F399458

General Info

Members Datasets Scaffolds Average Seq Length
307 208 189 250

Family's Representative Sequence

Representative Sequence iso_pu_bacteria|2960375949|2960378853
Length 242
Sequence TSTFSSIKRYMKLVTTKSKPLILIGPVDLPIDVDGQTYLFKWYTWLTEDNVKEGDTLEDVYTMLEGKPLAHKQLSSILVYGDFESQDEAYVRLHSICHTGDVFGSLLCDCGEQFKAARRMIVKEGCGAIFYLADQEGRGIGLYHKAMAYLLQKQGLDTVEANKVLGFEDDLRSYDEAISVLKILRNLPINLITNNSHKVKELRQGGIAINKRIPVWCEMTEYNERYIETKIERSGHIKGKLT

Samples

Sample ID Description Type Environment
1 2512564039 Paenibacillus mucilaginosus 3016 Isolate Rhizosphere
2 2548877040 Paenibacillus sonchi X19-5 Isolate Rhizosphere
3 2571042143 Paenibacillus graminis RSA19 Isolate Unclassified
4 2571042588 Paenibacillus zanthoxyli JH29 Isolate Unclassified
5 2576861424 Paenibacillus sabinae T27 Isolate Rhizosphere
6 2579778775 Paenibacillus durus P3L-5 Isolate Unclassified
7 2593339131 Bacillus sp. UNCCL81 Isolate Unclassified
8 2600255286 Paenibacillus sp. NFR01 Isolate Rhizoplane
9 2619619294 Paenibacillus durus ATCC 35681 Isolate Unclassified
10 2643221543 Paenibacillus sp. Root52 Isolate Unclassified
11 2643221732 Bacillus sp. Root239 Isolate Unclassified
12 2643221735 Bacillus sp. Root920 Isolate Unclassified
13 2671180330 Peribacillus simplex SH-B26 Isolate Unclassified
14 2684623153 Bacillus pumilus SH-B9 Isolate Unclassified
15 2687453109 Bacillus pumilus SH-B11 Isolate Unclassified
16 2695420987 Bacillus thuringiensis KNU-07 Isolate Unclassified
17 2718218445 Bacillus sp. B25(2016b) Isolate Rhizosphere
18 2721755693 Paenibacillus polymyxa YC0573 Isolate Rhizosphere
19 2728368933 Paenibacillus jilunlii DSM 23019 Isolate Rhizosphere
20 2728369359 Paenibacillus polymyxa YC0136 Isolate Rhizosphere
21 2738541295 Bacillus sp. OK085 Isolate Unclassified
22 2738541299 Paenisporosarcina sp. OV554 Isolate Unclassified
23 2738543010 Bacillus sp. YR335 Isolate Unclassified
24 2751185905 Paenibacillus kribbensis 6hRe76 Isolate Unclassified
25 2757320391 Bacillus sp. NFR08 Isolate Rhizoplane
26 2775507177 Bacillus sp. AFS055030 Isolate Unclassified
27 2775507192 Bacillus sp. AFS041924 Isolate Unclassified
28 2788500588 Lysinibacillus sp. YS11 Isolate Unclassified
29 2791355222 Paenibacillus oryzae 1DrF-4 Isolate Unclassified
30 2802428803 Paenibacillus peoriae NMA1017 Isolate Rhizosphere
31 2816332186 Peribacillus frigoritolerans 3612 Isolate Unclassified
32 2818991441 Niallia circulans 3243 Isolate Rhizosphere
33 2818991451 Lysinibacillus fusiformis 3193 Isolate Unclassified
34 2818991459 Paenibacillus sp. 597 Isolate Unclassified
35 2818991465 Priestia megaterium 3291 Isolate Rhizosphere
36 2818991468 Bacillus safensis 3300 Isolate Rhizosphere
37 2821111986 Paenibacillus illinoisensis 582 Isolate Unclassified
38 2823526263 Bacillus altitudinis P-10 Isolate Unclassified
39 2842682962 Bacillus sp. R-72492 Isolate Unclassified
40 2842882022 Bacillus sp. R-71893 Isolate Unclassified
41 2849139964 Bacillus sp. R-71875 Isolate Unclassified
42 2852673933 Sporosarcina sp. JAI121 Isolate Rhizosphere
43 2857581216 Bacillus sp. R-71922 Isolate Unclassified
44 2857604169 Domibacillus sp. R-71921 Isolate Unclassified
45 2864733723 Paenibacillus sp. JGP012 Isolate Rhizosphere
46 2865002811 Paenibacillus sp. R-74131 Isolate Unclassified
47 2881636855 Paenibacillus sp. 7197 Isolate Rhizosphere
48 2885526491 Paenibacillus sp. LK1 Isolate Rhizosphere
49 2888578766 Paenibacillus lycopersici 12200R-189 Isolate Rhizosphere
50 2889042446 Paenibacillus sp. 37 Isolate Rhizosphere
51 2889049205 Paenibacillus rhizovicinus 14171R-81 Isolate Rhizosphere
52 2889276214 Paenibacillus sp. PvR133 Isolate Rhizosphere
53 2904113452 Paenibacillus paridis py1325 Isolate Unclassified
54 2904162308 Paenibacillus sp. AD87 Isolate Unclassified
55 2904490793 Paenibacillus sp. 1295 Isolate Rhizosphere
56 2904524088 Priestia megaterium 1428 Isolate Rhizosphere
57 2904595352 Paenibacillus sp. 1182 Isolate Unclassified
58 2904606771 Lysinibacillus macroides 1284 Isolate Rhizosphere
59 2908665501 Bacillus pumilus 1391 Isolate Rhizosphere
60 2919093281 Bacillus safensis 1383 Isolate Rhizosphere
61 2919143609 Priestia megaterium 1751 Isolate Rhizosphere
62 2919160200 Paenibacillus sp. 2003 Isolate Unclassified
63 2919425241 Bacillus sp. 3255 Isolate Rhizosphere
64 2919517244 Priestia aryabhattai 3820 Isolate Unclassified
65 2919720352 Priestia megaterium 4340 Isolate Unclassified
66 2919726948 Bacillus pumilus 4489 Isolate Unclassified
67 2925326138 Paenibacillus hemerocallicola KCTC 33185 Isolate Unclassified
68 2928093941 Priestia aryabhattai 1389 Isolate Rhizosphere
69 2928510474 Sporosarcina psychrophila 1288 Isolate Rhizosphere
70 2929004312 Priestia megaterium 1104 Isolate Unclassified
71 2929233124 Bacillus sp. R-74298 Hybrid assembly Isolate Unclassified
72 2931384279 Paenibacillus sp. DR312 Isolate Rhizosphere
73 2936340661 Gottfriedia acidiceleris 1-17 Isolate Rhizosphere
74 2936361878 Neobacillus endophyticus BRMEA1 Isolate Unclassified
75 2938649242 Paenibacillus helianthi P26E Isolate Rhizosphere
76 2939593269 Lysinibacillus parviboronicapiens 736 Isolate Rhizosphere
77 2939679117 Paenibacillus sp. 4624 Isolate Rhizosphere
78 2939702853 Paenibacillus sp. PvR008 Isolate Rhizosphere
79 2945991243 Paenibacillus sp. B21a W2I17 Isolate Rhizosphere
80 2946053406 Paenibacillus sp. W4I10 Isolate Rhizosphere
81 2947426588 Bacillus sp. RZ2MS9 Isolate Rhizosphere
82 2954773129 Bacillus sp. TBS-096 Isolate Rhizosphere
83 2956897341 Ectobacillus funiculus W18-2 Isolate Rhizosphere
84 2960319331 Priestia megaterium AFS057444 Isolate Unclassified
85 2960375949 Priestia megaterium AFS067084 Isolate Unclassified
86 2965761152 Bacillus sp. COPE52 Isolate Unclassified
87 2968558590 Paenibacillus sp. P3E Isolate Rhizosphere
88 2971403814 Paenibacillus tritici LMG 29502 Isolate Unclassified
89 2980125574 Paenibacillus sp. tmac-D7 Isolate Unclassified
90 2980176882 Paenibacillus apii 7028 Isolate Rhizosphere
91 2984527788 Paenibacillus sp. SORGH_AS306 Isolate Aerial Root
92 2984532647 Paenibacillus sp. SORGH_AS338 Isolate Aerial Root
93 2988225383 Paenibacillus sp. P46E Isolate Rhizosphere
94 2996632988 Paenibacillus sp. P32E Isolate Rhizosphere
95 2996706504 Paenibacillus sp. OT2-17 Isolate Rhizosphere
96 3001892409 Neobacillus rhizophilus FJAT-49825 Isolate Rhizosphere
97 3006973921 Bacillus sp. FJAT-49736 Isolate Rhizosphere
98 3300003187 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mLB Metagenome Endosphere
99 3300003316 Sugarcane root Sample L1 Metagenome Unclassified
100 3300003320 Sugarcane root Sample H2 Metagenome Unclassified
101 3300003322 Sugarcane root Sample L2 Metagenome Unclassified
102 3300003578 Arabidopsis root microbial communities from the University of North Carolina, USA - metaT NBMF1_36_input_d2 (Metagenome Metatranscriptome, Counting Only) Metatranscriptome Unclassified
103 3300003751 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mLB_r2 Metagenome Endosphere
104 3300003758 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mLB_r2 Metagenome Endosphere
105 3300003781 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mLB_r2 Metagenome Endosphere
106 3300003841 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mTSA_r2 Metagenome Endosphere
107 3300005331 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG Metagenome Rhizosphere
108 3300006051 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 Metagenome Endosphere
109 3300009036 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-4 metaG Metagenome Rhizosphere
110 3300009092 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-4 metaG Metagenome Rhizosphere
111 3300009148 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG Metagenome Rhizosphere
112 3300009553 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG Metagenome Rhizosphere
113 3300011119 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG Metagenome Rhizosphere
114 3300013102 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG Metagenome Rhizosphere
115 3300013296 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG Metagenome Rhizosphere
116 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
117 3300025224 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mLB_r2 (SPAdes) (version 2) Metagenome Endosphere
118 3300025225 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mTSA_r2 (SPAdes) (version 2) Metagenome Endosphere
119 3300025229 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mLB_r2 (SPAdes) (version 2) Metagenome Endosphere
120 3300025233 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mTSA (SPAdes) (version 2) Metagenome Endosphere
121 3300025242 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mTSA_r2 (SPAdes) (version 2) Metagenome Endosphere
122 3300025273 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMS_r2 (SPAdes) (version 3) Metagenome Endosphere
123 3300025291 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mLB_r2 (SPAdes) (version 3) Metagenome Endosphere
