F397245

General Info

Members Datasets Scaffolds Average Seq Length
303 225 606 380

Family's Representative Sequence

Representative Sequence 3300048912|Ga0496109_0131733|Ga0496109_0131733_1064_2314
Length 416
Sequence MSSAASLLEGQGSEGAIARTTGLPLDLLKRRVSQRRQMLFVQAVSCSLNTLVLLIYNYAGTISIVIPSVYFLSGMGLIGFFVVLSEAHFSDRFEDHYLTVFQVGGHIALQLLFLLAAPEIGYAFLSVVFLIFGFGALRMTSSQATIAWTLTMVGLVPIFLLTKMQIGMPVATDIERFAAMLCYVLTIGQCAFVGLYGSSLRKMLYDRSSALKEANRRIEELAELDELTGSLNRRCIMRILDEEVLRAHRTGGSCSIALIDLDWFKRINDTYGHPTGDEVLRTFAITVFANIRGIDRFGRFGGEEFLLVLPDTPHDTAARILERLRAIIADLDWSALSQGMRVTVSAGLATLRSSENPDAILARADRALYQAKARGRNRIASSHHPLKDEEAVAANKPVTPGQSHEFETRPNIRTPA

Samples

Sample ID Description Type Environment
1 3300048912 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8w unlabeled Metagenome Rhizoplane
2 3300005329 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG Metagenome Rhizosphere
3 3300005336 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG Metagenome Rhizosphere
4 3300005355 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG Metagenome Rhizosphere
5 3300005365 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3H metaG Metagenome Rhizosphere
6 3300005366 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG Metagenome Rhizosphere
7 3300005436 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG Metagenome Rhizosphere
8 3300005439 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG Metagenome Rhizosphere
9 3300005455 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG Metagenome Rhizosphere
10 3300005456 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG Metagenome Rhizosphere
11 3300005458 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG Metagenome Rhizosphere
12 3300005530 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG Metagenome Rhizosphere
13 3300005535 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG Metagenome Rhizosphere
14 3300005539 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 Metagenome Rhizosphere
15 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
16 3300005577 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 Metagenome Rhizosphere
17 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
18 3300005616 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 Metagenome Rhizosphere
19 3300005719 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 Metagenome Rhizosphere
20 3300005834 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C1-2 Metagenome Rhizosphere
21 3300005840 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2 Metagenome Rhizosphere
22 3300005841 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 Metagenome Rhizosphere
23 3300005983 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S2T1R1 Metagenome Rhizosphere
24 3300005985 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
25 3300006038 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 Metagenome Endosphere
26 3300006042 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-3 Metagenome Endosphere
27 3300006048 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-3 Metagenome Endosphere
28 3300006175 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG Metagenome Rhizosphere
29 3300006186 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-4 Metagenome Endosphere
30 3300006353 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 Metagenome Endosphere
31 3300006881 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 Metagenome Rhizosphere
32 3300007788 Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_2 Metagenome Rhizosphere
33 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
34 3300009101 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG Metagenome Rhizosphere
35 3300009174 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG Metagenome Rhizosphere
36 3300009177 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG Metagenome Rhizosphere
37 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
38 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
39 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
40 3300011119 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG Metagenome Rhizosphere
41 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
42 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
43 3300013296 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG Metagenome Rhizosphere
44 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
45 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
46 3300014325 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG Metagenome Rhizosphere
47 3300014326 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG Metagenome Rhizosphere
48 3300014968 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG Metagenome Rhizosphere
49 3300014969 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG Metagenome Rhizosphere
50 3300017792 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG Metagenome Rhizosphere
51 3300021384 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 Metagenome Unclassified
52 3300025295 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMF_r2 (SPAdes) (version 3) Metagenome Endosphere
53 3300025297 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF (SPAdes) (version 2) Metagenome Endosphere
54 3300025321 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C1-2 (SPAdes) (version 2) Metagenome Rhizosphere
55 3300025900 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
56 3300025904 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2 (SPAdes) (version 2) Metagenome Rhizosphere
57 3300025906 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
58 3300025907 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
59 3300025909 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
60 3300025912 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
61 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
62 3300025914 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
63 3300025915 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
64 3300025917 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
65 3300025919 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
66 3300025923 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
67 3300025924 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
68 3300025928 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
69 3300025931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
70 3300025932 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
71 3300025934 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
72 3300025942 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes) (version 2) Metagenome Rhizosphere
73 3300025944 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
74 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
75 3300025981 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 (SPAdes) (version 2) Metagenome Rhizosphere
76 3300026041 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes) (version 2) Metagenome Rhizosphere
77 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
78 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
79 3300026118 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes) (version 2) Metagenome Rhizosphere
80 3300026121 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
81 3300026142 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes) (version 2) Metagenome Rhizosphere
82 3300027512 Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_2 (SPAdes) (version 2) Metagenome Rhizosphere
83 3300028380 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes) (version 2) Metagenome Rhizosphere
84 3300028786 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 23_EM Metagenome Unclassified
85 3300031241 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-14-20 metaG Metagenome Rhizosphere
86 3300031507 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 10_EM Metagenome Unclassified
87 3300031730 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 19_EM Metagenome Unclassified
88 3300033180 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 12_EM Metagenome Unclassified
89 3300034816 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_NoN_3 Metagenome Rhizosphere
90 3300035086 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_4 Metagenome Rhizosphere
91 3300035113 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_12 Metagenome Rhizosphere
92 3300035115 Populus rhizosphere microbial communities from soil in West Virginia, United States - WV94_WV_NoN_11 Metagenome Rhizosphere
93 3300035117 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_N_1 Metagenome Rhizosphere
94 3300035118 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_N_2 Metagenome Rhizosphere
95 3300035119 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_N_4 Metagenome Rhizosphere
96 3300035120 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_N_5 Metagenome Rhizosphere
97 3300035172 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_N_3 Metagenome Rhizosphere
98 3300035410 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_12 Metagenome Rhizosphere
99 3300035691 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_NoN_4 Metagenome Rhizosphere
100 3300035692 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_11 Metagenome Rhizosphere
101 3300035724 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_1 Metagenome Rhizosphere
102 3300035725 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_8 Metagenome Rhizosphere
103 3300036401 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_16 Metagenome Rhizosphere
104 3300037068 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_16 Metagenome Rhizosphere
105 3300037312 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_B SG_2 Metagenome Rhizosphere
106 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
107 3300037853 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 v2 Metagenome Unclassified
108 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
109 3300039437 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 v2 Metagenome Unclassified
110 3300045976 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA4R Metagenome Rhizosphere
111 3300046454 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-198-CL2_38_5 rhizosphere Metagenome Rhizosphere
112 3300046455 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-307-CL1_26_33 rhizosphere Metagenome Rhizosphere
113 3300046459 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL3_88_32 rhizosphere Metagenome Rhizosphere
114 3300046460 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co3_31_37 rhizosphere Metagenome Rhizosphere
115 3300046461 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-845-CL3_80_19 rhizosphere Metagenome Rhizosphere
116 3300046463 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-866-CL3_75_7 rhizosphere Metagenome Rhizosphere
117 3300046472 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL1_35_33 rhizosphere Metagenome Rhizosphere
118 3300046473 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL3_85_26 rhizosphere Metagenome Rhizosphere
