F396259

General Info

Members Datasets Scaffolds Average Seq Length
302 175 604 183

Family's Representative Sequence

Representative Sequence 3300002987|JGI25159J45721_1000835|JGI25159J45721_10008355
Length 190
Sequence MARVIAEREDVIPMLAEVFRTYGFEGASLARITEGTRLGKGSIYHFFPGGKEEMAAAVLSQIDDWFRQQVFDPLRQGRNGAEAERGIAAMFDQVERYFLAGRKVCLVGVFALGNERDRFADAVRDYFAVWIDALEAALLRAGRRKADARALAEEAVGGIQGALVLSRAFDRTEMFTDTLKRLRSRLLPAQ

Samples

Sample ID Description Type Environment
1 3300002987 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mLB Metagenome Endosphere
2 3300002738 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mTSA Metagenome Unclassified
3 3300002739 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mTSA Metagenome Endosphere
4 3300002741 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mCL Metagenome Unclassified
5 3300002774 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mTSA Metagenome Endosphere
6 3300003215 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF Metagenome Endosphere
7 3300003322 Sugarcane root Sample L2 Metagenome Unclassified
8 3300003323 Sugarcane root Sample H1 Metagenome Unclassified
9 3300003354 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMS Metagenome Endosphere
10 3300003374 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMF Metagenome Endosphere
11 3300003771 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMF_r2 Metagenome Endosphere
12 3300003773 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mTSA_r2 Metagenome Endosphere
13 3300003775 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mCL_r2 Metagenome Endosphere
14 3300003784 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mLB_r2 Metagenome Endosphere
15 3300003790 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMS_r2 Metagenome Endosphere
16 3300004625 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mMF_r2 Metagenome Endosphere
17 3300005262 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMF (version 2) (version 3) Metagenome Endosphere
18 3300005327 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG Metagenome Rhizosphere
19 3300005329 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG Metagenome Rhizosphere
20 3300005339 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG Metagenome Rhizosphere
21 3300005344 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG Metagenome Rhizosphere
22 3300005457 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG Metagenome Rhizosphere
23 3300005539 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 Metagenome Rhizosphere
24 3300005543 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG Metagenome Rhizosphere
25 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
26 3300005564 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG Metagenome Rhizosphere
27 3300005577 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 Metagenome Rhizosphere
28 3300005578 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 Metagenome Rhizosphere
29 3300005616 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 Metagenome Rhizosphere
30 3300005937 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1 Metagenome Rhizosphere
31 3300006358 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 Metagenome Rhizosphere
32 3300006946 Root nodule microbial communities of legume samples collected from California, USA - Medicago truncatula BG Metagenome Nodule
33 3300009036 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-4 metaG Metagenome Rhizosphere
34 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
35 3300009098 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG Metagenome Rhizosphere
36 3300009148 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG Metagenome Rhizosphere
37 3300009174 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG Metagenome Rhizosphere
38 3300009176 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG Metagenome Rhizosphere
39 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
40 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
41 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
42 3300013296 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG Metagenome Rhizosphere
43 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
44 3300015261 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-104_1 MetaG Metagenome Rhizosphere
45 3300015265 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-103_1 MetaG Metagenome Rhizosphere
46 3300021361 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2 Metagenome Rhizosphere
47 3300025208 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mTSA (SPAdes) (version 2) Metagenome Endosphere
48 3300025233 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mTSA (SPAdes) (version 2) Metagenome Endosphere
49 3300025245 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mTSA (SPAdes) (version 3) Metagenome Endosphere
50 3300025246 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mTSA (SPAdes) (version 2) Metagenome Unclassified
51 3300025250 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mCL (SPAdes) (version 2) Metagenome Unclassified
52 3300025254 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mMF_r2 (SPAdes) (version 2) Metagenome Endosphere
53 3300025256 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mMS (SPAdes) (version 2) Metagenome Unclassified
54 3300025263 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mTSA_r2 (SPAdes) (version 3) Metagenome Endosphere
55 3300025273 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMS_r2 (SPAdes) (version 3) Metagenome Endosphere
56 3300025284 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mLB (SPAdes) (version 2) Metagenome Endosphere
57 3300025291 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mLB_r2 (SPAdes) (version 3) Metagenome Endosphere
58 3300025295 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMF_r2 (SPAdes) (version 3) Metagenome Endosphere
59 3300025297 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF (SPAdes) (version 2) Metagenome Endosphere
60 3300025299 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mCL_r2 (SPAdes) (version 3) Metagenome Endosphere
61 3300025302 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMS (SPAdes) (version 2) Metagenome Endosphere
62 3300025909 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
63 3300025911 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
64 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
65 3300025914 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
66 3300025919 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
67 3300025920 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
68 3300025924 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
69 3300025932 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
70 3300025933 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
71 3300025934 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
72 3300025935 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
73 3300025945 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
74 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
75 3300025981 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 (SPAdes) (version 2) Metagenome Rhizosphere
76 3300026041 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes) (version 2) Metagenome Rhizosphere
77 3300026142 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes) (version 2) Metagenome Rhizosphere
78 3300027111 Root nodule microbial communities of legume samples collected from California, USA - Medicago truncatula BG (SPAdes) (version 2) Metagenome Nodule
79 3300028794 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM Metagenome Unclassified
80 3300030744 Rhizosphere soil microbial communities in a healthy wheat plant from a non-infected Wellcamp field in Toowoomba, Australia - sample 7 Metagenome Rhizosphere
81 3300031711 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-26 metaG Metagenome Rhizosphere
82 3300037312 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_B SG_2 Metagenome Rhizosphere
83 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
84 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
85 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
