F395656

General Info

Members Datasets Scaffolds Average Seq Length
300 199 600 1042

Family's Representative Sequence

Representative Sequence iso_pu_bacteria|2990265787|2990268667
Length 1096
Sequence IFIDRPIFAWVLAIIVMLAGVGGILGLPIAQYPDVAPPQVSIRATYPGANAQTIQNSVTQVVEQTLTGIDGLLYFQSASSSRGQVTITVTFDKGTDPDIAQVQVQNQVQQALPRLPQQVQQQGLIVRKSNPDFLLVAAVYDTTDRTTNRDVSDYLTSSLQDPLGRTPGVGDTNVFGSQYAMRIWLDPNKLNAYQLIPSDVVQAIQTQNTEVAAGELGGQPSGANQYLNAVVTAQSRLQTPEQFRNILLKTTNDGAAVRIKDVGWVELGAESYAALSRVNAHPGAGIAVLLAPGADALKTAELVKAQVAESAKSFPPGYEYTFVNDSTEFIKLSIEEVVKTLIEAIILVVIVMFVFLQSWRATLVPAIAVPVVLLGTFAVFYLAGFSINTLTLFGLVLAIGLLVDDAIVVVENVERLLEENPGMSPREATIQSMDEITVALIAIALVLSAVFLPMAFFGGSTGVIYRQFSLTIVSAMILSVLVALILSPALTATLLKQKKQDESGDPIDDSFLGRRFPKVAHFFERARDNFNNGFDRASDRYVGAVKAIVARKWLWLGIYVVVVAVLALLFLRLPTGFLPTEDQGIGIVQFQLPPGSTQNRTFEVQKEVEKYFLTNEGKNIATAFSVSGIGGGGAPGGQNTGLGFVALKNWSEREGKENSADAITGRASGAFSNLRDAQVYALVPPAVRGLGQSNGFTIELQNTSGMSIEKFEAARDKLLAAASAEPSLVGVRLTELPDVPTLHVDVDPQKLSSFGLTQANVNATLSAAWGGQYVNDFLDRGRVKRVFVQGDAPYRSKPSDLDQWFVRGSQGQMVPFSSFATTNWQKAPVSLSRFNGIQSYEFQGSAAPGQSSGQALETMRRLAGQIPGTSVALAGLSYQEDVSSGQAPILYGLSILVVFLCLAALYESWSIPFAVLLIIPLGLIGAIAFVTLRGLTNDVYLQIGLLTTMGLAAKNAILMIEFAEQAERQGKRVMDAALEAAKIRLRPILMTSFAFIFGVLPLAISTGAGANSRIAIGTAVIGGMLSATFLAIFYIPLFFVLVRRGVRDGIAKLRGRPTGHQGKDDDHGDGDTPYGPPRPQGPHQPQNGHQTRPEPA

