere
22 3300005347 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG Metagenome Rhizosphere
23 3300005354 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG Metagenome Rhizosphere
24 3300005355 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG Metagenome Rhizosphere
25 3300005366 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG Metagenome Rhizosphere
26 3300005367 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG Metagenome Rhizosphere
27 3300005455 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG Metagenome Rhizosphere
28 3300005467 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG Metagenome Rhizosphere
29 3300005468 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG Metagenome Rhizosphere
30 3300005471 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG Metagenome Rhizosphere
31 3300005518 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG Metagenome Rhizosphere
32 3300005543 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG Metagenome Rhizosphere
33 3300005545 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-2 metaG Metagenome Rhizosphere
34 3300005547 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-3 metaG Metagenome Rhizosphere
35 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
36 3300005549 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-2 metaG Metagenome Rhizosphere
37 3300005564 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG Metagenome Rhizosphere
38 3300005578 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 Metagenome Rhizosphere
39 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
40 3300005617 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 Metagenome Rhizosphere
41 3300005618 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 Metagenome Rhizosphere
42 3300005718 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2 Metagenome Rhizosphere
43 3300005719 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 Metagenome Rhizosphere
44 3300005842 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 Metagenome Rhizosphere
45 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
46 3300005844 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 Metagenome Rhizosphere
47 3300006051 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 Metagenome Endosphere
48 3300006195 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 Metagenome Endosphere
49 3300006237 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2) (version 2) Metagenome Rhizosphere
50 3300006358 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 Metagenome Rhizosphere
51 3300006846 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 Metagenome Rhizosphere
52 3300006852 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 Metagenome Rhizosphere
53 3300006871 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 Metagenome Rhizosphere
54 3300006880 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 Metagenome Rhizosphere
55 3300006914 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5 Metagenome Rhizosphere
56 3300006931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 (version 2) (version 2) Metagenome Rhizosphere
57 3300007076 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 Metagenome Rhizosphere
58 3300007788 Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_2 Metagenome Rhizosphere
59 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
60 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
61 3300009176 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG Metagenome Rhizosphere
62 3300009177 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG Metagenome Rhizosphere
63 3300013100 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6-5 metaG Metagenome Rhizosphere
64 3300013102 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG Metagenome Rhizosphere
65 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
66 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
67 3300013297 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG Metagenome Rhizosphere
68 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
69 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
70 3300014325 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG Metagenome Rhizosphere
71 3300014326 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG Metagenome Rhizosphere
72 3300014969 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG Metagenome Rhizosphere
73 3300015261 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-104_1 MetaG Metagenome Rhizosphere
74 3300020076 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-2 (Metagenome Metatranscriptome) (v3) (version 3) Metatranscriptome Rhizosphere
75 3300020077 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5pm-1 (Metagenome Metatranscriptome) (v2) (version 2) Metatranscriptome Rhizosphere
76 3300020610 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5pm-1 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
77 3300025224 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mLB_r2 (SPAdes) (version 2) Metagenome Endosphere
78 3300025225 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mTSA_r2 (SPAdes) (version 2) Metagenome Endosphere
79 3300025226 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mMS_r2 (SPAdes) (version 2) Metagenome Endosphere
80 3300025228 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mMS_r2 (SPAdes) (version 2) Metagenome Endosphere
81 3300025229 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mLB_r2 (SPAdes) (version 2) Metagenome Endosphere
82 3300025230 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mMF_r2 (SPAdes) (version 2) Metagenome Endosphere
83 3300025242 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mTSA_r2 (SPAdes) (version 2) Metagenome Endosphere
84 3300025245 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mTSA (SPAdes) (version 3) Metagenome Endosphere
85 3300025246 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mTSA (SPAdes) (version 2) Metagenome Unclassified
86 3300025253 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
87 3300025254 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mMF_r2 (SPAdes) (version 2) Metagenome Endosphere
88 3300025256 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mMS (SPAdes) (version 2) Metagenome Unclassified
89 3300025258 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMS (SPAdes) (version 3) Metagenome Endosphere
90 3300025272 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
91 3300025284 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mLB (SPAdes) (version 2) Metagenome Endosphere
92 3300025294 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mLB (SPAdes) (version 2) Metagenome Endosphere
93 3300025295 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMF_r2 (SPAdes) (version 3) Metagenome Endosphere
94 3300025297 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF (SPAdes) (version 2) Metagenome Endosphere
95 3300025298 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 (SPAdes) (version 2) Metagenome Endosphere
96 3300025299 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mCL_r2 (SPAdes) (version 3) Metagenome Endosphere
97 3300025901 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4 (SPAdes) (version 2) Metagenome Rhizosphere
98 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
99 3300025920 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
100 3300025922 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
101 3300025925 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
102 3300025926 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
103 3300025932 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
104 3300025933 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
105 3300025934 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
106 3300025939 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
107 3300025940 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
108 3300025942 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes) (version 2) Metagenome Rhizosphere
109 3300025945 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
110 3300025972 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
111 3300025981 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 (SPAdes) (version 2) Metagenome Rhizosphere
112 3300026035 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes) (version 2) Metagenome Rhizosphere
113 3300026067 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
114 3300026088 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes) (version 2) Metagenome Rhizosphere
115 3300026089 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes) (version 2) Metagenome Rhizosphere
116 3300026095 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes) (version 2) Metagenome Rhizosphere
117 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
118 3300026118 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes) (version 2) Metagenome Rhizosphere
119 3300026121 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
120 3300026142 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes) (version 2) Metagenome Rhizosphere
121 3300027543 Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M1 AM (SPAdes) (version 2) Metagenome Rhizosphere
122 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
123 3300028380 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes) (version 2) Metagenome Rhizosphere
124 3300028381 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) Metagenome Rhizosphere
125 3300031235 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-19 metaG Metagenome Rhizosphere
126 3300031238 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-26 metaG Metagenome Rhizosphere