124 3300025292 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mLB_r2 (SPAdes) (version 2) Metagenome Endosphere
125 3300025294 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mLB (SPAdes) (version 2) Metagenome Endosphere
126 3300025302 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMS (SPAdes) (version 2) Metagenome Endosphere
127 3300025728 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
128 3300025735 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
129 3300025906 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
130 3300025935 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
131 3300030083 Coralloid root microbial communities from Jiquipilas, Chiapas, Mexico - JPPOOL-T1 Metagenome Unclassified
132 3300031548 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3 Metagenome Rhizosphere
133 3300031911 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1 Metagenome Rhizosphere
134 3300031995 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2 Metagenome Rhizosphere
135 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
136 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
137 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
138 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
139 3300038705 Coralloid root microbial communities from Raymundo Flores, Chiapas, Mexico - RF1-T1 Metagenome Unclassified
140 3300041406 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0503DE14Z070717_5284 Metagenome Rhizosphere
141 3300041443 Perennial ryegrass root microbial community from Lincoln, Canterbury, New Zealand - RGR17_2 MetaG Metagenome Rhizoplane
142 3300042007 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0612DE14Z070717_5290 Metagenome Rhizosphere
143 3300042015 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0503WE14Z070717_5287 Metagenome Rhizosphere
144 3300045049 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC3R Metagenome Rhizosphere
145 3300045976 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA4R Metagenome Rhizosphere
146 3300046455 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-307-CL1_26_33 rhizosphere Metagenome Rhizosphere
147 3300046457 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-133-Co2_50_25 rhizosphere Metagenome Rhizosphere
148 3300046458 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-133-Co3_19_46 rhizosphere Metagenome Rhizosphere
149 3300046491 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co2_41_23 rhizosphere Metagenome Rhizosphere
150 3300046522 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 rhizosphere Metagenome Rhizosphere
151 3300046530 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-866-Co1_10_5 rhizosphere Metagenome Rhizosphere
152 3300046557 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL1_25_34 rhizosphere Metagenome Rhizosphere
153 3300046665 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co3_16_51 rhizosphere Metagenome Rhizosphere
154 3300046810 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co2_51_17 rhizosphere Metagenome Rhizosphere
155 3300047323 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWA-24-3-Co3_23_35 rhizosphere Metagenome Rhizosphere
156 3300048091 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co2_54_7 rhizosphere Metagenome Rhizosphere
157 3300048903 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7v unlabeled Metagenome Rhizoplane
158 3300048904 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7w unlabeled Metagenome Rhizoplane
159 3300048905 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1c N15 Metagenome Rhizoplane
160 3300048906 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1d N15 Metagenome Rhizoplane
161 3300048907 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2c N15 Metagenome Rhizoplane
162 3300048908 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2d N15 Metagenome Rhizoplane
163 3300048909 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3c N15 Metagenome Rhizoplane
164 3300048910 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3d N15 Metagenome Rhizoplane
165 3300048911 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8v unlabeled Metagenome Rhizoplane
166 3300048912 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8w unlabeled Metagenome Rhizoplane
167 3300048913 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4c N15 Metagenome Rhizoplane
168 3300048914 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4d N15 Metagenome Rhizoplane
169 3300048915 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5c N15 Metagenome Rhizoplane
170 3300048916 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5d N15 Metagenome Rhizoplane
171 3300048919 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_7x unlabeled Metagenome Unclassified
172 3300048920 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1e N15 Metagenome Unclassified
173 3300048921 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1f N15 Metagenome Unclassified
174 3300048922 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2e N15 Metagenome Unclassified
175 3300048923 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2f N15 Metagenome Unclassified
176 3300048924 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_3e N15 Metagenome Unclassified
177 3300048925 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8x unlabeled Metagenome Unclassified
178 3300048926 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8y unlabeled Metagenome Unclassified
179 3300048927 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_4e N15 Metagenome Unclassified
180 3300048928 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_5e N15 Metagenome Unclassified
181 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
182 3300049127 Metatranscriptome of panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - J3_A_0_control (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
183 3300049129 Metatranscriptome of panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - I2_B_0_drought (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
184 3300049161 Metatranscriptome of panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - I2_A_0_drought (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
185 3300049527 Metatranscriptome of panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - J4_B_0_control (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
186 3300049528 Metatranscriptome of panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - J2_A_2_control (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
187 3300049529 Metatranscriptome of panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - G5_A_2_control (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
188 3300049531 Metatranscriptome of panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - H4_A_2_drought (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
189 3300049532 Metatranscriptome of panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - G5_B_2_control (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
190 3300049533 Metatranscriptome of panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - F4_B_2_drought (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
191 3300049535 Metatranscriptome of panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - H12_A_3_drought (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
192 3300049537 Metatranscriptome of panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - B12_A_3_control (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
193 3300049546 Metatranscriptome of panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - J12_B_4_control (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
194 3300049649 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - J5_A_0_drought Metagenome Rhizosphere
195 3300049661 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - I5_B_0_control Metagenome Rhizosphere
196 3300049767 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - A15_B_4_drought Metagenome Rhizosphere
197 3300049775 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - F22_A_5_drought Metagenome Rhizosphere
198 3300050491 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 re-annotation Metagenome Endosphere
199 648028048 Paenibacillus polymyxa E681 Isolate Rhizosphere
200 8022621104 Bacillus sp. PIC28 Isolate Rhizosphere
201 8022893055 Bacillus aryabhattai AFS007213 Isolate Unclassified
202 8022914991 Bacillus aryabhattai SQU-R12 Isolate Unclassified
203 8023438354 Bacillus sp. BH2 Isolate Unclassified
204 8054465665 Paenibacillus sonchi IIRRBNF1 Isolate Rhizosphere
205 8055531788 Lysinibacillus pakistanensis LY1 Isolate Rhizosphere
206 8057473075 Paenibacillus endoradicis T3-5-0-4 Isolate Unclassified
207 8057632132 Cytobacillus kochii RZ2 Isolate Rhizosphere
208 8057977335 Paenibacillus oenotherae DT7-4 Isolate Unclassified

