F397944

General Info

Members Datasets Scaffolds Average Seq Length
305 177 610 428

Family's Representative Sequence

Representative Sequence 3300005339|Ga0070660_100103400|Ga0070660_1001034001
Length 485
Sequence MSEKTILVWFRNDLRIHDNEILVEAIRKADKVLPVYIFDPFYFRTTRRGTLKTGNFRAKFLLESVQNLRDTLRGLGAELIVRTGSPEQLIPQLAEEYQVAEVYHHREVAFEETDISSKVEAALWKIKLNLKHFIGHTFYHKEDLPFPIKDIPDVFTVFRKKVERDSTIRPCFETPTVIPVPAIANAGEIPTLEQLGLTEPVTDPRAVMHFTGGETHALQRMHAYFWENDRLKTYKATRNGLLGADYSSKFSPWLSVGCLSTRQVYWEVKRYEQARGANDSTYWLIFELLWRDYFRFMFKKYGNQFFKAGGFKGQAPEVAPNQDELFEKWKAGQTGVPFIDANMRELNATGFMSNRGRQNVASFLVHDLQVNWTKGAAYFEEKLLDYSPASNWGNWAYVAGVGNDPRENRHFNIIKQATEFDPKGEYVKTWLPELALVPGKLVHTLFYLSPAELNMYHVEFGVTYPKLVVDTPWKNSSDKSVTLLT