127 3300031239 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-24 metaG Metagenome Rhizosphere
128 3300031250 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-23 metaG Metagenome Rhizosphere
129 3300031344 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-5-22 metaG Metagenome Rhizosphere
130 3300031507 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 10_EM Metagenome Unclassified
131 3300031911 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1 Metagenome Rhizosphere
132 3300035083 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_17 Metagenome Rhizosphere
133 3300035113 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_12 Metagenome Rhizosphere
134 3300035116 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_3 Metagenome Rhizosphere
135 3300035170 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_1 Metagenome Rhizosphere
136 3300035692 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_11 Metagenome Rhizosphere
137 3300035695 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_19 Metagenome Rhizosphere
138 3300036401 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_16 Metagenome Rhizosphere
139 3300037068 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_16 Metagenome Rhizosphere
140 3300037312 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_B SG_2 Metagenome Rhizosphere
141 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
142 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
143 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
144 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
145 3300039062 Seagrass microbial communities from Seahorse Key, FL, USA - HH0818 Metagenome Unclassified
146 3300039447 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2 v2 Metagenome Rhizosphere
147 3300044683 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA3R Metagenome Rhizosphere
148 3300044693 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC2R Metagenome Rhizosphere
149 3300045049 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC3R Metagenome Rhizosphere
150 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
151 3300046454 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-198-CL2_38_5 rhizosphere Metagenome Rhizosphere
152 3300046455 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-307-CL1_26_33 rhizosphere Metagenome Rhizosphere
153 3300046460 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co3_31_37 rhizosphere Metagenome Rhizosphere
154 3300046472 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL1_35_33 rhizosphere Metagenome Rhizosphere
155 3300046475 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-845-CL1_31_22 rhizosphere Metagenome Rhizosphere
156 3300046501 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co3_27_41 rhizosphere Metagenome Rhizosphere
157 3300046522 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 rhizosphere Metagenome Rhizosphere
158 3300046535 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL1_28_16 rhizosphere Metagenome Rhizosphere
159 3300046543 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL1_28_5 rhizosphere Metagenome Rhizosphere
160 3300046559 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-4579-CL2_50_20 rhizosphere Metagenome Rhizosphere
161 3300046660 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co1_32_7 rhizosphere Metagenome Rhizosphere
162 3300046663 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL3_77_6 rhizosphere Metagenome Rhizosphere
163 3300046675 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-904-CL2_57_20 rhizosphere Metagenome Rhizosphere
164 3300046679 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL2_50_4 rhizosphere Metagenome Rhizosphere
165 3300046681 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL3_83_27 rhizosphere Metagenome Rhizosphere
166 3300046683 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-904-CL3_91_3 rhizosphere Metagenome Rhizosphere
167 3300047315 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL2_39_29 rhizosphere Metagenome Rhizosphere
168 3300047318 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co1_6_4 rhizosphere Metagenome Rhizosphere
169 3300048088 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL2_56_7 rhizosphere Metagenome Rhizosphere
170 3300048914 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4d N15 Metagenome Rhizoplane
171 3300048916 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5d N15 Metagenome Rhizoplane
172 3300048919 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_7x unlabeled Metagenome Unclassified
173 3300048921 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1f N15 Metagenome Unclassified
174 3300048922 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2e N15 Metagenome Unclassified
175 3300048923 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2f N15 Metagenome Unclassified
176 3300048924 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_3e N15 Metagenome Unclassified
177 3300048925 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8x unlabeled Metagenome Unclassified
178 3300048926 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8y unlabeled Metagenome Unclassified
179 3300048927 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_4e N15 Metagenome Unclassified
180 3300048928 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_5e N15 Metagenome Unclassified
181 3300049527 Metatranscriptome of panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - J4_B_0_control (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
182 3300049569 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_02 Metagenome Rhizosphere
183 3300049570 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_03 Metagenome Rhizosphere
184 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
185 3300049572 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 Metagenome Rhizosphere
186 3300049573 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_01 Metagenome Rhizosphere
187 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
188 3300049575 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_03 Metagenome Rhizosphere
189 3300049576 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_01 Metagenome Rhizosphere
190 3300049579 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 Metagenome Rhizosphere
191 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
192 3300049585 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_03 Metagenome Rhizosphere
193 3300049586 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 Metagenome Rhizosphere
194 3300049588 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_03 Metagenome Rhizosphere
195 3300049591 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_03 Metagenome Rhizosphere
196 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
197 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
198 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
199 3300049824 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_03 Metagenome Rhizosphere
200 3300050491 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 re-annotation Metagenome Endosphere
201 3300050493 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 re-annotation Metagenome Endosphere
202 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
203 3300050508 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 re-annotation Metagenome Rhizosphere
204 3300050510 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 re-annotation Metagenome Rhizosphere
205 3300050512 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 re-annotation Metagenome Rhizosphere
206 3300050513 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 re-annotation Metagenome Rhizosphere
207 3300050515 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 re-annotation Metagenome Rhizosphere
208 3300053153 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 endosphere Metagenome Endosphere
209 2857542790 Achromobacter sp. R-72367 Isolate Unclassified
210 2547132103 Chromobacterium sp. C-61 Isolate Rhizosphere
211 2596583598 Ralstonia sp. UNCCL144 Isolate Unclassified
212 2599185178 Ralstonia sp. NFACC01 Isolate Rhizoplane
213 2599185292 Achromobacter sp. NFACC18-2 Isolate Rhizoplane
214 2643221550 Mesorhizobium sp. Root552 Isolate Unclassified
215 2643221554 Duganella sp. Root1480D1 Isolate Unclassified
216 2643221564 Mesorhizobium sp. Root157 Isolate Unclassified
217 2643221569 Achromobacter sp. Root565 Isolate Unclassified
218 2643221594 Achromobacter sp. Root170 Isolate Unclassified
219 2643221621 Achromobacter sp. Root83 Isolate Unclassified
220 2643221689 Rhizobium sp. Root483D2 Isolate Unclassified
221 2808606395 Achromobacter sp. SLBN-14 Isolate Unclassified
222 2818991461 Neorhizobium alkalisoli 1225 Isolate Unclassified
223 2843690924 Chromobacterium rhizoryzae JP2-74 Isolate Rhizosphere
224 2846033681 Chromobacterium sinusclupearum MWU13-2610 Isolate Rhizosphere
225 2855730933 Achromobacter sp. HZ28 Isolate Nodule
226 2855767633 Achromobacter sp. HZ34 Isolate Nodule
227 2857537821 Achromobacter sp. R-71975 Isolate Unclassified
228 2857576091 Pigmentiphaga sp. R-72090 Isolate Unclassified
229 2858688981 Cupriavidus sp. UYMMa02A Isolate Unclassified
230 2858950400 Achromobacter sp. K91 Isolate Unclassified
231 2881412998 Achromobacter aloeverae AVA-1 Isolate Unclassified
232 2885266251 Ralstonia sp. SET104 Isolate Nodule
233 2900577576 Ralstonia sp. TCR112 Isolate Rhizosphere
234 2919171160 Neorhizobium sp. 2083 Isolate Unclassified
235 2928058823 Ralstonia sp. 1138 Isolate Unclassified
236 2941479691
237 8054563764 Acuticoccus kalidii M5D2P5 Isolate Unclassified