Samples

Sample ID Description Type Environment
1 2162886007 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 v1 Metagenome Rhizosphere
2 3300002459 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6 Metagenome Rhizosphere
3 3300003214 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mCL Metagenome Endosphere
4 3300003215 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF Metagenome Endosphere
5 3300003773 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mTSA_r2 Metagenome Endosphere
6 3300005289 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 v2 (version 2) Metagenome Rhizosphere
7 3300005327 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG Metagenome Rhizosphere
8 3300005329 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG Metagenome Rhizosphere
9 3300005331 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG Metagenome Rhizosphere
10 3300005333 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-3 metaG Metagenome Rhizosphere
11 3300005335 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG Metagenome Rhizosphere
12 3300005339 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG Metagenome Rhizosphere
13 3300005347 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG Metagenome Rhizosphere
14 3300005353 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG Metagenome Rhizosphere
15 3300005355 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG Metagenome Rhizosphere
16 3300005366 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG Metagenome Rhizosphere
17 3300005367 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG Metagenome Rhizosphere
18 3300005456 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG Metagenome Rhizosphere
19 3300005458 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG Metagenome Rhizosphere
20 3300005459 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 Metagenome Rhizosphere
21 3300005530 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG Metagenome Rhizosphere
22 3300005539 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 Metagenome Rhizosphere
23 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
24 3300005577 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 Metagenome Rhizosphere
25 3300005578 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 Metagenome Rhizosphere
26 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
27 3300005616 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 Metagenome Rhizosphere
28 3300005617 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 Metagenome Rhizosphere
29 3300005618 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 Metagenome Rhizosphere
30 3300005719 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 Metagenome Rhizosphere
31 3300005834 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C1-2 Metagenome Rhizosphere
32 3300005841 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 Metagenome Rhizosphere
33 3300005842 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 Metagenome Rhizosphere
34 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
35 3300005844 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 Metagenome Rhizosphere
36 3300006038 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 Metagenome Endosphere
37 3300006042 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-3 Metagenome Endosphere
38 3300006051 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 Metagenome Endosphere
39 3300006178 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 Metagenome Endosphere
40 3300006195 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 Metagenome Endosphere
41 3300006237 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2) (version 2) Metagenome Rhizosphere
42 3300006358 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 Metagenome Rhizosphere
43 3300006881 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 Metagenome Rhizosphere
44 3300006931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 (version 2) (version 2) Metagenome Rhizosphere
45 3300009098 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG Metagenome Rhizosphere
46 3300009148 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG Metagenome Rhizosphere
47 3300009174 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG Metagenome Rhizosphere
48 3300009177 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG Metagenome Rhizosphere
49 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
50 3300009553 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG Metagenome Rhizosphere
51 3300011119 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG Metagenome Rhizosphere
52 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
53 3300014325 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG Metagenome Rhizosphere
54 3300014968 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG Metagenome Rhizosphere
55 3300015690 Rizhosphere microbial communities from mature sugarcane plants Campinas, Sao Paulo, Brazil - 001.1_D05 Metagenome Rhizosphere
56 3300021384 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 Metagenome Unclassified
57 3300025261 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mCL (SPAdes) (version 2) Metagenome Endosphere
58 3300025263 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mTSA_r2 (SPAdes) (version 3) Metagenome Endosphere
59 3300025273 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMS_r2 (SPAdes) (version 3) Metagenome Endosphere
60 3300025297 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF (SPAdes) (version 2) Metagenome Endosphere
61 3300025299 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mCL_r2 (SPAdes) (version 3) Metagenome Endosphere
62 3300025315 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA, with PhiX - S5 (SPAdes) (version 2) Metagenome Rhizosphere
63 3300025735 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
64 3300025909 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
65 3300025911 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
66 3300025917 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
67 3300025919 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
68 3300025921 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
69 3300025923 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
70 3300025924 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
71 3300025925 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
72 3300025931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
73 3300025941 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
74 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
75 3300025972 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
76 3300025981 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 (SPAdes) (version 2) Metagenome Rhizosphere
77 3300026035 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes) (version 2) Metagenome Rhizosphere
78 3300026041 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes) (version 2) Metagenome Rhizosphere
79 3300026088 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes) (version 2) Metagenome Rhizosphere
80 3300026089 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes) (version 2) Metagenome Rhizosphere
81 3300026095 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes) (version 2) Metagenome Rhizosphere
82 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
83 3300026118 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes) (version 2) Metagenome Rhizosphere
84 3300026121 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
85 3300026142 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes) (version 2) Metagenome Rhizosphere
86 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
87 3300028380 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes) (version 2) Metagenome Rhizosphere
88 3300028381 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) Metagenome Rhizosphere
89 3300028577 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-21 metaG Metagenome Rhizosphere
90 3300028800 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG Metagenome Rhizosphere
91 3300031250 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-23 metaG Metagenome Rhizosphere
92 3300031251 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-21 metaG Metagenome Rhizosphere
93 3300031595 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-23 metaG Metagenome Rhizosphere
94 3300031616 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 9_EM Metagenome Unclassified
95 3300031824 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-2 Metagenome Rhizosphere
96 3300031852 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-3 Metagenome Rhizosphere
97 3300031903 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-1 Metagenome Rhizosphere
98 3300031911 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1 Metagenome Rhizosphere
99 3300032005 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-1 Metagenome Rhizosphere
100 3300033180 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 12_EM Metagenome Unclassified