Samples

Sample ID Description Type Environment
1 3300005339 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG Metagenome Rhizosphere
2 3300001904 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2 Metagenome Rhizosphere
3 3300001990 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3 Metagenome Rhizosphere
4 3300002067 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C1 Metagenome Rhizosphere
5 3300002737 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mTSA Metagenome Endosphere
6 3300002772 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mMS Metagenome Endosphere
7 3300002773 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMS Metagenome Endosphere
8 3300002774 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mTSA Metagenome Endosphere
9 3300003187 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mLB Metagenome Endosphere
10 3300003214 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mCL Metagenome Endosphere
11 3300003215 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF Metagenome Endosphere
12 3300003320 Sugarcane root Sample H2 Metagenome Unclassified
13 3300003322 Sugarcane root Sample L2 Metagenome Unclassified
14 3300003323 Sugarcane root Sample H1 Metagenome Unclassified
15 3300003781 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mLB_r2 Metagenome Endosphere
16 3300003791 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 Metagenome Endosphere
17 3300004799 Switchgrass rhizosphere and bulk soil microbial communities from Kellogg Biological Station, Michigan, USA for expression studies - soil CB-3 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
18 3300005288 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Rhizosphere Soil Replicate 2: eDNA_1 v2 (version 2) Metagenome Rhizosphere
19 3300005289 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 v2 (version 2) Metagenome Rhizosphere
20 3300005327 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG Metagenome Rhizosphere
21 3300005328 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG Metagenome Rhizosphere
22 3300005364 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG Metagenome Rhizosphere
23 3300005366 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG Metagenome Rhizosphere
24 3300005455 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG Metagenome Rhizosphere
25 3300005456 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG Metagenome Rhizosphere
26 3300005457 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG Metagenome Rhizosphere
27 3300005458 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG Metagenome Rhizosphere
28 3300005459 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 Metagenome Rhizosphere
29 3300005530 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG Metagenome Rhizosphere
30 3300005539 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 Metagenome Rhizosphere
31 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
32 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
33 3300005577 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 Metagenome Rhizosphere
34 3300005578 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 Metagenome Rhizosphere
35 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
36 3300005616 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 Metagenome Rhizosphere
37 3300006195 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 Metagenome Endosphere
38 3300006237 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2) (version 2) Metagenome Rhizosphere
39 3300006358 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 Metagenome Rhizosphere
40 3300006881 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 Metagenome Rhizosphere
41 3300009036 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-4 metaG Metagenome Rhizosphere
42 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
43 3300009174 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG Metagenome Rhizosphere
44 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
45 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
46 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
47 3300013100 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6-5 metaG Metagenome Rhizosphere
48 3300013102 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG Metagenome Rhizosphere
49 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
50 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
51 3300013296 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG Metagenome Rhizosphere
52 3300013297 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG Metagenome Rhizosphere
53 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
54 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
55 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
56 3300014497 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-129_1 metaG Metagenome Rhizosphere
57 3300015261 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-104_1 MetaG Metagenome Rhizosphere
58 3300015262 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-113_1 MetaG Metagenome Rhizosphere
59 3300015682 Rizhosphere microbial communities from mature sugarcane plants Campinas, Sao Paulo, Brazil - 001.1_A01 Metagenome Rhizosphere
60 3300017792 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG Metagenome Rhizosphere
61 3300025231 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mMS (SPAdes) (version 2) Metagenome Endosphere
62 3300025233 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mTSA (SPAdes) (version 2) Metagenome Endosphere
63 3300025245 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mTSA (SPAdes) (version 3) Metagenome Endosphere
64 3300025250 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mCL (SPAdes) (version 2) Metagenome Unclassified
65 3300025258 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMS (SPAdes) (version 3) Metagenome Endosphere
66 3300025261 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mCL (SPAdes) (version 2) Metagenome Endosphere
67 3300025292 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mLB_r2 (SPAdes) (version 2) Metagenome Endosphere
68 3300025294 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mLB (SPAdes) (version 2) Metagenome Endosphere
69 3300025297 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF (SPAdes) (version 2) Metagenome Endosphere
70 3300025298 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 (SPAdes) (version 2) Metagenome Endosphere
71 3300025904 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2 (SPAdes) (version 2) Metagenome Rhizosphere
72 3300025907 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
73 3300025909 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
74 3300025911 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
75 3300025912 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
76 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
77 3300025914 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
78 3300025919 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
79 3300025931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
80 3300025932 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
81 3300025933 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
82 3300025938 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 (SPAdes) (version 2) Metagenome Rhizosphere
83 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
84 3300025960 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
85 3300026023 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 (SPAdes) (version 2) Metagenome Rhizosphere
86 3300026041 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes) (version 2) Metagenome Rhizosphere
87 3300026067 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
88 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
89 3300026089 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes) (version 2) Metagenome Rhizosphere
90 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
91 3300026121 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
92 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
93 3300028786 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 23_EM Metagenome Unclassified
94 3300028794 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM Metagenome Unclassified
95 3300028800 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG Metagenome Rhizosphere
96 3300030731 Rhizosphere soil microbial communities in infected wheat plant from Wellcamp field in Toowoomba, Australia - sample 3 Metagenome Rhizosphere
97 3300030742 Rhizosphere soil microbial communities in a healthy wheat plant from a non-infected Wellcamp field in Toowoomba, Australia - sample 9 Metagenome Rhizosphere
98 3300030744 Rhizosphere soil microbial communities in a healthy wheat plant from a non-infected Wellcamp field in Toowoomba, Australia - sample 7 Metagenome Rhizosphere
99 3300031507 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 10_EM Metagenome Unclassified
100 3300031548 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3 Metagenome Rhizosphere
101 3300031731 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-1 Metagenome Rhizosphere
102 3300031903 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-1 Metagenome Rhizosphere
103 3300031911 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1 Metagenome Rhizosphere
104 3300031995 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2 Metagenome Rhizosphere
105 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
106 3300032004 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3 Metagenome Rhizosphere
107 3300033179 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 7_EM Metagenome Unclassified
108 3300033180 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 12_EM Metagenome Unclassified
109 3300037312 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_B SG_2 Metagenome Rhizosphere
110 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
111 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
112 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
113 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
114 3300042005 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0512LE14Z062817_5216 Metagenome Rhizosphere
115 3300044684 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC4R Metagenome Rhizosphere
116 3300046454 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-198-CL2_38_5 rhizosphere Metagenome Rhizosphere
117 3300046462 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-86-CL2_69_17 rhizosphere Metagenome Rhizosphere
118 3300046471 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co3_9_34 rhizosphere Metagenome Rhizosphere
119 3300046492 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co3_21_57 rhizosphere Metagenome Rhizosphere
120 3300046500 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co1_23_3 rhizosphere Metagenome Rhizosphere
121 3300046507 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co2_62_14 rhizosphere Metagenome Rhizosphere
122 3300046512 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co2_50_17 rhizosphere Metagenome Rhizosphere
123 3300046513 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-351-Co2_42_17 rhizosphere Metagenome Rhizosphere
124 3300046518 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co1_22_4 rhizosphere Metagenome Rhizosphere
125 3300046523 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co3_28_42 rhizosphere Metagenome Rhizosphere
126 3300046524 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co1_12_9 rhizosphere Metagenome Rhizosphere
127 3300046529 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-866-CL2_50_11 rhizosphere Metagenome Rhizosphere
128 3300046530 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-866-Co1_10_5 rhizosphere Metagenome Rhizosphere
129 3300046538 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co1_12_7 rhizosphere Metagenome Rhizosphere
130 3300046558 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co3_6_53 rhizosphere Metagenome Rhizosphere
131 3300046616 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co1_14_4 rhizosphere Metagenome Rhizosphere
132 3300046660 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co1_32_7 rhizosphere Metagenome Rhizosphere
133 3300046665 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co3_16_51 rhizosphere Metagenome Rhizosphere
134 3300046694 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 rhizosphere Metagenome Rhizosphere
135 3300047443 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co3_24_32 rhizosphere Metagenome Rhizosphere
136 3300047472 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co2_54_22 rhizosphere Metagenome Rhizosphere
137 3300049459 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co2_62_24 rhizosphere Metagenome Rhizosphere
138 3300049460 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWA-24-3-Co2_41_10 rhizosphere Metagenome Rhizosphere
139 3300049663 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - I4_A_2_drought Metagenome Rhizosphere
140 3300049758 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - D15_A_3_drought Metagenome Rhizosphere
141 3300050493 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 re-annotation Metagenome Endosphere
142 3300050496 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 re-annotation Metagenome Endosphere
143 3300053080 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-905-CL1_32_20 endosphere Metagenome Endosphere
144 3300053122 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL3_77_6 endosphere Metagenome Endosphere
145 3300053125 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL1_28_5 endosphere Metagenome Endosphere
146 3300053156 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 endosphere Metagenome Endosphere
147 3300053157 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-86-CL2_69_17 endosphere Metagenome Endosphere
148 2585427687 Pedobacter borealis DSM 19626 Isolate Rhizosphere
149 2599185184 Mucilaginibacter sp. NFR10 Isolate Rhizoplane
150 2738541284 Pedobacter sp. YR016 Isolate Unclassified
151 2738541302 Pedobacter sp. CF074 Isolate Unclassified
152 2738543023 Pedobacter sp. OK628 Isolate Unclassified
153 2739367651 Pedobacter sp. OK291 Isolate Unclassified
154 2739367656 Pedobacter sp. CF523 Isolate Unclassified
155 2739367663 Pedobacter sp. YR510 Isolate Unclassified
156 2775506987 Pedobacter ginsengisoli T01R-27 Isolate Unclassified
157 2818991437 Pedobacter terrae 518 Isolate Unclassified
158 2842722452 Pedobacter sp. R-72249 Isolate Unclassified
159 2842903701 Olivibacter sp. R-72191 Isolate Unclassified
160 2842909656 Pedobacter sp. R-72393 Isolate Unclassified
161 2849281842 Pedobacter sp. AK013 Isolate Rhizosphere
162 2852623160 Mucilaginibacter sp. AK015 Isolate Rhizosphere
163 2852627209 Pedobacter sp. AK017 Isolate Rhizosphere
164 2857627736 Pedobacter sp. R-74587 Isolate Unclassified
165 2884933994 Mucilaginibacter sp. 14171R-50 Isolate Rhizosphere
166 2902048731 Pedobacter ureilyticus THG-T11 Isolate Rhizosphere
167 2904445276 Pedobacter terrae 1734 Isolate Rhizosphere
168 2919186247 Pedobacter africanus 2697 Isolate Rhizosphere
169 2919437846 Mucilaginibacter pocheonensis 3262 Isolate Rhizosphere
170 2928078545 Mucilaginibacter rubeus 1215 Isolate Unclassified
171 2928147474 Mucilaginibacter rubeus 2025 Isolate Unclassified
172 2932082852 Mucilaginibacter sp. 3215 Isolate Rhizosphere
173 2939664404 Pedobacter africanus 2990 Isolate Rhizosphere
174 2945997725 Pedobacter sp. W3I1 Isolate Rhizosphere
175 2954016120 Flavobacterium sp. W4I14 Isolate Rhizosphere
176 2977232053 Mucilaginibacter terrae SORGH_AS 422 Isolate Unclassified
177 8055588893 Parapedobacter lycopersici KACC 18788 Isolate Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 89.84
Metatranscriptomes 0.33
Isolates 9.84