Type Distribution

Type Percentage (%)
Metagenomes 57
Metatranscriptomes 4.56
Isolates 38.44

Biome Distribution

Category Percentage (%)
Aerial Root 0.65
Bulb 0
Endosphere 14.01
Nodule 0
Rhizoplane 8.79
Rhizosphere 42.67
Stem 0
Stem Tuber 0
Unclassified 33.88

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 JGI25151J46595_10001447 3300003187 Bacteria 16095
2 JGI25151J46595_10003168 3300003187 Bacteria 9243
3 JGI25151J46595_10006028 3300003187 Bacteria 6174
4 JGI25151J46595_10023011 3300003187 Bacteria 2576
5 JGI25151J46595_10041767 3300003187 Bacteria 1661
6 JGI25151J46595_10061280 3300003187 Bacteria 1198
7 rootH1_10003790 3300003316 Bacteria 21665
8 rootH2_10281170 3300003320 Bacteria 2463
9 rootL2_10088731 3300003322 Bacteria 5812
10 Ga0006562J51391_1000507 3300003578 Bacteria 13920
11 Ga0055538_1000528 3300003751 Bacteria 13560
12 Ga0055532_1000060 3300003758 Bacteria 150321
13 Ga0055532_1013884 3300003758 Bacteria 913
14 Ga0055536_1008272 3300003781 Bacteria 4502
15 Ga0055536_1037520 3300003781 Bacteria 1185
16 Ga0055541_1000655 3300003841 Bacteria 9070
17 Ga0055541_1003835 3300003841 Bacteria 2784
18 Ga0070670_100769835 3300005331 Bacteria 868
19 Ga0075364_10099042 3300006051 Unclassified 1940
20 Ga0105244_10000808 3300009036 Bacteria 26551
21 Ga0105244_10000870 3300009036 Bacteria 25529
22 Ga0105244_10038465 3300009036 Bacteria 2495
23 Ga0105244_10054183 3300009036 Bacteria 2036
24 Ga0105244_10056698 3300009036 Bacteria 1982
25 Ga0105250_10097492 3300009092 Bacteria 1199
26 Ga0105243_10233447 3300009148 Bacteria 1633
27 Ga0105249_10741258 3300009553 Bacteria 1044
28 Ga0105246_10000452 3300011119 Bacteria 22011
29 Ga0157371_10076354 3300013102 Bacteria 2372
30 Ga0157374_10560879 3300013296 Bacteria 1150
31 Ga0157372_10337803 3300013307 Bacteria 1755
32 Ga0209784_100118 3300025224 Bacteria 83084
33 Ga0209566_100249 3300025225 Bacteria 51510
34 Ga0209566_100940 3300025225 Bacteria 13263
35 Ga0209566_102989 3300025225 Bacteria 2796
36 Ga0209147_100080 3300025229 Bacteria 196308
37 Ga0209147_100413 3300025229 Bacteria 28449
38 Ga0209147_101159 3300025229 Bacteria 10780
39 Ga0209437_101201 3300025233 Bacteria 7539
40 Ga0209258_104771 3300025242 Bacteria 2469
41 Ga0209673_1007054 3300025273 Bacteria 5272
42 Ga0209675_1004667 3300025291 Bacteria 6017
43 Ga0209675_1029781 3300025291 Bacteria 1310
44 Ga0209676_1000521 3300025292 Bacteria 60410
45 Ga0209676_1006317 3300025292 Bacteria 5881
46 Ga0209025_1000011 3300025294 Bacteria 976387
47 Ga0209025_1000262 3300025294 Bacteria 123617
48 Ga0209025_1001109 3300025294 Bacteria 38664
49 Ga0209025_1002192 3300025294 Bacteria 21620
50 Ga0209025_1002668 3300025294 Bacteria 18226
51 Ga0209025_1002804 3300025294 Bacteria 17561
52 Ga0209025_1003348 3300025294 Bacteria 15379
53 Ga0209025_1006140 3300025294 Bacteria 9461
54 Ga0209025_1007734 3300025294 Bacteria 7925
55 Ga0209025_1010600 3300025294 Bacteria 6219
56 Ga0209025_1033138 3300025294 Bacteria 2395
57 Ga0209025_1076035 3300025294 Bacteria 1165
58 Ga0209025_1078034 3300025294 Bacteria 1138
59 Ga0207426_1012878 3300025302 Bacteria 3123
60 Ga0207655_1000073 3300025728 Bacteria 232160
61 Ga0207655_1000294 3300025728 Bacteria 75407
62 Ga0207655_1014068 3300025728 Bacteria 4546
63 Ga0207655_1014309 3300025728 Bacteria 4493
64 Ga0207713_1006246 3300025735 Bacteria 7293
65 Ga0207699_10241385 3300025906 Bacteria 1241
66 Ga0207709_10113445 3300025935 Bacteria 1817
67 Ga0237817_10240 3300030083 Bacteria 13529
68 Ga0307408_100009020 3300031548 Bacteria 6588
69 Ga0307408_100062578 3300031548 Bacteria 2720
70 Ga0307408_100163834 3300031548 Bacteria 1769
71 Ga0307408_100660054 3300031548 Bacteria 936
72 Ga0307412_10061334 3300031911 Bacteria 2528
73 Ga0307409_100014845 3300031995 Bacteria 5085
74 Ga0307409_100825298 3300031995 Bacteria 936
75 Ga0307416_100067491 3300032002 Bacteria 2950
76 Ga0307416_100578392 3300032002 Bacteria 1200
77 Ga0307416_100736798 3300032002 Bacteria 1077
78 Ga0395900_0034978 3300037418 Bacteria 5174
79 Ga0395898_0059576 3300037466 Bacteria 3713
80 Ga0395901_0428586 3300038443 Bacteria 1355
81 Ga0237819_00227 3300038705 Bacteria 20510
82 Ga0439439_0004608 3300041406 Bacteria 3119
83 Ga0439439_0007455 3300041406 Bacteria 2561
84 Ga0451789_0486936 3300041443 Bacteria 1184
85 Ga0439449_0000341 3300042007 Bacteria 16978
86 Ga0439449_0006591 3300042007 Bacteria 4439
87 Ga0439449_0008482 3300042007 Bacteria 3905
88 Ga0439462_0001265 3300042015 Bacteria 5538
89 Ga0439462_0014069 3300042015 Unclassified 2053
90 Ga0466959_0008541 3300045049 Bacteria 7248
91 Ga0466967_0033115 3300045976 Bacteria 4373