101 3300039450 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R7 v2 Metagenome Unclassified
102 3300041462 Perennial ryegrass root microbial community from Lincoln, Canterbury, New Zealand - RGR18_8 MetaG Metagenome Rhizoplane
103 3300045976 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA4R Metagenome Rhizosphere
104 3300046452 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-351-Co3_11_46 rhizosphere Metagenome Rhizosphere
105 3300046453 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co3_8_57 rhizosphere Metagenome Rhizosphere
106 3300046460 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co3_31_37 rhizosphere Metagenome Rhizosphere
107 3300046471 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co3_9_34 rhizosphere Metagenome Rhizosphere
108 3300046500 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co1_23_3 rhizosphere Metagenome Rhizosphere
109 3300046501 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co3_27_41 rhizosphere Metagenome Rhizosphere
110 3300046512 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co2_50_17 rhizosphere Metagenome Rhizosphere
111 3300046515 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co2_62_25 rhizosphere Metagenome Rhizosphere
112 3300046519 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co2_51_16 rhizosphere Metagenome Rhizosphere
113 3300046522 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 rhizosphere Metagenome Rhizosphere
114 3300046538 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co1_12_7 rhizosphere Metagenome Rhizosphere
115 3300046558 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co3_6_53 rhizosphere Metagenome Rhizosphere
116 3300046616 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co1_14_4 rhizosphere Metagenome Rhizosphere
117 3300046660 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co1_32_7 rhizosphere Metagenome Rhizosphere
118 3300046810 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co2_51_17 rhizosphere Metagenome Rhizosphere
119 3300047445 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co1_16_8 rhizosphere Metagenome Rhizosphere
120 3300047470 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWA-24-3-Co1_3_5 rhizosphere Metagenome Rhizosphere
121 3300047472 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co2_54_22 rhizosphere Metagenome Rhizosphere
122 3300048090 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-351-Co1_10_3 rhizosphere Metagenome Rhizosphere
123 3300048091 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co2_54_7 rhizosphere Metagenome Rhizosphere
124 3300048906 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1d N15 Metagenome Rhizoplane
125 3300048918 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6d N15 Metagenome Rhizoplane
126 3300048919 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_7x unlabeled Metagenome Unclassified
127 3300048921 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1f N15 Metagenome Unclassified
128 3300048924 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_3e N15 Metagenome Unclassified
129 3300048925 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8x unlabeled Metagenome Unclassified
130 3300048926 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8y unlabeled Metagenome Unclassified
131 3300048927 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_4e N15 Metagenome Unclassified
132 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
133 3300049460 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWA-24-3-Co2_41_10 rhizosphere Metagenome Rhizosphere
134 3300049568 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_01 Metagenome Rhizosphere
135 3300049569 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_02 Metagenome Rhizosphere
136 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
137 3300049572 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 Metagenome Rhizosphere
138 3300049573 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_01 Metagenome Rhizosphere
139 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
140 3300049575 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_03 Metagenome Rhizosphere
141 3300049579 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 Metagenome Rhizosphere
142 3300049580 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_01 Metagenome Rhizosphere
143 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
144 3300049582 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_03 Metagenome Rhizosphere
145 3300049583 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_01 Metagenome Rhizosphere
146 3300049585 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_03 Metagenome Rhizosphere
147 3300049586 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 Metagenome Rhizosphere
148 3300049589 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_01 Metagenome Rhizosphere
149 3300049590 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_02 Metagenome Rhizosphere
150 3300049592 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_01 Metagenome Rhizosphere
151 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
152 3300049744 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_02 Metagenome Rhizosphere
153 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
154 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
155 3300049824 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_03 Metagenome Rhizosphere
156 3300050489 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-2 re-annotation Metagenome Endosphere
157 3300050491 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 re-annotation Metagenome Endosphere
158 3300050495 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-3 re-annotation Metagenome Endosphere
159 3300050496 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 re-annotation Metagenome Endosphere
160 3300050516 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-4 re-annotation Metagenome Endosphere
161 3300053087 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co3_14_51 endosphere Metagenome Endosphere
162 3300053104 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co2_41_23 endosphere Metagenome Endosphere
163 3300053116 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co1_23_6 endosphere Metagenome Endosphere
164 3300053119 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL1_25_34 endosphere Metagenome Endosphere
165 3300053121 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL2_42_16 endosphere Metagenome Endosphere
166 3300053130 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co2_44_8 endosphere Metagenome Endosphere
167 3300053140 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL1_33_12 endosphere Metagenome Endosphere
168 3300053148 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-360-CL2_44_14 endosphere Metagenome Endosphere
169 3300053157 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-86-CL2_69_17 endosphere Metagenome Endosphere
170 3300053177 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL1_23_5 endosphere Metagenome Endosphere
171 3300054114 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_03 Metagenome Rhizosphere
172 3300060353 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_01 Metagenome Rhizosphere
173 2990265787 Sphingomonas sp. SORGH_AS802 Isolate Aerial Root
174 2510917021 Novosphingobium sp. AP12 Isolate Rhizosphere
175 2582581305 Rhizorhabdus wittichii YR128 Isolate Rhizosphere
176 2599185354 Sphingomonas sp. NFR15 Isolate Rhizoplane
177 2599185359 Sphingomonas sp. NFR04 Isolate Rhizoplane
178 2643221541 Sphingomonas sp. Root50 Isolate Unclassified
179 2643221605 Sphingomonas sp. Root710 Isolate Unclassified
180 2643221606 Sphingomonas sp. Root720 Isolate Unclassified
181 2643221671 Sphingomonas sp. Root1294 Isolate Unclassified
182 2751185897 Sphingomonas panacis DCY99 Isolate Unclassified
183 2818991466 Sphingomonas trueperi 1152a Isolate Unclassified
184 2830075706 Sphingomonas jinjuensis DSM 21457 Isolate Rhizosphere
185 2879163058 Sphingomonas pokkalii L3B27 Isolate Rhizosphere
186 2885429604 Sphingomonas sp. WZY 27 Isolate Rhizosphere
187 2895880812 Frankia sp. BMG5.11 Isolate Unclassified
188 2928027323 Sphingomonas sp. 1185 Isolate Unclassified
189 2928526807 Sphingomonas trueperi 1770 Isolate Rhizosphere
190 2928968154 Sphingomonas trueperi 1075 Isolate Unclassified
191 2941489479 Lysobacter enzymogenes 2943 Isolate Rhizosphere
192 2946787523 Sphingomonas faeni W4I17 Isolate Rhizosphere
193 2984555340 Sphingomonas sp. SORGH_AS789 Isolate Aerial Root
194 2984564862 Sphingomonas sp. SORGH_AS870 Isolate Aerial Root
195 2993356040 Sphingomonas sp. SORGH_AS742 Isolate Aerial Root
196 2993693658 Sphingomonas sp. SORGH_AS438 Isolate Aerial Root
197 2995948881 Lysobacter enzymogenes B25 Isolate Unclassified
198 8054302542 Novosphingobium kaempferiae Sx8-5 Isolate Rhizosphere
199 8057101203 Sphingomonas lycopersici MMSM20 Isolate Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 91
Metatranscriptomes 0
Isolates 9

