F396808

General Info

Members Datasets Scaffolds Average Seq Length
303 209 606 429

Family's Representative Sequence

Representative Sequence 3300003187|JGI25151J46595_10000116|JGI25151J46595_1000011633
Length 459
Sequence MSDTASARKPLPLHWKMAIGFLTGLVLGLIAYAAGIGSVTWAQLAGDACPAVAAGGDVAWQCRPLLKLFSETVTGPAGEIFLRLIFMLVIPLLFSALVMGVSEMGDIRSFGRVGWRTLGLTVAMSAIAVVLGLVMVNVFKPGAGVDPATAQQMMSENAERAQSIVQGSADAPKGLQMLISIVPNNVIKAAADDAILAVMFFALMIGIGMVLTKSKAVDTLRDGIQGLFDISMTLIGLVIKLAPYAVFCFMFNLASQFGWDLLFKLAKYVAVVVAALAIHLFVVYALALKFVGGRSPIEFFRAVQEAMVLAFSTASSNATLPTALRVAEDELKLPRRVSRFVLTVGATANQNGTALFEGVTVIFLAQFFGVDLSLGQQVMVMLVCILGGIGTAGVPSGSLPVVAMICAMVNVPPQGIGLILGVNHFLDMCRTTLNVTGDIAIAAMVSRGVEDPPAERMED