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 10.49
Nodule 0
Rhizoplane 0.33
Rhizosphere 78.69
Stem 0
Stem Tuber 0
Unclassified 0.33

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0070660_100103400 3300005339 Bacteria 2259
2 JGI24736J21556_1007428 3300001904 Bacteria 1842
3 JGI24737J22298_10000580 3300001990 Bacteria 12843
4 JGI24737J22298_10003666 3300001990 Bacteria 5412
5 JGI24735J21928_10000015 3300002067 Bacteria 167231
6 JGI25162J39368_1000039 3300002737 Bacteria 175976
7 JGI25162J39368_1000887 3300002737 Bacteria 19548
8 JGI25164J39214_1001771 3300002772 Bacteria 4211
9 JGI25152J39213_1000344 3300002773 Bacteria 29557
10 JGI25150J39212_1000003 3300002774 Bacteria 508651
11 JGI25151J46595_10000002 3300003187 Bacteria 731381
12 JGI25165J46597_1001086 3300003214 Bacteria 17365
13 JGI25153J46596_10000030 3300003215 Bacteria 200879
14 rootH2_10022000 3300003320 Bacteria 16585
15 rootH2_10040443 3300003320 Bacteria 19021
16 rootH2_10133612 3300003320 Bacteria 2374
17 rootL2_10200757 3300003322 Bacteria 3131
18 rootH1_10001800 3300003323 Bacteria 72551
19 rootH1_10051067 3300003323 Bacteria 14425
20 rootH1_10090871 3300003323 Bacteria 7019
21 Ga0055536_1000137 3300003781 Bacteria 62695
22 Ga0055530_10001074 3300003791 Bacteria 21509
23 Ga0058863_11890588 3300004799 Bacteria 1871
24 Ga0065714_10002279 3300005288 Bacteria 31050
25 Ga0065714_10007231 3300005288 Bacteria 5293
26 Ga0065714_10065216 3300005288 Bacteria 11808
27 Ga0065714_10077716 3300005288 Bacteria 2665
28 Ga0065714_10080465 3300005288 Bacteria 2435
29 Ga0065704_10000276 3300005289 Bacteria 41922
30 Ga0070658_10000027 3300005327 Bacteria 164254
31 Ga0070676_10000794 3300005328 Bacteria 15592
32 Ga0070660_100130710 3300005339 Unclassified 2009
33 Ga0070673_100008643 3300005364 Bacteria 6787
34 Ga0070659_100000391 3300005366 Bacteria 33281
35 Ga0070659_100018037 3300005366 Bacteria 5322
36 Ga0070663_100031870 3300005455 Bacteria 3627
37 Ga0070678_100019983 3300005456 Bacteria 4384
38 Ga0070662_100000281 3300005457 Bacteria 30079
39 Ga0070681_10027992 3300005458 Bacteria 5666
40 Ga0068867_100009834 3300005459 Bacteria 6740
41 Ga0070679_100009532 3300005530 Bacteria 9186
42 Ga0068853_100044793 3300005539 Bacteria 3788
43 Ga0068853_100047979 3300005539 Bacteria 3666
44 Ga0068853_100151010 3300005539 Bacteria 2091
45 Ga0070665_100000178 3300005548 Bacteria 113002
46 Ga0068855_100000149 3300005563 Bacteria 89273
47 Ga0068855_100000311 3300005563 Bacteria 60403
48 Ga0068855_100015097 3300005563 Bacteria 9300
49 Ga0068855_100231294 3300005563 Bacteria 2070
50 Ga0068857_100030991 3300005577 Bacteria 4726
51 Ga0068854_100015635 3300005578 Bacteria 5035
52 Ga0068856_100000095 3300005614 Bacteria 84075
53 Ga0068856_100018261 3300005614 Bacteria 6799
54 Ga0068856_100032055 3300005614 Bacteria 5143
55 Ga0068852_100000732 3300005616 Bacteria 21522
56 Ga0075366_10000316 3300006195 Bacteria 21955
57 Ga0075366_10001328 3300006195 Bacteria 12357
58 Ga0097621_100000917 3300006237 Bacteria 20622
59 Ga0068871_100001037 3300006358 Bacteria 18605
60 Ga0068865_100000129 3300006881 Bacteria 39057
61 Ga0105244_10024161 3300009036 Bacteria 3321
62 Ga0105240_10000294 3300009093 Bacteria 97108
63 Ga0105240_10003959 3300009093 Bacteria 22879
64 Ga0105240_10004547 3300009093 Bacteria 21059
65 Ga0105240_10019765 3300009093 Bacteria 8995
66 Ga0105240_10097507 3300009093 Bacteria 3582
67 Ga0105241_10015216 3300009174 Bacteria 5635
68 Ga0105241_10137939 3300009174 Bacteria 1982
69 Ga0105237_10000109 3300009545 Bacteria 115699
70 Ga0105237_10003701 3300009545 Bacteria 18025
71 Ga0105237_10012380 3300009545 Bacteria 8990
72 Ga0105237_10016530 3300009545 Bacteria 7666
73 Ga0105237_10073526 3300009545 Bacteria 3411
74 Ga0105238_10002422 3300009551 Bacteria 18713
75 Ga0105239_10000007 3300010375 Bacteria 385297
76 Ga0105239_10000015 3300010375 Bacteria 319892
77 Ga0105239_10002638 3300010375 Bacteria 22647
78 Ga0105239_10003125 3300010375 Bacteria 20554
79 Ga0105239_10056810 3300010375 Bacteria 4293
80 Ga0105239_10270448 3300010375 Bacteria 1911
81 Ga0157373_10000120 3300013100 Bacteria 60625
82 Ga0157373_10000254 3300013100 Bacteria 43477
83 Ga0157373_10000532 3300013100 Bacteria 29743
84 Ga0157373_10005300 3300013100 Bacteria 9681
85 Ga0157373_10019392 3300013100 Bacteria 4950
