F400455

General Info

Members Datasets Scaffolds Average Seq Length
309 203 606 413

Family's Representative Sequence

Representative Sequence iso_pu_bacteria|2599185214|2599623688
Length 463
Sequence HALLAALLLRSQRCVSSGKSQRAAPKGLPKLPPIPESGNPDNRRDKQMNTSRFAIAALCLAMGSGTAIAQQQSVEVLHWWTSGGEAGALNVLKGNLEKQGVKWNDMPVAGGSGEAAMTALRARVTSGNPPTASQMLGFDILDWGKQGVVADLNALAQKGGWDKVVPPALQKFSKFNGKWIAAPVNIHSTNWVWANQAVLAKAGVTAEPKTWDEFIAAAEKVQKAGFIAIAHGGQPWQDATLFESVALSTGGIDYYRKVFIELDGKTIASPTTEKVFQRMSQLRKLVDKDFSGRDWNVASGMVIGGKAGFQVMGDWAKGEFVNAKQVPGKDFACFRFPGTQGVVTFNTDQFVMFKMKDADKEAAQQKLAAAIMEPGFQSAFNVVKGSAPARTDVPDTAFDACGKKAIKDVAEASQGNTLVGSMAHGHAVPASIKNAFYDVITRHFNGQLDDKKAVAALTSAAKN

Samples

Sample ID Description Type Environment
1 3300002773 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMS Metagenome Endosphere
2 3300002774 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mTSA Metagenome Endosphere
3 3300002987 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mLB Metagenome Endosphere
4 3300003215 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF Metagenome Endosphere
5 3300003354 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMS Metagenome Endosphere
6 3300003578 Arabidopsis root microbial communities from the University of North Carolina, USA - metaT NBMF1_36_input_d2 (Metagenome Metatranscriptome, Counting Only) Metatranscriptome Unclassified
7 3300003771 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMF_r2 Metagenome Endosphere
8 3300003775 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mCL_r2 Metagenome Endosphere
9 3300003781 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mLB_r2 Metagenome Endosphere
10 3300003784 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mLB_r2 Metagenome Endosphere
11 3300003790 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMS_r2 Metagenome Endosphere
12 3300003791 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 Metagenome Endosphere
13 3300003792 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mMS_r2 Metagenome Endosphere
14 3300003794 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 Metagenome Endosphere
15 3300004625 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mMF_r2 Metagenome Endosphere
16 3300005262 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMF (version 2) (version 3) Metagenome Endosphere
17 3300005290 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Rhizosphere Soil Replicate 1: eDNA_1 v3 (version 3) Metagenome Rhizosphere
18 3300005293 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Bulk Soil Replicate 1 : eDNA_1 v2 (version 2) Metagenome Rhizosphere
19 3300005330 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3H metaG Metagenome Rhizosphere
20 3300005334 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 Metagenome Rhizosphere
21 3300005338 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 Metagenome Rhizosphere
22 3300005340 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG Metagenome Rhizosphere
23 3300005341 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-1 metaG Metagenome Rhizosphere
24 3300005354 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG Metagenome Rhizosphere
25 3300005364 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG Metagenome Rhizosphere
26 3300005366 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG Metagenome Rhizosphere
27 3300005438 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-2 metaG Metagenome Rhizosphere
28 3300005441 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG Metagenome Rhizosphere
29 3300005444 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-1 metaG Metagenome Rhizosphere
30 3300005456 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG Metagenome Rhizosphere
31 3300005457 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG Metagenome Rhizosphere
32 3300005458 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG Metagenome Rhizosphere
33 3300005459 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 Metagenome Rhizosphere
34 3300005539 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 Metagenome Rhizosphere
35 3300005544 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3L metaG Metagenome Rhizosphere