Biome Distribution

Category Percentage (%)
Aerial Root 1.67
Bulb 0
Endosphere 11.67
Nodule 0
Rhizoplane 1.67
Rhizosphere 73.33
Stem 0
Stem Tuber 0
Unclassified 0

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 SwRhRL2b_contig_2631586 2162886007 Bacteria 27217
2 JGI24751J29686_10000402 3300002459 Bacteria 13951
3 JGI24751J29686_10001189 3300002459 Bacteria 5531
4 JGI25165J46597_1000008 3300003214 Bacteria 478603
5 JGI25165J46597_1000095 3300003214 Bacteria 163883
6 JGI25153J46596_10000387 3300003215 Bacteria 30019
7 Ga0055537_1000523 3300003773 Bacteria 22459
8 Ga0065704_10070209 3300005289 Bacteria 78459
9 Ga0070658_10000535 3300005327 Bacteria 32954
10 Ga0070658_10002251 3300005327 Bacteria 16189
11 Ga0070658_10013029 3300005327 Bacteria 6673
12 Ga0070683_100046168 3300005329 Bacteria 4023
13 Ga0070670_100000964 3300005331 Bacteria 22587
14 Ga0070670_100018122 3300005331 Bacteria 6042
15 Ga0070670_100043679 3300005331 Bacteria 3852
16 Ga0070677_10000783 3300005333 Bacteria 10560
17 Ga0070666_10000089 3300005335 Bacteria 64147
18 Ga0070660_100022371 3300005339 Bacteria 4674
19 Ga0070668_100010327 3300005347 Bacteria 6931
20 Ga0070668_100012582 3300005347 Bacteria 6301
21 Ga0070669_100000024 3300005353 Bacteria 173107
22 Ga0070669_100002431 3300005353 Bacteria 13486
23 Ga0070671_100000006 3300005355 Bacteria 250635
24 Ga0070671_100001477 3300005355 Bacteria 17556
25 Ga0070671_100009082 3300005355 Bacteria 7979
26 Ga0070659_100008519 3300005366 Bacteria 7494
27 Ga0070667_100000268 3300005367 Bacteria 59162
28 Ga0070678_100013449 3300005456 Bacteria 5132
29 Ga0070681_10017612 3300005458 Bacteria 7140
30 Ga0070681_10019195 3300005458 Bacteria 6842
31 Ga0068867_100018956 3300005459 Bacteria 4898
32 Ga0068867_100023130 3300005459 Bacteria 4448
33 Ga0070679_100009277 3300005530 Bacteria 9301
34 Ga0068853_100001383 3300005539 Bacteria 17519
35 Ga0070665_100000617 3300005548 Bacteria 48760
36 Ga0070665_100000634 3300005548 Bacteria 47873
37 Ga0070665_100030514 3300005548 Bacteria 5423
38 Ga0068857_100009619 3300005577 Bacteria 8398
39 Ga0068854_100020246 3300005578 Bacteria 4498
40 Ga0068856_100039016 3300005614 Bacteria 4663
41 Ga0068852_100000658 3300005616 Bacteria 22641
42 Ga0068859_100000256 3300005617 Bacteria 52870
43 Ga0068864_100001029 3300005618 Bacteria 23342
44 Ga0068864_100004063 3300005618 Bacteria 12023
45 Ga0068864_100038034 3300005618 Bacteria 4108
46 Ga0068861_100000002 3300005719 Bacteria 111914
47 Ga0068861_100021176 3300005719 Bacteria 4673
48 Ga0068851_10010325 3300005834 Bacteria 4356
49 Ga0068863_100000014 3300005841 Bacteria 216135
50 Ga0068863_100006278 3300005841 Bacteria 11671
51 Ga0068863_100020890 3300005841 Bacteria 6253
52 Ga0068858_100000380 3300005842 Bacteria 46520
53 Ga0068858_100002936 3300005842 Bacteria 17158
54 Ga0068860_100000007 3300005843 Bacteria 429329
55 Ga0068860_100000015 3300005843 Bacteria 313639
56 Ga0068860_100010895 3300005843 Bacteria 8967
57 Ga0068862_100000310 3300005844 Bacteria 53315
58 Ga0068862_100000788 3300005844 Bacteria 31406
59 Ga0075365_10003392 3300006038 Bacteria 8196
60 Ga0075368_10000162 3300006042 Bacteria 18059
61 Ga0075364_10022197 3300006051 Bacteria 4006
62 Ga0075367_10007064 3300006178 Bacteria 5723
63 Ga0075366_10005763 3300006195 Bacteria 6727
64 Ga0097621_100000317 3300006237 Bacteria 32745
65 Ga0097621_100014442 3300006237 Bacteria 5908
66 Ga0068871_100000368 3300006358 Bacteria 31460
67 Ga0068865_100005047 3300006881 Bacteria 7989
68 Ga0097620_100000256 3300006931 Bacteria 52870
69 Ga0105245_10001498 3300009098 Bacteria 21125
70 Ga0105243_10029280 3300009148 Bacteria 4234
71 Ga0105241_10002776 3300009174 Bacteria 13114
72 Ga0105241_10010263 3300009174 Bacteria 6877
73 Ga0105248_10002861 3300009177 Bacteria 19152
74 Ga0105248_10005548 3300009177 Bacteria 13861
75 Ga0105248_10028129 3300009177 Bacteria 6262
76 Ga0105248_10065936 3300009177 Bacteria 4065
77 Ga0105237_10006934 3300009545 Bacteria 12486
78 Ga0105249_10019264 3300009553 Bacteria 6085
79 Ga0105246_10006724 3300011119 Bacteria 7031
80 Ga0157369_10008258 3300013105 Bacteria 11936
81 Ga0163163_10000016 3300014325 Bacteria 213966
82 Ga0163163_10007368 3300014325 Bacteria 9706
83 Ga0157379_10000082 3300014968 Bacteria 62515
84 Ga0157379_10008100 3300014968 Bacteria 9126
85 Ga0157379_10016574 3300014968 Bacteria 6480
86 Ga0183363_1002 3300015690 Bacteria 425040
87 Ga0213876_10001521 3300021384 Bacteria 14344
88 Ga0209233_1000006 3300025261 Bacteria 1473685
89 Ga0209233_1000052 3300025261 Bacteria 445813
90 Ga0209565_1000049 3300025263 Bacteria 224447
91 Ga0209673_1000657 3300025273 Bacteria 50750
92 Ga0209758_1000032 3300025297 Bacteria 481623
93 Ga0209758_1002127 3300025297 Bacteria 20916
94 Ga0209256_1003047 3300025299 Bacteria 12350
95 Ga0207697_10001058 3300025315 Bacteria 15200
96 Ga0207713_1006673 3300025735 Bacteria 6983
97 Ga0207705_10000002 3300025909 Bacteria 2046852
98 Ga0207705_10000004 3300025909 Bacteria 705756
99 Ga0207705_10005556 3300025909 Bacteria 9424
100 Ga0207654_10010400 3300025911 Bacteria 4736
101 Ga0207660_10021157 3300025917 Bacteria 4373
102 Ga0207657_10001084 3300025919 Bacteria 28835
103 Ga0207657_10013563 3300025919 Bacteria 7993
104 Ga0207652_10036600 3300025921 Bacteria 4149
105 Ga0207681_10000004 3300025923 Bacteria 559005