86 Ga0157373_10050510 3300013100 Bacteria 2961
87 Ga0157371_10000143 3300013102 Bacteria 103796
88 Ga0157371_10000229 3300013102 Bacteria 81458
89 Ga0157370_10000125 3300013104 Bacteria 91078
90 Ga0157370_10010985 3300013104 Bacteria 9496
91 Ga0157370_10019040 3300013104 Bacteria 6900
92 Ga0157370_10034088 3300013104 Bacteria 4960
93 Ga0157370_10050796 3300013104 Bacteria 3962
94 Ga0157370_10068575 3300013104 Bacteria 3352
95 Ga0157370_10091033 3300013104 Bacteria 2864
96 Ga0157370_10352500 3300013104 Bacteria 1356
97 Ga0157369_10000023 3300013105 Bacteria 226955
98 Ga0157369_10005961 3300013105 Bacteria 14153
99 Ga0157369_10176954 3300013105 Bacteria 2246
100 Ga0157374_10002208 3300013296 Bacteria 16412
101 Ga0157374_10002993 3300013296 Bacteria 14140
102 Ga0157374_10003907 3300013296 Bacteria 12519
103 Ga0157378_10002148 3300013297 Bacteria 17507
104 Ga0163162_10000008 3300013306 Bacteria 316194
105 Ga0163162_10000036 3300013306 Bacteria 144093
106 Ga0163162_10008415 3300013306 Bacteria 10060
107 Ga0163162_10034360 3300013306 Bacteria 5046
108 Ga0163162_10277424 3300013306 Bacteria 1808
109 Ga0157372_10000030 3300013307 Bacteria 179925
110 Ga0157372_10000051 3300013307 Bacteria 136437
111 Ga0157372_10006543 3300013307 Bacteria 12395
112 Ga0157372_10008795 3300013307 Bacteria 10724
113 Ga0157372_10030981 3300013307 Bacteria 5855
114 Ga0157372_10047156 3300013307 Bacteria 4786
115 Ga0157375_10012620 3300013308 Bacteria 7498
116 Ga0157375_10015913 3300013308 Bacteria 6744
117 Ga0157375_10029913 3300013308 Bacteria 5128
118 Ga0182008_10000021 3300014497 Bacteria 227140
119 Ga0182008_10000306 3300014497 Bacteria 38394
120 Ga0182008_10046622 3300014497 Bacteria 2154
121 Ga0182006_1000064 3300015261 Bacteria 153418
122 Ga0182006_1000089 3300015261 Bacteria 110375
123 Ga0182006_1004151 3300015261 Bacteria 7188
124 Ga0182007_10000038 3300015262 Bacteria 123202
125 Ga0182007_10007795 3300015262 Bacteria 4452
126 Ga0183373_1009 3300015682 Bacteria 210158
127 Ga0163161_10000047 3300017792 Bacteria 126839
128 Ga0163161_10000090 3300017792 Bacteria 90964
129 Ga0163161_10000383 3300017792 Bacteria 37194
130 Ga0163161_10021794 3300017792 Bacteria 4506
131 Ga0163161_10173267 3300017792 Bacteria 1651
132 Ga0207427_100225 3300025231 Bacteria 48238
133 Ga0209437_100112 3300025233 Bacteria 214292
134 Ga0209437_100135 3300025233 Bacteria 176455
135 Ga0207425_1000003 3300025245 Bacteria 1145342
136 Ga0209026_1000243 3300025250 Bacteria 69921
137 Ga0209026_1001971 3300025250 Bacteria 8202
138 Ga0209026_1002794 3300025250 Bacteria 6207
139 Ga0209129_1000014 3300025258 Bacteria 509018
140 Ga0209233_1000126 3300025261 Bacteria 214298
141 Ga0209233_1000830 3300025261 Bacteria 13677
142 Ga0209676_1000009 3300025292 Bacteria 981719
143 Ga0209025_1000007 3300025294 Bacteria 1145109
144 Ga0209758_1000012 3300025297 Bacteria 949866
145 Ga0209050_1000190 3300025298 Bacteria 138532
146 Ga0207647_10000518 3300025904 Bacteria 30784
147 Ga0207647_10000723 3300025904 Bacteria 25877
148 Ga0207645_10000099 3300025907 Bacteria 64087
149 Ga0207705_10000053 3300025909 Bacteria 162124
150 Ga0207705_10090501 3300025909 Bacteria 2240
151 Ga0207654_10002379 3300025911 Bacteria 9630
152 Ga0207654_10006352 3300025911 Bacteria 5942
153 Ga0207654_10007396 3300025911 Bacteria 5530
154 Ga0207707_10018178 3300025912 Bacteria 6126
155 Ga0207695_10000142 3300025913 Bacteria 214715
156 Ga0207695_10003765 3300025913 Bacteria 21051
157 Ga0207695_10007954 3300025913 Bacteria 13375
158 Ga0207695_10243622 3300025913 Bacteria 1698
159 Ga0207671_10000110 3300025914 Bacteria 126480
160 Ga0207671_10001371 3300025914 Bacteria 28336
161 Ga0207671_10003911 3300025914 Bacteria 14518
162 Ga0207671_10010842 3300025914 Bacteria 7477
163 Ga0207671_10039702 3300025914 Bacteria 3486
164 Ga0207671_10062933 3300025914 Bacteria 2756
165 Ga0207657_10016277 3300025919 Bacteria 7176
166 Ga0207644_10127904 3300025931 Bacteria 1941
167 Ga0207690_10018515 3300025932 Bacteria 4272
168 Ga0207706_10000138 3300025933 Bacteria 79643
169 Ga0207704_10000015 3300025938 Bacteria 163572
170 Ga0207667_10000030 3300025949 Bacteria 327226
171 Ga0207667_10003564 3300025949 Bacteria 19241
172 Ga0207667_10007795 3300025949 Bacteria 12798
173 Ga0207651_10037832 3300025960 Bacteria 3164
174 Ga0207677_10005617 3300026023 Bacteria 6815