36 3300005547 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-3 metaG Metagenome Rhizosphere
37 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
38 3300005549 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-2 metaG Metagenome Rhizosphere
39 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
40 3300005577 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 Metagenome Rhizosphere
41 3300005615 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-3 metaG Metagenome Rhizosphere
42 3300005617 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 Metagenome Rhizosphere
43 3300005618 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 Metagenome Rhizosphere
44 3300005718 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2 Metagenome Rhizosphere
45 3300005719 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 Metagenome Rhizosphere
46 3300005840 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2 Metagenome Rhizosphere
47 3300005841 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 Metagenome Rhizosphere
48 3300005842 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 Metagenome Rhizosphere
49 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
50 3300005844 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 Metagenome Rhizosphere
51 3300005981 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S5T2R1 Metagenome Rhizosphere
52 3300006178 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 Metagenome Endosphere
53 3300006186 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-4 Metagenome Endosphere
54 3300006195 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 Metagenome Endosphere
55 3300006237 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2) (version 2) Metagenome Rhizosphere
56 3300006358 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 Metagenome Rhizosphere
57 3300006881 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 Metagenome Rhizosphere
58 3300006931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 (version 2) (version 2) Metagenome Rhizosphere
59 3300007788 Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_2 Metagenome Rhizosphere
60 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
61 3300009098 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG Metagenome Rhizosphere
62 3300009148 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG Metagenome Rhizosphere
63 3300009174 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG Metagenome Rhizosphere
64 3300009176 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG Metagenome Rhizosphere
65 3300009177 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG Metagenome Rhizosphere
66 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
67 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
68 3300009553 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG Metagenome Rhizosphere
69 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
70 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
71 3300013297 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG Metagenome Rhizosphere
72 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
73 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
74 3300014326 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG Metagenome Rhizosphere
75 3300014497 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-129_1 metaG Metagenome Rhizosphere
76 3300014745 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M5-5 metaG Metagenome Rhizosphere
77 3300014968 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG Metagenome Rhizosphere
78 3300014969 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG Metagenome Rhizosphere
79 3300021321 Root nodule microbial communities from cowpea collected in UCLA plant growth center, Los Angeles, California, USA - CNSS1 Metagenome Nodule
80 3300021327 Root nodule microbial communities from cowpea collected in UCLA plant growth center, Los Angeles, California, USA - CNSS2 Metagenome Nodule
81 3300021361 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2 Metagenome Rhizosphere
82 3300021388 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 Metagenome Unclassified
83 3300025208 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mTSA (SPAdes) (version 2) Metagenome Endosphere