86 3300039447 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2 v2 Metagenome Rhizosphere
87 3300046452 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-351-Co3_11_46 rhizosphere Metagenome Rhizosphere
88 3300046453 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co3_8_57 rhizosphere Metagenome Rhizosphere
89 3300046457 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-133-Co2_50_25 rhizosphere Metagenome Rhizosphere
90 3300046460 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co3_31_37 rhizosphere Metagenome Rhizosphere
91 3300046471 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co3_9_34 rhizosphere Metagenome Rhizosphere
92 3300046474 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co1_31_6 rhizosphere Metagenome Rhizosphere
93 3300046475 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-845-CL1_31_22 rhizosphere Metagenome Rhizosphere
94 3300046491 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co2_41_23 rhizosphere Metagenome Rhizosphere
95 3300046492 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co3_21_57 rhizosphere Metagenome Rhizosphere
96 3300046501 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co3_27_41 rhizosphere Metagenome Rhizosphere
97 3300046506 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co1_30_3 rhizosphere Metagenome Rhizosphere
98 3300046507 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co2_62_14 rhizosphere Metagenome Rhizosphere
99 3300046512 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co2_50_17 rhizosphere Metagenome Rhizosphere
100 3300046513 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-351-Co2_42_17 rhizosphere Metagenome Rhizosphere
101 3300046520 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co2_47_23 rhizosphere Metagenome Rhizosphere
102 3300046522 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 rhizosphere Metagenome Rhizosphere
103 3300046523 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co3_28_42 rhizosphere Metagenome Rhizosphere
104 3300046524 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co1_12_9 rhizosphere Metagenome Rhizosphere
105 3300046530 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-866-Co1_10_5 rhizosphere Metagenome Rhizosphere
106 3300046538 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co1_12_7 rhizosphere Metagenome Rhizosphere
107 3300046542 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co2_52_27 rhizosphere Metagenome Rhizosphere
108 3300046557 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL1_25_34 rhizosphere Metagenome Rhizosphere
109 3300046558 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co3_6_53 rhizosphere Metagenome Rhizosphere
110 3300046615 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-866-Co3_27_48 rhizosphere Metagenome Rhizosphere
111 3300046616 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co1_14_4 rhizosphere Metagenome Rhizosphere
112 3300046648 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co3_15_40 rhizosphere Metagenome Rhizosphere
113 3300046660 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co1_32_7 rhizosphere Metagenome Rhizosphere
114 3300046664 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co1_5_9 rhizosphere Metagenome Rhizosphere
115 3300046665 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co3_16_51 rhizosphere Metagenome Rhizosphere
116 3300046684 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co2_44_8 rhizosphere Metagenome Rhizosphere
117 3300046691 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co3_14_51 rhizosphere Metagenome Rhizosphere
118 3300046692 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co1_37_5 rhizosphere Metagenome Rhizosphere
119 3300046694 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 rhizosphere Metagenome Rhizosphere
120 3300046810 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co2_51_17 rhizosphere Metagenome Rhizosphere
121 3300047318 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co1_6_4 rhizosphere Metagenome Rhizosphere
122 3300047320 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co2_68_28 rhizosphere Metagenome Rhizosphere
123 3300047323 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWA-24-3-Co3_23_35 rhizosphere Metagenome Rhizosphere
124 3300047443 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co3_24_32 rhizosphere Metagenome Rhizosphere
125 3300047445 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co1_16_8 rhizosphere Metagenome Rhizosphere
126 3300047447 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co1_7_5 rhizosphere Metagenome Rhizosphere
127 3300047469 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co3_31_39 rhizosphere Metagenome Rhizosphere
128 3300047470 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWA-24-3-Co1_3_5 rhizosphere Metagenome Rhizosphere
129 3300047472 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co2_54_22 rhizosphere Metagenome Rhizosphere
130 3300048903 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7v unlabeled Metagenome Rhizoplane
131 3300048906 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1d N15 Metagenome Rhizoplane
132 3300048910 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3d N15 Metagenome Rhizoplane
133 3300048917 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6c N15 Metagenome Rhizoplane
134 3300048919 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_7x unlabeled Metagenome Unclassified
135 3300048927 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_4e N15 Metagenome Unclassified
136 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
137 3300049459 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co2_62_24 rhizosphere Metagenome Rhizosphere
138 3300049460 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWA-24-3-Co2_41_10 rhizosphere Metagenome Rhizosphere
139 3300049766 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - E14_B_4_drought Metagenome Rhizosphere
140 3300053118 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co3_13_34 endosphere Metagenome Endosphere
141 3300053125 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL1_28_5 endosphere Metagenome Endosphere
142 3300053145 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL3_84_27 endosphere Metagenome Endosphere
143 2521172590 Herbaspirillum sp. GW103 Isolate Rhizosphere
144 2599185352 Sinorhizobium sp. NFACC03 Isolate Rhizoplane
145 2643221638 Duganella sp. Root336D2 Isolate Unclassified
146 2643221645 Massilia sp. Root351 Isolate Unclassified
147 2643221664 Massilia sp. Root418 Isolate Unclassified
148 2643221723 Ensifer sp. Root278 Isolate Unclassified
149 2738541280 Massilia sp. GV090 Isolate Unclassified
150 2738541297 Duganella sp. GV083 Isolate Unclassified
151 2738541300 Massilia sp. GV016 Isolate Unclassified
152 2738541357 Duganella sp. GV053 Isolate Unclassified
153 2738543003 Duganella sp. GV066 Isolate Unclassified
154 2738543018 Massilia sp. GV045 Isolate Unclassified
155 2738543026 Duganella sp. GV089 Isolate Unclassified
156 2738543029 Duganella sp. GV039 Isolate Unclassified
157 2738543030 Massilia sp. GV097 Isolate Unclassified
158 2818991449 Herbaspirillum huttiense 1147 Isolate Unclassified
159 2842711865 Duganella sp. R-73148 Isolate Unclassified
160 2857558681 Duganella sp. R-74565 Isolate Unclassified
161 2857564685 Duganella sp. R-74599 Isolate Unclassified
162 2904424332 Duganella sp. 1411 Isolate Rhizosphere
163 2904439833 Herbaspirillum sp. 1589 Isolate Rhizosphere
164 2904530477 Herbaspirillum huttiense 611 Isolate Unclassified
165 2904584206 Herbaspirillum sp. 1050 Isolate Unclassified
166 2904589729 Herbaspirillum sp. 1130 Isolate Unclassified
167 2904601388 Herbaspirillum sp. 1273 Isolate Rhizosphere
168 2919079590 Herbaspirillum sp. 1173 Isolate Unclassified
169 2919476304 Duganella sp. 3397 Isolate Unclassified
170 2928027323 Sphingomonas sp. 1185 Isolate Unclassified
171 2928130867 Herbaspirillum seropedicae 1977 Isolate Unclassified
172 2941499720 Ensifer sp. 4252 Isolate Rhizosphere
173 2984555340 Sphingomonas sp. SORGH_AS789 Isolate Aerial Root
174 2984564862 Sphingomonas sp. SORGH_AS870 Isolate Aerial Root
175 2993356040 Sphingomonas sp. SORGH_AS742 Isolate Aerial Root