106 Ga0207694_10029020 3300025924 Bacteria 4219
107 Ga0207650_10006461 3300025925 Bacteria 7983
108 Ga0207644_10000009 3300025931 Bacteria 251643
109 Ga0207644_10002760 3300025931 Bacteria 11308
110 Ga0207711_10001835 3300025941 Bacteria 19367
111 Ga0207711_10009714 3300025941 Bacteria 8011
112 Ga0207711_10017773 3300025941 Bacteria 5908
113 Ga0207667_10055699 3300025949 Bacteria 4156
114 Ga0207668_10003103 3300025972 Bacteria 9736
115 Ga0207668_10003317 3300025972 Bacteria 9426
116 Ga0207640_10015019 3300025981 Bacteria 4473
117 Ga0207703_10000847 3300026035 Bacteria 30021
118 Ga0207703_10002484 3300026035 Bacteria 15989
119 Ga0207703_10018519 3300026035 Bacteria 5437
120 Ga0207639_10001957 3300026041 Bacteria 13829
121 Ga0207641_10000035 3300026088 Bacteria 214358
122 Ga0207641_10002739 3300026088 Bacteria 16078
123 Ga0207641_10007837 3300026088 Bacteria 8867
124 Ga0207641_10015479 3300026088 Bacteria 6250
125 Ga0207648_10005228 3300026089 Bacteria 13129
126 Ga0207676_10000532 3300026095 Bacteria 31972
127 Ga0207676_10002337 3300026095 Bacteria 13591
128 Ga0207674_10011507 3300026116 Bacteria 9939
129 Ga0207674_10011889 3300026116 Bacteria 9758
130 Ga0207674_10012634 3300026116 Bacteria 9439
131 Ga0207675_100000080 3300026118 Bacteria 74970
132 Ga0207675_100005808 3300026118 Bacteria 11793
133 Ga0207683_10009683 3300026121 Bacteria 8214
134 Ga0207683_10012613 3300026121 Bacteria 7209
135 Ga0207698_10000095 3300026142 Bacteria 57338
136 Ga0268266_10000215 3300028379 Bacteria 100801
137 Ga0268266_10000549 3300028379 Bacteria 52326
138 Ga0268266_10022265 3300028379 Bacteria 5401
139 Ga0268266_10036027 3300028379 Bacteria 4209
140 Ga0268265_10001374 3300028380 Bacteria 20668
141 Ga0268265_10021238 3300028380 Bacteria 4544
142 Ga0268264_10000002 3300028381 Bacteria 1153045
143 Ga0268264_10000014 3300028381 Bacteria 509962
144 Ga0268264_10000069 3300028381 Bacteria 270492
145 Ga0268264_10000077 3300028381 Bacteria 252597
146 Ga0268264_10008203 3300028381 Bacteria 8675
147 Ga0265318_10002338 3300028577 Bacteria 10176
148 Ga0265338_10007042 3300028800 Bacteria 14105
149 Ga0265338_10047954 3300028800 Bacteria 3893
150 Ga0265331_10008392 3300031250 Bacteria 5880
151 Ga0265327_10002933 3300031251 Bacteria 17069
152 Ga0265313_10001646 3300031595 Bacteria 20705
153 Ga0265313_10002796 3300031595 Bacteria 14720
154 Ga0307508_10000317 3300031616 Bacteria 58176
155 Ga0307413_10013449 3300031824 Bacteria 4115
156 Ga0307410_10008777 3300031852 Bacteria 5629
157 Ga0307407_10004392 3300031903 Bacteria 5979
158 Ga0307412_10001438 3300031911 Bacteria 13265
159 Ga0307411_10016154 3300032005 Bacteria 4221
160 Ga0307510_10056519 3300033180 Bacteria 4085
161 Ga0436363_1371012 3300039450 Bacteria 3408
162 Ga0451806_047960 3300041462 Bacteria 3510
163 Ga0466967_0026348 3300045976 Bacteria 4814
164 Ga0495617_002917 3300046452 Bacteria 6573
165 Ga0495627_000099 3300046453 Bacteria 107062
166 Ga0495638_0000138 3300046460 Bacteria 114823
167 Ga0495638_0001257 3300046460 Bacteria 23817
168 Ga0495650_0001568 3300046471 Bacteria 21502
169 Ga0495596_0000113 3300046500 Bacteria 55405
170 Ga0495607_0007362 3300046501 Bacteria 7622
171 Ga0495607_0010226 3300046501 Bacteria 6312
172 Ga0495607_0014677 3300046501 Bacteria 5092
173 Ga0495610_0000018 3300046512 Bacteria 355044
174 Ga0495610_0000238 3300046512 Bacteria 57907
175 Ga0495610_0000750 3300046512 Bacteria 30638
176 Ga0495610_0010905 3300046512 Bacteria 5608
177 Ga0495620_0003812 3300046515 Bacteria 8601
178 Ga0495620_0005115 3300046515 Bacteria 7344
179 Ga0495632_0000758 3300046519 Bacteria 29015
180 Ga0495643_0000746 3300046522 Bacteria 36916
181 Ga0495643_0001546 3300046522 Bacteria 20557
182 Ga0495643_0007259 3300046522 Bacteria 7168
183 Ga0495643_0007396 3300046522 Bacteria 7090
184 Ga0495609_0004697 3300046538 Bacteria 7398
185 Ga0495609_0009762 3300046538 Bacteria 4629
186 Ga0495633_0002424 3300046558 Bacteria 13180
187 Ga0495668_0000056 3300046616 Bacteria 197862
188 Ga0495625_0000054 3300046660 Bacteria 187599
189 Ga0495625_0000465 3300046660 Bacteria 60816
190 Ga0495660_0000001 3300046810 Bacteria 1431121
191 Ga0495677_0014421 3300047445 Bacteria 2877
192 Ga0495681_0000020 3300047470 Bacteria 170007
193 Ga0495681_0000777 3300047470 Bacteria 24532
194 Ga0495686_0000425 3300047472 Bacteria 66316
195 Ga0495686_0012112 3300047472 Bacteria 6054
196 Ga0495615_0000036 3300048090 Bacteria 44577
197 Ga0495626_0001158 3300048091 Bacteria 22032
198 Ga0496103_0006741 3300048906 Bacteria 6855
199 Ga0496115_0000471 3300048918 Bacteria 32135
200 Ga0496116_0000028 3300048919 Bacteria 424086
201 Ga0496116_0001423 3300048919 Bacteria 26893
202 Ga0496116_0013404 3300048919 Bacteria 6612
203 Ga0496118_0002426 3300048921 Bacteria 25124
204 Ga0496121_0000119 3300048924 Bacteria 175072
205 Ga0496121_0000176 3300048924 Bacteria 142585
206 Ga0496121_0000206 3300048924 Bacteria 130071
207 Ga0496121_0000931 3300048924 Bacteria 52909
208 Ga0496121_0006257 3300048924 Bacteria 14897
209 Ga0496122_0000112 3300048925 Bacteria 187099
210 Ga0496122_0001127 3300048925 Bacteria 46009
211 Ga0496122_0005190 3300048925 Bacteria 15657
212 Ga0496123_0000705 3300048926 Bacteria 54647
213 Ga0496123_0001207 3300048926 Bacteria 37751
214 Ga0496123_0001612 3300048926 Bacteria 30490
215 Ga0496123_0015859 3300048926 Bacteria 6153