84 3300025245 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mTSA (SPAdes) (version 3) Metagenome Endosphere
85 3300025258 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMS (SPAdes) (version 3) Metagenome Endosphere
86 3300025273 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMS_r2 (SPAdes) (version 3) Metagenome Endosphere
87 3300025284 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mLB (SPAdes) (version 2) Metagenome Endosphere
88 3300025291 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mLB_r2 (SPAdes) (version 3) Metagenome Endosphere
89 3300025292 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mLB_r2 (SPAdes) (version 2) Metagenome Endosphere
90 3300025294 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mLB (SPAdes) (version 2) Metagenome Endosphere
91 3300025295 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMF_r2 (SPAdes) (version 3) Metagenome Endosphere
92 3300025297 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF (SPAdes) (version 2) Metagenome Endosphere
93 3300025298 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 (SPAdes) (version 2) Metagenome Endosphere
94 3300025299 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mCL_r2 (SPAdes) (version 3) Metagenome Endosphere
95 3300025302 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMS (SPAdes) (version 2) Metagenome Endosphere
96 3300025303 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mMS_r2 (SPAdes) (version 2) Metagenome Endosphere
97 3300025304 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
98 3300025899 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2 (SPAdes) (version 2) Metagenome Rhizosphere
99 3300025908 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2 (SPAdes) (version 2) Metagenome Rhizosphere
100 3300025911 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
101 3300025912 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
102 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
103 3300025914 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
104 3300025924 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
105 3300025927 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
106 3300025933 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
107 3300025934 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
108 3300025935 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
109 3300025936 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG (SPAdes) (version 2) Metagenome Rhizosphere
110 3300025938 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 (SPAdes) (version 2) Metagenome Rhizosphere
111 3300025941 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
112 3300025942 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes) (version 2) Metagenome Rhizosphere
113 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
114 3300026035 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes) (version 2) Metagenome Rhizosphere
115 3300026075 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
116 3300026088 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes) (version 2) Metagenome Rhizosphere
117 3300026089 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes) (version 2) Metagenome Rhizosphere
118 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
119 3300026118 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes) (version 2) Metagenome Rhizosphere
120 3300026121 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
121 3300026142 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes) (version 2) Metagenome Rhizosphere
122 3300027512 Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_2 (SPAdes) (version 2) Metagenome Rhizosphere
123 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
124 3300028380 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes) (version 2) Metagenome Rhizosphere
125 3300028666 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-19 metaG Metagenome Rhizosphere
126 3300028786 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 23_EM Metagenome Unclassified
127 3300028794 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM Metagenome Unclassified