Type Distribution

Type Percentage (%)
Metagenomes 89.07
Metatranscriptomes 0
Isolates 10.93

Biome Distribution

Category Percentage (%)
Aerial Root 0.99
Bulb 0
Endosphere 11.92
Nodule 0.66
Rhizoplane 1.66
Rhizosphere 72.19
Stem 0
Stem Tuber 0
Unclassified 0

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 JGI25159J45721_1000835 3300002987 Bacteria 13430
2 JGI25154J39366_1001662 3300002738 Bacteria 7383
3 JGI25158J39367_1000356 3300002739 Bacteria 9888
4 JGI25157J39369_1001993 3300002741 Bacteria 5980
5 JGI25150J39212_1008893 3300002774 Bacteria 1940
6 JGI25153J46596_10049942 3300003215 Bacteria 1210
7 rootL2_10008814 3300003322 Bacteria 15810
8 rootH1_10233011 3300003323 Bacteria 1112
9 JGI25160J50197_1000020 3300003354 Bacteria 232739
10 JGI25161J50226_1000544 3300003374 Bacteria 16086
11 Ga0055526_1000016 3300003771 Bacteria 213710
12 Ga0055526_1000080 3300003771 Bacteria 87500
13 Ga0055526_1000467 3300003771 Bacteria 32128
14 Ga0055526_1000584 3300003771 Bacteria 28672
15 Ga0055537_1000467 3300003773 Bacteria 25506
16 Ga0055524_1003293 3300003775 Bacteria 7904
17 Ga0055534_1000009 3300003784 Bacteria 210256
18 Ga0055528_1000012 3300003790 Bacteria 182704
19 Ga0055543_1000163 3300004625 Bacteria 55480
20 Ga0055543_1012868 3300004625 Bacteria 1669
21 Ga0065165_1000013 3300005262 Bacteria 301887
22 Ga0065165_1000051 3300005262 Bacteria 194844
23 Ga0070658_10042323 3300005327 Bacteria 3678
24 Ga0070683_101143804 3300005329 Bacteria 748
25 Ga0070660_100212366 3300005339 Bacteria 1571
26 Ga0070661_100119771 3300005344 Bacteria 1971
27 Ga0070661_100155451 3300005344 Bacteria 1730
28 Ga0070662_100251884 3300005457 Bacteria 1420
29 Ga0068853_100739773 3300005539 Bacteria 939
30 Ga0070672_100823823 3300005543 Bacteria 817
31 Ga0068855_100000645 3300005563 Bacteria 42677
32 Ga0068855_100089668 3300005563 Bacteria 3550
33 Ga0068855_100104340 3300005563 Bacteria 3261
34 Ga0070664_100181518 3300005564 Bacteria 1870
35 Ga0068857_100488662 3300005577 Bacteria 1154
36 Ga0068854_100006918 3300005578 Bacteria 7234
37 Ga0068852_100369146 3300005616 Bacteria 1405
38 Ga0068852_101150596 3300005616 Bacteria 797
39 Ga0081455_10284312 3300005937 Bacteria 1194
40 Ga0068871_100291119 3300006358 Bacteria 1431
41 Ga0079104_1047130 3300006946 Bacteria 976
42 Ga0105244_10019663 3300009036 Bacteria 3763
43 Ga0105240_10021185 3300009093 Bacteria 8652
44 Ga0105245_10067970 3300009098 Bacteria 3228
45 Ga0105243_10016096 3300009148 Bacteria 5659
46 Ga0105241_10199578 3300009174 Bacteria 1670
47 Ga0105242_10016051 3300009176 Bacteria 5817
48 Ga0105237_10002535 3300009545 Bacteria 22609
49 Ga0105238_10000213 3300009551 Bacteria 64398
50 Ga0105238_10027489 3300009551 Bacteria 5798
51 Ga0105238_10685677 3300009551 Bacteria 1036
52 Ga0105239_10010163 3300010375 Bacteria 10546
53 Ga0105239_11024967 3300010375 Bacteria 949
54 Ga0105239_11169860 3300010375 Bacteria 886
55 Ga0157374_10228655 3300013296 Bacteria 1827
56 Ga0157372_10073046 3300013307 Bacteria 3866
57 Ga0182006_1000023 3300015261 Bacteria 275031
58 Ga0182006_1001685 3300015261 Bacteria 12930
59 Ga0182005_1000154 3300015265 Bacteria 48125
60 Ga0213872_10000020 3300021361 Bacteria 159607
61 Ga0213872_10137566 3300021361 Bacteria 1073
62 Ga0209436_100498 3300025208 Bacteria 17278
63 Ga0209437_104390 3300025233 Bacteria 2490
64 Ga0207425_1009705 3300025245 Bacteria 2381
65 Ga0209646_1000072 3300025246 Bacteria 224823
66 Ga0209646_1007397 3300025246 Bacteria 1797
67 Ga0209026_1000013 3300025250 Bacteria 415633
68 Ga0209148_1023196 3300025254 Bacteria 990
69 Ga0209759_1000241 3300025256 Bacteria 81497
70 Ga0209565_1000015 3300025263 Bacteria 494091
71 Ga0209673_1000017 3300025273 Bacteria 492994
72 Ga0209130_1000034 3300025284 Bacteria 302439
73 Ga0209130_1000063 3300025284 Bacteria 198142
74 Ga0209675_1000012 3300025291 Bacteria 494061
75 Ga0209564_1000002 3300025295 Bacteria 1636803
76 Ga0209564_1000007 3300025295 Bacteria 1028582
77 Ga0209564_1000016 3300025295 Bacteria 613131
78 Ga0209758_1001543 3300025297 Bacteria 26465
79 Ga0209256_1000346 3300025299 Bacteria 75456
80 Ga0207426_1000006 3300025302 Bacteria 1025969
81 Ga0207705_10020222 3300025909 Bacteria 4761
82 Ga0207705_10238697 3300025909 Bacteria 1384