119 3300046475 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-845-CL1_31_22 rhizosphere Metagenome Rhizosphere
120 3300046476 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-905-CL1_32_20 rhizosphere Metagenome Rhizosphere
121 3300046499 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-234-CL1_24_28 rhizosphere Metagenome Rhizosphere
122 3300046507 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co2_62_14 rhizosphere Metagenome Rhizosphere
123 3300046511 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-331-CL2_55_18 rhizosphere Metagenome Rhizosphere
124 3300046512 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co2_50_17 rhizosphere Metagenome Rhizosphere
125 3300046514 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-360-CL2_44_14 rhizosphere Metagenome Rhizosphere
126 3300046515 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co2_62_25 rhizosphere Metagenome Rhizosphere
127 3300046516 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL1_35_3 rhizosphere Metagenome Rhizosphere
128 3300046517 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-470-CL2_38_23 rhizosphere Metagenome Rhizosphere
129 3300046524 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co1_12_9 rhizosphere Metagenome Rhizosphere
130 3300046529 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-866-CL2_50_11 rhizosphere Metagenome Rhizosphere
131 3300046530 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-866-Co1_10_5 rhizosphere Metagenome Rhizosphere
132 3300046531 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL2_41_30 rhizosphere Metagenome Rhizosphere
133 3300046533 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-845-CL2_37_16 rhizosphere Metagenome Rhizosphere
134 3300046536 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL2_62_7 rhizosphere Metagenome Rhizosphere
135 3300046543 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL1_28_5 rhizosphere Metagenome Rhizosphere
136 3300046557 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL1_25_34 rhizosphere Metagenome Rhizosphere
137 3300046559 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-4579-CL2_50_20 rhizosphere Metagenome Rhizosphere
138 3300046642 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL2_42_16 rhizosphere Metagenome Rhizosphere
139 3300046663 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL3_77_6 rhizosphere Metagenome Rhizosphere
140 3300046674 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL3_93_10 rhizosphere Metagenome Rhizosphere
141 3300046675 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-904-CL2_57_20 rhizosphere Metagenome Rhizosphere
142 3300046678 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-258-CL1_34_5 rhizosphere Metagenome Rhizosphere
143 3300046679 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL2_50_4 rhizosphere Metagenome Rhizosphere
144 3300046680 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL2_38_7 rhizosphere Metagenome Rhizosphere
145 3300046681 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL3_83_27 rhizosphere Metagenome Rhizosphere
146 3300046683 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-904-CL3_91_3 rhizosphere Metagenome Rhizosphere
147 3300046690 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL3_88_3 rhizosphere Metagenome Rhizosphere
148 3300046691 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co3_14_51 rhizosphere Metagenome Rhizosphere
149 3300046809 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-258-CL2_67_23 rhizosphere Metagenome Rhizosphere
150 3300047315 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL2_39_29 rhizosphere Metagenome Rhizosphere
151 3300047317 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-307-CL2_57_8 rhizosphere Metagenome Rhizosphere
152 3300047319 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL1_34_16 rhizosphere Metagenome Rhizosphere
153 3300047320 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co2_68_28 rhizosphere Metagenome Rhizosphere
154 3300047322 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - SKWA-24-3-CL2_69_25 rhizosphere Metagenome Rhizosphere
155 3300047444 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL2_56_12 rhizosphere Metagenome Rhizosphere
156 3300047471 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - SKWD-24-1-CL2_58_25 rhizosphere Metagenome Rhizosphere
157 3300047472 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co2_54_22 rhizosphere Metagenome Rhizosphere
158 3300047673 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-198-CL3_81_33 rhizosphere Metagenome Rhizosphere
159 3300048088 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL2_56_7 rhizosphere Metagenome Rhizosphere
160 3300048903 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7v unlabeled Metagenome Rhizoplane
161 3300048904 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7w unlabeled Metagenome Rhizoplane
162 3300048905 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1c N15 Metagenome Rhizoplane
163 3300048906 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1d N15 Metagenome Rhizoplane
164 3300048907 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2c N15 Metagenome Rhizoplane
165 3300048908 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2d N15 Metagenome Rhizoplane
166 3300048909 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3c N15 Metagenome Rhizoplane
167 3300048910 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3d N15 Metagenome Rhizoplane
168 3300048911 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8v unlabeled Metagenome Rhizoplane
169 3300048913 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4c N15 Metagenome Rhizoplane
170 3300048915 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5c N15 Metagenome Rhizoplane
171 3300048916 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5d N15 Metagenome Rhizoplane
172 3300048918 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6d N15 Metagenome Rhizoplane
173 3300048919 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_7x unlabeled Metagenome Unclassified
174 3300048923 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2f N15 Metagenome Unclassified
175 3300048924 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_3e N15 Metagenome Unclassified
176 3300048925 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8x unlabeled Metagenome Unclassified
177 3300048928 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_5e N15 Metagenome Unclassified
178 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
179 3300049570 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_03 Metagenome Rhizosphere
180 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
181 3300049589 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_01 Metagenome Rhizosphere
182 3300049590 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_02 Metagenome Rhizosphere
183 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
184 3300049824 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_03 Metagenome Rhizosphere
185 3300050491 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 re-annotation Metagenome Endosphere
186 3300050492 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 re-annotation Metagenome Endosphere
187 3300050494 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 re-annotation Metagenome Endosphere
188 3300050516 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-4 re-annotation Metagenome Endosphere
189 3300053077 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL1_33_12 rhizosphere Metagenome Rhizosphere
190 3300053078 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL1_27_10 rhizosphere Metagenome Rhizosphere
191 3300053084 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-234-CL2_65_22 rhizosphere Metagenome Rhizosphere
192 3300053085 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-360-CL3_72_12 rhizosphere Metagenome Rhizosphere
193 3300053088 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co1_37_5 endosphere Metagenome Endosphere
194 3300053089 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co1_12_7 endosphere Metagenome Endosphere
195 3300053093 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co2_62_24 endosphere Metagenome Endosphere
196 3300053094 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-234-CL1_24_28 endosphere Metagenome Endosphere
197 3300053102 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL3_85_26 endosphere Metagenome Endosphere
198 3300053104 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co2_41_23 endosphere Metagenome Endosphere
199 3300053119 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL1_25_34 endosphere Metagenome Endosphere
200 3300053125 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL1_28_5 endosphere Metagenome Endosphere
201 3300053130 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co2_44_8 endosphere Metagenome Endosphere
202 3300053131 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co3_35_48 endosphere Metagenome Endosphere
203 3300053134 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co1_7_5 endosphere Metagenome Endosphere
204 3300053136 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL2_62_7 endosphere Metagenome Endosphere
205 3300053139 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co1_23_3 endosphere Metagenome Endosphere
206 3300053142 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co1_31_6 endosphere Metagenome Endosphere
207 3300053145 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL3_84_27 endosphere Metagenome Endosphere
208 3300053150 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-470-CL2_38_23 endosphere Metagenome Endosphere
209 3300053151 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co1_22_4 endosphere Metagenome Endosphere
210 3300053153 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 endosphere Metagenome Endosphere
211 3300053154 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL2_38_7 endosphere Metagenome Endosphere
212 3300053156 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 endosphere Metagenome Endosphere
213 3300053162 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-4579-CL1_25_23 endosphere Metagenome Endosphere
214 3300053177 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL1_23_5 endosphere Metagenome Endosphere
215 3300053178 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL2_41_30 endosphere Metagenome Endosphere
216 3300053724 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co3_21_62 endosphere Metagenome Endosphere
217 3300055283 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-4579-CL1_25_23_RD_R2 endosphere Metagenome Endosphere
218 2513237098 Bradyrhizobium elkanii WSM2783 Isolate Nodule
219 2602042107 Bradyrhizobium sp. NFR13 Isolate Rhizoplane
220 2857524615 Tardiphaga sp. R-73074 Isolate Unclassified
221 2885383462 Bradyrhizobium sp. Leo170 Isolate Unclassified
222 2893066018 Tardiphaga sp. P9-11 Isolate Unclassified
223 2903768456 Bradyrhizobium sp. Leo121 Isolate Unclassified
224 2919073203 Tardiphaga robiniae 1155 Isolate Unclassified
225 8056681323 Bradyrhizobium cenepequi CNPSo 4026 Isolate Nodule