Samples

Sample ID Description Type Environment
1 3300003187 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mLB Metagenome Endosphere
2 2162886007 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 v1 Metagenome Rhizosphere
3 3300002773 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMS Metagenome Endosphere
4 3300002774 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mTSA Metagenome Endosphere
5 3300003215 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF Metagenome Endosphere
6 3300003320 Sugarcane root Sample H2 Metagenome Unclassified
7 3300003771 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMF_r2 Metagenome Endosphere
8 3300003773 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mTSA_r2 Metagenome Endosphere
9 3300003775 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mCL_r2 Metagenome Endosphere
10 3300003781 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mLB_r2 Metagenome Endosphere
11 3300003784 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mLB_r2 Metagenome Endosphere
12 3300003790 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMS_r2 Metagenome Endosphere
13 3300003791 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 Metagenome Endosphere
14 3300003792 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mMS_r2 Metagenome Endosphere
15 3300003794 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 Metagenome Endosphere
16 3300003856 Agave microbial communities from Guanajuato, Mexico - At.Am.rz Metagenome Rhizosphere
17 3300005289 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 v2 (version 2) Metagenome Rhizosphere
18 3300005295 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL3 v2 (version 2) Metagenome Rhizosphere
19 3300005339 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG Metagenome Rhizosphere
20 3300005344 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG Metagenome Rhizosphere
21 3300005345 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-2 metaG Metagenome Rhizosphere
22 3300005347 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG Metagenome Rhizosphere
23 3300005366 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG Metagenome Rhizosphere
24 3300005435 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG Metagenome Rhizosphere
25 3300005457 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG Metagenome Rhizosphere
26 3300005458 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG Metagenome Rhizosphere
27 3300005530 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG Metagenome Rhizosphere
28 3300005539 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 Metagenome Rhizosphere
29 3300005546 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-3 metaG Metagenome Rhizosphere
30 3300005547 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-3 metaG Metagenome Rhizosphere
31 3300005577 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 Metagenome Rhizosphere
32 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
33 3300006051 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 Metagenome Endosphere
34 3300006195 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 Metagenome Endosphere
35 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
36 3300006880 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 Metagenome Rhizosphere
37 3300009011 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-4 metaG Metagenome Rhizosphere
38 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
39 3300009148 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG Metagenome Rhizosphere
40 3300009176 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG Metagenome Rhizosphere
41 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
42 3300013102 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG Metagenome Rhizosphere
43 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
44 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
45 3300014497 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-129_1 metaG Metagenome Rhizosphere
46 3300015261 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-104_1 MetaG Metagenome Rhizosphere
47 3300015262 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-113_1 MetaG Metagenome Rhizosphere
48 3300015265 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-103_1 MetaG Metagenome Rhizosphere
49 3300015689 Rizhosphere microbial communities from mature sugarcane plants Campinas, Sao Paulo, Brazil - 001.1_A02 Metagenome Rhizosphere
50 3300025229 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mLB_r2 (SPAdes) (version 2) Metagenome Endosphere
51 3300025245 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mTSA (SPAdes) (version 3) Metagenome Endosphere
52 3300025258 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMS (SPAdes) (version 3) Metagenome Endosphere
53 3300025263 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mTSA_r2 (SPAdes) (version 3) Metagenome Endosphere
54 3300025273 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMS_r2 (SPAdes) (version 3) Metagenome Endosphere
55 3300025284 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mLB (SPAdes) (version 2) Metagenome Endosphere
56 3300025291 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mLB_r2 (SPAdes) (version 3) Metagenome Endosphere
57 3300025292 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mLB_r2 (SPAdes) (version 2) Metagenome Endosphere
58 3300025294 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mLB (SPAdes) (version 2) Metagenome Endosphere
59 3300025295 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMF_r2 (SPAdes) (version 3) Metagenome Endosphere
60 3300025297 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF (SPAdes) (version 2) Metagenome Endosphere
61 3300025298 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 (SPAdes) (version 2) Metagenome Endosphere
62 3300025299 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mCL_r2 (SPAdes) (version 3) Metagenome Endosphere
63 3300025303 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mMS_r2 (SPAdes) (version 2) Metagenome Endosphere
64 3300025304 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
65 3300025735 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
66 3300025904 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2 (SPAdes) (version 2) Metagenome Rhizosphere
67 3300025912 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
68 3300025919 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
69 3300025924 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
70 3300025929 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
71 3300025932 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
72 3300025933 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
73 3300025935 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
74 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
75 3300025972 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
76 3300026041 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes) (version 2) Metagenome Rhizosphere
77 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
78 3300026121 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
79 3300027312 Agave microbial communities from Guanajuato, Mexico - At.Am.rz (SPAdes) (version 2) Metagenome Rhizosphere
80 3300027665 Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M1 S PM (SPAdes) (version 2) Metagenome Rhizosphere
81 3300027876 Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M3 S PM (SPAdes) (version 2) Metagenome Rhizosphere
82 3300030500 Agave microbial communities from Guanajuato, Mexico - At.Am.rz (v2) (version 3) Metagenome Rhizosphere
83 3300030732 Rhizosphere soil microbial communities in infected wheat plant from Wellcamp field in Toowoomba, Australia - sample 1 Metagenome Rhizosphere
84 3300030744 Rhizosphere soil microbial communities in a healthy wheat plant from a non-infected Wellcamp field in Toowoomba, Australia - sample 7 Metagenome Rhizosphere
85 3300031548 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3 Metagenome Rhizosphere
86 3300031731 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-1 Metagenome Rhizosphere
87 3300031824 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-2 Metagenome Rhizosphere
88 3300031852 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-3 Metagenome Rhizosphere
89 3300031901 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2 Metagenome Rhizosphere
90 3300031903 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-1 Metagenome Rhizosphere
91 3300031911 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1 Metagenome Rhizosphere
92 3300031995 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2 Metagenome Rhizosphere
93 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
94 3300032004 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3 Metagenome Rhizosphere
95 3300032005 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-1 Metagenome Rhizosphere
96 3300032126 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-2 Metagenome Rhizosphere
97 3300038705 Coralloid root microbial communities from Raymundo Flores, Chiapas, Mexico - RF1-T1 Metagenome Unclassified
98 3300041407 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0216DE14Z080117_5416 Metagenome Rhizosphere
99 3300041443 Perennial ryegrass root microbial community from Lincoln, Canterbury, New Zealand - RGR17_2 MetaG Metagenome Rhizoplane
100 3300041452 Perennial ryegrass root microbial community from Lincoln, Canterbury, New Zealand - RGR17_4 MetaG Metagenome Rhizoplane