83 Ga0207654_10020071 3300025911 Bacteria 3537
84 Ga0207695_10002101 3300025913 Bacteria 30256
85 Ga0207671_10034125 3300025914 Bacteria 3782
86 Ga0207657_10068638 3300025919 Bacteria 3011
87 Ga0207649_10082582 3300025920 Bacteria 2083
88 Ga0207649_10254891 3300025920 Bacteria 1265
89 Ga0207694_10000171 3300025924 Bacteria 66876
90 Ga0207694_10356993 3300025924 Bacteria 1211
91 Ga0207690_10132787 3300025932 Bacteria 1824
92 Ga0207706_10057424 3300025933 Bacteria 3429
93 Ga0207686_10044657 3300025934 Bacteria 2722
94 Ga0207709_10035044 3300025935 Bacteria 2964
95 Ga0207709_11295407 3300025935 Bacteria 602
96 Ga0207679_10068013 3300025945 Bacteria 2674
97 Ga0207667_10000191 3300025949 Bacteria 89641
98 Ga0207667_10021186 3300025949 Bacteria 7207
99 Ga0207667_10043247 3300025949 Bacteria 4781
100 Ga0207640_10040282 3300025981 Bacteria 2962
101 Ga0207639_10755945 3300026041 Bacteria 904
102 Ga0207698_10228283 3300026142 Bacteria 1688
103 Ga0209281_1003680 3300027111 Bacteria 4915
104 Ga0307515_10103318 3300028794 Bacteria 3417
105 Ga0316181_1227055 3300030744 Bacteria 1154
106 Ga0265314_10048859 3300031711 Bacteria 2966
107 Ga0395899_0029208 3300037312 Bacteria 4147
108 Ga0395900_0089565 3300037418 Bacteria 3162
109 Ga0395905_0195323 3300037471 Bacteria 1897
110 Ga0395901_0451562 3300038443 Bacteria 1314
111 Ga0436361_0304919 3300039447 Bacteria 17033
112 Ga0436361_1128786 3300039447 Bacteria 5579
113 Ga0495617_000004 3300046452 Bacteria 511274
114 Ga0495617_004520 3300046452 Bacteria 5046
115 Ga0495617_027846 3300046452 Bacteria 1900
116 Ga0495627_000008 3300046453 Bacteria 572150
117 Ga0495590_0060585 3300046457 Bacteria 1325
118 Ga0495590_0082867 3300046457 Bacteria 1130
119 Ga0495638_0000042 3300046460 Bacteria 232752
120 Ga0495638_0109148 3300046460 Bacteria 1645
121 Ga0495638_0123739 3300046460 Bacteria 1526
122 Ga0495638_0201978 3300046460 Bacteria 1121
123 Ga0495650_0000042 3300046471 Bacteria 357244
124 Ga0495650_0000086 3300046471 Bacteria 235224
125 Ga0495650_0000165 3300046471 Bacteria 146945
126 Ga0495650_0000438 3300046471 Bacteria 66853
127 Ga0495650_0033394 3300046471 Bacteria 2290
128 Ga0495650_0034562 3300046471 Bacteria 2235
129 Ga0495605_0000022 3300046474 Bacteria 248321
130 Ga0495639_0004615 3300046475 Bacteria 5911
131 Ga0495584_0000492 3300046491 Bacteria 27206
132 Ga0495585_0000350 3300046492 Bacteria 44650
133 Ga0495585_0047878 3300046492 Bacteria 2379
134 Ga0495607_0002701 3300046501 Bacteria 14153
135 Ga0495607_0012446 3300046501 Bacteria 5617
136 Ga0495607_0027685 3300046501 Bacteria 3501
137 Ga0495607_0038988 3300046501 Bacteria 2840
138 Ga0495607_0122365 3300046501 Bacteria 1364
139 Ga0495583_0000185 3300046506 Bacteria 105958
140 Ga0495583_0000390 3300046506 Bacteria 67184
141 Ga0495583_0020089 3300046506 Bacteria 3469
142 Ga0495606_0000014 3300046507 Bacteria 289347
143 Ga0495606_0000564 3300046507 Bacteria 58780
144 Ga0495606_0003096 3300046507 Bacteria 18095
145 Ga0495606_0004900 3300046507 Bacteria 13103
146 Ga0495606_0057576 3300046507 Bacteria 2502
147 Ga0495610_0000010 3300046512 Bacteria 538821
148 Ga0495610_0001745 3300046512 Bacteria 19036
149 Ga0495610_0001957 3300046512 Bacteria 17721
150 Ga0495610_0032200 3300046512 Bacteria 2727
151 Ga0495610_0034028 3300046512 Bacteria 2628
152 Ga0495610_0038668 3300046512 Bacteria 2420
153 Ga0495610_0048349 3300046512 Bacteria 2088
154 Ga0495610_0095051 3300046512 Bacteria 1344
155 Ga0495610_0300214 3300046512 Bacteria 619
156 Ga0495616_0001994 3300046513 Bacteria 13730
157 Ga0495616_0005652 3300046513 Bacteria 7656
158 Ga0495616_0102702 3300046513 Bacteria 1339
159 Ga0495616_0183212 3300046513 Bacteria 929
160 Ga0495637_0000084 3300046520 Bacteria 73422
161 Ga0495643_0000137 3300046522 Bacteria 117968
162 Ga0495644_0003818 3300046523 Bacteria 5924
163 Ga0495648_0000061 3300046524 Bacteria 151604
164 Ga0495648_0001521 3300046524 Bacteria 22662
165 Ga0495648_0006273 3300046524 Bacteria 9730
166 Ga0495648_0035266 3300046524 Bacteria 3244
167 Ga0495648_0049552 3300046524 Bacteria 2573
168 Ga0495648_0113659 3300046524 Bacteria 1468
169 Ga0495654_0000002 3300046530 Bacteria 1021205
170 Ga0495654_0010709 3300046530 Bacteria 4980