216 Ga0496124_0003875 3300048927 Bacteria 17887
217 Ga0496124_0004898 3300048927 Bacteria 15390
218 Ga0496124_0007157 3300048927 Bacteria 11936
219 Ga0496124_0008512 3300048927 Bacteria 10713
220 Ga0496126_0000079 3300048929 Bacteria 222463
221 Ga0495682_0000028 3300049460 Bacteria 142262
222 Ga0501031_0001169 3300049568 Bacteria 15964
223 Ga0501032_0001223 3300049569 Bacteria 20578
224 Ga0501034_0047259 3300049571 Bacteria 4347
225 Ga0501036_0009410 3300049572 Bacteria 8036
226 Ga0501037_0004054 3300049573 Bacteria 10623
227 Ga0501038_0003905 3300049574 Bacteria 13864
228 Ga0501039_0001739 3300049575 Bacteria 16054
229 Ga0501043_0008229 3300049579 Bacteria 8219
230 Ga0501043_0021941 3300049579 Bacteria 5007
231 Ga0501046_0003473 3300049580 Bacteria 14464
232 Ga0501047_0001707 3300049581 Bacteria 21355
233 Ga0501047_0008120 3300049581 Bacteria 9906
234 Ga0501047_0008577 3300049581 Bacteria 9645
235 Ga0501047_0008762 3300049581 Bacteria 9546
236 Ga0501047_0009916 3300049581 Bacteria 9006
237 Ga0501048_0007904 3300049582 Bacteria 8055
238 Ga0501067_0000319 3300049583 Bacteria 26322
239 Ga0501069_0000562 3300049585 Bacteria 17112
240 Ga0501070_0002055 3300049586 Bacteria 17675
241 Ga0501070_0041249 3300049586 Bacteria 3845
242 Ga0501073_0013403 3300049589 Bacteria 5963
243 Ga0501074_0014922 3300049590 Bacteria 5652
244 Ga0501076_0026738 3300049592 Bacteria 4473
245 Ga0501080_0017911 3300049742 Bacteria 6556
246 Ga0501083_0001247 3300049744 Bacteria 17279
247 Ga0501035_0027887 3300049822 Bacteria 5159
248 Ga0501044_0000573 3300049823 Bacteria 44683
249 Ga0501044_0010214 3300049823 Bacteria 10199
250 Ga0501044_0014690 3300049823 Bacteria 8443
251 Ga0501044_0016055 3300049823 Bacteria 8051
252 Ga0501045_0003348 3300049824 Bacteria 10971
253 nmdc:mga03683_233_c1 3300050489 Bacteria 17402
254 nmdc:mga00v17_17815_c1 3300050491 Bacteria 4028
255 nmdc:mga04h51_3410_c1 3300050495 Bacteria 3862
256 nmdc:mga04h51_77_c1 3300050495 Bacteria 31782
257 nmdc:mga07m45_22_c1 3300050496 Bacteria 117399
258 nmdc:mga0sz30_152_c1 3300050516 Bacteria 25652
259 Ga0500643_000525 3300053087 Bacteria 26988
260 Ga0500643_001244 3300053087 Bacteria 15098
261 Ga0500556_0000014 3300053104 Bacteria 232989
262 Ga0500556_0000952 3300053104 Bacteria 15586
263 Ga0500592_000109 3300053116 Bacteria 17690
264 Ga0500595_001558 3300053119 Bacteria 12133
265 Ga0500595_003379 3300053119 Bacteria 7475
266 Ga0500607_000573 3300053121 Bacteria 35378
267 Ga0500642_0000001 3300053130 Bacteria 1468402
268 Ga0500573_0000028 3300053140 Bacteria 142610
269 Ga0500590_001357 3300053148 Bacteria 9973
270 Ga0500624_000087 3300053157 Bacteria 47425
271 Ga0500636_0000969 3300053177 Bacteria 15437
272 Ga0501084_0009524 3300054114 Bacteria 8038
273 Ga0501082_0001167 3300060353 Bacteria 23122
274 2990268667 2990265787 Bacteria 3943888
275 2511129042 2510917021 Bacteria 5705459
276 2585261281 2582581305 Bacteria 4895574
277 2600201464 2599185354 Bacteria 4398675
278 2600228330 2599185359 Bacteria 4772316
279 2643728066 2643221541 Bacteria 5498788
280 2644039200 2643221605 Bacteria 4772303
281 2644042984 2643221606 Bacteria 5588032
282 2644395585 2643221671 Bacteria 5496681
283 2753763469 2751185897 Bacteria 5322941
284 2819716074 2818991466 Bacteria 4748179
285 2830076891 2830075706 Bacteria 3855215
286 2879163339 2879163058 Bacteria 4223965
287 2885431553 2885429604 Bacteria 3642894
288 2895882133 2895880812 Bacteria 11255272
289 2928030372 2928027323 Bacteria 4382488
290 2928528134 2928526807 Bacteria 4760224
291 2928971359 2928968154 Bacteria 4633371
292 2941491395 2941489479 Bacteria 6313767
293 2946789661 2946787523 Bacteria 4366789
294 2984555773 2984555340 Bacteria 4247089
295 2984566117 2984564862 Bacteria 4339992
296 2993357129 2993356040 Bacteria 4247105
297 2993694627 2993693658 Bacteria 4040749
298 2995953577 2995948881 Bacteria 6358104
299 8054305845 8054302542 Bacteria 5698134
300 8057103413 8057101203 Bacteria 5034064
301 SwRhRL2b_contig_2631586
302 JGI24751J29686_10000402
303 JGI24751J29686_10001189
304 JGI25165J46597_1000008
305 JGI25165J46597_1000095
306 JGI25153J46596_10000387
307 Ga0055537_1000523
308 Ga0065704_10070209
309 Ga0070658_10000535
310 Ga0070658_10002251
311 Ga0070658_10013029
312 Ga0070683_100046168
313 Ga0070670_100000964
314 Ga0070670_100018122
315 Ga0070670_100043679
316 Ga0070677_10000783
317 Ga0070666_10000089
318 Ga0070660_100022371
319 Ga0070668_100010327
320 Ga0070668_100012582
321 Ga0070669_100000024
322 Ga0070669_100002431
323 Ga0070671_100000006
324 Ga0070671_100001477
325 Ga0070671_100009082
326 Ga0070659_100008519
327 Ga0070667_100000268
328 Ga0070678_100013449
329 Ga0070681_10017612
330 Ga0070681_10019195
331 Ga0068867_100018956
332 Ga0068867_100023130
333 Ga0070679_100009277
334 Ga0068853_100001383
335 Ga0070665_100000617
336 Ga0070665_100000634
337 Ga0070665_100030514
338 Ga0068857_100009619
339 Ga0068854_100020246
340 Ga0068856_100039016
341 Ga0068852_100000658
342 Ga0068859_100000256
343 Ga0068864_100001029
344 Ga0068864_100004063
345 Ga0068864_100038034
346 Ga0068861_100000002
347 Ga0068861_100021176
348 Ga0068851_10010325
349 Ga0068863_100000014
350 Ga0068863_100006278
351 Ga0068863_100020890
352 Ga0068858_100000380
353 Ga0068858_100002936
354 Ga0068860_100000007
355 Ga0068860_100000015
356 Ga0068860_100010895