101 3300041459 Perennial ryegrass root microbial community from Lincoln, Canterbury, New Zealand - RGR18_11 MetaG Metagenome Rhizoplane
102 3300041462 Perennial ryegrass root microbial community from Lincoln, Canterbury, New Zealand - RGR18_8 MetaG Metagenome Rhizoplane
103 3300041463 Perennial ryegrass root microbial community from Lincoln, Canterbury, New Zealand - RGR18_7 MetaG Metagenome Rhizoplane
104 3300041486 Perennial ryegrass root microbial community from Lincoln, Canterbury, New Zealand - RGR18_9 MetaG Metagenome Rhizoplane
105 3300042006 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0612WE14Z080117_5437 Metagenome Rhizosphere
106 3300042007 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0612DE14Z070717_5290 Metagenome Rhizosphere
107 3300042015 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0503WE14Z070717_5287 Metagenome Rhizosphere
108 3300042116 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0126F_E14_082316_1792 Metagenome Rhizosphere
109 3300042122 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0926D_E14_082716_2496 Metagenome Rhizosphere
110 3300046460 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co3_31_37 rhizosphere Metagenome Rhizosphere
111 3300046491 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co2_41_23 rhizosphere Metagenome Rhizosphere
112 3300046512 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co2_50_17 rhizosphere Metagenome Rhizosphere
113 3300046522 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 rhizosphere Metagenome Rhizosphere
114 3300046539 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co3_13_34 rhizosphere Metagenome Rhizosphere
115 3300046558 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co3_6_53 rhizosphere Metagenome Rhizosphere
116 3300046615 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-866-Co3_27_48 rhizosphere Metagenome Rhizosphere
117 3300046616 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co1_14_4 rhizosphere Metagenome Rhizosphere
118 3300046660 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co1_32_7 rhizosphere Metagenome Rhizosphere
119 3300046691 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co3_14_51 rhizosphere Metagenome Rhizosphere
120 3300046692 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co1_37_5 rhizosphere Metagenome Rhizosphere
121 3300046810 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co2_51_17 rhizosphere Metagenome Rhizosphere
122 3300047318 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co1_6_4 rhizosphere Metagenome Rhizosphere
123 3300047320 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co2_68_28 rhizosphere Metagenome Rhizosphere
124 3300047472 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co2_54_22 rhizosphere Metagenome Rhizosphere
125 3300048919 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_7x unlabeled Metagenome Unclassified
126 3300048920 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1e N15 Metagenome Unclassified
127 3300048921 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1f N15 Metagenome Unclassified
128 3300048922 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2e N15 Metagenome Unclassified
129 3300048923 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2f N15 Metagenome Unclassified
130 3300048925 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8x unlabeled Metagenome Unclassified
131 3300048926 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8y unlabeled Metagenome Unclassified
132 3300048927 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_4e N15 Metagenome Unclassified
133 3300048928 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_5e N15 Metagenome Unclassified
134 3300049459 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co2_62_24 rhizosphere Metagenome Rhizosphere
135 3300049522 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - C24_B_7_control Metagenome Rhizosphere
136 3300049569 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_02 Metagenome Rhizosphere
137 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
138 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
139 3300049579 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 Metagenome Rhizosphere
140 3300049584 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_02 Metagenome Rhizosphere
141 3300049586 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 Metagenome Rhizosphere
142 3300049663 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - I4_A_2_drought Metagenome Rhizosphere
143 3300049664 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - B5_A_2_drought Metagenome Rhizosphere
144 3300049686 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - I11_B_3_control Metagenome Rhizosphere
145 3300049705 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - C1_A_2_drought Metagenome Rhizosphere
146 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
147 3300049759 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - C13_A_4_drought Metagenome Rhizosphere
148 3300049776 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - H24_A_5_drought Metagenome Rhizosphere
149 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
150 3300049853 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - F4_A_2_drought Metagenome Rhizosphere
151 3300050491 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 re-annotation Metagenome Endosphere
152 3300050508 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 re-annotation Metagenome Rhizosphere
153 3300050511 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation Metagenome Rhizosphere
154 3300050515 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 re-annotation Metagenome Rhizosphere
155 3300053087 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co3_14_51 endosphere Metagenome Endosphere
156 3300053161 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co3_16_51 endosphere Metagenome Endosphere
157 2547132130 Stenotrophomonas maltophilia RR-10 Isolate Unclassified
158 2571042365 Lysobacter oryzae DSM 21044 Isolate Rhizosphere
159 2576861471 Stenotrophomonas rhizophila DSM 14405 Isolate Rhizosphere
160 2643221559 Lysobacter sp. Root559 Isolate Unclassified
161 2643221579 Pseudoxanthomonas sp. Root630 Isolate Unclassified
162 2643221581 Pseudoxanthomonas sp. Root65 Isolate Unclassified
163 2643221586 Lysobacter sp. Root667 Isolate Unclassified
164 2643221593 Lysobacter sp. Root690 Isolate Unclassified
165 2643221612 Lysobacter sp. Root76 Isolate Unclassified
166 2643221695 Lysobacter sp. Root494 Isolate Unclassified
167 2643221727 Lysobacter sp. Root96 Isolate Unclassified
168 2747842428 Stenotrophomonas sp. WCS2014-113 Isolate Unclassified
169 2747842501 Xanthomonas sp. WCS2014-23 Isolate Unclassified
170 2765235840 Stenotrophomonas maltophilia AA1 Isolate Unclassified
171 2816332141 Stenotrophomonas muris 1190 (v2) (version 2) Isolate Unclassified
172 2818991457 Xanthomonas translucens 569 Isolate Unclassified
173 2842391507 Stenotrophomonas maltophilia SEMIA 4027 Isolate Nodule
174 2842757796 Stenotrophomonas sp. R-72406 Isolate Unclassified
175 2852649853 Stenotrophomonas sp. JAI102 Isolate Rhizosphere
176 2852684882 Xanthomonas sp. JAI131 Isolate Rhizosphere
177 2857442823 Stenotrophomonas sp. R-74235 Isolate Unclassified
178 2874220319 Stenotrophomonas maltophilia PS5 Isolate Unclassified
179 2885427238 Sphingomonas mesophila SYSUP0001 Isolate Stem Tuber
180 2895498888 Pseudoxanthomonas sp. SGD-10 Isolate Rhizosphere
181 2895511927 Pseudoxanthomonas sp. SGD-5-1 Isolate Rhizosphere
182 2895522137 Pseudoxanthomonas sp. SGNA-20 Isolate Rhizosphere
183 2895525241 Pseudoxanthomonas sp. SGT-18 Isolate Rhizosphere
184 2896429255 Sphingomonas rhizophila KACC 19189 Isolate Rhizosphere
185 2919089067 Stenotrophomonas sp. 1337 Isolate Rhizosphere
186 2919130084 Xanthomonas sp. 1678 Isolate Rhizosphere
187 2919134579 Stenotrophomonas geniculata 1733 Isolate Rhizosphere
188 2919709256 Sphingobium xenophagum 4256 Isolate Unclassified
189 2923516293 Pseudoxanthomonas mexicana SLBN-89 Isolate Rhizosphere
190 2928496128 Stenotrophomonas indicatrix 1163 Isolate Unclassified
191 2929195423 Xanthomonas sp. R-73098 Hybrid assembly Isolate Unclassified
192 2931380184 Stenotrophomonas sp. DR822 Isolate Rhizosphere
193 2937610967 Stenotrophomonas maltophilia EP20 Isolate Unclassified
194 2939589442 Stenotrophomonas rhizophila 716 Isolate Rhizosphere
195 2939611941 Rhodanobacter soli 1757 Isolate Rhizosphere
196 2939622612 Stenotrophomonas sp. 2619 Isolate Rhizosphere
197 2939626828 Stenotrophomonas sp. 2694 Isolate Rhizosphere
198 2941475908 Stenotrophomonas rhizophila 2680 Isolate Rhizosphere
199 2941489479 Lysobacter enzymogenes 2943 Isolate Rhizosphere
200 2961047084 Stenotrophomonas maltophilia EP5 Isolate Unclassified
201 2961064222 Stenotrophomonas maltophilia EP13 Isolate Unclassified
202 2974307012 Stenotrophomonas sp. SORGH_AS_0282 Isolate Unclassified
203 2977247770 Stenotrophomonas rhizophila SORGH_AS 457 Isolate Unclassified
204 2984514374 Stenotrophomonas sp. SORGH_AS282 Isolate Aerial Root
205 2987605356 Stenotrophomonas sp. ATCM1_4 Isolate Unclassified
206 2995948881 Lysobacter enzymogenes B25 Isolate Unclassified
207 8021622325 Xanthomonas sp. LMG12462 Isolate Rhizosphere
208 8021626552 Xanthomonas sp. LMG12460 Isolate Rhizosphere
209 8021648035 Xanthomonas sp. LMG 12461 Isolate Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 82.51
Metatranscriptomes 0
Isolates 17.49