171 Ga0495654_0020647 3300046530 Bacteria 3432
172 Ga0495609_0000240 3300046538 Bacteria 52192
173 Ga0495609_0002384 3300046538 Bacteria 11571
174 Ga0495609_0006490 3300046538 Bacteria 5962
175 Ga0495609_0023250 3300046538 Bacteria 2850
176 Ga0495597_0000276 3300046542 Bacteria 46947
177 Ga0495597_0008690 3300046542 Bacteria 5075
178 Ga0495597_0031395 3300046542 Bacteria 2418
179 Ga0495622_0000025 3300046557 Bacteria 146973
180 Ga0495622_0000272 3300046557 Bacteria 39196
181 Ga0495622_0077849 3300046557 Bacteria 1527
182 Ga0495633_0000098 3300046558 Bacteria 117269
183 Ga0495633_0000220 3300046558 Bacteria 70701
184 Ga0495633_0001657 3300046558 Bacteria 16789
185 Ga0495633_0002754 3300046558 Bacteria 12159
186 Ga0495633_0015569 3300046558 Bacteria 3943
187 Ga0495633_0020870 3300046558 Bacteria 3286
188 Ga0495633_0029527 3300046558 Bacteria 2667
189 Ga0495656_0034362 3300046615 Bacteria 2075
190 Ga0495668_0000088 3300046616 Bacteria 151503
191 Ga0495668_0001270 3300046616 Bacteria 25076
192 Ga0495668_0003088 3300046616 Bacteria 12882
193 Ga0495668_0010722 3300046616 Bacteria 5535
194 Ga0495611_0011279 3300046648 Bacteria 3789
195 Ga0495611_0027942 3300046648 Bacteria 2470
196 Ga0495611_0041835 3300046648 Bacteria 2044
197 Ga0495625_0000701 3300046660 Bacteria 47483
198 Ga0495625_0008303 3300046660 Bacteria 8874
199 Ga0495625_0014708 3300046660 Bacteria 6231
200 Ga0495625_0016170 3300046660 Bacteria 5877
201 Ga0495625_0053237 3300046660 Bacteria 2896
202 Ga0495625_0054115 3300046660 Bacteria 2867
203 Ga0495625_0078895 3300046660 Bacteria 2298
204 Ga0495625_0161028 3300046660 Bacteria 1503
205 Ga0495625_0171078 3300046660 Bacteria 1450
206 Ga0495659_0000009 3300046664 Bacteria 95820
207 Ga0495659_0000248 3300046664 Bacteria 22283
208 Ga0495659_0236170 3300046664 Bacteria 758
209 Ga0495661_0022083 3300046665 Bacteria 4142
210 Ga0495661_0290940 3300046665 Bacteria 820
211 Ga0495669_0001128 3300046684 Bacteria 11072
212 Ga0495670_0001215 3300046691 Bacteria 12525
213 Ga0495670_0017634 3300046691 Bacteria 3515
214 Ga0495670_0302517 3300046691 Bacteria 857
215 Ga0495671_0000002 3300046692 Bacteria 1136189
216 Ga0495671_0000433 3300046692 Bacteria 33219
217 Ga0495671_0022694 3300046692 Bacteria 3285
218 Ga0495671_0046079 3300046692 Bacteria 2181
219 Ga0495671_0056269 3300046692 Bacteria 1947
220 Ga0495671_0057074 3300046692 Bacteria 1932
221 Ga0495649_0009203 3300046694 Bacteria 5887
222 Ga0495649_0021974 3300046694 Bacteria 3573
223 Ga0495649_0055140 3300046694 Bacteria 2148
224 Ga0495649_0146973 3300046694 Bacteria 1239
225 Ga0495660_0000598 3300046810 Bacteria 28529
226 Ga0495660_0113988 3300046810 Bacteria 1376
227 Ga0495660_0115407 3300046810 Bacteria 1365
228 Ga0495660_0217603 3300046810 Bacteria 902
229 Ga0495636_0014465 3300047318 Bacteria 3137
230 Ga0495636_0023240 3300047318 Bacteria 2508
231 Ga0495636_0046804 3300047318 Bacteria 1805
232 Ga0495672_0000120 3300047320 Bacteria 121804
233 Ga0495672_0000347 3300047320 Bacteria 59349
234 Ga0495672_0001903 3300047320 Bacteria 19832
235 Ga0495672_0109636 3300047320 Bacteria 1483
236 Ga0495683_0008232 3300047323 Bacteria 5591
237 Ga0495687_000007 3300047443 Bacteria 552679
238 Ga0495687_001240 3300047443 Bacteria 24364
239 Ga0495677_0006740 3300047445 Bacteria 4321
240 Ga0495677_0007565 3300047445 Bacteria 4054
241 Ga0495677_0047743 3300047445 Bacteria 1572
242 Ga0495685_000036 3300047447 Bacteria 55288
243 Ga0495673_0000005 3300047469 Bacteria 943364
244 Ga0495673_0000026 3300047469 Bacteria 476378
245 Ga0495673_0000028 3300047469 Bacteria 473418
246 Ga0495673_0146948 3300047469 Bacteria 914
247 Ga0495681_0004525 3300047470 Bacteria 9477
248 Ga0495681_0308943 3300047470 Bacteria 610
249 Ga0495686_0160080 3300047472 Bacteria 1316
250 Ga0495686_0261623 3300047472 Bacteria 968
251 Ga0496100_0716776 3300048903 Bacteria 781
252 Ga0496103_0026961 3300048906 Bacteria 3478
253 Ga0496107_0262439 3300048910 Bacteria 1285
254 Ga0496114_0032688 3300048917 Bacteria 4284
255 Ga0496116_0005905 3300048919 Bacteria 11236
256 Ga0496124_0019476 3300048927 Bacteria 6315
257 Ga0496124_0024766 3300048927 Bacteria 5448
258 Ga0496124_0097154 3300048927 Bacteria 2392
259 Ga0496126_0045228 3300048929 Bacteria 4048