Type Distribution

Type Percentage (%)
Metagenomes 97.36
Metatranscriptomes 0
Isolates 2.64

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 14.52
Nodule 0.66
Rhizoplane 7.59
Rhizosphere 67.99
Stem 0
Stem Tuber 0
Unclassified 0

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0496109_0131733 3300048912 Bacteria 2334
2 Ga0070683_100042655 3300005329 Bacteria 4177
3 Ga0070680_100013751 3300005336 Bacteria 6313
4 Ga0070680_100069971 3300005336 Bacteria 2882
5 Ga0070671_100168864 3300005355 Bacteria 1850
6 Ga0070688_100151030 3300005365 Bacteria 1588
7 Ga0070659_100018587 3300005366 Bacteria 5246
8 Ga0070659_100052849 3300005366 Bacteria 3196
9 Ga0070713_100017717 3300005436 Bacteria 5397
10 Ga0070711_100133356 3300005439 Bacteria 1853
11 Ga0070663_100074256 3300005455 Bacteria 2482
12 Ga0070678_100148989 3300005456 Bacteria 1882
13 Ga0070678_100193998 3300005456 Bacteria 1672
14 Ga0070681_10026475 3300005458 Bacteria 5828
15 Ga0070679_100025312 3300005530 Bacteria 5822
16 Ga0070684_100048422 3300005535 Bacteria 3687
17 Ga0068853_100051880 3300005539 Bacteria 3532
18 Ga0068853_100090217 3300005539 Bacteria 2693
19 Ga0068853_100178393 3300005539 Bacteria 1925
20 Ga0068855_100008904 3300005563 Bacteria 12132
21 Ga0068855_100014370 3300005563 Bacteria 9532
22 Ga0068857_100017616 3300005577 Bacteria 6263
23 Ga0068856_100005538 3300005614 Bacteria 12434
24 Ga0068852_100025773 3300005616 Bacteria 4769
25 Ga0068861_100100855 3300005719 Bacteria 2295
26 Ga0068851_10022898 3300005834 Bacteria 3049
27 Ga0068870_10066998 3300005840 Bacteria 1946
28 Ga0068863_100458529 3300005841 Bacteria 1251
29 Ga0081540_1000575 3300005983 Bacteria 35551
30 Ga0081539_10000113 3300005985 Bacteria 189418
31 Ga0075365_10099289 3300006038 Bacteria 1992
32 Ga0075365_10130885 3300006038 Bacteria 1736
33 Ga0075368_10036768 3300006042 Bacteria 1913
34 Ga0075363_100049946 3300006048 Bacteria 2228
35 Ga0070712_100092261 3300006175 Bacteria 2221
36 Ga0075369_10019697 3300006186 Bacteria 2757
37 Ga0075370_10063253 3300006353 Bacteria 2109
38 Ga0068865_100125894 3300006881 Bacteria 1912
39 Ga0099795_10020018 3300007788 Bacteria 2174
40 Ga0105240_10013705 3300009093 Bacteria 11109
41 Ga0105240_10109911 3300009093 Bacteria 3337
42 Ga0105247_10056080 3300009101 Bacteria 2433
43 Ga0105241_10261900 3300009174 Bacteria 1470
44 Ga0105248_10033077 3300009177 Bacteria 5775
45 Ga0105237_10032875 3300009545 Bacteria 5252
46 Ga0105237_10074571 3300009545 Bacteria 3385
47 Ga0105238_10008473 3300009551 Bacteria 10294
48 Ga0105238_10014012 3300009551 Bacteria 8108
49 Ga0105239_10013269 3300010375 Bacteria 9155
50 Ga0105239_10166803 3300010375 Bacteria 2463
51 Ga0105239_10253782 3300010375 Bacteria 1976
52 Ga0105246_10160797 3300011119 Bacteria 1710
53 Ga0157370_10082605 3300013104 Bacteria 3022
54 Ga0157370_10161858 3300013104 Bacteria 2082
55 Ga0157369_10003682 3300013105 Bacteria 18215
56 Ga0157369_10004083 3300013105 Bacteria 17280
57 Ga0157369_10016835 3300013105 Bacteria 8214
58 Ga0157374_10013080 3300013296 Bacteria 7239
59 Ga0157372_10022405 3300013307 Bacteria 6835
60 Ga0157375_10122758 3300013308 Bacteria 2709
61 Ga0163163_10079675 3300014325 Bacteria 3274
62 Ga0157380_10246208 3300014326 Bacteria 1615
63 Ga0157379_10088152 3300014968 Bacteria 2782
64 Ga0157376_10350515 3300014969 Bacteria 1413
65 Ga0163161_10041488 3300017792 Bacteria 3306
66 Ga0213876_10056136 3300021384 Bacteria 2079
67 Ga0209564_1006201 3300025295 Bacteria 6535
68 Ga0209758_1013491 3300025297 Bacteria 4448
69 Ga0207656_10019277 3300025321 Bacteria 2697
70 Ga0207710_10056692 3300025900 Bacteria 1768
71 Ga0207647_10054826 3300025904 Bacteria 2451
72 Ga0207699_10117580 3300025906 Bacteria 1714
73 Ga0207645_10079539 3300025907 Bacteria 2101
74 Ga0207705_10068934 3300025909 Bacteria 2561
75 Ga0207707_10005595 3300025912 Bacteria 10995
76 Ga0207707_10040895 3300025912 Bacteria 4048
77 Ga0207707_10041290 3300025912 Bacteria 4029
78 Ga0207695_10020428 3300025913 Bacteria 7586
79 Ga0207671_10031938 3300025914 Bacteria 3921
80 Ga0207671_10046180 3300025914 Bacteria 3222
81 Ga0207693_10008179 3300025915 Bacteria 8569
82 Ga0207660_10017722 3300025917 Bacteria 4737
83 Ga0207657_10006063 3300025919 Bacteria 12571
84 Ga0207681_10058708 3300025923 Bacteria 2635