128 3300029957 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-14-19 metaG Metagenome Rhizosphere
129 3300030522 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 14_EM Metagenome Unclassified
130 3300031238 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-26 metaG Metagenome Rhizosphere
131 3300031241 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-14-20 metaG Metagenome Rhizosphere
132 3300031456 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 15_EM Metagenome Unclassified
133 3300031507 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 10_EM Metagenome Unclassified
134 3300031616 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 9_EM Metagenome Unclassified
135 3300031649 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 16_EM Metagenome Unclassified
136 3300031711 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-26 metaG Metagenome Rhizosphere
137 3300031730 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 19_EM Metagenome Unclassified
138 3300032168 Metatranscriptome of rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S5-7_160517rA (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
139 3300033179 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 7_EM Metagenome Unclassified
140 3300033180 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 12_EM Metagenome Unclassified
141 3300033541 Metatranscriptome of rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S_170502SBrCrA (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
142 3300035090 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_N_2 Metagenome Rhizosphere
143 3300036401 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_16 Metagenome Rhizosphere
144 3300037068 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_16 Metagenome Rhizosphere
145 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
146 3300037853 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 v2 Metagenome Unclassified
147 3300038741 Seagrass microbial communities from Seahorse Key, FL, USA - SV0818 Metagenome Unclassified
148 3300039062 Seagrass microbial communities from Seahorse Key, FL, USA - HH0818 Metagenome Unclassified
149 3300039093 Seagrass microbial communities from Seahorse Key, FL, USA - TH0818 Metagenome Unclassified
150 3300039447 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2 v2 Metagenome Rhizosphere
151 3300041443 Perennial ryegrass root microbial community from Lincoln, Canterbury, New Zealand - RGR17_2 MetaG Metagenome Rhizoplane
152 3300041452 Perennial ryegrass root microbial community from Lincoln, Canterbury, New Zealand - RGR17_4 MetaG Metagenome Rhizoplane
153 3300041459 Perennial ryegrass root microbial community from Lincoln, Canterbury, New Zealand - RGR18_11 MetaG Metagenome Rhizoplane
154 3300041460 Perennial ryegrass root microbial community from Lincoln, Canterbury, New Zealand - RGR18_12 MetaG Metagenome Rhizoplane
155 3300041997 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0317DE14Z082817_5607 Metagenome Rhizosphere
156 3300044658 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC1R Metagenome Rhizosphere
157 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
158 3300046454 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-198-CL2_38_5 rhizosphere Metagenome Rhizosphere
159 3300046471 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co3_9_34 rhizosphere Metagenome Rhizosphere
160 3300046512 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co2_50_17 rhizosphere Metagenome Rhizosphere
161 3300046519 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co2_51_16 rhizosphere Metagenome Rhizosphere
162 3300046616 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co1_14_4 rhizosphere Metagenome Rhizosphere
163 3300046660 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co1_32_7 rhizosphere Metagenome Rhizosphere
164 3300046674 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL3_93_10 rhizosphere Metagenome Rhizosphere
165 3300046694 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 rhizosphere Metagenome Rhizosphere
166 3300046810 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co2_51_17 rhizosphere Metagenome Rhizosphere