Biome Distribution

Category Percentage (%)
Aerial Root 0.33
Bulb 0
Endosphere 19.14
Nodule 0.33
Rhizoplane 1.98
Rhizosphere 61.72
Stem 0
Stem Tuber 0.33
Unclassified 0

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 JGI25151J46595_10000116 3300003187 Bacteria 107172
2 SwRhRL2b_contig_3207873 2162886007 Bacteria 73231
3 SwRhRL2b_contig_882768 2162886007 Bacteria 1829
4 JGI25152J39213_1000069 3300002773 Bacteria 67815
5 JGI25150J39212_1000214 3300002774 Bacteria 31523
6 JGI25151J46595_10000105 3300003187 Bacteria 113763
7 JGI25153J46596_10000077 3300003215 Bacteria 113763
8 rootH2_10032866 3300003320 Bacteria 8470
9 Ga0055526_1000126 3300003771 Bacteria 67619
10 Ga0055526_1005486 3300003771 Bacteria 7275
11 Ga0055537_1000088 3300003773 Bacteria 66713
12 Ga0055537_1001172 3300003773 Bacteria 11211
13 Ga0055524_1000074 3300003775 Bacteria 122843
14 Ga0055536_1002170 3300003781 Bacteria 11184
15 Ga0055536_1002511 3300003781 Bacteria 10290
16 Ga0055534_1000097 3300003784 Bacteria 67619
17 Ga0055534_1000154 3300003784 Bacteria 51139
18 Ga0055528_1000028 3300003790 Bacteria 122843
19 Ga0055528_1001035 3300003790 Bacteria 18390
20 Ga0055530_10001279 3300003791 Bacteria 19016
21 Ga0055540_1024473 3300003792 Bacteria 1497
22 Ga0055531_10008213 3300003794 Bacteria 5556
23 Ga0058692_1000013 3300003856 Bacteria 316299
24 Ga0058692_1000035 3300003856 Bacteria 152983
25 Ga0065704_10005968 3300005289 Bacteria 4679
26 Ga0065704_10070205 3300005289 Bacteria 83747
27 Ga0065704_10075342 3300005289 Bacteria 5648
28 Ga0065707_10082575 3300005295 Bacteria 13611
29 Ga0070660_100019161 3300005339 Bacteria 5009
30 Ga0070661_100014868 3300005344 Bacteria 5490
31 Ga0070692_10004925 3300005345 Bacteria 5629
32 Ga0070668_100060668 3300005347 Bacteria 2929
33 Ga0070659_100021017 3300005366 Bacteria 4964
34 Ga0070714_100000034 3300005435 Bacteria 130742
35 Ga0070662_100101716 3300005457 Bacteria 2176
36 Ga0070662_100228108 3300005457 Bacteria 1489
37 Ga0070681_10003837 3300005458 Bacteria 14132
38 Ga0070679_100013346 3300005530 Bacteria 7866
39 Ga0068853_100024934 3300005539 Bacteria 5018
40 Ga0070696_100013414 3300005546 Bacteria 5498
41 Ga0070693_100003215 3300005547 Bacteria 7581
42 Ga0068857_100053498 3300005577 Bacteria 3581
43 Ga0068856_100010213 3300005614 Bacteria 9128
44 Ga0075364_10001952 3300006051 Bacteria 11489
45 Ga0075364_10082382 3300006051 Bacteria 2129
46 Ga0075366_10001187 3300006195 Bacteria 12916
47 Ga0075428_100064245 3300006844 Bacteria 4019
48 Ga0075429_100004173 3300006880 Bacteria 12371
49 Ga0105251_10000067 3300009011 Bacteria 99481
50 Ga0105251_10001885 3300009011 Bacteria 17198
51 Ga0111539_10000193 3300009094 Bacteria 71342
52 Ga0111539_10046219 3300009094 Bacteria 5208
53 Ga0105243_10084834 3300009148 Bacteria 2595
54 Ga0105242_10227695 3300009176 Bacteria 1669
55 Ga0105237_10036017 3300009545 Bacteria 5007
56 Ga0157371_10000184 3300013102 Bacteria 92100
57 Ga0157370_10167271 3300013104 Bacteria 2044
58 Ga0157372_10051649 3300013307 Bacteria 4575
59 Ga0182008_10052174 3300014497 Bacteria 2028
60 Ga0182006_1011499 3300015261 Bacteria 3893
61 Ga0182007_10000219 3300015262 Bacteria 38463
62 Ga0182005_1000213 3300015265 Bacteria 38351
63 Ga0183360_10001 3300015689 Bacteria 3943671
64 Ga0209147_100759 3300025229 Bacteria 15802
65 Ga0207425_1000045 3300025245 Bacteria 194257
66 Ga0207425_1002811 3300025245 Bacteria 5873
67 Ga0209129_1000057 3300025258 Bacteria 253632
68 Ga0209565_1000023 3300025263 Bacteria 388244
69 Ga0209565_1000034 3300025263 Bacteria 312950
70 Ga0209565_1005135 3300025263 Bacteria 3850
71 Ga0209673_1000039 3300025273 Bacteria 312950
72 Ga0209673_1000047 3300025273 Bacteria 289276
73 Ga0209130_1008238 3300025284 Bacteria 3099
74 Ga0209675_1000016 3300025291 Bacteria 391965
75 Ga0209675_1000023 3300025291 Bacteria 312950
76 Ga0209676_1000027 3300025292 Bacteria 560222
77 Ga0209676_1000037 3300025292 Bacteria 457562
78 Ga0209676_1000160 3300025292 Bacteria 161069
79 Ga0209676_1000338 3300025292 Bacteria 89337
80 Ga0209025_1000013 3300025294 Bacteria 871757
81 Ga0209025_1000023 3300025294 Bacteria 541307
82 Ga0209564_1000066 3300025295 Bacteria 312899
83 Ga0209564_1000194 3300025295 Bacteria 141518
84 Ga0209758_1000014 3300025297 Bacteria 871757
85 Ga0209758_1019543 3300025297 Bacteria 3261
86 Ga0209050_1000352 3300025298 Bacteria 88558
87 Ga0209050_1000372 3300025298 Bacteria 85772
88 Ga0209256_1000048 3300025299 Bacteria 312899
89 Ga0209256_1002334 3300025299 Bacteria 15836
90 Ga0209256_1012506 3300025299 Bacteria 3237
91 Ga0209051_1005931 3300025303 Bacteria 7012
92 Ga0209257_1000177 3300025304 Bacteria 161069
93 Ga0209257_1000383 3300025304 Bacteria 88315
94 Ga0209257_1006478 3300025304 Bacteria 7513
95 Ga0207713_1000274 3300025735 Bacteria 62062
96 Ga0207647_10003931 3300025904 Bacteria 11095
97 Ga0207707_10023848 3300025912 Bacteria 5351
98 Ga0207657_10015305 3300025919 Bacteria 7436
99 Ga0207694_10027045 3300025924 Bacteria 4367
100 Ga0207664_10000021 3300025929 Bacteria 216875
101 Ga0207690_10007879 3300025932 Bacteria 6328
102 Ga0207690_10012977 3300025932 Bacteria 4995
103 Ga0207706_10103252 3300025933 Bacteria 2508
104 Ga0207709_10006003 3300025935 Bacteria 6845
105 Ga0207667_10031630 3300025949 Bacteria 5710