85 Ga0207694_10023198 3300025924 Bacteria 4711
86 Ga0207694_10112129 3300025924 Bacteria 2170
87 Ga0207700_10102609 3300025928 Bacteria 2285
88 Ga0207644_10141831 3300025931 Bacteria 1851
89 Ga0207690_10011516 3300025932 Bacteria 5284
90 Ga0207686_10024893 3300025934 Bacteria 3475
91 Ga0207689_10142403 3300025942 Bacteria 1975
92 Ga0207661_10011409 3300025944 Bacteria 6438
93 Ga0207667_10007332 3300025949 Bacteria 13276
94 Ga0207640_10082398 3300025981 Bacteria 2203
95 Ga0207639_10056435 3300026041 Bacteria 3010
96 Ga0207639_10163643 3300026041 Bacteria 1877
97 Ga0207702_10012908 3300026078 Bacteria 6948
98 Ga0207702_10133763 3300026078 Bacteria 2235
99 Ga0207674_10017435 3300026116 Bacteria 7836
100 Ga0207675_100048738 3300026118 Bacteria 3953
101 Ga0207683_10076755 3300026121 Bacteria 2958
102 Ga0207698_10065550 3300026142 Bacteria 2853
103 Ga0209179_1008293 3300027512 Bacteria 1747
104 Ga0268265_10347335 3300028380 Bacteria 1353
105 Ga0307517_10001507 3300028786 Bacteria 38891
106 Ga0265325_10012793 3300031241 Bacteria 4788
107 Ga0307509_10126766 3300031507 Bacteria 2517
108 Ga0307516_10145472 3300031730 Bacteria 2136
109 Ga0307510_10008055 3300033180 Bacteria 12542
110 Ga0307510_10019718 3300033180 Bacteria 7900
111 Ga0373930_0006688 3300034816 Bacteria 1960
112 Ga0373934_0005198 3300035086 Bacteria 4815
113 Ga0373936_0002271 3300035113 Bacteria 7188
114 Ga0373941_0017888 3300035115 Bacteria 1950
115 Ga0373953_0001814 3300035117 Bacteria 6309
116 Ga0373953_0058669 3300035117 Bacteria 1569
117 Ga0373954_0001141 3300035118 Bacteria 10672
118 Ga0373954_0030722 3300035118 Bacteria 2478
119 Ga0373956_0001770 3300035119 Bacteria 8897
120 Ga0373957_0003776 3300035120 Bacteria 4535
121 Ga0373955_0004475 3300035172 Bacteria 6185
122 Ga0373924_0002637 3300035410 Bacteria 6054
123 Ga0373924_0002945 3300035410 Bacteria 5782
124 Ga0373931_0003029 3300035691 Bacteria 7506
125 Ga0373935_0000681 3300035692 Bacteria 17958
126 Ga0373935_0072278 3300035692 Bacteria 2227
127 Ga0373933_0038299 3300035724 Bacteria 2817
128 Ga0373947_0000118 3300035725 Bacteria 39817
129 Ga0373937_0007299 3300036401 Bacteria 9566
130 Ga0373937_0027073 3300036401 Bacteria 5182
131 Ga0373925_0024489 3300037068 Bacteria 4407
132 Ga0395899_0031706 3300037312 Bacteria 3972
133 Ga0395898_0031437 3300037466 Bacteria 5304
134 Ga0436364_1294894 3300037853 Bacteria 1790
135 Ga0395901_0145638 3300038443 Bacteria 2490
136 Ga0395901_0149040 3300038443 Bacteria 2459
137 Ga0436365_1177325 3300039437 Bacteria 1552
138 Ga0436365_1543056 3300039437 Bacteria 1474
139 Ga0466967_0338244 3300045976 Bacteria 1455
140 Ga0495592_0022621 3300046454 Bacteria 4782
141 Ga0495592_0035078 3300046454 Bacteria 3781
142 Ga0495603_0000053 3300046455 Bacteria 49373
143 Ga0495603_0008915 3300046455 Bacteria 6064
144 Ga0495629_0016234 3300046459 Bacteria 5344
145 Ga0495629_0177207 3300046459 Bacteria 1478
146 Ga0495638_0029215 3300046460 Bacteria 3555
147 Ga0495638_0157817 3300046460 Bacteria 1311
148 Ga0495641_0001147 3300046461 Bacteria 22816
149 Ga0495653_0033029 3300046463 Bacteria 4103
150 Ga0495580_0001877 3300046472 Bacteria 18497
151 Ga0495582_0000186 3300046473 Bacteria 34006
152 Ga0495639_0000078 3300046475 Bacteria 46048
153 Ga0495662_0001412 3300046476 Bacteria 11898
154 Ga0495594_0000103 3300046499 Bacteria 39690
155 Ga0495606_0004866 3300046507 Bacteria 13163
156 Ga0495608_0003659 3300046511 Bacteria 11051
157 Ga0495610_0018410 3300046512 Bacteria 3947
158 Ga0495618_0019682 3300046514 Bacteria 4154
159 Ga0495620_0059663 3300046515 Bacteria 1594
160 Ga0495628_0102142 3300046516 Bacteria 2212
161 Ga0495630_0003505 3300046517 Bacteria 10910
162 Ga0495648_0017481 3300046524 Bacteria 5123
163 Ga0495648_0025071 3300046524 Bacteria 4045
164 Ga0495648_0117043 3300046524 Bacteria 1439
165 Ga0495652_0019338 3300046529 Bacteria 6067
166 Ga0495652_0151565 3300046529 Bacteria 1811
167 Ga0495654_0069476 3300046530 Bacteria 1672
168 Ga0495665_0000190 3300046531 Bacteria 31563
169 Ga0495640_0001905 3300046533 Bacteria 16627
170 Ga0495640_0040946 3300046533 Bacteria 3240
171 Ga0495640_0132812 3300046533 Bacteria 1610
172 Ga0495587_0001598 3300046536 Bacteria 15082
173 Ga0495587_0012564 3300046536 Bacteria 5325
174 Ga0495645_0006906 3300046543 Bacteria 7887
175 Ga0495645_0010435 3300046543 Bacteria 6511