Type Distribution

Type Percentage (%)
Metagenomes 88.19
Metatranscriptomes 1.74
Isolates 10.07

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 15.62
Nodule 1.04
Rhizoplane 1.39
Rhizosphere 68.4
Stem 0
Stem Tuber 0
Unclassified 0

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 JGI24741J21665_1001077 3300001915 Bacteria 8165
2 JGI24740J21852_10000051 3300001979 Bacteria 37529
3 JGI24740J21852_10000400 3300001979 Bacteria 18646
4 JGI25156J39149_1009307 3300002705 Bacteria 2399
5 JGI25154J39366_1000429 3300002738 Bacteria 22507
6 JGI25152J39213_1004595 3300002773 Bacteria 4300
7 JGI25151J46595_10000077 3300003187 Bacteria 133862
8 Ga0006556J51387_1026861 3300003479 Bacteria 5423
9 Ga0055539_1000321 3300003752 Bacteria 24630
10 Ga0055533_1000879 3300003756 Bacteria 9093
11 Ga0055532_1000008 3300003758 Bacteria 404753
12 Ga0055525_1000169 3300003759 Bacteria 83336
13 Ga0055527_1000510 3300003760 Bacteria 13509
14 Ga0055535_1000006 3300003761 Bacteria 404753
15 Ga0055542_1000956 3300003762 Bacteria 18924
16 Ga0055529_1000030 3300003763 Bacteria 272455
17 Ga0055530_10003843 3300003791 Bacteria 8234
18 Ga0055541_1001126 3300003841 Bacteria 5997
19 Ga0065704_10113606 3300005289 Bacteria 1908
20 Ga0065707_10083220 3300005295 Bacteria 9947
21 Ga0070670_100006242 3300005331 Bacteria 10083
22 Ga0070670_100094290 3300005331 Bacteria 2574
23 Ga0070661_100000002 3300005344 Bacteria 265686
24 Ga0070668_100007050 3300005347 Bacteria 8329
25 Ga0070675_100016218 3300005354 Bacteria 5911
26 Ga0070675_100081781 3300005354 Bacteria 2694
27 Ga0070671_100099678 3300005355 Bacteria 2437
28 Ga0070659_100000608 3300005366 Bacteria 26248
29 Ga0070667_100092209 3300005367 Bacteria 2606
30 Ga0070663_100000007 3300005455 Bacteria 202632
31 Ga0070706_100092220 3300005467 Bacteria 2810
32 Ga0070707_100102784 3300005468 Bacteria 2769
33 Ga0070698_100109268 3300005471 Bacteria 2732
34 Ga0070699_100152049 3300005518 Bacteria 2048
35 Ga0070672_100003234 3300005543 Bacteria 10548
36 Ga0070672_100083592 3300005543 Bacteria 2562
37 Ga0070695_100029671 3300005545 Bacteria 3400
38 Ga0070693_100003443 3300005547 Bacteria 7382
39 Ga0070693_100016260 3300005547 Bacteria 3847
40 Ga0070665_100131133 3300005548 Bacteria 2509
41 Ga0070704_100022819 3300005549 Bacteria 4077
42 Ga0070664_100000001 3300005564 Bacteria 551832
43 Ga0068854_100000185 3300005578 Bacteria 42068
44 Ga0068856_100000007 3300005614 Bacteria 213669
45 Ga0068856_100111837 3300005614 Bacteria 2729
46 Ga0068859_100004852 3300005617 Bacteria 13683
47 Ga0068859_100126935 3300005617 Bacteria 2620
48 Ga0068864_100001812 3300005618 Bacteria 17534
49 Ga0068864_100009515 3300005618 Bacteria 8021
50 Ga0068866_10005447 3300005718 Bacteria 5252
51 Ga0068861_100007883 3300005719 Bacteria 7328
52 Ga0068861_100011195 3300005719 Bacteria 6229
53 Ga0068858_100024662 3300005842 Bacteria 5601
54 Ga0068860_100005312 3300005843 Bacteria 13077
55 Ga0068860_100041672 3300005843 Bacteria 4386
56 Ga0068862_100050022 3300005844 Bacteria 3571
57 Ga0075364_10000328 3300006051 Bacteria 23550
58 Ga0075364_10017205 3300006051 Bacteria 4512
59 Ga0075366_10003598 3300006195 Bacteria 8207
60 Ga0097621_100035526 3300006237 Bacteria 3983
61 Ga0068871_100158318 3300006358 Bacteria 1935
62 Ga0075430_100011263 3300006846 Bacteria 7587
63 Ga0075433_10069395 3300006852 Bacteria 3096
64 Ga0075434_100054644 3300006871 Bacteria 3967
65 Ga0075429_100001374 3300006880 Bacteria 19911
66 Ga0075436_100069000 3300006914 Bacteria 2443
67 Ga0097620_100004852 3300006931 Bacteria 13683
68 Ga0097620_100126927 3300006931 Bacteria 2620
69 Ga0075435_100020372 3300007076 Bacteria 5081
70 Ga0099795_10000034 3300007788 Bacteria 36525
71 Ga0105240_10156530 3300009093 Bacteria 2709
72 Ga0114129_10016719 3300009147 Bacteria 10449
73 Ga0105242_10014642 3300009176 Bacteria 6072
74 Ga0105242_10037781 3300009176 Bacteria 3881
75 Ga0105248_10308366 3300009177 Bacteria 1782
76 Ga0157373_10121759 3300013100 Bacteria 1834
77 Ga0157371_10000035 3300013102 Bacteria 223396
78 Ga0157370_10000161 3300013104 Bacteria 82233