106 Ga0207668_10104972 3300025972 Bacteria 2108
107 Ga0207639_10010440 3300026041 Bacteria 6433
108 Ga0207639_10057943 3300026041 Bacteria 2977
109 Ga0207674_10011473 3300026116 Bacteria 9955
110 Ga0207674_10017268 3300026116 Bacteria 7873
111 Ga0207683_10168126 3300026121 Bacteria 1985
112 Ga0209371_1000007 3300027312 Bacteria 1050654
113 Ga0209371_1000043 3300027312 Bacteria 331009
114 Ga0209983_1004341 3300027665 Bacteria 2983
115 Ga0209983_1011053 3300027665 Bacteria 1846
116 Ga0209974_10001178 3300027876 Bacteria 9337
117 Ga0209974_10005909 3300027876 Bacteria 4291
118 Ga0209974_10008659 3300027876 Bacteria 3468
119 Ga0268256_1000008 3300030500 Bacteria 1050654
120 Ga0268256_1000044 3300030500 Bacteria 330997
121 Ga0316176_1081678 3300030732 Bacteria 1662
122 Ga0316181_1053269 3300030744 Bacteria 2062
123 Ga0307408_100059066 3300031548 Bacteria 2790
124 Ga0307408_100066687 3300031548 Bacteria 2644
125 Ga0307408_100099642 3300031548 Bacteria 2211
126 Ga0307405_10002851 3300031731 Bacteria 7771
127 Ga0307405_10019515 3300031731 Bacteria 3767
128 Ga0307405_10090266 3300031731 Bacteria 2026
129 Ga0307413_10018025 3300031824 Bacteria 3693
130 Ga0307413_10021609 3300031824 Bacteria 3450
131 Ga0307413_10029891 3300031824 Bacteria 3055
132 Ga0307413_10037581 3300031824 Bacteria 2797
133 Ga0307413_10049418 3300031824 Bacteria 2520
134 Ga0307410_10017904 3300031852 Bacteria 4267
135 Ga0307410_10023174 3300031852 Bacteria 3854
136 Ga0307410_10068387 3300031852 Bacteria 2453
137 Ga0307410_10077901 3300031852 Bacteria 2319
138 Ga0307410_10194642 3300031852 Bacteria 1544
139 Ga0307406_10000978 3300031901 Bacteria 15942
140 Ga0307406_10001980 3300031901 Bacteria 11194
141 Ga0307406_10041756 3300031901 Bacteria 2859
142 Ga0307406_10138838 3300031901 Bacteria 1717
143 Ga0307407_10013420 3300031903 Bacteria 3976
144 Ga0307412_10128872 3300031911 Bacteria 1834
145 Ga0307409_100029929 3300031995 Bacteria 3905
146 Ga0307409_100030765 3300031995 Bacteria 3862
147 Ga0307409_100049721 3300031995 Bacteria 3198
148 Ga0307409_100122615 3300031995 Bacteria 2204
149 Ga0307416_100015907 3300032002 Bacteria 5211
150 Ga0307416_100027547 3300032002 Bacteria 4211
151 Ga0307416_100083220 3300032002 Bacteria 2714
152 Ga0307414_10000095 3300032004 Bacteria 67330
153 Ga0307414_10001423 3300032004 Bacteria 12427
154 Ga0307414_10004416 3300032004 Bacteria 7639
155 Ga0307414_10005160 3300032004 Bacteria 7166
156 Ga0307414_10050290 3300032004 Bacteria 2886
157 Ga0307414_10113382 3300032004 Bacteria 2069
158 Ga0307411_10008491 3300032005 Bacteria 5329
159 Ga0307411_10025746 3300032005 Bacteria 3530
160 Ga0307411_10037796 3300032005 Bacteria 3039
161 Ga0307411_10070937 3300032005 Bacteria 2359
162 Ga0307415_100006043 3300032126 Bacteria 6488
163 Ga0307415_100099873 3300032126 Bacteria 2125
164 Ga0307415_100238217 3300032126 Bacteria 1470
165 Ga0237819_00143 3300038705 Bacteria 26793
166 Ga0237819_05931 3300038705 Bacteria 1877
167 Ga0439447_000889 3300041407 Bacteria 10904
168 Ga0451789_0780307 3300041443 Bacteria 1512
169 Ga0451793_0510014 3300041452 Bacteria 3356
170 Ga0451800_0194332 3300041459 Bacteria 4367
171 Ga0451806_154522 3300041462 Bacteria 3428
172 Ga0451804_1156008 3300041463 Bacteria 4256
173 Ga0451807_1701970 3300041486 Bacteria 4035
174 Ga0439432_005174 3300042006 Bacteria 4713
175 Ga0439432_007691 3300042006 Bacteria 3814
176 Ga0439432_021810 3300042006 Bacteria 2119
177 Ga0439449_0008964 3300042007 Bacteria 3794
178 Ga0439449_0015886 3300042007 Bacteria 2830
179 Ga0439462_0019046 3300042015 Bacteria 1785
180 Ga0439462_0028404 3300042015 Bacteria 1479
181 Ga0450912_000145 3300042116 Bacteria 2698
182 Ga0450920_016337 3300042122 Bacteria 1414
183 Ga0495638_0108714 3300046460 Bacteria 1649
184 Ga0495584_0017867 3300046491 Bacteria 3608
185 Ga0495610_0000756 3300046512 Bacteria 30516
186 Ga0495643_0088760 3300046522 Bacteria 1598
187 Ga0495621_0028113 3300046539 Bacteria 1910
188 Ga0495633_0003633 3300046558 Bacteria 10198
189 Ga0495656_0043735 3300046615 Bacteria 1882
190 Ga0495668_0002652 3300046616 Bacteria 14378
191 Ga0495668_0043055 3300046616 Bacteria 2512
192 Ga0495625_0018954 3300046660 Bacteria 5354
193 Ga0495625_0104900 3300046660 Bacteria 1937
194 Ga0495670_0047635 3300046691 Bacteria 2143
195 Ga0495671_0005490 3300046692 Bacteria 7419
196 Ga0495660_0017968 3300046810 Bacteria 4069
197 Ga0495636_0053595 3300047318 Bacteria 1693
198 Ga0495672_0001225 3300047320 Bacteria 25853
199 Ga0495686_0012744 3300047472 Bacteria 5867
200 Ga0496116_0002306 3300048919 Bacteria 20233
201 Ga0496117_0000822 3300048920 Bacteria 48105
202 Ga0496118_0011750 3300048921 Bacteria 8510
203 Ga0496119_0000800 3300048922 Bacteria 42083
204 Ga0496119_0002532 3300048922 Bacteria 19895
205 Ga0496120_0000970 3300048923 Bacteria 39064
206 Ga0496120_0002292 3300048923 Bacteria 19856
207 Ga0496122_0000241 3300048925 Bacteria 122954
208 Ga0496122_0001795 3300048925 Bacteria 32865
209 Ga0496122_0002320 3300048925 Bacteria 27466
210 Ga0496123_0000453 3300048926 Bacteria 72860
211 Ga0496123_0000960 3300048926 Bacteria 44650
212 Ga0496123_0001110 3300048926 Bacteria 40337
213 Ga0496123_0037575 3300048926 Bacteria 3417
214 Ga0496124_0000460 3300048927 Bacteria 70590