357 Ga0068862_100000310
358 Ga0068862_100000788
359 Ga0075365_10003392
360 Ga0075368_10000162
361 Ga0075364_10022197
362 Ga0075367_10007064
363 Ga0075366_10005763
364 Ga0097621_100000317
365 Ga0097621_100014442
366 Ga0068871_100000368
367 Ga0068865_100005047
368 Ga0097620_100000256
369 Ga0105245_10001498
370 Ga0105243_10029280
371 Ga0105241_10002776
372 Ga0105241_10010263
373 Ga0105248_10002861
374 Ga0105248_10005548
375 Ga0105248_10028129
376 Ga0105248_10065936
377 Ga0105237_10006934
378 Ga0105249_10019264
379 Ga0105246_10006724
380 Ga0157369_10008258
381 Ga0163163_10000016
382 Ga0163163_10007368
383 Ga0157379_10000082
384 Ga0157379_10008100
385 Ga0157379_10016574
386 Ga0183363_1002
387 Ga0213876_10001521
388 Ga0209233_1000006
389 Ga0209233_1000052
390 Ga0209565_1000049
391 Ga0209673_1000657
392 Ga0209758_1000032
393 Ga0209758_1002127
394 Ga0209256_1003047
395 Ga0207697_10001058
396 Ga0207713_1006673
397 Ga0207705_10000002
398 Ga0207705_10000004
399 Ga0207705_10005556
400 Ga0207654_10010400
401 Ga0207660_10021157
402 Ga0207657_10001084
403 Ga0207657_10013563
404 Ga0207652_10036600
405 Ga0207681_10000004
406 Ga0207694_10029020
407 Ga0207650_10006461
408 Ga0207644_10000009
409 Ga0207644_10002760
410 Ga0207711_10001835
411 Ga0207711_10009714
412 Ga0207711_10017773
413 Ga0207667_10055699
414 Ga0207668_10003103
415 Ga0207668_10003317
416 Ga0207640_10015019
417 Ga0207703_10000847
418 Ga0207703_10002484
419 Ga0207703_10018519
420 Ga0207639_10001957
421 Ga0207641_10000035
422 Ga0207641_10002739
423 Ga0207641_10007837
424 Ga0207641_10015479
425 Ga0207648_10005228
426 Ga0207676_10000532
427 Ga0207676_10002337
428 Ga0207674_10011507
429 Ga0207674_10011889
430 Ga0207674_10012634
431 Ga0207675_100000080
432 Ga0207675_100005808
433 Ga0207683_10009683
434 Ga0207683_10012613
435 Ga0207698_10000095
436 Ga0268266_10000215
437 Ga0268266_10000549
438 Ga0268266_10022265
439 Ga0268266_10036027
440 Ga0268265_10001374
441 Ga0268265_10021238
442 Ga0268264_10000002
443 Ga0268264_10000014
444 Ga0268264_10000069
445 Ga0268264_10000077
446 Ga0268264_10008203
447 Ga0265318_10002338
448 Ga0265338_10007042
449 Ga0265338_10047954
450 Ga0265331_10008392
451 Ga0265327_10002933
452 Ga0265313_10001646
453 Ga0265313_10002796
454 Ga0307508_10000317
455 Ga0307413_10013449
456 Ga0307410_10008777
457 Ga0307407_10004392
458 Ga0307412_10001438
459 Ga0307411_10016154
460 Ga0307510_10056519
461 Ga0436363_1371012
462 Ga0451806_047960
463 Ga0466967_0026348
464 Ga0495617_002917
465 Ga0495627_000099
466 Ga0495638_0000138
467 Ga0495638_0001257
468 Ga0495650_0001568
469 Ga0495596_0000113
470 Ga0495607_0007362
471 Ga0495607_0010226
472 Ga0495607_0014677
473 Ga0495610_0000018
474 Ga0495610_0000238
475 Ga0495610_0000750
476 Ga0495610_0010905
477 Ga0495620_0003812
478 Ga0495620_0005115
479 Ga0495632_0000758
480 Ga0495643_0000746
481 Ga0495643_0001546
482 Ga0495643_0007259
483 Ga0495643_0007396
484 Ga0495609_0004697
485 Ga0495609_0009762
486 Ga0495633_0002424
487 Ga0495668_0000056
488 Ga0495625_0000054
489 Ga0495625_0000465
490 Ga0495660_0000001
491 Ga0495677_0014421
492 Ga0495681_0000020
493 Ga0495681_0000777
494 Ga0495686_0000425
495 Ga0495686_0012112
496 Ga0495615_0000036
497 Ga0495626_0001158
498 Ga0496103_0006741
499 Ga0496115_0000471
500 Ga0496116_0000028
501 Ga0496116_0001423
502 Ga0496116_0013404
503 Ga0496118_0002426
504 Ga0496121_0000119
505 Ga0496121_0000176
506 Ga0496121_0000206
507 Ga0496121_0000931
508 Ga0496121_0006257
509 Ga0496122_0000112
510 Ga0496122_0001127
511 Ga0496122_0005190
512 Ga0496123_0000705
513 Ga0496123_0001207
514 Ga0496123_0001612
515 Ga0496123_0015859
516 Ga0496124_0003875
517 Ga0496124_0004898
518 Ga0496124_0007157
519 Ga0496124_0008512
520 Ga0496126_0000079
521 Ga0495682_0000028
522 Ga0501031_0001169
523 Ga0501032_0001223
524 Ga0501034_0047259
525 Ga0501036_0009410
526 Ga0501037_0004054
527 Ga0501038_0003905
528 Ga0501039_0001739
529 Ga0501043_0008229
530 Ga0501043_0021941
531 Ga0501046_0003473
532 Ga0501047_0001707
533 Ga0501047_0008120
534 Ga0501047_0008577
535 Ga0501047_0008762
536 Ga0501047_0009916
537 Ga0501048_0007904
538 Ga0501067_0000319
539 Ga0501069_0000562
540 Ga0501070_0002055
541 Ga0501070_0041249
542 Ga0501073_0013403
543 Ga0501074_0014922
544 Ga0501076_0026738
545 Ga0501080_0017911
546 Ga0501083_0001247
547 Ga0501035_0027887
548 Ga0501044_0000573
549 Ga0501044_0010214
550 Ga0501044_0014690
551 Ga0501044_0016055
552 Ga0501045_0003348
553 nmdc:mga03683_233_c1
554 nmdc:mga00v17_17815_c1
555 nmdc:mga04h51_3410_c1
556 nmdc:mga04h51_77_c1
557 nmdc:mga07m45_22_c1
558 nmdc:mga0sz30_152_c1
559 Ga0500643_000525
560 Ga0500643_001244
561 Ga0500556_0000014
562 Ga0500556_0000952
563 Ga0500592_000109
564 Ga0500595_001558
565 Ga0500595_003379
566 Ga0500607_000573
567 Ga0500642_0000001
568 Ga0500573_0000028
569 Ga0500590_001357
570 Ga0500624_000087
571 Ga0500636_0000969
572 Ga0501084_0009524
573 Ga0501082_0001167
574 2990268667
575 2511129042
576 2585261281
577 2600201464
578 2600228330
579 2643728066
580 2644039200
581 2644042984
582 2644395585
583 2753763469
584 2819716074
585 2830076891
586 2879163339
587 2885431553
588 2895882133
589 2928030372
590 2928528134
591 2928971359
592 2941491395
593 2946789661
594 2984555773
595 2984566117
596 2993357129
597 2993694627
598 2995953577
599 8054305845
600 8057103413