176 Ga0495622_0078931 3300046557 Bacteria 1515
177 Ga0495667_0003789 3300046559 Bacteria 10155
178 Ga0495634_0001169 3300046642 Bacteria 24315
179 Ga0495634_0024295 3300046642 Bacteria 4254
180 Ga0495635_0000211 3300046663 Bacteria 36892
181 Ga0495635_0000985 3300046663 Bacteria 18760
182 Ga0495588_0001471 3300046674 Bacteria 10111
183 Ga0495657_0002321 3300046675 Bacteria 16025
184 Ga0495599_0000957 3300046678 Bacteria 16146
185 Ga0495623_0013653 3300046679 Bacteria 5264
186 Ga0495646_0016034 3300046680 Bacteria 4755
187 Ga0495647_0000742 3300046681 Bacteria 9676
188 Ga0495658_0000108 3300046683 Bacteria 43771
189 Ga0495624_0000504 3300046690 Bacteria 30575
190 Ga0495670_0002863 3300046691 Bacteria 8521
191 Ga0495600_0006411 3300046809 Bacteria 7161
192 Ga0495600_0016555 3300046809 Bacteria 4681
193 Ga0495581_0000501 3300047315 Bacteria 20012
194 Ga0495581_0163678 3300047315 Bacteria 1301
195 Ga0495604_0006074 3300047317 Bacteria 9585
196 Ga0495604_0010845 3300047317 Bacteria 7237
197 Ga0495674_0000228 3300047319 Bacteria 46998
198 Ga0495674_0014461 3300047319 Bacteria 7387
199 Ga0495674_0030166 3300047319 Bacteria 4933
200 Ga0495672_0084974 3300047320 Bacteria 1754
201 Ga0495680_0006158 3300047322 Bacteria 11190
202 Ga0495680_0022004 3300047322 Bacteria 5326
203 Ga0495675_0001324 3300047444 Bacteria 15012
204 Ga0495675_0069342 3300047444 Bacteria 2226
205 Ga0495684_0015063 3300047471 Bacteria 5954
206 Ga0495684_0015971 3300047471 Bacteria 5782
207 Ga0495686_0005907 3300047472 Bacteria 9536
208 Ga0495686_0051477 3300047472 Bacteria 2584
209 Ga0495593_0002763 3300047673 Bacteria 10557
210 Ga0495593_0002923 3300047673 Bacteria 10287
211 Ga0495602_0008570 3300048088 Bacteria 10678
212 Ga0496100_0212989 3300048903 Bacteria 1414
213 Ga0496101_0012677 3300048904 Bacteria 5634
214 Ga0496101_0173899 3300048904 Bacteria 1656
215 Ga0496102_0054771 3300048905 Bacteria 3638
216 Ga0496103_0083668 3300048906 Bacteria 2009
217 Ga0496104_0048504 3300048907 Bacteria 4003
218 Ga0496105_0006096 3300048908 Bacteria 9227
219 Ga0496105_0030566 3300048908 Bacteria 4413
220 Ga0496106_0267100 3300048909 Bacteria 1369
221 Ga0496107_0006319 3300048910 Bacteria 8142
222 Ga0496107_0024953 3300048910 Bacteria 4231
223 Ga0496108_0167648 3300048911 Bacteria 1899
224 Ga0496108_0233096 3300048911 Bacteria 1601
225 Ga0496109_0041506 3300048912 Bacteria 4167
226 Ga0496109_0137827 3300048912 Bacteria 2281
227 Ga0496110_0060173 3300048913 Bacteria 3349
228 Ga0496110_0182133 3300048913 Bacteria 1907
229 Ga0496112_0017521 3300048915 Bacteria 6731
230 Ga0496112_0127016 3300048915 Bacteria 2520
231 Ga0496113_0112754 3300048916 Bacteria 2118
232 Ga0496115_0078162 3300048918 Bacteria 2692
233 Ga0496116_0010449 3300048919 Bacteria 7775
234 Ga0496120_0045945 3300048923 Bacteria 2526
235 Ga0496121_0000886 3300048924 Bacteria 54049
236 Ga0496121_0002694 3300048924 Bacteria 26563
237 Ga0496121_0013709 3300048924 Bacteria 8688
238 Ga0496121_0039699 3300048924 Bacteria 4141
239 Ga0496122_0089065 3300048925 Bacteria 2112
240 Ga0496125_0000040 3300048928 Bacteria 314478
241 Ga0496125_0005006 3300048928 Bacteria 14960
242 Ga0496125_0008484 3300048928 Bacteria 10752
243 Ga0496126_0017078 3300048929 Bacteria 7237
244 Ga0496126_0017573 3300048929 Bacteria 7125
245 Ga0496126_0021354 3300048929 Bacteria 6322
246 Ga0496126_0086174 3300048929 Bacteria 2768
247 Ga0501033_0068915 3300049570 Bacteria 2600
248 Ga0501047_0082290 3300049581 Bacteria 3094
249 Ga0501073_0051713 3300049589 Bacteria 2878
250 Ga0501074_0067532 3300049590 Bacteria 2571
251 Ga0501044_0234661 3300049823 Bacteria 1780
252 Ga0501045_0029283 3300049824 Bacteria 3980
253 nmdc:mga00v17_236273_c1 3300050491 Bacteria 1184
254 nmdc:mga0yw44_1787_c1 3300050492 Bacteria 8774
255 nmdc:mga0yw44_43345_c1 3300050492 Bacteria 2686
256 nmdc:mga06z11_49836_c1 3300050494 Bacteria 2138
257 nmdc:mga0sz30_2158_c2 3300050516 Bacteria 5492
258 Ga0495601_0020087 3300053077 Bacteria 4077
259 Ga0495601_0047396 3300053077 Bacteria 2705
260 Ga0495612_0008799 3300053078 Bacteria 4093
261 Ga0495612_0021950 3300053078 Bacteria 2560
262 Ga0495595_0046803 3300053084 Bacteria 1993
263 Ga0495619_0012362 3300053085 Bacteria 5374
264 Ga0495619_0018508 3300053085 Bacteria 4418