215 Ga0496124_0001341 3300048927 Bacteria 36941
216 Ga0496124_0065670 3300048927 Bacteria 3024
217 Ga0496124_0091568 3300048927 Bacteria 2477
218 Ga0496125_0005552 3300048928 Bacteria 13957
219 Ga0495678_024247 3300049459 Bacteria 2622
220 Ga0501299_005360 3300049522 Bacteria 1968
221 Ga0501032_0028834 3300049569 Bacteria 3812
222 Ga0501034_0001242 3300049571 Bacteria 34633
223 Ga0501034_0001478 3300049571 Bacteria 31052
224 Ga0501034_0011631 3300049571 Bacteria 9111
225 Ga0501034_0030778 3300049571 Bacteria 5454
226 Ga0501034_0039295 3300049571 Bacteria 4793
227 Ga0501038_0083030 3300049574 Bacteria 2697
228 Ga0501038_0091394 3300049574 Bacteria 2550
229 Ga0501043_0066246 3300049579 Bacteria 2836
230 Ga0501068_0046519 3300049584 Bacteria 2617
231 Ga0501070_0101313 3300049586 Bacteria 2382
232 Ga0501223_000657 3300049663 Bacteria 8311
233 Ga0501224_000008 3300049664 Bacteria 111708
234 Ga0501257_000100 3300049686 Bacteria 20336
235 Ga0501225_0000030 3300049705 Bacteria 47713
236 Ga0501080_0065705 3300049742 Bacteria 3374
237 Ga0501262_001324 3300049759 Bacteria 2770
238 Ga0501280_001425 3300049776 Bacteria 4440
239 Ga0501044_0058525 3300049823 Bacteria 3951
240 Ga0501044_0293481 3300049823 Bacteria 1557
241 Ga0501226_000042 3300049853 Bacteria 59224
242 nmdc:mga00v17_1287_c1 3300050491 Bacteria 13178
243 nmdc:mga00v17_129045_c1 3300050491 Bacteria 1615
244 nmdc:mga00v17_42093_c1 3300050491 Bacteria 2746
245 nmdc:mga09592_15402_c1 3300050508 Bacteria 6246
246 nmdc:mga08y16_652_c1 3300050511 Bacteria 32568
247 nmdc:mga08y16_89526_c1 3300050511 Bacteria 3207
248 nmdc:mga0a205_91075_c1 3300050515 Bacteria 2946
249 Ga0500643_001406 3300053087 Bacteria 13902
250 Ga0500634_0000022 3300053161 Bacteria 95424
251 2547503442 2547132130 Bacteria 4660562
252 2572254423 2571042365 Bacteria 3289345
253 2578457185 2576861471 Bacteria 4648976
254 2643816756 2643221559 Bacteria 4424915
255 2643905251 2643221579 Bacteria 4443405
256 2643914937 2643221581 Bacteria 3893603
257 2643938564 2643221586 Bacteria 4446529
258 2643973788 2643221593 Bacteria 6296053
259 2644077689 2643221612 Bacteria 4361984
260 2644528295 2643221695 Bacteria 3441323
261 2644693996 2643221727 Bacteria 4415595
262 2747950259 2747842428 Bacteria 4689383
263 2748016859 2747842501 Bacteria 5293829
264 2765580310 2765235840 Bacteria 4663337
265 2816518664 2816332141 Bacteria 4436036
266 2819661096 2818991457 Bacteria 5323295
267 2842395545 2842391507 Bacteria 4486072
268 2842759159 2842757796 Bacteria 3981385
269 2852652320 2852649853 Bacteria 4036942
270 2852686950 2852684882 Bacteria 5463342
271 2857445146 2857442823 Bacteria 4562550
272 2874222982 2874220319 Bacteria 4594709
273 2885428405 2885427238 Bacteria 2291351
274 2895499420 2895498888 Bacteria 5283788
275 2895512441 2895511927 Bacteria 6802080
276 2895522452 2895522137 Bacteria 3284416
277 2895525776 2895525241 Bacteria 3388457
278 2896430431 2896429255 Bacteria 2557483
279 2919092825 2919089067 Bacteria 4560942
280 2919131272 2919130084 Bacteria 5301837
281 2919137431 2919134579 Bacteria 4480386
282 2919712654 2919709256 Bacteria 4318106
283 2923517366 2923516293 Bacteria 3716336
284 2928499197 2928496128 Bacteria 4631123
285 2929196512 2929195423 Bacteria 5325372
286 2931383555 2931380184 Bacteria 4455911
287 2937614950 2937610967 Bacteria 4618818
288 2939589627 2939589442 Bacteria 4214238
289 2939614589 2939611941 Bacteria 3892017
290 2939624308 2939622612 Bacteria 4698046
291 2939630259 2939626828 Bacteria 4695272
292 2941478936 2941475908 Bacteria 4145589
293 2941493096 2941489479 Bacteria 6313767
294 2961049747 2961047084 Bacteria 4594415
295 2961066578 2961064222 Bacteria 4749990
296 2974307818 2974307012 Bacteria 4172388
297 2977248537 2977247770 Bacteria 4160543
298 2984516976 2984514374 Bacteria 4172479
299 2987608583 2987605356 Bacteria 4187822
300 2995953161 2995948881 Bacteria 6358104
301 8021626242 8021622325 Bacteria 4844743
302 8021627699 8021626552 Bacteria 4665214
303 8021651290 8021648035 Bacteria 4772378
304 JGI25151J46595_10000116
305 SwRhRL2b_contig_3207873
306 SwRhRL2b_contig_882768
307 JGI25152J39213_1000069
308 JGI25150J39212_1000214
309 JGI25151J46595_10000105
310 JGI25153J46596_10000077
311 rootH2_10032866
312 Ga0055526_1000126
313 Ga0055526_1005486
314 Ga0055537_1000088
315 Ga0055537_1001172
316 Ga0055524_1000074
317 Ga0055536_1002170
318 Ga0055536_1002511
319 Ga0055534_1000097
320 Ga0055534_1000154
321 Ga0055528_1000028
322 Ga0055528_1001035
323 Ga0055530_10001279
324 Ga0055540_1024473
325 Ga0055531_10008213
326 Ga0058692_1000013
327 Ga0058692_1000035
328 Ga0065704_10005968
329 Ga0065704_10070205
330 Ga0065704_10075342
331 Ga0065707_10082575
332 Ga0070660_100019161
333 Ga0070661_100014868
334 Ga0070692_10004925
335 Ga0070668_100060668
336 Ga0070659_100021017
337 Ga0070714_100000034
338 Ga0070662_100101716
339 Ga0070662_100228108
340 Ga0070681_10003837
341 Ga0070679_100013346
342 Ga0068853_100024934
343 Ga0070696_100013414
344 Ga0070693_100003215
345 Ga0068857_100053498
346 Ga0068856_100010213
347 Ga0075364_10001952
348 Ga0075364_10082382
349 Ga0075366_10001187
350 Ga0075428_100064245
351 Ga0075429_100004173
352 Ga0105251_10000067
353 Ga0105251_10001885
354 Ga0111539_10000193
355 Ga0111539_10046219
356 Ga0105243_10084834