260 Ga0495678_000502 3300049459 Bacteria 38555
261 Ga0495678_009729 3300049459 Bacteria 4724
262 Ga0495678_010427 3300049459 Bacteria 4519
263 Ga0495682_0000412 3300049460 Bacteria 30433
264 Ga0495682_0012662 3300049460 Bacteria 3229
265 Ga0495682_0015737 3300049460 Bacteria 2865
266 Ga0501269_008952 3300049766 Bacteria 1213
267 Ga0500594_0074100 3300053118 Bacteria 1006
268 Ga0500618_000225 3300053125 Bacteria 44386
269 Ga0500586_000401 3300053145 Bacteria 8667
270 2521559336 2521172590 Bacteria 5047645
271 2600195423 2599185352 Bacteria 7228948
272 2644215262 2643221638 Bacteria 6579467
273 2644251974 2643221645 Bacteria 7207331
274 2644360628 2643221664 Bacteria 7272945
275 2644675981 2643221723 Bacteria 7095460
276 2738740316 2738541280 Bacteria 6630198
277 2738828972 2738541297 Bacteria 6549566
278 2738843428 2738541300 Bacteria 6675882
279 2739152768 2738541357 Bacteria 6549408
280 2739194688 2738543003 Bacteria 6549560
281 2739275499 2738543018 Bacteria 6718814
282 2739321164 2738543026 Bacteria 6549408
283 2739339405 2738543029 Bacteria 6549249
284 2739344543 2738543030 Bacteria 6719714
285 2819615872 2818991449 Bacteria 5518009
286 2842714878 2842711865 Bacteria 7155354
287 2857563039 2857558681 Bacteria 6617694
288 2857567372 2857564685 Bacteria 6290584
289 2904427392 2904424332 Bacteria 7633521
290 2904443749 2904439833 Bacteria 5931679
291 2904532654 2904530477 Bacteria 5876334
292 2904585148 2904584206 Bacteria 6028872
293 2904593497 2904589729 Bacteria 6113573
294 2904605677 2904601388 Bacteria 5884906
295 2919081473 2919079590 Bacteria 5946433
296 2919479778 2919476304 Bacteria 5888696
297 2928028888 2928027323 Bacteria 4382488
298 2928133844 2928130867 Bacteria 5467269
299 2941502036 2941499720 Bacteria 7599444
300 2984556350 2984555340 Bacteria 4247089
301 2984565461 2984564862 Bacteria 4339992
302 2993356553 2993356040 Bacteria 4247105
303 JGI25159J45721_1000835
304 JGI25154J39366_1001662
305 JGI25158J39367_1000356
306 JGI25157J39369_1001993
307 JGI25150J39212_1008893
308 JGI25153J46596_10049942
309 rootL2_10008814
310 rootH1_10233011
311 JGI25160J50197_1000020
312 JGI25161J50226_1000544
313 Ga0055526_1000016
314 Ga0055526_1000080
315 Ga0055526_1000467
316 Ga0055526_1000584
317 Ga0055537_1000467
318 Ga0055524_1003293
319 Ga0055534_1000009
320 Ga0055528_1000012
321 Ga0055543_1000163
322 Ga0055543_1012868
323 Ga0065165_1000013
324 Ga0065165_1000051
325 Ga0070658_10042323
326 Ga0070683_101143804
327 Ga0070660_100212366
328 Ga0070661_100119771
329 Ga0070661_100155451
330 Ga0070662_100251884
331 Ga0068853_100739773
332 Ga0070672_100823823
333 Ga0068855_100000645
334 Ga0068855_100089668
335 Ga0068855_100104340
336 Ga0070664_100181518
337 Ga0068857_100488662
338 Ga0068854_100006918
339 Ga0068852_100369146
340 Ga0068852_101150596
341 Ga0081455_10284312
342 Ga0068871_100291119
343 Ga0079104_1047130
344 Ga0105244_10019663
345 Ga0105240_10021185
346 Ga0105245_10067970
347 Ga0105243_10016096
348 Ga0105241_10199578
349 Ga0105242_10016051
350 Ga0105237_10002535
351 Ga0105238_10000213
352 Ga0105238_10027489
353 Ga0105238_10685677
354 Ga0105239_10010163
355 Ga0105239_11024967
356 Ga0105239_11169860
357 Ga0157374_10228655
358 Ga0157372_10073046
359 Ga0182006_1000023
360 Ga0182006_1001685
361 Ga0182005_1000154
362 Ga0213872_10000020
363 Ga0213872_10137566
364 Ga0209436_100498
365 Ga0209437_104390
366 Ga0207425_1009705
367 Ga0209646_1000072
368 Ga0209646_1007397
369 Ga0209026_1000013
370 Ga0209148_1023196
371 Ga0209759_1000241
372 Ga0209565_1000015
373 Ga0209673_1000017
374 Ga0209130_1000034
375 Ga0209130_1000063
376 Ga0209675_1000012
377 Ga0209564_1000002
378 Ga0209564_1000007
379 Ga0209564_1000016
380 Ga0209758_1001543
381 Ga0209256_1000346
382 Ga0207426_1000006
383 Ga0207705_10020222
384 Ga0207705_10238697
385 Ga0207654_10020071
386 Ga0207695_10002101
387 Ga0207671_10034125
388 Ga0207657_10068638
389 Ga0207649_10082582
390 Ga0207649_10254891
391 Ga0207694_10000171
392 Ga0207694_10356993
393 Ga0207690_10132787
394 Ga0207706_10057424
395 Ga0207686_10044657
396 Ga0207709_10035044
397 Ga0207709_11295407
398 Ga0207679_10068013
399 Ga0207667_10000191
400 Ga0207667_10021186
401 Ga0207667_10043247
402 Ga0207640_10040282