265 Ga0500644_0015331 3300053088 Bacteria 2182
266 Ga0500581_103065 3300053089 Bacteria 1400
267 Ga0500651_0073715 3300053093 Bacteria 2122
268 Ga0500566_0004766 3300053094 Bacteria 8084
269 Ga0500554_001380 3300053102 Bacteria 4704
270 Ga0500554_010378 3300053102 Bacteria 2268
271 Ga0500556_0000002 3300053104 Bacteria 773626
272 Ga0500595_001406 3300053119 Bacteria 12911
273 Ga0500618_005029 3300053125 Bacteria 4084
274 Ga0500642_0000876 3300053130 Bacteria 8748
275 Ga0500652_000965 3300053131 Bacteria 9504
276 Ga0500658_0009609 3300053134 Bacteria 3565
277 Ga0500559_0000763 3300053136 Bacteria 21093
278 Ga0500559_0026137 3300053136 Bacteria 2485
279 Ga0500568_0001500 3300053139 Bacteria 14911
280 Ga0500568_0006307 3300053139 Bacteria 5972
281 Ga0500577_0000095 3300053142 Bacteria 21049
282 Ga0500577_0033095 3300053142 Bacteria 1824
283 Ga0500586_000083 3300053145 Bacteria 16354
284 Ga0500603_000970 3300053150 Bacteria 6785
285 Ga0500604_0048711 3300053151 Bacteria 1301
286 Ga0500616_0000031 3300053153 Bacteria 415013
287 Ga0500616_0000034 3300053153 Bacteria 396651
288 Ga0500619_033743 3300053154 Bacteria 1577
289 Ga0500622_0005168 3300053156 Bacteria 7911
290 Ga0500638_000402 3300053162 Bacteria 10262
291 Ga0500636_0002288 3300053177 Bacteria 10633
292 Ga0500637_0001971 3300053178 Bacteria 8922
293 Ga0500637_0002381 3300053178 Bacteria 8348
294 Ga0500570_048932 3300053724 Bacteria 2145
295 Ga0500661_000108 3300055283 Bacteria 13387
296 2513676259 2513237098 Bacteria 9902361
297 2603861421 2602042107 Bacteria 6226103
298 2857530196 2857524615 Bacteria 6615449
299 2885388302 2885383462 Bacteria 9473874
300 2893066086 2893066018 Bacteria 6158120
301 2903775897 2903768456 Bacteria 9749579
302 2919079533 2919073203 Bacteria 6531949
303 8056684898 8056681323 Bacteria 8472857
304 Ga0496109_0131733
305 Ga0070683_100042655
306 Ga0070680_100013751
307 Ga0070680_100069971
308 Ga0070671_100168864
309 Ga0070688_100151030
310 Ga0070659_100018587
311 Ga0070659_100052849
312 Ga0070713_100017717
313 Ga0070711_100133356
314 Ga0070663_100074256
315 Ga0070678_100148989
316 Ga0070678_100193998
317 Ga0070681_10026475
318 Ga0070679_100025312
319 Ga0070684_100048422
320 Ga0068853_100051880
321 Ga0068853_100090217
322 Ga0068853_100178393
323 Ga0068855_100008904
324 Ga0068855_100014370
325 Ga0068857_100017616
326 Ga0068856_100005538
327 Ga0068852_100025773
328 Ga0068861_100100855
329 Ga0068851_10022898
330 Ga0068870_10066998
331 Ga0068863_100458529
332 Ga0081540_1000575
333 Ga0081539_10000113
334 Ga0075365_10099289
335 Ga0075365_10130885
336 Ga0075368_10036768
337 Ga0075363_100049946
338 Ga0070712_100092261
339 Ga0075369_10019697
340 Ga0075370_10063253
341 Ga0068865_100125894
342 Ga0099795_10020018
343 Ga0105240_10013705
344 Ga0105240_10109911
345 Ga0105247_10056080
346 Ga0105241_10261900
347 Ga0105248_10033077
348 Ga0105237_10032875
349 Ga0105237_10074571
350 Ga0105238_10008473
351 Ga0105238_10014012
352 Ga0105239_10013269
353 Ga0105239_10166803
354 Ga0105239_10253782
355 Ga0105246_10160797
356 Ga0157370_10082605
357 Ga0157370_10161858
358 Ga0157369_10003682
359 Ga0157369_10004083
360 Ga0157369_10016835
361 Ga0157374_10013080
362 Ga0157372_10022405
363 Ga0157375_10122758
364 Ga0163163_10079675
365 Ga0157380_10246208
366 Ga0157379_10088152
367 Ga0157376_10350515
368 Ga0163161_10041488
369 Ga0213876_10056136
370 Ga0209564_1006201
371 Ga0209758_1013491
372 Ga0207656_10019277
373 Ga0207710_10056692
374 Ga0207647_10054826
375 Ga0207699_10117580
376 Ga0207645_10079539
377 Ga0207705_10068934
378 Ga0207707_10005595
379 Ga0207707_10040895
380 Ga0207707_10041290
381 Ga0207695_10020428
382 Ga0207671_10031938
383 Ga0207671_10046180
384 Ga0207693_10008179
385 Ga0207660_10017722
386 Ga0207657_10006063
387 Ga0207681_10058708
388 Ga0207694_10023198
389 Ga0207694_10112129
390 Ga0207700_10102609
391 Ga0207644_10141831
392 Ga0207690_10011516
393 Ga0207686_10024893
394 Ga0207689_10142403
395 Ga0207661_10011409
396 Ga0207667_10007332
397 Ga0207640_10082398
398 Ga0207639_10056435
399 Ga0207639_10163643
400 Ga0207702_10012908
401 Ga0207702_10133763
402 Ga0207674_10017435
403 Ga0207675_100048738
404 Ga0207683_10076755
405 Ga0207698_10065550
406 Ga0209179_1008293
407 Ga0268265_10347335
408 Ga0307517_10001507
409 Ga0265325_10012793
410 Ga0307509_10126766