92 Ga0466967_0074711 3300045976 Bacteria 3045
93 Ga0466967_0274011 3300045976 Bacteria 1618
94 Ga0466967_0523013 3300045976 Bacteria 1166
95 Ga0495603_0043568 3300046455 Bacteria 2679
96 Ga0495590_0004200 3300046457 Bacteria 5826
97 Ga0495591_065948 3300046458 Bacteria 951
98 Ga0495584_0228431 3300046491 Bacteria 946
99 Ga0495643_0056883 3300046522 Unclassified 2086
100 Ga0495654_0128511 3300046530 Bacteria 1140
101 Ga0495622_0078744 3300046557 Bacteria 1517
102 Ga0495661_0064752 3300046665 Bacteria 2156
103 Ga0495661_0092676 3300046665 Bacteria 1716
104 Ga0495661_0130488 3300046665 Bacteria 1378
105 Ga0495660_0010248 3300046810 Bacteria 5450
106 Ga0495660_0031481 3300046810 Bacteria 2982
107 Ga0495660_0120765 3300046810 Bacteria 1326
108 Ga0495683_0024195 3300047323 Bacteria 3118
109 Ga0495626_0034635 3300048091 Bacteria 2415
110 Ga0495626_0089028 3300048091 Bacteria 1360
111 Ga0495626_0130834 3300048091 Bacteria 1071
112 Ga0496100_0152512 3300048903 Bacteria 1649
113 Ga0496101_0003472 3300048904 Bacteria 9834
114 Ga0496102_0019559 3300048905 Bacteria 5964
115 Ga0496103_0001553 3300048906 Bacteria 15248
116 Ga0496104_0007866 3300048907 Bacteria 9450
117 Ga0496105_0000731 3300048908 Bacteria 22279
118 Ga0496106_0001510 3300048909 Bacteria 17497
119 Ga0496107_0003454 3300048910 Bacteria 10558
120 Ga0496108_0009298 3300048911 Bacteria 7956
121 Ga0496108_0103303 3300048911 Bacteria 2431
122 Ga0496109_0001186 3300048912 Bacteria 21638
123 Ga0496109_0407209 3300048912 Bacteria 1285
124 Ga0496110_0000366 3300048913 Bacteria 30258
125 Ga0496110_0008037 3300048913 Bacteria 8459
126 Ga0496110_0025868 3300048913 Bacteria 5018
127 Ga0496110_0029317 3300048913 Bacteria 4734
128 Ga0496110_0113194 3300048913 Bacteria 2440
129 Ga0496111_0002756 3300048914 Bacteria 10689
130 Ga0496111_0009130 3300048914 Bacteria 6599
131 Ga0496111_0024205 3300048914 Bacteria 4273
132 Ga0496112_0024121 3300048915 Bacteria 5821
133 Ga0496112_0152558 3300048915 Bacteria 2278
134 Ga0496113_0387626 3300048916 Bacteria 1121
135 Ga0496113_0546324 3300048916 Bacteria 929
136 Ga0496116_0006176 3300048919 Bacteria 10952
137 Ga0496116_0011233 3300048919 Bacteria 7436
138 Ga0496116_0019782 3300048919 Bacteria 5143
139 Ga0496116_0059815 3300048919 Bacteria 2475
140 Ga0496117_0008216 3300048920 Bacteria 9953
141 Ga0496117_0016770 3300048920 Bacteria 6156
142 Ga0496118_0038878 3300048921 Bacteria 3806
143 Ga0496119_0009559 3300048922 Bacteria 8294
144 Ga0496119_0013783 3300048922 Bacteria 6398
145 Ga0496119_0020406 3300048922 Bacteria 4836
146 Ga0496120_0002200 3300048923 Bacteria 20609
147 Ga0496120_0008242 3300048923 Bacteria 7614
148 Ga0496120_0012538 3300048923 Bacteria 5765
149 Ga0496120_0025785 3300048923 Bacteria 3644
150 Ga0496121_0013054 3300048924 Bacteria 8970
151 Ga0496121_0165886 3300048924 Bacteria 1610
152 Ga0496121_0284263 3300048924 Bacteria 1130
153 Ga0496122_0012011 3300048925 Bacteria 8684
154 Ga0496122_0023767 3300048925 Bacteria 5387
155 Ga0496122_0042625 3300048925 Bacteria 3567
156 Ga0496122_0062903 3300048925 Bacteria 2713
157 Ga0496122_0188814 3300048925 Bacteria 1219
158 Ga0496123_0035584 3300048926 Bacteria 3545
159 Ga0496123_0050544 3300048926 Bacteria 2776
160 Ga0496123_0119735 3300048926 Bacteria 1484
161 Ga0496124_0000502 3300048927 Bacteria 67173
162 Ga0496124_0001366 3300048927 Bacteria 36518
163 Ga0496124_0124447 3300048927 Bacteria 2056
164 Ga0496125_0001311 3300048928 Bacteria 36811
165 Ga0496125_0003102 3300048928 Bacteria 20707
166 Ga0496125_0005018 3300048928 Bacteria 14946
167 Ga0496125_0006126 3300048928 Bacteria 13121
168 Ga0496126_0000363 3300048929 Bacteria 94647
169 Ga0496126_0006266 3300048929 Bacteria 13287
170 Ga0496126_0016604 3300048929 Bacteria 7357
171 Ga0501306_001519 3300049127 Bacteria 2211
172 Ga0501309_000829 3300049129 Bacteria 2742
173 Ga0501305_026574 3300049161 Bacteria 884
174 Ga0501311_004503 3300049527 Bacteria 1486
175 Ga0501312_003917 3300049528 Bacteria 1726
176 Ga0501312_028581 3300049528 Bacteria 865
177 Ga0501313_013714 3300049529 Bacteria 953
178 Ga0501315_019570 3300049531 Bacteria 902
179 Ga0501316_016289 3300049532 Bacteria 903
180 Ga0501317_003964 3300049533 Bacteria 1512
181 Ga0501319_005901 3300049535 Bacteria 890
182 Ga0501321_005388 3300049537 Bacteria 1263
183 Ga0501330_002674 3300049546 Bacteria 1021
184 Ga0501198_027501 3300049649 Bacteria 934
185 Ga0501217_025012 3300049661 Bacteria 1433
186 Ga0501217_048616 3300049661 Bacteria 1102
187 Ga0501270_002947 3300049767 Bacteria 1793
188 Ga0501279_017081 3300049775 Bacteria 1014
189 nmdc:mga00v17_188297_c1 3300050491 Unclassified 1332