357 Ga0105242_10227695
358 Ga0105237_10036017
359 Ga0157371_10000184
360 Ga0157370_10167271
361 Ga0157372_10051649
362 Ga0182008_10052174
363 Ga0182006_1011499
364 Ga0182007_10000219
365 Ga0182005_1000213
366 Ga0183360_10001
367 Ga0209147_100759
368 Ga0207425_1000045
369 Ga0207425_1002811
370 Ga0209129_1000057
371 Ga0209565_1000023
372 Ga0209565_1000034
373 Ga0209565_1005135
374 Ga0209673_1000039
375 Ga0209673_1000047
376 Ga0209130_1008238
377 Ga0209675_1000016
378 Ga0209675_1000023
379 Ga0209676_1000027
380 Ga0209676_1000037
381 Ga0209676_1000160
382 Ga0209676_1000338
383 Ga0209025_1000013
384 Ga0209025_1000023
385 Ga0209564_1000066
386 Ga0209564_1000194
387 Ga0209758_1000014
388 Ga0209758_1019543
389 Ga0209050_1000352
390 Ga0209050_1000372
391 Ga0209256_1000048
392 Ga0209256_1002334
393 Ga0209256_1012506
394 Ga0209051_1005931
395 Ga0209257_1000177
396 Ga0209257_1000383
397 Ga0209257_1006478
398 Ga0207713_1000274
399 Ga0207647_10003931
400 Ga0207707_10023848
401 Ga0207657_10015305
402 Ga0207694_10027045
403 Ga0207664_10000021
404 Ga0207690_10007879
405 Ga0207690_10012977
406 Ga0207706_10103252
407 Ga0207709_10006003
408 Ga0207667_10031630
409 Ga0207668_10104972
410 Ga0207639_10010440
411 Ga0207639_10057943
412 Ga0207674_10011473
413 Ga0207674_10017268
414 Ga0207683_10168126
415 Ga0209371_1000007
416 Ga0209371_1000043
417 Ga0209983_1004341
418 Ga0209983_1011053
419 Ga0209974_10001178
420 Ga0209974_10005909
421 Ga0209974_10008659
422 Ga0268256_1000008
423 Ga0268256_1000044
424 Ga0316176_1081678
425 Ga0316181_1053269
426 Ga0307408_100059066
427 Ga0307408_100066687
428 Ga0307408_100099642
429 Ga0307405_10002851
430 Ga0307405_10019515
431 Ga0307405_10090266
432 Ga0307413_10018025
433 Ga0307413_10021609
434 Ga0307413_10029891
435 Ga0307413_10037581
436 Ga0307413_10049418
437 Ga0307410_10017904
438 Ga0307410_10023174
439 Ga0307410_10068387
440 Ga0307410_10077901
441 Ga0307410_10194642
442 Ga0307406_10000978
443 Ga0307406_10001980
444 Ga0307406_10041756
445 Ga0307406_10138838
446 Ga0307407_10013420
447 Ga0307412_10128872
448 Ga0307409_100029929
449 Ga0307409_100030765
450 Ga0307409_100049721
451 Ga0307409_100122615
452 Ga0307416_100015907
453 Ga0307416_100027547
454 Ga0307416_100083220
455 Ga0307414_10000095
456 Ga0307414_10001423
457 Ga0307414_10004416
458 Ga0307414_10005160
459 Ga0307414_10050290
460 Ga0307414_10113382
461 Ga0307411_10008491
462 Ga0307411_10025746
463 Ga0307411_10037796
464 Ga0307411_10070937
465 Ga0307415_100006043
466 Ga0307415_100099873
467 Ga0307415_100238217
468 Ga0237819_00143
469 Ga0237819_05931
470 Ga0439447_000889
471 Ga0451789_0780307
472 Ga0451793_0510014
473 Ga0451800_0194332
474 Ga0451806_154522
475 Ga0451804_1156008
476 Ga0451807_1701970
477 Ga0439432_005174
478 Ga0439432_007691
479 Ga0439432_021810
480 Ga0439449_0008964
481 Ga0439449_0015886
482 Ga0439462_0019046
483 Ga0439462_0028404
484 Ga0450912_000145
485 Ga0450920_016337
486 Ga0495638_0108714
487 Ga0495584_0017867
488 Ga0495610_0000756
489 Ga0495643_0088760
490 Ga0495621_0028113
491 Ga0495633_0003633
492 Ga0495656_0043735
493 Ga0495668_0002652
494 Ga0495668_0043055
495 Ga0495625_0018954
496 Ga0495625_0104900
497 Ga0495670_0047635
498 Ga0495671_0005490
499 Ga0495660_0017968
500 Ga0495636_0053595
501 Ga0495672_0001225
502 Ga0495686_0012744
503 Ga0496116_0002306
504 Ga0496117_0000822
505 Ga0496118_0011750
506 Ga0496119_0000800
507 Ga0496119_0002532
508 Ga0496120_0000970
509 Ga0496120_0002292
510 Ga0496122_0000241
511 Ga0496122_0001795
512 Ga0496122_0002320
513 Ga0496123_0000453
514 Ga0496123_0000960
515 Ga0496123_0001110
516 Ga0496123_0037575
517 Ga0496124_0000460
518 Ga0496124_0001341
519 Ga0496124_0065670
520 Ga0496124_0091568
521 Ga0496125_0005552
522 Ga0495678_024247
523 Ga0501299_005360
524 Ga0501032_0028834
525 Ga0501034_0001242
526 Ga0501034_0001478
527 Ga0501034_0011631
528 Ga0501034_0030778
529 Ga0501034_0039295
530 Ga0501038_0083030
531 Ga0501038_0091394
532 Ga0501043_0066246
533 Ga0501068_0046519
534 Ga0501070_0101313
535 Ga0501223_000657
536 Ga0501224_000008
537 Ga0501257_000100
538 Ga0501225_0000030
539 Ga0501080_0065705
540 Ga0501262_001324
541 Ga0501280_001425
542 Ga0501044_0058525
543 Ga0501044_0293481
544 Ga0501226_000042
545 nmdc:mga00v17_1287_c1
546 nmdc:mga00v17_129045_c1
547 nmdc:mga00v17_42093_c1
548 nmdc:mga09592_15402_c1
549 nmdc:mga08y16_652_c1
550 nmdc:mga08y16_89526_c1
551 nmdc:mga0a205_91075_c1
552 Ga0500643_001406
553 Ga0500634_0000022
554 2547503442
555 2572254423
556 2578457185
557 2643816756
558 2643905251
559 2643914937
560 2643938564
561 2643973788
562 2644077689
563 2644528295
564 2644693996
565 2747950259
566 2748016859
567 2765580310
568 2816518664
569 2819661096
570 2842395545
571 2842759159
572 2852652320
573 2852686950
574 2857445146
575 2874222982
576 2885428405
577 2895499420
578 2895512441
579 2895522452
580 2895525776
581 2896430431
582 2919092825
583 2919131272
584 2919137431
585 2919712654
586 2923517366
587 2928499197
588 2929196512
589 2931383555
590 2937614950
591 2939589627
592 2939614589
593 2939624308
594 2939630259
595 2941478936
596 2941493096
597 2961049747
598 2961066578
599 2974307818
600 2977248537
601 2984516976
602 2987608583
603 2995953161
604 8021626242
605 8021627699
606 8021651290