167 3300047443 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co3_24_32 rhizosphere Metagenome Rhizosphere
168 3300048905 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1c N15 Metagenome Rhizoplane
169 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
170 3300049588 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_03 Metagenome Rhizosphere
171 3300050493 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 re-annotation Metagenome Endosphere
172 3300050509 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 re-annotation Metagenome Rhizosphere
173 3300053079 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co2_47_23 endosphere Metagenome Endosphere
174 3300053086 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co2_62_14 endosphere Metagenome Endosphere
175 3300053088 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co1_37_5 endosphere Metagenome Endosphere
176 3300053094 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-234-CL1_24_28 endosphere Metagenome Endosphere
177 3300053127 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co3_9_34 endosphere Metagenome Endosphere
178 3300053129 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-866-Co2_58_19 endosphere Metagenome Endosphere
179 3300053131 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co3_35_48 endosphere Metagenome Endosphere
180 3300053739 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-351-Co1_10_3 endosphere Metagenome Endosphere
181 3300059421 Rhizosphere soil microbial communities from sorghum plant in University of Arizona Maricopa Agricultural Center, AZ, USA - 6_0-15_MAC_RHIZO_20210810 Metagenome Rhizosphere
182 2599185214 Variovorax sp. NFACC26 Isolate Rhizoplane
183 2585428057 Methylibium sp. YR605 Isolate Rhizosphere
184 2585428058 Methylibium sp. CF468 Isolate Rhizosphere
185 2585428062 Methylibium sp. CF059 Isolate Rhizosphere
186 2588253510 Rhizobacter sp. OV335 Isolate Rhizosphere
187 2599185226 Variovorax sp. NFACC27 Isolate Rhizoplane
188 2599185227 Variovorax sp. NFACC28 Isolate Rhizoplane
189 2599185229 Variovorax sp. NFACC29 Isolate Endosphere
190 2643221592 Rhizobacter sp. Root16D2 Isolate Unclassified
191 2643221625 Rhizobacter sp. Root29 Isolate Unclassified
192 2643221648 Rhizobacter sp. Root1238 Isolate Unclassified
193 2721755523 Delftia sp. HK171 Isolate Unclassified
194 2767802442 Phyllobacterium brassicacearum 29-15 Isolate Rhizoplane
195 2838054893 Variovorax guangxiensis 34/80 Isolate Nodule
196 2839138175 Delftia acidovorans B15 Isolate Rhizosphere
197 2842509118 Rhizobium paranaense SEMIA 4064 Isolate Nodule
198 2885198086 Variovorax sp. 679 Isolate Unclassified
199 2885211737 Variovorax sp. 553 Isolate Unclassified
200 2928070936 Variovorax gossypii 1167 Isolate Unclassified
201 2995392953 Martelella limonii NBRC 109441 Isolate Unclassified
202 3002141150 Phyllobacterium sp. 628 Isolate Unclassified
203 8016583857 Bradyrhizobium sp. LM2.7 Isolate Nodule

Type Distribution

Type Percentage (%)
Metagenomes 91.26
Metatranscriptomes 1.62
Isolates 7.12

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 21.36
Nodule 1.62
Rhizoplane 3.24
Rhizosphere 62.14
Stem 0
Stem Tuber 0
Unclassified 0

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 JGI25152J39213_1001147 3300002773 Bacteria 12311
2 JGI25152J39213_1003603 3300002773 Bacteria 5239
3 JGI25150J39212_1005894 3300002774 Bacteria 2577
4 JGI25159J45721_1000123 3300002987 Bacteria 36902
5 JGI25159J45721_1000732 3300002987 Bacteria 14319
6 JGI25153J46596_10001186 3300003215 Bacteria 15742
7 JGI25153J46596_10001306 3300003215 Bacteria 14934
8 JGI25153J46596_10009913 3300003215 Bacteria 4364
9 JGI25160J50197_1001041 3300003354 Bacteria 14331
10 Ga0006562J51391_1021488 3300003578 Bacteria 1730
11 Ga0055526_1005794 3300003771 Bacteria 6957
12 Ga0055526_1007759 3300003771 Bacteria 5505
13 Ga0055524_1003162 3300003775 Bacteria 8106
14 Ga0055536_1000518 3300003781 Bacteria 26578
15 Ga0055534_1004727 3300003784 Bacteria 3854
16 Ga0055528_1011311 3300003790 Bacteria 3556
17 Ga0055530_10000214 3300003791 Bacteria 52165
18 Ga0055530_10008222 3300003791 Bacteria 4218
19 Ga0055540_1000862 3300003792 Bacteria 20214
20 Ga0055540_1008220 3300003792 Bacteria 3791