79 Ga0157369_10000908 3300013105 Bacteria 37806
80 Ga0157369_10007348 3300013105 Bacteria 12683
81 Ga0157378_10063281 3300013297 Bacteria 3305
82 Ga0157372_10000522 3300013307 Bacteria 42436
83 Ga0157375_10022936 3300013308 Bacteria 5752
84 Ga0157375_10106193 3300013308 Bacteria 2900
85 Ga0163163_10006142 3300014325 Bacteria 10467
86 Ga0163163_10016590 3300014325 Bacteria 6850
87 Ga0157380_10042793 3300014326 Bacteria 3542
88 Ga0157376_10003536 3300014969 Bacteria 10772
89 Ga0182006_1003037 3300015261 Bacteria 8826
90 Ga0206355_1624367 3300020076 Bacteria 4540
91 Ga0206351_10600043 3300020077 Bacteria 7842
92 Ga0154015_1157012 3300020610 Bacteria 7194
93 Ga0209784_100014 3300025224 Bacteria 496182
94 Ga0209784_100269 3300025224 Bacteria 30295
95 Ga0209566_100011 3300025225 Bacteria 496182
96 Ga0209566_100591 3300025225 Bacteria 22954
97 Ga0209674_100032 3300025226 Bacteria 426888
98 Ga0209674_100304 3300025226 Bacteria 33311
99 Ga0209672_100094 3300025228 Bacteria 113800
100 Ga0209147_100002 3300025229 Bacteria 2158988
101 Ga0209563_100029 3300025230 Bacteria 496182
102 Ga0209258_100002 3300025242 Bacteria 2158988
103 Ga0207425_1000017 3300025245 Bacteria 423851
104 Ga0209646_1000035 3300025246 Bacteria 363209
105 Ga0209677_100081 3300025253 Bacteria 120362
106 Ga0209677_105525 3300025253 Bacteria 3273
107 Ga0209148_1000158 3300025254 Bacteria 140830
108 Ga0209759_1001953 3300025256 Bacteria 9935
109 Ga0209129_1000039 3300025258 Bacteria 322444
110 Ga0209455_1000009 3300025272 Bacteria 1042273
111 Ga0209130_1000491 3300025284 Bacteria 40619
112 Ga0209025_1000003 3300025294 Bacteria 1366495
113 Ga0209564_1002252 3300025295 Bacteria 15819
114 Ga0209758_1000155 3300025297 Bacteria 160455
115 Ga0209758_1000192 3300025297 Bacteria 136933
116 Ga0209050_1000762 3300025298 Bacteria 46324
117 Ga0209050_1005371 3300025298 Bacteria 8094
118 Ga0209050_1007825 3300025298 Bacteria 5877
119 Ga0209256_1000651 3300025299 Bacteria 47267
120 Ga0209256_1000744 3300025299 Bacteria 42676
121 Ga0207688_10044283 3300025901 Bacteria 2480
122 Ga0207695_10011976 3300025913 Bacteria 10436
123 Ga0207695_10016851 3300025913 Bacteria 8530
124 Ga0207695_10167117 3300025913 Bacteria 2127
125 Ga0207649_10001577 3300025920 Bacteria 13287
126 Ga0207646_10006617 3300025922 Bacteria 11962
127 Ga0207650_10004260 3300025925 Bacteria 9763
128 Ga0207650_10019328 3300025925 Bacteria 4784
129 Ga0207659_10016733 3300025926 Bacteria 4778
130 Ga0207690_10003122 3300025932 Bacteria 9974
131 Ga0207706_10067031 3300025933 Bacteria 3158
132 Ga0207686_10015950 3300025934 Bacteria 4210
133 Ga0207665_10074868 3300025939 Bacteria 2318
134 Ga0207691_10002303 3300025940 Bacteria 18711
135 Ga0207691_10004067 3300025940 Bacteria 14186
136 Ga0207691_10006730 3300025940 Bacteria 11083
137 Ga0207689_10007557 3300025942 Bacteria 9533
138 Ga0207679_10000003 3300025945 Bacteria 597553
139 Ga0207668_10016090 3300025972 Bacteria 4661
140 Ga0207668_10022282 3300025972 Bacteria 4053
141 Ga0207640_10000083 3300025981 Bacteria 74852
142 Ga0207703_10080179 3300026035 Bacteria 2718
143 Ga0207678_10000002 3300026067 Bacteria 371723
144 Ga0207641_10008422 3300026088 Bacteria 8524
145 Ga0207648_10096790 3300026089 Bacteria 2583
146 Ga0207676_10004319 3300026095 Bacteria 10052
147 Ga0207674_10008421 3300026116 Bacteria 11912
148 Ga0207674_10018408 3300026116 Bacteria 7593
149 Ga0207675_100005668 3300026118 Bacteria 11953
150 Ga0207675_100022495 3300026118 Bacteria 5870
151 Ga0207683_10008597 3300026121 Bacteria 8733
152 Ga0207698_10096679 3300026142 Bacteria 2435
153 Ga0209999_1003792 3300027543 Bacteria 2713
154 Ga0268266_10133893 3300028379 Bacteria 2219
155 Ga0268265_10086609 3300028380 Bacteria 2490
156 Ga0268264_10034405 3300028381 Bacteria 4168
157 Ga0265330_10012609 3300031235 Bacteria 3950
158 Ga0265332_10002629 3300031238 Bacteria 9050
159 Ga0265328_10036098 3300031239 Bacteria 1827
160 Ga0265331_10003290 3300031250 Bacteria 10506
161 Ga0265316_10005756 3300031344 Bacteria 11966
162 Ga0307509_10000053 3300031507 Bacteria 164364
163 Ga0307412_10000078 3300031911 Bacteria 94880