MSA Aligner

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Family Sequences

Sample Scaffold Protein Protein Length
1 iso_pu_bacteria 2818991441 2819570546 233
2 iso_pu_bacteria 2788500588 2791212564 235
3 iso_pu_bacteria 2818991451 2819626160 235
4 iso_pu_bacteria 2865002811 2865006083 235
5 iso_pu_bacteria 2904606771 2904606832 235
6 iso_pu_bacteria 2939593269 2939593350 235
7 iso_pu_bacteria 8055531788 8055533240 235
8 iso_pu_bacteria 2695420987 2698321896 236
9 iso_pu_bacteria 2718218445 2721506528 236
10 iso_pu_bacteria 2904113452 2904119622 236
11 iso_pu_bacteria 2929233124 2929237039 236
12 iso_pu_bacteria 2947426588 2947430072 236
13 iso_pu_bacteria 2965761152 2965764636 236
14 iso_pu_bacteria 3006973921 3006973963 236
15 iso_pu_bacteria 8022621104 8022623132 236
16 iso_pu_bacteria 8023438354 8023440140 236
17 3300009036 Ga0105244_10000870 Ga0105244_1000087016 237
18 3300025728 Ga0207655_1000294 Ga0207655_100029442 237
19 iso_pu_bacteria 2671180330 2672338384 237
20 iso_pu_bacteria 2816332186 2816865683 237
21 iso_pu_bacteria 2842682962 2842686353 237
22 iso_pu_bacteria 2849139964 2849143226 237
23 iso_pu_bacteria 2857581216 2857583486 237
24 iso_pu_bacteria 2956897341 2956899610 237
25 3300003187 JGI25151J46595_10023011 JGI25151J46595_100230112 238
26 3300003751 Ga0055538_1000528 Ga0055538_100052810 238
27 3300003781 Ga0055536_1008272 Ga0055536_10082722 238
28 3300003781 Ga0055536_1037520 Ga0055536_10375202 238
29 3300025224 Ga0209784_100118 Ga0209784_10011867 238
30 3300025292 Ga0209676_1000521 Ga0209676_100052125 238
31 3300025292 Ga0209676_1006317 Ga0209676_10063173 238
32 3300025294 Ga0209025_1002804 Ga0209025_10028043 238
33 3300025294 Ga0209025_1003348 Ga0209025_100334814 238
34 3300042007 Ga0439449_0008482 Ga0439449_0008482_1563_2315 238
35 3300046522 Ga0495643_0056883 Ga0495643_0056883_1077_1796 238
36 iso_pu_bacteria 2842882022 2842882164 238
37 iso_pu_bacteria 2904524088 2904527176 238
38 iso_pu_bacteria 2919143609 2919144232 238
39 iso_pu_bacteria 2919517244 2919519429 238
40 iso_pu_bacteria 2919720352 2919720554 238
41 iso_pu_bacteria 2928093941 2928095680 238
42 iso_pu_bacteria 2929004312 2929008062 238
43 3300006051 Ga0075364_10099042 Ga0075364_100990422 239
44 3300009036 Ga0105244_10000808 Ga0105244_1000080822 239
45 3300013102 Ga0157371_10076354 Ga0157371_100763541 239
46 3300025728 Ga0207655_1000073 Ga0207655_1000073209 239
47 3300025906 Ga0207699_10241385 Ga0207699_102413851 239
48 3300031548 Ga0307408_100660054 Ga0307408_1006600541 239
49 3300032002 Ga0307416_100578392 Ga0307416_1005783921 239
50 3300041443 Ga0451789_0486936 Ga0451789_0486936_355_1110 239
51 3300045976 Ga0466967_0074711 Ga0466967_0074711_502_1239 239
52 3300045976 Ga0466967_0274011 Ga0466967_0274011_787_1542 239
53 3300046665 Ga0495661_0130488 Ga0495661_0130488_98_829 239
54 3300046810 Ga0495660_0120765 Ga0495660_0120765_562_1299 239
55 3300048091 Ga0495626_0089028 Ga0495626_0089028_264_995 239
56 3300048913 Ga0496110_0008037 Ga0496110_0008037_6096_6836 239
57 3300048915 Ga0496112_0152558 Ga0496112_0152558_1301_2032 239
58 3300048916 Ga0496113_0546324 Ga0496113_0546324_152_898 239
59 3300049528 Ga0501312_028581 Ga0501312_028581_83_835 239
60 3300049529 Ga0501313_013714 Ga0501313_013714_36_788 239
61 3300049533 Ga0501317_003964 Ga0501317_003964_23_775 239
62 3300049546 Ga0501330_002674 Ga0501330_002674_244_996 239
63 3300050491 nmdc:mga00v17_188297_c1 nmdc:mga00v17_188297_c1_544_1293 239
64 iso_pu_bacteria 2643221543 2643740619 239
65 iso_pu_bacteria 2821111986 2821116521 239
66 iso_pu_bacteria 2864733723 2864734592 239
67 iso_pu_bacteria 2865002811 2865004451 239
68 iso_pu_bacteria 2885526491 2885532256 239
69 iso_pu_bacteria 2889042446 2889048365 239
70 iso_pu_bacteria 2904162308 2904167775 239
71 iso_pu_bacteria 2904490793 2904494625 239
72 iso_pu_bacteria 2919160200 2919164237 239
73 iso_pu_bacteria 2929004312 2929004331 239
74 iso_pu_bacteria 2931384279 2931385481 239
75 iso_pu_bacteria 2939679117 2939680345 239
76 iso_pu_bacteria 2945991243 2945995882 239
77 iso_pu_bacteria 2946053406 2946058584 239
78 iso_pu_bacteria 2960375949 2960378853 239
79 3300003187 JGI25151J46595_10003168 JGI25151J46595_100031686 240
80 3300003187 JGI25151J46595_10006028 JGI25151J46595_100060285 240
81 3300009036 Ga0105244_10056698 Ga0105244_100566982 240
82 3300025229 Ga0209147_101159 Ga0209147_1011596 240
83 3300025294 Ga0209025_1006140 Ga0209025_10061403 240
84 3300025294 Ga0209025_1007734 Ga0209025_10077344 240
85 3300030083 Ga0237817_10240 Ga0237817_102404 240
86 3300032002 Ga0307416_100736798 Ga0307416_1007367981 240
87 3300038705 Ga0237819_00227 Ga0237819_00227_18527_19399 240
88 3300041406 Ga0439439_0004608 Ga0439439_0004608_2310_3056 240
89 3300042007 Ga0439449_0006591 Ga0439449_0006591_89_835 240
90 3300042015 Ga0439462_0001265 Ga0439462_0001265_4596_5342 240
91 3300045976 Ga0466967_0033115 Ga0466967_0033115_3455_4342 240
92 3300046665 Ga0495661_0064752 Ga0495661_0064752_1038_1778 240
93 3300048091 Ga0495626_0130834 Ga0495626_0130834_143_883 240
94 3300048912 Ga0496109_0407209 Ga0496109_0407209_138_887 240
95 3300048913 Ga0496110_0000366 Ga0496110_0000366_8896_9645 240
96 3300048914 Ga0496111_0002756 Ga0496111_0002756_3177_3926 240
97 iso_pu_bacteria 2643221732 2644725256 240
98 iso_pu_bacteria 2818991465 2819707514 240
99 iso_pu_bacteria 2904113452 2904118806 240
100 iso_pu_bacteria 2960319331 2960322861 240
101 iso_pu_bacteria 2960375949 2960377873 240
102 iso_pu_bacteria 8022893055 8022896883 240
103 iso_pu_bacteria 8022914991 8022915099 240
104 iso_pu_bacteria 8057632132 8057632634 240
105 iso_pu_bacteria 2548877040 2550906246 241
106 iso_pu_bacteria 2571042143 2571527597 241