411 Ga0307516_10145472
412 Ga0307510_10008055
413 Ga0307510_10019718
414 Ga0373930_0006688
415 Ga0373934_0005198
416 Ga0373936_0002271
417 Ga0373941_0017888
418 Ga0373953_0001814
419 Ga0373953_0058669
420 Ga0373954_0001141
421 Ga0373954_0030722
422 Ga0373956_0001770
423 Ga0373957_0003776
424 Ga0373955_0004475
425 Ga0373924_0002637
426 Ga0373924_0002945
427 Ga0373931_0003029
428 Ga0373935_0000681
429 Ga0373935_0072278
430 Ga0373933_0038299
431 Ga0373947_0000118
432 Ga0373937_0007299
433 Ga0373937_0027073
434 Ga0373925_0024489
435 Ga0395899_0031706
436 Ga0395898_0031437
437 Ga0436364_1294894
438 Ga0395901_0145638
439 Ga0395901_0149040
440 Ga0436365_1177325
441 Ga0436365_1543056
442 Ga0466967_0338244
443 Ga0495592_0022621
444 Ga0495592_0035078
445 Ga0495603_0000053
446 Ga0495603_0008915
447 Ga0495629_0016234
448 Ga0495629_0177207
449 Ga0495638_0029215
450 Ga0495638_0157817
451 Ga0495641_0001147
452 Ga0495653_0033029
453 Ga0495580_0001877
454 Ga0495582_0000186
455 Ga0495639_0000078
456 Ga0495662_0001412
457 Ga0495594_0000103
458 Ga0495606_0004866
459 Ga0495608_0003659
460 Ga0495610_0018410
461 Ga0495618_0019682
462 Ga0495620_0059663
463 Ga0495628_0102142
464 Ga0495630_0003505
465 Ga0495648_0017481
466 Ga0495648_0025071
467 Ga0495648_0117043
468 Ga0495652_0019338
469 Ga0495652_0151565
470 Ga0495654_0069476
471 Ga0495665_0000190
472 Ga0495640_0001905
473 Ga0495640_0040946
474 Ga0495640_0132812
475 Ga0495587_0001598
476 Ga0495587_0012564
477 Ga0495645_0006906
478 Ga0495645_0010435
479 Ga0495622_0078931
480 Ga0495667_0003789
481 Ga0495634_0001169
482 Ga0495634_0024295
483 Ga0495635_0000211
484 Ga0495635_0000985
485 Ga0495588_0001471
486 Ga0495657_0002321
487 Ga0495599_0000957
488 Ga0495623_0013653
489 Ga0495646_0016034
490 Ga0495647_0000742
491 Ga0495658_0000108
492 Ga0495624_0000504
493 Ga0495670_0002863
494 Ga0495600_0006411
495 Ga0495600_0016555
496 Ga0495581_0000501
497 Ga0495581_0163678
498 Ga0495604_0006074
499 Ga0495604_0010845
500 Ga0495674_0000228
501 Ga0495674_0014461
502 Ga0495674_0030166
503 Ga0495672_0084974
504 Ga0495680_0006158
505 Ga0495680_0022004
506 Ga0495675_0001324
507 Ga0495675_0069342
508 Ga0495684_0015063
509 Ga0495684_0015971
510 Ga0495686_0005907
511 Ga0495686_0051477
512 Ga0495593_0002763
513 Ga0495593_0002923
514 Ga0495602_0008570
515 Ga0496100_0212989
516 Ga0496101_0012677
517 Ga0496101_0173899
518 Ga0496102_0054771
519 Ga0496103_0083668
520 Ga0496104_0048504
521 Ga0496105_0006096
522 Ga0496105_0030566
523 Ga0496106_0267100
524 Ga0496107_0006319
525 Ga0496107_0024953
526 Ga0496108_0167648
527 Ga0496108_0233096
528 Ga0496109_0041506
529 Ga0496109_0137827
530 Ga0496110_0060173
531 Ga0496110_0182133
532 Ga0496112_0017521
533 Ga0496112_0127016
534 Ga0496113_0112754
535 Ga0496115_0078162
536 Ga0496116_0010449
537 Ga0496120_0045945
538 Ga0496121_0000886
539 Ga0496121_0002694
540 Ga0496121_0013709
541 Ga0496121_0039699
542 Ga0496122_0089065
543 Ga0496125_0000040
544 Ga0496125_0005006
545 Ga0496125_0008484
546 Ga0496126_0017078
547 Ga0496126_0017573
548 Ga0496126_0021354
549 Ga0496126_0086174
550 Ga0501033_0068915
551 Ga0501047_0082290
552 Ga0501073_0051713
553 Ga0501074_0067532
554 Ga0501044_0234661
555 Ga0501045_0029283
556 nmdc:mga00v17_236273_c1
557 nmdc:mga0yw44_1787_c1
558 nmdc:mga0yw44_43345_c1
559 nmdc:mga06z11_49836_c1
560 nmdc:mga0sz30_2158_c2
561 Ga0495601_0020087
562 Ga0495601_0047396
563 Ga0495612_0008799
564 Ga0495612_0021950
565 Ga0495595_0046803
566 Ga0495619_0012362
567 Ga0495619_0018508
568 Ga0500644_0015331
569 Ga0500581_103065
570 Ga0500651_0073715
571 Ga0500566_0004766
572 Ga0500554_001380
573 Ga0500554_010378
574 Ga0500556_0000002
575 Ga0500595_001406
576 Ga0500618_005029
577 Ga0500642_0000876
578 Ga0500652_000965
579 Ga0500658_0009609
580 Ga0500559_0000763
581 Ga0500559_0026137
582 Ga0500568_0001500
583 Ga0500568_0006307
584 Ga0500577_0000095
585 Ga0500577_0033095
586 Ga0500586_000083
587 Ga0500603_000970
588 Ga0500604_0048711
589 Ga0500616_0000031
590 Ga0500616_0000034
591 Ga0500619_033743
592 Ga0500622_0005168
593 Ga0500638_000402
594 Ga0500636_0002288
595 Ga0500637_0001971
596 Ga0500637_0002381
597 Ga0500570_048932
598 Ga0500661_000108
599 2513676259
600 2603861421
601 2857530196
602 2885388302
603 2893066086
604 2903775897
605 2919079533
606 8056684898