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF00873

ACR_tran

AcrB/AcrD/AcrF family

1

1043

0.99

PF03176

MMPL

MMPL family

810

1054

0.84

PF02355

SecD_SecF

Protein export membrane protein

318

497

0.81

PF03176

MMPL

MMPL family

326

529

0.79

Structural Annotation

Top 5 Hits

ID Description Score Start End
8f4r-assembly1.cif.gz_C gentamicin bound aminoglycoside efflux pump acrd 0.9471 1 991
4u8y-assembly1.cif.gz_C coupling of remote alternating-access transport mechanisms for protons and substrates in the multidrug efflux pump acrb 0.9461 1 990
6zof-assembly1.cif.gz_C fusidic acid binding to the tm7/tm8 groove of acrb-f380a t protomer 0.9451 1 990
6iok-assembly1.cif.gz_F cryo-em structure of multidrug efflux pump mexab-oprm (0 degree state) 0.9447 1 990
6zo5-assembly1.cif.gz_C fusidic acid binding to the tm1/tm2 groove of acrb-g619p_g621p 0.944 1 990
ID Description Score Start End Superfamily
af_P24181_41_133_3.30.70.1430 Alpha Beta;2-Layer Sandwich;Alpha-Beta Plaits;Multidrug efflux transporter AcrB pore domain 0.9913 42 133 3.30.70.1430
3aobB02 Alpha Beta;2-Layer Sandwich;Alpha-Beta Plaits;Multidrug efflux transporter AcrB pore domain 0.9779 38 132 3.30.70.1430
4mt1A02 Alpha Beta;2-Layer Sandwich;Alpha-Beta Plaits;Multidrug efflux transporter AcrB pore domain 0.9756 38 129 3.30.70.1430
af_P24181_41_133_3.30.70.1430 Alpha Beta;2-Layer Sandwich;Alpha-Beta Plaits;Multidrug efflux transporter AcrB pore domain 0.9703 42 133 3.30.70.1430
af_P24177_569_664_3.30.70.1430 Alpha Beta;2-Layer Sandwich;Alpha-Beta Plaits;Multidrug efflux transporter AcrB pore domain 0.9665 558 653 3.30.70.1430
ID Description Score Start End GO Terms
AF-A0A5M5BVS6-F1-model_v4 Multidrug efflux RND transporter permease subunit 0.9761 855 989 GO:0005886
GO:0042910
AF-A0A379UTL3-F1-model_v4 Efflux pump 0.9628 149 351 GO:0005886
GO:0042910
AF-A0A352E810-F1-model_v4 deleted 0.9541 820 990
AF-A0A3S2B7M3-F1-model_v4 Hydrophobe/amphiphile efflux-1 family RND transporter 0.9465 1 490 GO:0005886
GO:0042910
AF-A0A1B6NVI7-F1-model_v4 HAE1 efflux family protein 0.9428 656 937 GO:0005886
GO:0042910

Map