164 Ga0373926_0004501 3300035083 Bacteria 4571
165 Ga0373936_0007891 3300035113 Bacteria 3998
166 Ga0373945_0003007 3300035116 Bacteria 5302
167 Ga0373943_0003480 3300035170 Bacteria 7164
168 Ga0373935_0037018 3300035692 Bacteria 3052
169 Ga0373927_0011846 3300035695 Bacteria 5808
170 Ga0373937_0006843 3300036401 Bacteria 9837
171 Ga0373937_0011057 3300036401 Bacteria 7912
172 Ga0373937_0073098 3300036401 Bacteria 3163
173 Ga0373925_0047634 3300037068 Bacteria 3191
174 Ga0395899_0000044 3300037312 Bacteria 248735
175 Ga0395900_0000042 3300037418 Bacteria 242667
176 Ga0395900_0015924 3300037418 Bacteria 7661
177 Ga0395898_0000080 3300037466 Bacteria 242667
178 Ga0395905_0000044 3300037471 Bacteria 242916
179 Ga0395901_0000027 3300038443 Bacteria 244204
180 Ga0400483_034786 3300039062 Bacteria 4982
181 Ga0436361_0270077 3300039447 Bacteria 30158
182 Ga0466965_0007541 3300044683 Bacteria 5003
183 Ga0466961_0006267 3300044693 Bacteria 7552
184 Ga0466959_0002077 3300045049 Bacteria 12673
185 Ga0451576_0003580 3300045051 Bacteria 21130
186 Ga0495592_0007576 3300046454 Bacteria 8128
187 Ga0495603_0024444 3300046455 Bacteria 3654
188 Ga0495638_0007909 3300046460 Bacteria 7583
189 Ga0495580_0036734 3300046472 Bacteria 3516
190 Ga0495639_0023194 3300046475 Bacteria 2726
191 Ga0495607_0000920 3300046501 Bacteria 27401
192 Ga0495643_0010247 3300046522 Bacteria 5773
193 Ga0495586_0003011 3300046535 Bacteria 9088
194 Ga0495645_0003648 3300046543 Bacteria 10458
195 Ga0495667_0037396 3300046559 Bacteria 3235
196 Ga0495625_0019307 3300046660 Bacteria 5292
197 Ga0495635_0047238 3300046663 Bacteria 2970
198 Ga0495657_0045166 3300046675 Bacteria 2991
199 Ga0495623_0085865 3300046679 Bacteria 1940
200 Ga0495647_0000449 3300046681 Bacteria 11857
201 Ga0495658_0004573 3300046683 Bacteria 6807
202 Ga0495581_0033242 3300047315 Bacteria 2986
203 Ga0495636_0037015 3300047318 Bacteria 2014
204 Ga0495602_0025496 3300048088 Bacteria 5723
205 Ga0496111_0007590 3300048914 Bacteria 7121
206 Ga0496113_0091020 3300048916 Bacteria 2351
207 Ga0496116_0015024 3300048919 Bacteria 6140
208 Ga0496118_0067611 3300048921 Bacteria 2600
209 Ga0496119_0042945 3300048922 Bacteria 2862
210 Ga0496120_0015759 3300048923 Bacteria 4969
211 Ga0496121_0000153 3300048924 Bacteria 150635
212 Ga0496121_0012940 3300048924 Bacteria 9020
213 Ga0496121_0016871 3300048924 Bacteria 7509
214 Ga0496122_0000186 3300048925 Bacteria 144012
215 Ga0496123_0000162 3300048926 Bacteria 134316
216 Ga0496124_0000007 3300048927 Bacteria 883534
217 Ga0496124_0109904 3300048927 Bacteria 2220
218 Ga0496125_0000023 3300048928 Bacteria 449042
219 Ga0496125_0027034 3300048928 Bacteria 5210
220 Ga0501311_001538 3300049527 Bacteria 2033
221 Ga0501032_0000001 3300049569 Bacteria 422097
222 Ga0501033_0000092 3300049570 Bacteria 85398
223 Ga0501034_0000036 3300049571 Bacteria 239274
224 Ga0501034_0050836 3300049571 Bacteria 4179
225 Ga0501036_0000078 3300049572 Bacteria 60614
226 Ga0501036_0033378 3300049572 Bacteria 4353
227 Ga0501037_0000017 3300049573 Bacteria 157276
228 Ga0501038_0000036 3300049574 Bacteria 124766
229 Ga0501039_0000011 3300049575 Bacteria 245124
230 Ga0501040_0018590 3300049576 Bacteria 4615
231 Ga0501043_0000105 3300049579 Bacteria 78189
232 Ga0501047_0000740 3300049581 Bacteria 34045
233 Ga0501069_0005279 3300049585 Bacteria 6710
234 Ga0501070_0000215 3300049586 Bacteria 54743
235 Ga0501070_0000747 3300049586 Bacteria 29640
236 Ga0501070_0014406 3300049586 Bacteria 6652
237 Ga0501072_0099530 3300049588 Bacteria 2311
238 Ga0501075_0127834 3300049591 Bacteria 1935
239 Ga0501080_0000542 3300049742 Bacteria 29722
240 Ga0501035_0000028 3300049822 Bacteria 179195
241 Ga0501035_0000374 3300049822 Bacteria 51467
242 Ga0501035_0002288 3300049822 Bacteria 18934
243 Ga0501035_0003206 3300049822 Bacteria 15680
244 Ga0501044_0003331 3300049823 Bacteria 18108
245 Ga0501044_0004322 3300049823 Bacteria 15928
246 Ga0501044_0014562 3300049823 Bacteria 8483
247 Ga0501044_0023991 3300049823 Bacteria 6481
248 Ga0501045_0065123 3300049824 Bacteria 2676