403 Ga0207639_10755945
404 Ga0207698_10228283
405 Ga0209281_1003680
406 Ga0307515_10103318
407 Ga0316181_1227055
408 Ga0265314_10048859
409 Ga0395899_0029208
410 Ga0395900_0089565
411 Ga0395905_0195323
412 Ga0395901_0451562
413 Ga0436361_0304919
414 Ga0436361_1128786
415 Ga0495617_000004
416 Ga0495617_004520
417 Ga0495617_027846
418 Ga0495627_000008
419 Ga0495590_0060585
420 Ga0495590_0082867
421 Ga0495638_0000042
422 Ga0495638_0109148
423 Ga0495638_0123739
424 Ga0495638_0201978
425 Ga0495650_0000042
426 Ga0495650_0000086
427 Ga0495650_0000165
428 Ga0495650_0000438
429 Ga0495650_0033394
430 Ga0495650_0034562
431 Ga0495605_0000022
432 Ga0495639_0004615
433 Ga0495584_0000492
434 Ga0495585_0000350
435 Ga0495585_0047878
436 Ga0495607_0002701
437 Ga0495607_0012446
438 Ga0495607_0027685
439 Ga0495607_0038988
440 Ga0495607_0122365
441 Ga0495583_0000185
442 Ga0495583_0000390
443 Ga0495583_0020089
444 Ga0495606_0000014
445 Ga0495606_0000564
446 Ga0495606_0003096
447 Ga0495606_0004900
448 Ga0495606_0057576
449 Ga0495610_0000010
450 Ga0495610_0001745
451 Ga0495610_0001957
452 Ga0495610_0032200
453 Ga0495610_0034028
454 Ga0495610_0038668
455 Ga0495610_0048349
456 Ga0495610_0095051
457 Ga0495610_0300214
458 Ga0495616_0001994
459 Ga0495616_0005652
460 Ga0495616_0102702
461 Ga0495616_0183212
462 Ga0495637_0000084
463 Ga0495643_0000137
464 Ga0495644_0003818
465 Ga0495648_0000061
466 Ga0495648_0001521
467 Ga0495648_0006273
468 Ga0495648_0035266
469 Ga0495648_0049552
470 Ga0495648_0113659
471 Ga0495654_0000002
472 Ga0495654_0010709
473 Ga0495654_0020647
474 Ga0495609_0000240
475 Ga0495609_0002384
476 Ga0495609_0006490
477 Ga0495609_0023250
478 Ga0495597_0000276
479 Ga0495597_0008690
480 Ga0495597_0031395
481 Ga0495622_0000025
482 Ga0495622_0000272
483 Ga0495622_0077849
484 Ga0495633_0000098
485 Ga0495633_0000220
486 Ga0495633_0001657
487 Ga0495633_0002754
488 Ga0495633_0015569
489 Ga0495633_0020870
490 Ga0495633_0029527
491 Ga0495656_0034362
492 Ga0495668_0000088
493 Ga0495668_0001270
494 Ga0495668_0003088
495 Ga0495668_0010722
496 Ga0495611_0011279
497 Ga0495611_0027942
498 Ga0495611_0041835
499 Ga0495625_0000701
500 Ga0495625_0008303
501 Ga0495625_0014708
502 Ga0495625_0016170
503 Ga0495625_0053237
504 Ga0495625_0054115
505 Ga0495625_0078895
506 Ga0495625_0161028
507 Ga0495625_0171078
508 Ga0495659_0000009
509 Ga0495659_0000248
510 Ga0495659_0236170
511 Ga0495661_0022083
512 Ga0495661_0290940
513 Ga0495669_0001128
514 Ga0495670_0001215
515 Ga0495670_0017634
516 Ga0495670_0302517
517 Ga0495671_0000002
518 Ga0495671_0000433
519 Ga0495671_0022694
520 Ga0495671_0046079
521 Ga0495671_0056269
522 Ga0495671_0057074
523 Ga0495649_0009203
524 Ga0495649_0021974
525 Ga0495649_0055140
526 Ga0495649_0146973
527 Ga0495660_0000598
528 Ga0495660_0113988
529 Ga0495660_0115407
530 Ga0495660_0217603
531 Ga0495636_0014465
532 Ga0495636_0023240
533 Ga0495636_0046804
534 Ga0495672_0000120
535 Ga0495672_0000347
536 Ga0495672_0001903
537 Ga0495672_0109636
538 Ga0495683_0008232
539 Ga0495687_000007
540 Ga0495687_001240
541 Ga0495677_0006740
542 Ga0495677_0007565
543 Ga0495677_0047743
544 Ga0495685_000036
545 Ga0495673_0000005
546 Ga0495673_0000026
547 Ga0495673_0000028
548 Ga0495673_0146948
549 Ga0495681_0004525
550 Ga0495681_0308943
551 Ga0495686_0160080
552 Ga0495686_0261623
553 Ga0496100_0716776
554 Ga0496103_0026961
555 Ga0496107_0262439
556 Ga0496114_0032688
557 Ga0496116_0005905
558 Ga0496124_0019476
559 Ga0496124_0024766
560 Ga0496124_0097154
561 Ga0496126_0045228
562 Ga0495678_000502
563 Ga0495678_009729
564 Ga0495678_010427
565 Ga0495682_0000412
566 Ga0495682_0012662
567 Ga0495682_0015737
568 Ga0501269_008952
569 Ga0500594_0074100
570 Ga0500618_000225
571 Ga0500586_000401
572 2521559336
573 2600195423
574 2644215262
575 2644251974
576 2644360628
577 2644675981
578 2738740316
579 2738828972
580 2738843428
581 2739152768
582 2739194688
583 2739275499
584 2739321164
585 2739339405
586 2739344543
587 2819615872
588 2842714878
589 2857563039
590 2857567372
591 2904427392
592 2904443749
593 2904532654
594 2904585148
595 2904593497
596 2904605677
597 2919081473
598 2919479778
599 2928028888
600 2928133844
601 2941502036
602 2984556350
603 2984565461
604 2993356553