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF00990

GGDEF

Diguanylate cyclase, GGDEF domain

222

378

0.97

Structural Annotation

Top 5 Hits

ID Description Score Start End
6eib-assembly4.cif.gz_D structure of the active ggeef domain of a diguanylate cyclase from vibrio cholerae. 0.8634 232 381
6hbz-assembly1.cif.gz_A bdellovibrio bacteriovorus dgcb full-length 0.8443 241 382
5xge-assembly1.cif.gz_A-2 crystal structure of the pas-ggdef-eal domain of pa0861 from pseudomonas aeruginosa in complex with cyclic di-gmp 0.8414 232 381
3ign-assembly1.cif.gz_A crystal structure of the ggdef domain from marinobacter aquaeolei diguanylate cyclase complexed with c-di-gmp - northeast structural genomics consortium target mqr89a 0.8407 232 381
6tts-assembly1.cif.gz_A crystal structure of the ggdef domain of dgcb from caulobacter crescentus in complex with c-di-gmp 0.84 232 381
ID Description Score Start End Superfamily
6eibC00 Alpha Beta;2-Layer Sandwich;Alpha-Beta Plaits;Reverse transcriptase/Diguanylate cyclase domain 0.8704 232 381 3.30.70.270
af_P38097_675_846_3.30.70.270 Alpha Beta;2-Layer Sandwich;Alpha-Beta Plaits;Reverse transcriptase/Diguanylate cyclase domain 0.8568 232 381 3.30.70.270
af_P77334_235_407_3.30.70.270 Alpha Beta;2-Layer Sandwich;Alpha-Beta Plaits;Reverse transcriptase/Diguanylate cyclase domain 0.8564 232 381 3.30.70.270
2v0nA03 Alpha Beta;2-Layer Sandwich;Alpha-Beta Plaits;Reverse transcriptase/Diguanylate cyclase domain 0.839 232 381 3.30.70.270
af_P76330_387_561_3.30.70.270 Alpha Beta;2-Layer Sandwich;Alpha-Beta Plaits;Reverse transcriptase/Diguanylate cyclase domain 0.8329 232 380 3.30.70.270
ID Description Score Start End GO Terms
AF-A0A349BLW2-F1-model_v4 GGDEF domain-containing protein 0.8693 232 381 GO:0052621
AF-S9SDK4-F1-model_v4 Response regulator 0.8569 240 370
AF-A0A3D1YWN0-F1-model_v4 GGDEF domain-containing protein 0.8534 232 382 GO:0005886
GO:0043709
GO:0052621
GO:1902201
AF-A0A523MBL3-F1-model_v4 EAL domain-containing protein 0.8527 232 381
AF-A0A645G896-F1-model_v4 GGDEF domain-containing protein 0.8512 232 371

Map