249 nmdc:mga00v17_4707_c1 3300050491 Bacteria 7130
250 nmdc:mga00v17_56551_c1 3300050491 Bacteria 2399
251 nmdc:mga0k408_23802_c1 3300050493 Bacteria 3459
252 nmdc:mga05p37_261_c1 3300050507 Bacteria 54694
253 nmdc:mga09592_119_c1 3300050508 Bacteria 50089
254 nmdc:mga06r32_2251_c1 3300050510 Bacteria 17269
255 nmdc:mga06r32_234189_c1 3300050510 Bacteria 1824
256 nmdc:mga0n895_125899_c1 3300050512 Bacteria 2586
257 nmdc:mga0rr50_8033_c1 3300050513 Bacteria 6543
258 nmdc:mga0a205_92302_c1 3300050515 Bacteria 2925
259 Ga0500616_0001898 3300053153 Bacteria 18735
260 2857544535 2857542790 Bacteria 5326616
261 2547375327 2547132103 Bacteria 5115736
262 2597029814 2596583598 Bacteria 5251611
263 2599446802 2599185178 Bacteria 5365746
264 2599907722 2599185292 Bacteria 6290804
265 2643769954 2643221550 Bacteria 4619371
266 2643787994 2643221554 Bacteria 6603920
267 2643840140 2643221564 Bacteria 4193379
268 2643859133 2643221569 Bacteria 6064337
269 2643979826 2643221594 Bacteria 5811388
270 2644123001 2643221621 Bacteria 6212786
271 2644499093 2643221689 Bacteria 6042950
272 2809033748 2808606395 Bacteria 6020352
273 2819687389 2818991461 Bacteria 7026071
274 2843694302 2843690924 Bacteria 5169057
275 2846036092 2846033681 Bacteria 4377894
276 2855736843 2855730933 Bacteria 7047938
277 2855773780 2855767633 Bacteria 7049357
278 2857542437 2857537821 Bacteria 5248181
279 2857579855 2857576091 Bacteria 5465855
280 2858695544 2858688981 Bacteria 8184122
281 2858956351 2858950400 Bacteria 6783797
282 2881417586 2881412998 Bacteria 6492157
283 2885267766 2885266251 Bacteria 4796748
284 2900577592 2900577576 Bacteria 5438534
285 2919175313 2919171160 Bacteria 6499771
286 2928061821 2928058823 Bacteria 5520022
287 2941484860
288 8054564927 8054563764 Bacteria 5592885
289 JGI24741J21665_1001077
290 JGI24740J21852_10000051
291 JGI24740J21852_10000400
292 JGI25156J39149_1009307
293 JGI25154J39366_1000429
294 JGI25152J39213_1004595
295 JGI25151J46595_10000077
296 Ga0006556J51387_1026861
297 Ga0055539_1000321
298 Ga0055533_1000879
299 Ga0055532_1000008
300 Ga0055525_1000169
301 Ga0055527_1000510
302 Ga0055535_1000006
303 Ga0055542_1000956
304 Ga0055529_1000030
305 Ga0055530_10003843
306 Ga0055541_1001126
307 Ga0065704_10113606
308 Ga0065707_10083220
309 Ga0070670_100006242
310 Ga0070670_100094290
311 Ga0070661_100000002
312 Ga0070668_100007050
313 Ga0070675_100016218
314 Ga0070675_100081781
315 Ga0070671_100099678
316 Ga0070659_100000608
317 Ga0070667_100092209
318 Ga0070663_100000007
319 Ga0070706_100092220
320 Ga0070707_100102784
321 Ga0070698_100109268
322 Ga0070699_100152049
323 Ga0070672_100003234
324 Ga0070672_100083592
325 Ga0070695_100029671
326 Ga0070693_100003443
327 Ga0070693_100016260
328 Ga0070665_100131133
329 Ga0070704_100022819
330 Ga0070664_100000001
331 Ga0068854_100000185
332 Ga0068856_100000007
333 Ga0068856_100111837
334 Ga0068859_100004852
335 Ga0068859_100126935
336 Ga0068864_100001812
337 Ga0068864_100009515
338 Ga0068866_10005447
339 Ga0068861_100007883
340 Ga0068861_100011195
341 Ga0068858_100024662
342 Ga0068860_100005312
343 Ga0068860_100041672
344 Ga0068862_100050022
345 Ga0075364_10000328
346 Ga0075364_10017205
347 Ga0075366_10003598
348 Ga0097621_100035526
349 Ga0068871_100158318
350 Ga0075430_100011263
351 Ga0075433_10069395
352 Ga0075434_100054644
353 Ga0075429_100001374
354 Ga0075436_100069000
355 Ga0097620_100004852
356 Ga0097620_100126927
357 Ga0075435_100020372
358 Ga0099795_10000034
359 Ga0105240_10156530
360 Ga0114129_10016719
361 Ga0105242_10014642
362 Ga0105242_10037781
363 Ga0105248_10308366
364 Ga0157373_10121759
365 Ga0157371_10000035
366 Ga0157370_10000161
367 Ga0157369_10000908
368 Ga0157369_10007348
369 Ga0157378_10063281
370 Ga0157372_10000522
371 Ga0157375_10022936
372 Ga0157375_10106193
373 Ga0163163_10006142
374 Ga0163163_10016590
375 Ga0157380_10042793
376 Ga0157376_10003536
377 Ga0182006_1003037
378 Ga0206355_1624367
379 Ga0206351_10600043
380 Ga0154015_1157012
381 Ga0209784_100014
382 Ga0209784_100269
383 Ga0209566_100011
384 Ga0209566_100591
385 Ga0209674_100032
386 Ga0209674_100304