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF00440

TetR_N

Bacterial regulatory proteins, tetR family

15

58

0.96

PF21993

TetR_C_13_2

Transcriptional regulator LmrA/YxaF-like, C-terminal domain

83

181

0.86

Structural Annotation

Top 5 Hits

ID Description Score Start End
3on4-assembly4.cif.gz_F crystal structure of tetr transcriptional regulator from legionella pneumophila 0.7778 1 180
3on4-assembly4.cif.gz_F crystal structure of tetr transcriptional regulator from legionella pneumophila 0.7742 1 180
3f1b-assembly1.cif.gz_A-2 the crystal structure of a tetr-like transcriptional regulator from rhodococcus sp. rha1. 0.7716 4 178
6nsm-assembly1.cif.gz_B tetr family transcriptional regulator cifr c99t-c107s-c181r cysteines mutant complexed with 26bp double-strand operator dna 0.7662 3 176
2g7s-assembly1.cif.gz_A-2 the crystal structure of transcriptional regulator, tetr family, from agrobacterium tumefaciens 0.7651 3 178
ID Description Score Start End Superfamily
4x1eB01 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Homeodomain-like 0.9009 7 54 1.10.10.60
4xk4D01 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Homeodomain-like 0.8867 4 54 1.10.10.60
3locA01 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Homeodomain-like 0.8865 4 54 1.10.10.60
2ns8A01 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Homeodomain-like 0.8824 7 58 1.10.10.60
2i10B01 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Homeodomain-like 0.8695 7 57 1.10.10.60
ID Description Score Start End GO Terms
AF-A0A264T395-F1-model_v4 deleted 0.9607 1 83
AF-A3X1Y3-F1-model_v4 Uncharacterized protein 0.947 1 179 GO:0003677
GO:0006355
AF-A0A3S0DW64-F1-model_v4 TetR/AcrR family transcriptional regulator 0.9433 1 178 GO:0003677
GO:0006355
AF-A0A0D6PR75-F1-model_v4 deleted 0.9402 51 180
AF-A0A252BQW7-F1-model_v4 HTH tetR-type domain-containing protein 0.9391 1 179 GO:0003677
GO:0006355

Map