175 Ga0207639_10007709 3300026041 Bacteria 7349
176 Ga0207639_10049999 3300026041 Bacteria 3173
177 Ga0207639_10138645 3300026041 Bacteria 2024
178 Ga0207678_10050129 3300026067 Bacteria 3607
179 Ga0207702_10000699 3300026078 Bacteria 36199
180 Ga0207702_10010264 3300026078 Bacteria 7846
181 Ga0207702_10023222 3300026078 Bacteria 5143
182 Ga0207648_10000888 3300026089 Bacteria 33713
183 Ga0207674_10041922 3300026116 Bacteria 4731
184 Ga0207683_10043498 3300026121 Bacteria 3926
185 Ga0268266_10000098 3300028379 Bacteria 182784
186 Ga0307517_10029960 3300028786 Bacteria 6401
187 Ga0307515_10000427 3300028794 Bacteria 101325
188 Ga0307515_10018306 3300028794 Bacteria 12693
189 Ga0307515_10040977 3300028794 Bacteria 7301
190 Ga0265338_10010934 3300028800 Bacteria 10551
191 Ga0316177_1131271 3300030731 Bacteria 5479
192 Ga0316183_1116825 3300030742 Bacteria 56435
193 Ga0316181_1151438 3300030744 Bacteria 1559
194 Ga0307509_10055399 3300031507 Bacteria 4214
195 Ga0307408_100000349 3300031548 Bacteria 43324
196 Ga0307408_100002510 3300031548 Bacteria 12823
197 Ga0307408_100077343 3300031548 Bacteria 2477
198 Ga0307405_10000022 3300031731 Bacteria 148522
199 Ga0307405_10045946 3300031731 Bacteria 2679
200 Ga0307407_10000012 3300031903 Bacteria 172479
201 Ga0307412_10000111 3300031911 Bacteria 64380
202 Ga0307412_10010353 3300031911 Bacteria 5368
203 Ga0307409_100002923 3300031995 Bacteria 9076
204 Ga0307416_100000024 3300032002 Bacteria 186924
205 Ga0307414_10000545 3300032004 Bacteria 19649
206 Ga0307414_10003645 3300032004 Bacteria 8249
207 Ga0307414_10005812 3300032004 Bacteria 6820
208 Ga0307414_10014620 3300032004 Bacteria 4713
209 Ga0307414_10023822 3300032004 Bacteria 3890
210 Ga0307414_10046000 3300032004 Bacteria 2992
211 Ga0307414_10168380 3300032004 Bacteria 1749
212 Ga0307507_10012877 3300033179 Bacteria 10261
213 Ga0307510_10004763 3300033180 Bacteria 16053
214 Ga0395899_0000034 3300037312 Bacteria 302623
215 Ga0395899_0000394 3300037312 Bacteria 51861
216 Ga0395899_0027412 3300037312 Bacteria 4296
217 Ga0395900_0001838 3300037418 Bacteria 24186
218 Ga0395900_0037062 3300037418 Bacteria 5028
219 Ga0395898_0071665 3300037466 Bacteria 3348
220 Ga0395905_0001634 3300037471 Bacteria 26593
221 Ga0395901_0471568 3300038443 Bacteria 1281
222 Ga0439448_0000282 3300042005 Bacteria 11126
223 Ga0466966_0033972 3300044684 Bacteria 3300
224 Ga0495592_0081472 3300046454 Bacteria 2340
225 Ga0495651_0138953 3300046462 Bacteria 1764
226 Ga0495650_0000144 3300046471 Bacteria 165957
227 Ga0495585_0000348 3300046492 Bacteria 44925
228 Ga0495585_0001200 3300046492 Bacteria 21074
229 Ga0495596_0011796 3300046500 Bacteria 3753
230 Ga0495606_0000430 3300046507 Bacteria 69872
231 Ga0495606_0011466 3300046507 Bacteria 7229
232 Ga0495606_0012583 3300046507 Bacteria 6771
233 Ga0495606_0018553 3300046507 Bacteria 5211
234 Ga0495610_0000130 3300046512 Bacteria 82710
235 Ga0495610_0000215 3300046512 Bacteria 62664
236 Ga0495610_0001817 3300046512 Bacteria 18559
237 Ga0495616_0000915 3300046513 Bacteria 21238
238 Ga0495616_0024683 3300046513 Bacteria 3222
239 Ga0495631_0007385 3300046518 Bacteria 5589
240 Ga0495644_0007274 3300046523 Bacteria 4278
241 Ga0495648_0004232 3300046524 Bacteria 12314
242 Ga0495648_0025419 3300046524 Bacteria 4009
243 Ga0495652_0111046 3300046529 Bacteria 2205
244 Ga0495654_0064606 3300046530 Bacteria 1749
245 Ga0495609_0001730 3300046538 Bacteria 14096
246 Ga0495633_0000596 3300046558 Bacteria 34875
247 Ga0495633_0001260 3300046558 Bacteria 20176
248 Ga0495633_0030326 3300046558 Bacteria 2627
249 Ga0495668_0000075 3300046616 Bacteria 163092
250 Ga0495625_0000059 3300046660 Bacteria 180330
251 Ga0495625_0001162 3300046660 Bacteria 33895
252 Ga0495625_0002634 3300046660 Bacteria 19161
253 Ga0495625_0016030 3300046660 Bacteria 5909
254 Ga0495661_0000134 3300046665 Bacteria 87487
255 Ga0495661_0014054 3300046665 Bacteria 5366
256 Ga0495649_0000031 3300046694 Bacteria 151547
257 Ga0495649_0036155 3300046694 Bacteria 2714
258 Ga0495687_000233 3300047443 Bacteria 77056
259 Ga0495687_000783 3300047443 Bacteria 34231
260 Ga0495686_0000419 3300047472 Bacteria 66923
261 Ga0495686_0001285 3300047472 Bacteria 28340
262 Ga0495686_0003600 3300047472 Bacteria 13290
263 Ga0495678_021090 3300049459 Bacteria 2874