107 iso_pu_bacteria 2571042588 2573039653 241
108 iso_pu_bacteria 2576861424 2578337206 241
109 iso_pu_bacteria 2579778775 2580934265 241
110 iso_pu_bacteria 2600255286 2601637777 241
111 iso_pu_bacteria 2619619294 2621275505 241
112 iso_pu_bacteria 2721755693 2723606042 241
113 iso_pu_bacteria 2728368933 2728534777 241
114 iso_pu_bacteria 2728369359 2730136704 241
115 iso_pu_bacteria 2751185905 2753811338 241
116 iso_pu_bacteria 2802428803 2802439679 241
117 iso_pu_bacteria 2881636855 2881637462 241
118 iso_pu_bacteria 2889276214 2889276596 241
119 iso_pu_bacteria 2904595352 2904599725 241
120 iso_pu_bacteria 2939702853 2939704835 241
121 iso_pu_bacteria 2968558590 2968564794 241
122 iso_pu_bacteria 2971403814 2971406048 241
123 iso_pu_bacteria 2996706504 2996709184 241
124 iso_pu_bacteria 648028048 648172049 241
125 iso_pu_bacteria 8054465665 8054468265 241
126 3300003187 JGI25151J46595_10061280 JGI25151J46595_100612802 242
127 3300003316 rootH1_10003790 rootH1_1000379018 242
128 3300003320 rootH2_10281170 rootH2_102811702 242
129 3300003322 rootL2_10088731 rootL2_100887311 242
130 3300003758 Ga0055532_1013884 Ga0055532_10138841 242
131 3300003841 Ga0055541_1003835 Ga0055541_10038353 242
132 3300005331 Ga0070670_100769835 Ga0070670_1007698351 242
133 3300009148 Ga0105243_10233447 Ga0105243_102334472 242
134 3300013296 Ga0157374_10560879 Ga0157374_105608791 242
135 3300013307 Ga0157372_10337803 Ga0157372_103378031 242
136 3300025225 Ga0209566_100940 Ga0209566_1009405 242
137 3300025229 Ga0209147_100413 Ga0209147_10041328 242
138 3300025273 Ga0209673_1007054 Ga0209673_10070542 242
139 3300025294 Ga0209025_1001109 Ga0209025_100110913 242
140 3300025294 Ga0209025_1002668 Ga0209025_100266811 242
141 3300025302 Ga0207426_1012878 Ga0207426_10128781 242
142 3300025728 Ga0207655_1014309 Ga0207655_10143093 242
143 3300025735 Ga0207713_1006246 Ga0207713_10062463 242
144 3300025935 Ga0207709_10113445 Ga0207709_101134452 242
145 3300031548 Ga0307408_100163834 Ga0307408_1001638342 242
146 3300046455 Ga0495603_0043568 Ga0495603_0043568_815_1564 242
147 3300046458 Ga0495591_065948 Ga0495591_065948_79_831 242
148 3300046491 Ga0495584_0228431 Ga0495584_0228431_172_921 242
149 3300046665 Ga0495661_0092676 Ga0495661_0092676_813_1565 242
150 3300047323 Ga0495683_0024195 Ga0495683_0024195_1492_2241 242
151 3300048091 Ga0495626_0034635 Ga0495626_0034635_28_780 242
152 3300048903 Ga0496100_0152512 Ga0496100_0152512_872_1621 242
153 3300048904 Ga0496101_0003472 Ga0496101_0003472_4256_5005 242
154 3300048905 Ga0496102_0019559 Ga0496102_0019559_4344_5093 242
155 3300048906 Ga0496103_0001553 Ga0496103_0001553_9452_10201 242
156 3300048907 Ga0496104_0007866 Ga0496104_0007866_2698_3447 242
157 3300048908 Ga0496105_0000731 Ga0496105_0000731_13301_14050 242
158 3300048909 Ga0496106_0001510 Ga0496106_0001510_13622_14371 242
159 3300048910 Ga0496107_0003454 Ga0496107_0003454_558_1307 242
160 3300048911 Ga0496108_0009298 Ga0496108_0009298_5386_6135 242
161 3300048912 Ga0496109_0001186 Ga0496109_0001186_14115_14864 242
162 3300048913 Ga0496110_0029317 Ga0496110_0029317_2164_2913 242
163 3300048913 Ga0496110_0113194 Ga0496110_0113194_1031_1783 242
164 3300048914 Ga0496111_0009130 Ga0496111_0009130_2771_3520 242
165 3300048915 Ga0496112_0024121 Ga0496112_0024121_4643_5392 242
166 3300048916 Ga0496113_0387626 Ga0496113_0387626_216_965 242
167 3300048919 Ga0496116_0011233 Ga0496116_0011233_3870_4619 242
168 3300048922 Ga0496119_0013783 Ga0496119_0013783_1742_2491 242
169 3300048923 Ga0496120_0025785 Ga0496120_0025785_2184_2933 242
170 3300048924 Ga0496121_0165886 Ga0496121_0165886_757_1506 242
171 3300048925 Ga0496122_0062903 Ga0496122_0062903_344_1093 242
172 3300048928 Ga0496125_0006126 Ga0496125_0006126_10181_10930 242
173 3300048929 Ga0496126_0016604 Ga0496126_0016604_2657_3406 242
174 3300049528 Ga0501312_003917 Ga0501312_003917_197_946 242
175 3300049535 Ga0501319_005901 Ga0501319_005901_123_872 242
176 3300049537 Ga0501321_005388 Ga0501321_005388_353_1102 242
177 iso_pu_bacteria 2643221735 2644738448 242
178 iso_pu_bacteria 2684623153 2686998900 242
179 iso_pu_bacteria 2687453109 2687500202 242
180 iso_pu_bacteria 2738541295 2738814563 242
181 iso_pu_bacteria 2818991468 2819723106 242
182 iso_pu_bacteria 2823526263 2823530140 242
183 iso_pu_bacteria 2908665501 2908667373 242
184 iso_pu_bacteria 2919093281 2919094611 242
185 iso_pu_bacteria 2919726948 2919727169 242
186 iso_pu_bacteria 2938649242 2938649423 242
187 iso_pu_bacteria 2954773129 2954776447 242
188 iso_pu_bacteria 2988225383 2988231566 242
189 iso_pu_bacteria 2996632988 2996633664 242
190 iso_pu_bacteria 8057473075 8057474806 242
191 3300009036 Ga0105244_10038465 Ga0105244_100384651 243
192 3300011119 Ga0105246_10000452 Ga0105246_1000045216 243
193 3300025225 Ga0209566_102989 Ga0209566_1029893 243
194 3300025233 Ga0209437_101201 Ga0209437_1012012 243
195 3300025294 Ga0209025_1033138 Ga0209025_10331381 243
196 3300025728 Ga0207655_1014068 Ga0207655_10140682 243
197 3300031548 Ga0307408_100009020 Ga0307408_1000090202 243
198 3300031548 Ga0307408_100062578 Ga0307408_1000625783 243
199 3300031911 Ga0307412_10061334 Ga0307412_100613343 243
200 3300031995 Ga0307409_100014845 Ga0307409_1000148456 243
201 3300031995 Ga0307409_100825298 Ga0307409_1008252982 243
202 3300032002 Ga0307416_100067491 Ga0307416_1000674914 243
203 3300046530 Ga0495654_0128511 Ga0495654_0128511_186_941 243
204 3300046557 Ga0495622_0078744 Ga0495622_0078744_51_806 243
205 3300048911 Ga0496108_0103303 Ga0496108_0103303_1153_1908 243
206 3300048913 Ga0496110_0025868 Ga0496110_0025868_3814_4569 243
207 3300048914 Ga0496111_0024205 Ga0496111_0024205_3153_3908 243
208 3300048919 Ga0496116_0006176 Ga0496116_0006176_6080_6880 243