21 Ga0055531_10001168 3300003794 Bacteria 20214
22 Ga0055543_1000810 3300004625 Bacteria 15393
23 Ga0065165_1002676 3300005262 Bacteria 14369
24 Ga0065165_1016367 3300005262 Bacteria 2780
25 Ga0065712_10116765 3300005290 Bacteria 1730
26 Ga0065715_10109129 3300005293 Bacteria 2661
27 Ga0070690_100009160 3300005330 Bacteria 5729
28 Ga0068869_100010040 3300005334 Bacteria 6157
29 Ga0068869_100010110 3300005334 Bacteria 6139
30 Ga0068869_100035522 3300005334 Bacteria 3532
31 Ga0068868_100023560 3300005338 Bacteria 4660
32 Ga0070689_100015318 3300005340 Bacteria 5588
33 Ga0070691_10003023 3300005341 Bacteria 7531
34 Ga0070675_100035893 3300005354 Bacteria 4031
35 Ga0070673_100066800 3300005364 Bacteria 2874
36 Ga0070659_100088720 3300005366 Bacteria 2477
37 Ga0070701_10004821 3300005438 Bacteria 5515
38 Ga0070700_100002497 3300005441 Bacteria 9367
39 Ga0070700_100010355 3300005441 Bacteria 5146
40 Ga0070694_100114579 3300005444 Bacteria 1925
41 Ga0070694_100255958 3300005444 Bacteria 1326
42 Ga0070678_100024181 3300005456 Bacteria 4062
43 Ga0070678_100030883 3300005456 Bacteria 3688
44 Ga0070678_100068292 3300005456 Bacteria 2649
45 Ga0070662_100001705 3300005457 Bacteria 13515
46 Ga0070681_10003410 3300005458 Bacteria 14887
47 Ga0068867_100000034 3300005459 Bacteria 81468
48 Ga0068867_100002483 3300005459 Bacteria 12964
49 Ga0068867_100030308 3300005459 Bacteria 3903
50 Ga0068867_100031602 3300005459 Bacteria 3824
51 Ga0068853_100009130 3300005539 Bacteria 7987
52 Ga0068853_100010540 3300005539 Bacteria 7474
53 Ga0070686_100013566 3300005544 Bacteria 4671
54 Ga0070693_100033175 3300005547 Bacteria 2847
55 Ga0070665_100095464 3300005548 Bacteria 2978
56 Ga0070704_100058348 3300005549 Bacteria 2749
57 Ga0068855_100000355 3300005563 Bacteria 56724
58 Ga0068855_100038845 3300005563 Bacteria 5653
59 Ga0068857_100067278 3300005577 Bacteria 3189
60 Ga0070702_100004369 3300005615 Bacteria 6448
61 Ga0068859_100034051 3300005617 Bacteria 5114
62 Ga0068859_100037995 3300005617 Bacteria 4831
63 Ga0068859_100153016 3300005617 Bacteria 2382
64 Ga0068859_100166759 3300005617 Bacteria 2282
65 Ga0068864_100013091 3300005618 Bacteria 6871
66 Ga0068864_100013132 3300005618 Bacteria 6859
67 Ga0068866_10002113 3300005718 Bacteria 8263
68 Ga0068861_100011391 3300005719 Bacteria 6180
69 Ga0068870_10030239 3300005840 Bacteria 2736
70 Ga0068863_100009429 3300005841 Bacteria 9525
71 Ga0068858_100032310 3300005842 Bacteria 4861
72 Ga0068858_100035930 3300005842 Bacteria 4595
73 Ga0068858_100051763 3300005842 Bacteria 3799
74 Ga0068860_100209906 3300005843 Bacteria 1889
75 Ga0068860_100225532 3300005843 Bacteria 1820
76 Ga0068862_100037476 3300005844 Bacteria 4110
77 Ga0068862_100053237 3300005844 Bacteria 3464
78 Ga0081538_10026926 3300005981 Bacteria 4003
79 Ga0075367_10080774 3300006178 Bacteria 1967
80 Ga0075369_10071982 3300006186 Bacteria 1523
81 Ga0075366_10024350 3300006195 Bacteria 3531
82 Ga0075366_10130647 3300006195 Bacteria 1516
83 Ga0097621_100004091 3300006237 Bacteria 10115
84 Ga0097621_100104879 3300006237 Bacteria 2382
85 Ga0068871_100003419 3300006358 Bacteria 10914
86 Ga0068871_100020787 3300006358 Bacteria 5034
87 Ga0068865_100016301 3300006881 Bacteria 4752
88 Ga0068865_100100290 3300006881 Bacteria 2118
89 Ga0097620_100034052 3300006931 Bacteria 5114
90 Ga0097620_100037994 3300006931 Bacteria 4831
91 Ga0097620_100153020 3300006931 Bacteria 2382
92 Ga0097620_100166765 3300006931 Bacteria 2282
93 Ga0099795_10011570 3300007788 Bacteria 2643
94 Ga0105240_10002442 3300009093 Bacteria 29876
95 Ga0105240_10033195 3300009093 Bacteria 6672
96 Ga0105245_10028883 3300009098 Bacteria 4896
97 Ga0105245_10041119 3300009098 Bacteria 4121
98 Ga0105245_10078446 3300009098 Bacteria 3013
99 Ga0105243_10000467 3300009148 Bacteria 41810
100 Ga0105243_10001502 3300009148 Bacteria 20406
101 Ga0105243_10018069 3300009148 Bacteria 5335
102 Ga0105241_10003783 3300009174 Bacteria 11222
103 Ga0105241_10184153 3300009174 Bacteria 1734
104 Ga0105242_10006915 3300009176 Bacteria 8752
105 Ga0105242_10048945 3300009176 Bacteria 3438
106 Ga0105248_10022822 3300009177 Bacteria 6948
107 Ga0105248_10029747 3300009177 Bacteria 6096
108 Ga0105237_10001836 3300009545 Bacteria 27312