387 Ga0209672_100094
388 Ga0209147_100002
389 Ga0209563_100029
390 Ga0209258_100002
391 Ga0207425_1000017
392 Ga0209646_1000035
393 Ga0209677_100081
394 Ga0209677_105525
395 Ga0209148_1000158
396 Ga0209759_1001953
397 Ga0209129_1000039
398 Ga0209455_1000009
399 Ga0209130_1000491
400 Ga0209025_1000003
401 Ga0209564_1002252
402 Ga0209758_1000155
403 Ga0209758_1000192
404 Ga0209050_1000762
405 Ga0209050_1005371
406 Ga0209050_1007825
407 Ga0209256_1000651
408 Ga0209256_1000744
409 Ga0207688_10044283
410 Ga0207695_10011976
411 Ga0207695_10016851
412 Ga0207695_10167117
413 Ga0207649_10001577
414 Ga0207646_10006617
415 Ga0207650_10004260
416 Ga0207650_10019328
417 Ga0207659_10016733
418 Ga0207690_10003122
419 Ga0207706_10067031
420 Ga0207686_10015950
421 Ga0207665_10074868
422 Ga0207691_10002303
423 Ga0207691_10004067
424 Ga0207691_10006730
425 Ga0207689_10007557
426 Ga0207679_10000003
427 Ga0207668_10016090
428 Ga0207668_10022282
429 Ga0207640_10000083
430 Ga0207703_10080179
431 Ga0207678_10000002
432 Ga0207641_10008422
433 Ga0207648_10096790
434 Ga0207676_10004319
435 Ga0207674_10008421
436 Ga0207674_10018408
437 Ga0207675_100005668
438 Ga0207675_100022495
439 Ga0207683_10008597
440 Ga0207698_10096679
441 Ga0209999_1003792
442 Ga0268266_10133893
443 Ga0268265_10086609
444 Ga0268264_10034405
445 Ga0265330_10012609
446 Ga0265332_10002629
447 Ga0265328_10036098
448 Ga0265331_10003290
449 Ga0265316_10005756
450 Ga0307509_10000053
451 Ga0307412_10000078
452 Ga0373926_0004501
453 Ga0373936_0007891
454 Ga0373945_0003007
455 Ga0373943_0003480
456 Ga0373935_0037018
457 Ga0373927_0011846
458 Ga0373937_0006843
459 Ga0373937_0011057
460 Ga0373937_0073098
461 Ga0373925_0047634
462 Ga0395899_0000044
463 Ga0395900_0000042
464 Ga0395900_0015924
465 Ga0395898_0000080
466 Ga0395905_0000044
467 Ga0395901_0000027
468 Ga0400483_034786
469 Ga0436361_0270077
470 Ga0466965_0007541
471 Ga0466961_0006267
472 Ga0466959_0002077
473 Ga0451576_0003580
474 Ga0495592_0007576
475 Ga0495603_0024444
476 Ga0495638_0007909
477 Ga0495580_0036734
478 Ga0495639_0023194
479 Ga0495607_0000920
480 Ga0495643_0010247
481 Ga0495586_0003011
482 Ga0495645_0003648
483 Ga0495667_0037396
484 Ga0495625_0019307
485 Ga0495635_0047238
486 Ga0495657_0045166
487 Ga0495623_0085865
488 Ga0495647_0000449
489 Ga0495658_0004573
490 Ga0495581_0033242
491 Ga0495636_0037015
492 Ga0495602_0025496
493 Ga0496111_0007590
494 Ga0496113_0091020
495 Ga0496116_0015024
496 Ga0496118_0067611
497 Ga0496119_0042945
498 Ga0496120_0015759
499 Ga0496121_0000153
500 Ga0496121_0012940
501 Ga0496121_0016871
502 Ga0496122_0000186
503 Ga0496123_0000162
504 Ga0496124_0000007
505 Ga0496124_0109904
506 Ga0496125_0000023
507 Ga0496125_0027034
508 Ga0501311_001538
509 Ga0501032_0000001
510 Ga0501033_0000092
511 Ga0501034_0000036
512 Ga0501034_0050836
513 Ga0501036_0000078
514 Ga0501036_0033378
515 Ga0501037_0000017
516 Ga0501038_0000036
517 Ga0501039_0000011
518 Ga0501040_0018590
519 Ga0501043_0000105
520 Ga0501047_0000740
521 Ga0501069_0005279
522 Ga0501070_0000215
523 Ga0501070_0000747
524 Ga0501070_0014406
525 Ga0501072_0099530
526 Ga0501075_0127834
527 Ga0501080_0000542
528 Ga0501035_0000028
529 Ga0501035_0000374
530 Ga0501035_0002288
531 Ga0501035_0003206
532 Ga0501044_0003331
533 Ga0501044_0004322
534 Ga0501044_0014562
535 Ga0501044_0023991
536 Ga0501045_0065123
537 nmdc:mga00v17_4707_c1
538 nmdc:mga00v17_56551_c1
539 nmdc:mga0k408_23802_c1
540 nmdc:mga05p37_261_c1
541 nmdc:mga09592_119_c1
542 nmdc:mga06r32_2251_c1
543 nmdc:mga06r32_234189_c1
544 nmdc:mga0n895_125899_c1
545 nmdc:mga0rr50_8033_c1
546 nmdc:mga0a205_92302_c1
547 Ga0500616_0001898
548 2857544535
549 2547375327
550 2597029814
551 2599446802
552 2599907722
553 2643769954
554 2643787994
555 2643840140
556 2643859133
557 2643979826
558 2644123001
559 2644499093
560 2809033748
561 2819687389
562 2843694302
563 2846036092
564 2855736843
565 2855773780
566 2857542437
567 2857579855
568 2858695544
569 2858956351
570 2881417586
571 2885267766
572 2900577592
573 2919175313
574 2928061821
575 2941484860
576 8054564927