264 Ga0495682_0018843 3300049460 Bacteria 2599
265 Ga0501223_000572 3300049663 Bacteria 8894
266 Ga0501241_004706 3300049758 Bacteria 2548
267 nmdc:mga0k408_191_c1 3300050493 Bacteria 32128
268 nmdc:mga0k408_241_c1 3300050493 Bacteria 22414
269 nmdc:mga07m45_167325_c1 3300050496 Bacteria 1277
270 Ga0500635_0003122 3300053080 Bacteria 4144
271 Ga0500608_002371 3300053122 Bacteria 6846
272 Ga0500608_002460 3300053122 Bacteria 6739
273 Ga0500618_000005 3300053125 Bacteria 253092
274 Ga0500622_0000302 3300053156 Bacteria 50416
275 Ga0500624_000188 3300053157 Bacteria 24391
276 2586207600 2585427687 Bacteria 5544917
277 2599481680 2599185184 Bacteria 6430550
278 2738764019 2738541284 Bacteria 5199923
279 2738856382 2738541302 Bacteria 5944758
280 2739302782 2738543023 Bacteria 6767879
281 2739587810 2739367651 Bacteria 6359826
282 2739614502 2739367656 Bacteria 5152243
283 2739646527 2739367663 Bacteria 5040914
284 2776616382 2775506987 Bacteria 5373360
285 2819545710 2818991437 Bacteria 5805520
286 2842724402 2842722452 Bacteria 6263924
287 2842908342 2842903701 Bacteria 6986368
288 2842912105 2842909656 Bacteria 6185908
289 2849284908 2849281842 Bacteria 6065644
290 2852624922 2852623160 Bacteria 4376875
291 2852629581 2852627209 Bacteria 5896285
292 2857629869 2857627736 Bacteria 5625397
293 2884936182 2884933994 Bacteria 4535041
294 2902050305 2902048731 Bacteria 4976191
295 2904448393 2904445276 Bacteria 5310396
296 2919191140 2919186247 Bacteria 6244071
297 2919437943 2919437846 Bacteria 6199444
298 2928082165 2928078545 Bacteria 6534839
299 2928149259 2928147474 Bacteria 6512076
300 2932087682 2932082852 Bacteria 6563563
301 2939669419 2939664404 Bacteria 6364494
302 2945998762 2945997725 Bacteria 6404843
303 2954021210 2954016120 Bacteria 6446024
304 2977233948 2977232053 Bacteria 5485925
305 8055589323 8055588893 Bacteria 3619545
306 Ga0070660_100103400
307 JGI24736J21556_1007428
308 JGI24737J22298_10000580
309 JGI24737J22298_10003666
310 JGI24735J21928_10000015
311 JGI25162J39368_1000039
312 JGI25162J39368_1000887
313 JGI25164J39214_1001771
314 JGI25152J39213_1000344
315 JGI25150J39212_1000003
316 JGI25151J46595_10000002
317 JGI25165J46597_1001086
318 JGI25153J46596_10000030
319 rootH2_10022000
320 rootH2_10040443
321 rootH2_10133612
322 rootL2_10200757
323 rootH1_10001800
324 rootH1_10051067
325 rootH1_10090871
326 Ga0055536_1000137
327 Ga0055530_10001074
328 Ga0058863_11890588
329 Ga0065714_10002279
330 Ga0065714_10007231
331 Ga0065714_10065216
332 Ga0065714_10077716
333 Ga0065714_10080465
334 Ga0065704_10000276
335 Ga0070658_10000027
336 Ga0070676_10000794
337 Ga0070660_100130710
338 Ga0070673_100008643
339 Ga0070659_100000391
340 Ga0070659_100018037
341 Ga0070663_100031870
342 Ga0070678_100019983
343 Ga0070662_100000281
344 Ga0070681_10027992
345 Ga0068867_100009834
346 Ga0070679_100009532
347 Ga0068853_100044793
348 Ga0068853_100047979
349 Ga0068853_100151010
350 Ga0070665_100000178
351 Ga0068855_100000149
352 Ga0068855_100000311
353 Ga0068855_100015097
354 Ga0068855_100231294
355 Ga0068857_100030991
356 Ga0068854_100015635
357 Ga0068856_100000095
358 Ga0068856_100018261
359 Ga0068856_100032055
360 Ga0068852_100000732
361 Ga0075366_10000316
362 Ga0075366_10001328
363 Ga0097621_100000917
364 Ga0068871_100001037
365 Ga0068865_100000129
366 Ga0105244_10024161
367 Ga0105240_10000294
368 Ga0105240_10003959
369 Ga0105240_10004547
370 Ga0105240_10019765
371 Ga0105240_10097507
372 Ga0105241_10015216
373 Ga0105241_10137939
374 Ga0105237_10000109
375 Ga0105237_10003701
376 Ga0105237_10012380
377 Ga0105237_10016530
378 Ga0105237_10073526
379 Ga0105238_10002422
380 Ga0105239_10000007
381 Ga0105239_10000015
382 Ga0105239_10002638
383 Ga0105239_10003125
384 Ga0105239_10056810
385 Ga0105239_10270448
386 Ga0157373_10000120
387 Ga0157373_10000254
388 Ga0157373_10000532
389 Ga0157373_10005300
390 Ga0157373_10019392
391 Ga0157373_10050510
392 Ga0157371_10000143
393 Ga0157371_10000229
394 Ga0157370_10000125
395 Ga0157370_10010985
396 Ga0157370_10019040
397 Ga0157370_10034088
398 Ga0157370_10050796
399 Ga0157370_10068575
400 Ga0157370_10091033
401 Ga0157370_10352500
402 Ga0157369_10000023
403 Ga0157369_10005961
404 Ga0157369_10176954
405 Ga0157374_10002208
406 Ga0157374_10002993
407 Ga0157374_10003907
408 Ga0157378_10002148
409 Ga0163162_10000008