MSA Aligner

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Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF00375

SDF

Sodium:dicarboxylate symporter family

13

448

0.97

Structural Annotation

Top 5 Hits

ID Description Score Start End
7ngh-assembly1.cif.gz_C structure of glutamate transporter homologue in complex with sybody 0.8449 27 428
6uwl-assembly1.cif.gz_A gltph in complex with l-aspartate and sodium ions in intermediate outward-facing state 0.8346 27 424
3v8g-assembly2.cif.gz_F crystal structure of an asymmetric trimer of a glutamate transporter homologue (gltph) 0.8223 27 425
7awl-assembly1.cif.gz_A structure of the thermostabilized eaat1 cryst-ii mutant in complex with barium and the allosteric inhibitor ucph101 0.8222 20 427
6wyj-assembly1.cif.gz_A cryo-em structure of the gltph l152c-g321c mutant in the intermediate state 0.8145 27 424
ID Description Score Start End Superfamily
af_P21345_1_417_1.10.3860.10 Mainly Alpha;Orthogonal Bundle;Proton glutamate symport protein;Sodium:dicarboxylate symporter 0.8114 27 427 1.10.3860.10
af_P0A830_1_408_1.10.3860.10 Mainly Alpha;Orthogonal Bundle;Proton glutamate symport protein;Sodium:dicarboxylate symporter 0.8083 27 428 1.10.3860.10
af_P71906_20_424_1.10.3860.10 Mainly Alpha;Orthogonal Bundle;Proton glutamate symport protein;Sodium:dicarboxylate symporter 0.8044 24 427 1.10.3860.10
5e9sA00 Mainly Alpha;Orthogonal Bundle;Proton glutamate symport protein;Sodium:dicarboxylate symporter 0.7937 27 427 1.10.3860.10
af_Q2G0Z4_33_460_1.10.3860.10 Mainly Alpha;Orthogonal Bundle;Proton glutamate symport protein;Sodium:dicarboxylate symporter 0.7932 31 427 1.10.3860.10
ID Description Score Start End GO Terms
AF-A0A520Y754-F1-model_v4 Cation:dicarboxylase symporter family transporter 0.9666 294 424 GO:0015293
GO:0016020
AF-A0A5C2EP66-F1-model_v4 deleted 0.9575 286 429
AF-X1AT06-F1-model_v4 Uncharacterized protein 0.9375 275 427 GO:0015293
GO:0016020
GO:1902475
AF-A0A1A7W810-F1-model_v4 Amino acid transporter 0.9334 278 429 GO:0005313
GO:0005886
GO:0015175
GO:0015501
AF-A0A1I7UFW2-F1-model_v4 Amino acid transporter 0.9281 286 427 GO:0005313
GO:0005886
GO:0015175
GO:0015501

Map