209 3300048919 Ga0496116_0059815 Ga0496116_0059815_181_948 243
210 3300048924 Ga0496121_0284263 Ga0496121_0284263_311_1111 243
211 3300048925 Ga0496122_0042625 Ga0496122_0042625_2530_3297 243
212 3300048925 Ga0496122_0188814 Ga0496122_0188814_261_1034 243
213 3300048926 Ga0496123_0119735 Ga0496123_0119735_30_797 243
214 3300048928 Ga0496125_0005018 Ga0496125_0005018_1015_1782 243
215 3300049531 Ga0501315_019570 Ga0501315_019570_54_809 243
216 3300049532 Ga0501316_016289 Ga0501316_016289_55_810 243
217 3300049649 Ga0501198_027501 Ga0501198_027501_82_837 243
218 3300049661 Ga0501217_025012 Ga0501217_025012_87_845 243
219 3300049661 Ga0501217_048616 Ga0501217_048616_195_950 243
220 3300049767 Ga0501270_002947 Ga0501270_002947_775_1530 243
221 iso_pu_bacteria 2738541295 2738813141 243
222 iso_pu_bacteria 2738543010 2739234871 243
223 iso_pu_bacteria 2852673933 2852675646 243
224 iso_pu_bacteria 2857604169 2857609298 243
225 iso_pu_bacteria 2925326138 2925328946 243
226 iso_pu_bacteria 2928510474 2928511051 243
227 iso_pu_bacteria 2936361878 2936364657 243
228 iso_pu_bacteria 2980125574 2980130782 243
229 iso_pu_bacteria 3001892409 3001893945 243
230 3300003578 Ga0006562J51391_1000507 Ga0006562J51391_10005077 244
231 3300003841 Ga0055541_1000655 Ga0055541_10006558 244
232 3300009036 Ga0105244_10054183 Ga0105244_100541832 244
233 3300009092 Ga0105250_10097492 Ga0105250_100974922 244
234 3300009553 Ga0105249_10741258 Ga0105249_107412582 244
235 3300025225 Ga0209566_100249 Ga0209566_1002497 244
236 3300025242 Ga0209258_104771 Ga0209258_1047712 244
237 3300025294 Ga0209025_1000011 Ga0209025_1000011218 244
238 3300025294 Ga0209025_1076035 Ga0209025_10760352 244
239 3300037418 Ga0395900_0034978 Ga0395900_0034978_575_1360 244
240 3300037466 Ga0395898_0059576 Ga0395898_0059576_1466_2251 244
241 3300038443 Ga0395901_0428586 Ga0395901_0428586_76_861 244
242 3300041406 Ga0439439_0007455 Ga0439439_0007455_1131_1868 244
243 3300042007 Ga0439449_0000341 Ga0439449_0000341_5549_6286 244
244 3300042015 Ga0439462_0014069 Ga0439462_0014069_54_791 244
245 3300045049 Ga0466959_0008541 Ga0466959_0008541_6014_6889 244
246 3300046457 Ga0495590_0004200 Ga0495590_0004200_2789_3550 244
247 3300046810 Ga0495660_0010248 Ga0495660_0010248_2909_3670 244
248 3300048926 Ga0496123_0050544 Ga0496123_0050544_1906_2685 244
249 3300048927 Ga0496124_0001366 Ga0496124_0001366_10523_11302 244
250 3300048928 Ga0496125_0001311 Ga0496125_0001311_4047_4826 244
251 iso_pu_bacteria 2512564039 2512731265 244
252 iso_pu_bacteria 2738541299 2738839608 244
253 iso_pu_bacteria 2791355222 2793182661 244
254 iso_pu_bacteria 2818991459 2819673942 244
255 iso_pu_bacteria 2919425241 2919426958 244
256 iso_pu_bacteria 2984527788 2984532346 244
257 iso_pu_bacteria 2984532647 2984533606 244
258 iso_pu_bacteria 8057977335 8057982295 244
259 3300046810 Ga0495660_0031481 Ga0495660_0031481_107_889 245
260 3300048920 Ga0496117_0016770 Ga0496117_0016770_5361_6125 245
261 3300048921 Ga0496118_0038878 Ga0496118_0038878_2040_2804 245
262 3300048922 Ga0496119_0020406 Ga0496119_0020406_1398_2162 245
263 3300048923 Ga0496120_0008242 Ga0496120_0008242_288_1052 245
264 3300048923 Ga0496120_0012538 Ga0496120_0012538_22_786 245
265 3300048924 Ga0496121_0013054 Ga0496121_0013054_1968_2732 245
266 3300048925 Ga0496122_0023767 Ga0496122_0023767_421_1185 245
267 3300048926 Ga0496123_0035584 Ga0496123_0035584_2520_3284 245
268 3300048927 Ga0496124_0124447 Ga0496124_0124447_524_1288 245
269 3300048928 Ga0496125_0003102 Ga0496125_0003102_16655_17419 245
270 iso_pu_bacteria 2888578766 2888584670 245
271 iso_pu_bacteria 2889049205 2889052880 245
272 iso_pu_bacteria 2980176882 2980182015 245
273 3300048919 Ga0496116_0019782 Ga0496116_0019782_768_1547 246
274 3300048920 Ga0496117_0008216 Ga0496117_0008216_1810_2589 246
275 3300048922 Ga0496119_0009559 Ga0496119_0009559_7288_8067 246
276 3300048923 Ga0496120_0002200 Ga0496120_0002200_16449_17228 246
277 3300048925 Ga0496122_0012011 Ga0496122_0012011_6252_7031 246
278 3300048927 Ga0496124_0000502 Ga0496124_0000502_43465_44244 246
279 3300048929 Ga0496126_0000363 Ga0496126_0000363_12542_13321 246
280 3300048929 Ga0496126_0006266 Ga0496126_0006266_1457_2236 246
281 3300003187 JGI25151J46595_10041767 JGI25151J46595_100417672 247
282 3300025291 Ga0209675_1004667 Ga0209675_10046676 247
283 3300025291 Ga0209675_1029781 Ga0209675_10297812 247
284 3300025294 Ga0209025_1002192 Ga0209025_10021928 247
285 iso_pu_bacteria 2816332186 2816865155 248
286 iso_pu_bacteria 2842682962 2842684026 248
287 iso_pu_bacteria 2849139964 2849144455 248
288 iso_pu_bacteria 2857581216 2857582055 248
289 3300045976 Ga0466967_0523013 Ga0466967_0523013_144_920 249
290 iso_pu_bacteria 2593339131 2595091414 249
291 iso_pu_bacteria 2671180330 2672335496 249
292 iso_pu_bacteria 2738543010 2739233315 249
293 iso_pu_bacteria 2757320391 2757566600 249
294 iso_pu_bacteria 2775507177 2777760489 249
295 iso_pu_bacteria 2775507192 2777839002 249
296 iso_pu_bacteria 2936340661 2936345295 249
297 3300025294 Ga0209025_1010600 Ga0209025_10106003 252
298 3300003187 JGI25151J46595_10001447 JGI25151J46595_100014475 253
299 3300003758 Ga0055532_1000060 Ga0055532_1000060137 253
300 3300025229 Ga0209147_100080 Ga0209147_10008016 253
301 3300025294 Ga0209025_1000262 Ga0209025_10002623 253
302 3300025294 Ga0209025_1078034 Ga0209025_10780342 253
303 3300049127 Ga0501306_001519 Ga0501306_001519_1132_1908 253
304 3300049129 Ga0501309_000829 Ga0501309_000829_25_801 253
305 3300049161 Ga0501305_026574 Ga0501305_026574_75_851 253
306 3300049527 Ga0501311_004503 Ga0501311_004503_493_1269 253
307 3300049775 Ga0501279_017081 Ga0501279_017081_93_869 253