410 Ga0163162_10000036
411 Ga0163162_10008415
412 Ga0163162_10034360
413 Ga0163162_10277424
414 Ga0157372_10000030
415 Ga0157372_10000051
416 Ga0157372_10006543
417 Ga0157372_10008795
418 Ga0157372_10030981
419 Ga0157372_10047156
420 Ga0157375_10012620
421 Ga0157375_10015913
422 Ga0157375_10029913
423 Ga0182008_10000021
424 Ga0182008_10000306
425 Ga0182008_10046622
426 Ga0182006_1000064
427 Ga0182006_1000089
428 Ga0182006_1004151
429 Ga0182007_10000038
430 Ga0182007_10007795
431 Ga0183373_1009
432 Ga0163161_10000047
433 Ga0163161_10000090
434 Ga0163161_10000383
435 Ga0163161_10021794
436 Ga0163161_10173267
437 Ga0207427_100225
438 Ga0209437_100112
439 Ga0209437_100135
440 Ga0207425_1000003
441 Ga0209026_1000243
442 Ga0209026_1001971
443 Ga0209026_1002794
444 Ga0209129_1000014
445 Ga0209233_1000126
446 Ga0209233_1000830
447 Ga0209676_1000009
448 Ga0209025_1000007
449 Ga0209758_1000012
450 Ga0209050_1000190
451 Ga0207647_10000518
452 Ga0207647_10000723
453 Ga0207645_10000099
454 Ga0207705_10000053
455 Ga0207705_10090501
456 Ga0207654_10002379
457 Ga0207654_10006352
458 Ga0207654_10007396
459 Ga0207707_10018178
460 Ga0207695_10000142
461 Ga0207695_10003765
462 Ga0207695_10007954
463 Ga0207695_10243622
464 Ga0207671_10000110
465 Ga0207671_10001371
466 Ga0207671_10003911
467 Ga0207671_10010842
468 Ga0207671_10039702
469 Ga0207671_10062933
470 Ga0207657_10016277
471 Ga0207644_10127904
472 Ga0207690_10018515
473 Ga0207706_10000138
474 Ga0207704_10000015
475 Ga0207667_10000030
476 Ga0207667_10003564
477 Ga0207667_10007795
478 Ga0207651_10037832
479 Ga0207677_10005617
480 Ga0207639_10007709
481 Ga0207639_10049999
482 Ga0207639_10138645
483 Ga0207678_10050129
484 Ga0207702_10000699
485 Ga0207702_10010264
486 Ga0207702_10023222
487 Ga0207648_10000888
488 Ga0207674_10041922
489 Ga0207683_10043498
490 Ga0268266_10000098
491 Ga0307517_10029960
492 Ga0307515_10000427
493 Ga0307515_10018306
494 Ga0307515_10040977
495 Ga0265338_10010934
496 Ga0316177_1131271
497 Ga0316183_1116825
498 Ga0316181_1151438
499 Ga0307509_10055399
500 Ga0307408_100000349
501 Ga0307408_100002510
502 Ga0307408_100077343
503 Ga0307405_10000022
504 Ga0307405_10045946
505 Ga0307407_10000012
506 Ga0307412_10000111
507 Ga0307412_10010353
508 Ga0307409_100002923
509 Ga0307416_100000024
510 Ga0307414_10000545
511 Ga0307414_10003645
512 Ga0307414_10005812
513 Ga0307414_10014620
514 Ga0307414_10023822
515 Ga0307414_10046000
516 Ga0307414_10168380
517 Ga0307507_10012877
518 Ga0307510_10004763
519 Ga0395899_0000034
520 Ga0395899_0000394
521 Ga0395899_0027412
522 Ga0395900_0001838
523 Ga0395900_0037062
524 Ga0395898_0071665
525 Ga0395905_0001634
526 Ga0395901_0471568
527 Ga0439448_0000282
528 Ga0466966_0033972
529 Ga0495592_0081472
530 Ga0495651_0138953
531 Ga0495650_0000144
532 Ga0495585_0000348
533 Ga0495585_0001200
534 Ga0495596_0011796
535 Ga0495606_0000430
536 Ga0495606_0011466
537 Ga0495606_0012583
538 Ga0495606_0018553
539 Ga0495610_0000130
540 Ga0495610_0000215
541 Ga0495610_0001817
542 Ga0495616_0000915
543 Ga0495616_0024683
544 Ga0495631_0007385
545 Ga0495644_0007274
546 Ga0495648_0004232
547 Ga0495648_0025419
548 Ga0495652_0111046
549 Ga0495654_0064606
550 Ga0495609_0001730
551 Ga0495633_0000596
552 Ga0495633_0001260
553 Ga0495633_0030326
554 Ga0495668_0000075
555 Ga0495625_0000059
556 Ga0495625_0001162
557 Ga0495625_0002634
558 Ga0495625_0016030
559 Ga0495661_0000134
560 Ga0495661_0014054
561 Ga0495649_0000031
562 Ga0495649_0036155
563 Ga0495687_000233
564 Ga0495687_000783
565 Ga0495686_0000419
566 Ga0495686_0001285
567 Ga0495686_0003600
568 Ga0495678_021090
569 Ga0495682_0018843
570 Ga0501223_000572
571 Ga0501241_004706
572 nmdc:mga0k408_191_c1
573 nmdc:mga0k408_241_c1
574 nmdc:mga07m45_167325_c1
575 Ga0500635_0003122
576 Ga0500608_002371
577 Ga0500608_002460
578 Ga0500618_000005
579 Ga0500622_0000302
580 Ga0500624_000188
581 2586207600
582 2599481680
583 2738764019
584 2738856382
585 2739302782
586 2739587810
587 2739614502
588 2739646527
589 2776616382
590 2819545710
591 2842724402
592 2842908342
593 2842912105
594 2849284908
595 2852624922
596 2852629581
597 2857629869
598 2884936182
599 2902050305
600 2904448393
601 2919191140
602 2919437943
603 2928082165
604 2928149259
605 2932087682
606 2939669419
607 2945998762
608 2954021210
609 2977233948
610 8055589323