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF01077

NIR_SIR

Nitrite and sulphite reductase 4Fe-4S domain

126

281

0.98

PF03460

NIR_SIR_ferr

Nitrite/Sulfite reductase ferredoxin-like half domain

53

118

0.94

PF03460

NIR_SIR_ferr

Nitrite/Sulfite reductase ferredoxin-like half domain

334

406

0.92

PF01077

NIR_SIR

Nitrite and sulphite reductase 4Fe-4S domain

414

578

0.82

Structural Annotation

Top 5 Hits

ID Description Score Start End
6c3z-assembly1.cif.gz_A t477a sirhp 0.8174 54 537
6c3x-assembly1.cif.gz_A wild type structure of sirhp 0.8144 54 540
1zj9-assembly2.cif.gz_B structure of mycobacterium tuberculosis nira protein 0.8123 31 543
5gep-assembly1.cif.gz_A sulfite reductase hemoprotein carbon monoxide complex reduced with crii edta 0.8123 54 537
6c3y-assembly1.cif.gz_A wild type structure of sirhp 0.8121 54 540
ID Description Score Start End Superfamily
af_Q60EA3_125_197_3.90.480.10 Alpha Beta;Alpha-Beta Complex;Sulfite Reductase Hemoprotein; domain 2;Sulfite Reductase Hemoprotein;Domain 2 0.8974 50 120 3.90.480.10
af_Q2FVL8_631_763_3.30.413.10 Alpha Beta;2-Layer Sandwich;Sulfite Reductase Hemoprotein; domain 1;Sulfite Reductase Hemoprotein, domain 1 0.8785 414 552 3.30.413.10
af_Q2FVL8_530_630_3.90.480.10 Alpha Beta;Alpha-Beta Complex;Sulfite Reductase Hemoprotein; domain 2;Sulfite Reductase Hemoprotein;Domain 2 0.8711 45 109 3.90.480.10
af_P17846_72_140_3.90.480.10 Alpha Beta;Alpha-Beta Complex;Sulfite Reductase Hemoprotein; domain 2;Sulfite Reductase Hemoprotein;Domain 2 0.8698 46 111 3.90.480.10
af_Q1K9C2_887_1062_3.90.480.20 Alpha Beta;Alpha-Beta Complex;Sulfite Reductase Hemoprotein; domain 2; 0.8679 39 127 3.90.480.20
ID Description Score Start End GO Terms
AF-A0A3M1J539-F1-model_v4 Nitrite/sulfite reductase 0.9948 1 113 GO:0016491
AF-A0A6P1B1K6-F1-model_v4 deleted 0.9919 471 548
AF-A0A3M1J539-F1-model_v4 Nitrite/sulfite reductase 0.9861 1 113 GO:0016491
AF-A0A0K9I507-F1-model_v4 deleted 0.9861 294 507
AF-A0A367M2J0-F1-model_v4 Nitrite/sulfite reductase 0.9848 1 106 GO:0016491

Map