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF00925

GTP_cyclohydro2

GTP cyclohydrolase II

64

214

0.96

Structural Annotation

Top 5 Hits

ID Description Score Start End
2bz0-assembly1.cif.gz_A crystal structure of e. coli gtp cyclohydrolase ii in complex with gtp analogue, gmpcpp, and zinc 0.9153 24 225
2bz1-assembly1.cif.gz_A-2 crystal structure of apo e. coli gtp cyclohydrolase ii 0.9142 24 225
2bz0-assembly1.cif.gz_A crystal structure of e. coli gtp cyclohydrolase ii in complex with gtp analogue, gmpcpp, and zinc 0.8944 24 225
2bz1-assembly1.cif.gz_A-2 crystal structure of apo e. coli gtp cyclohydrolase ii 0.894 24 225
4rl4-assembly1.cif.gz_A crystal structure of gtp cyclohydrolase ii from helicobacter pylori 26695 0.8739 17 224
ID Description Score Start End Superfamily
af_Q2FXG1_205_373_3.40.50.10990 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;GTP cyclohydrolase II 0.93 26 227 3.40.50.10990
af_Q2FXG1_205_373_3.40.50.10990 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;GTP cyclohydrolase II 0.9142 26 227 3.40.50.10990
2bz0A00 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;GTP cyclohydrolase II 0.9076 24 227 3.40.50.10990
af_A0A0R0GI97_331_502_3.40.50.10990 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;GTP cyclohydrolase II 0.9075 26 226 3.40.50.10990
af_A0A0R0GI97_331_502_3.40.50.10990 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;GTP cyclohydrolase II 0.8924 26 226 3.40.50.10990
ID Description Score Start End GO Terms
AF-A0A3Q8X9I9-F1-model_v4 GTP cyclohydrolase II (EC 3.5.4.25) 0.9717 2 246 GO:0003935
GO:0005525
GO:0005829
GO:0009231
AF-A0A1J3FIJ6-F1-model_v4 GTP cyclohydrolase II (EC 3.5.4.25) 0.9641 94 193 GO:0003935
GO:0005525
GO:0005829
GO:0008686
GO:0009231
AF-A0A0Q7SEA0-F1-model_v4 deleted 0.9601 1 245
AF-A0A5D4N5Q6-F1-model_v4 GTP cyclohydrolase II (EC 3.5.4.25) 0.9437 3 252 GO:0003935
GO:0005525
GO:0005829
GO:0009231
AF-A0A7S4A774-F1-model_v4 GTP cyclohydrolase II domain-containing protein 0.9437 24 245 GO:0003935
GO:0005525
GO:0005829
GO:0008686
GO:0009231

Feature Viewer

pLDDT pTM Quality
88.16 0.88 High
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Predicted Structure (AlphaFold2)

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