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF00875

DNA_photolyase

DNA photolyase

6

181

0.95

PF03441

FAD_binding_7

FAD binding domain of DNA photolyase

283

481

0.9

Structural Annotation

Top 5 Hits

ID Description Score Start End
6kii-assembly1.cif.gz_A photolyase from arthrospira platensis 0.9063 4 424
2vtb-assembly3.cif.gz_E structure of cryptochrome 3 - dna complex 0.9029 2 425
2ijg-assembly1.cif.gz_X crystal structure of cryptochrome 3 from arabidopsis thaliana 0.8997 1 424
1np7-assembly2.cif.gz_B crystal structure analysis of synechocystis sp. pcc6803 cryptochrome 0.898 1 424
2vtb-assembly3.cif.gz_F structure of cryptochrome 3 - dna complex 0.8876 2 425
ID Description Score Start End Superfamily
af_A0A1D6PAR6_93_238_3.40.50.620 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;HUPs 0.9837 3 135 3.40.50.620
1np7A01 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;HUPs 0.9752 5 135 3.40.50.620
1np7A01 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;HUPs 0.9608 5 135 3.40.50.620
af_Q4KML2_1_138_3.40.50.620 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;HUPs 0.9526 1 135 3.40.50.620
af_I1JUL6_54_237_3.40.50.620 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;HUPs 0.9325 1 135 3.40.50.620
ID Description Score Start End GO Terms
AF-A0A444YZA9-F1-model_v4 Photolyase/cryptochrome alpha/beta domain-containing protein 0.9771 1 104 GO:0000719
GO:0003677
GO:0003904
GO:0004523
GO:0016020
GO:0071949
AF-A0A2T2S534-F1-model_v4 Cryptochrome DASH 0.976 1 135 GO:0000719
GO:0003677
GO:0003904
GO:0071949
AF-A0A368DDJ8-F1-model_v4 DASH family cryptochrome 0.9739 1 119 GO:0000719
GO:0003677
GO:0003904
GO:0071949
AF-A0A6I5PVS4-F1-model_v4 deleted 0.973 6 162
AF-A0A846FMT7-F1-model_v4 deleted 0.9711 4 181

Map