109 Ga0105237_10167167 3300009545 Bacteria 2198
110 Ga0105238_10017215 3300009551 Bacteria 7342
111 Ga0105238_10165871 3300009551 Bacteria 2184
112 Ga0105238_10284365 3300009551 Bacteria 1636
113 Ga0105249_10050013 3300009553 Bacteria 3812
114 Ga0105249_10275986 3300009553 Bacteria 1676
115 Ga0105239_10001156 3300010375 Bacteria 36262
116 Ga0105239_10042806 3300010375 Bacteria 4962
117 Ga0157370_10016933 3300013104 Bacteria 7368
118 Ga0157378_10004902 3300013297 Bacteria 11731
119 Ga0157378_10036362 3300013297 Bacteria 4358
120 Ga0157378_10068363 3300013297 Bacteria 3186
121 Ga0163162_10322628 3300013306 Bacteria 1677
122 Ga0157375_10011843 3300013308 Bacteria 7714
123 Ga0157380_10038099 3300014326 Bacteria 3731
124 Ga0182008_10041231 3300014497 Bacteria 2303
125 Ga0157377_10000067 3300014745 Bacteria 80888
126 Ga0157379_10025726 3300014968 Bacteria 5231
127 Ga0157379_10047493 3300014968 Bacteria 3830
128 Ga0157376_10011258 3300014969 Bacteria 6585
129 Ga0157376_10060186 3300014969 Bacteria 3188
130 Ga0214542_1014176 3300021321 Bacteria 9068
131 Ga0214543_1000015 3300021327 Bacteria 305679
132 Ga0213872_10027235 3300021361 Bacteria 2625
133 Ga0213875_10007310 3300021388 Bacteria 5714
134 Ga0209436_101599 3300025208 Bacteria 7604
135 Ga0207425_1000366 3300025245 Bacteria 31282
136 Ga0207425_1002306 3300025245 Bacteria 6848
137 Ga0209129_1000164 3300025258 Bacteria 98984
138 Ga0209129_1003905 3300025258 Bacteria 6195
139 Ga0209673_1000128 3300025273 Bacteria 164482
140 Ga0209673_1013173 3300025273 Bacteria 3282
141 Ga0209130_1000471 3300025284 Bacteria 41439
142 Ga0209675_1005256 3300025291 Bacteria 5467
143 Ga0209676_1000122 3300025292 Bacteria 195510
144 Ga0209025_1004214 3300025294 Bacteria 12676
145 Ga0209564_1000062 3300025295 Bacteria 321275
146 Ga0209564_1000360 3300025295 Bacteria 84454
147 Ga0209758_1000072 3300025297 Bacteria 277776
148 Ga0209758_1000280 3300025297 Bacteria 101103
149 Ga0209758_1012990 3300025297 Bacteria 4593
150 Ga0209050_1000433 3300025298 Bacteria 76499
151 Ga0209050_1000772 3300025298 Bacteria 45952
152 Ga0209050_1002098 3300025298 Bacteria 18229
153 Ga0209256_1000063 3300025299 Bacteria 252716
154 Ga0207426_1000028 3300025302 Bacteria 483955
155 Ga0209051_1000002 3300025303 Bacteria 1631846
156 Ga0209051_1001033 3300025303 Bacteria 26324
157 Ga0209051_1004612 3300025303 Bacteria 8395
158 Ga0209257_1000002 3300025304 Bacteria 1767052
159 Ga0209257_1025796 3300025304 Bacteria 1998
160 Ga0207642_10007702 3300025899 Bacteria 3647
161 Ga0207643_10062730 3300025908 Bacteria 2123
162 Ga0207654_10003789 3300025911 Bacteria 7624
163 Ga0207707_10012806 3300025912 Bacteria 7296
164 Ga0207695_10030592 3300025913 Bacteria 5923
165 Ga0207671_10006804 3300025914 Bacteria 10101
166 Ga0207671_10098061 3300025914 Bacteria 2216
167 Ga0207671_10119760 3300025914 Bacteria 2011
168 Ga0207694_10047196 3300025924 Bacteria 3331
169 Ga0207687_10034825 3300025927 Bacteria 3422
170 Ga0207687_10037470 3300025927 Bacteria 3309
171 Ga0207687_10105124 3300025927 Bacteria 2085
172 Ga0207706_10003059 3300025933 Bacteria 16105
173 Ga0207686_10028801 3300025934 Bacteria 3268
174 Ga0207686_10030621 3300025934 Bacteria 3188
175 Ga0207709_10000155 3300025935 Bacteria 93200
176 Ga0207709_10000648 3300025935 Bacteria 28257
177 Ga0207709_10028074 3300025935 Bacteria 3250
178 Ga0207670_10004076 3300025936 Bacteria 7825
179 Ga0207704_10006484 3300025938 Bacteria 5460
180 Ga0207711_10022642 3300025941 Bacteria 5256
181 Ga0207689_10005264 3300025942 Bacteria 11596
182 Ga0207689_10011218 3300025942 Bacteria 7690
183 Ga0207689_10113189 3300025942 Bacteria 2231
184 Ga0207667_10003426 3300025949 Bacteria 19572
185 Ga0207667_10008539 3300025949 Bacteria 12156
186 Ga0207703_10010697 3300026035 Bacteria 7164
187 Ga0207703_10025834 3300026035 Bacteria 4622
188 Ga0207708_10000659 3300026075 Bacteria 26455
189 Ga0207641_10057419 3300026088 Bacteria 3310
190 Ga0207648_10000741 3300026089 Bacteria 36624
191 Ga0207648_10000845 3300026089 Bacteria 34563
192 Ga0207648_10025676 3300026089 Bacteria 5245
193 Ga0207648_10026040 3300026089 Bacteria 5201
194 Ga0207648_10084608 3300026089 Bacteria 2767
195 Ga0207674_10018028 3300026116 Bacteria 7689
196 Ga0207675_100000946 3300026118 Bacteria 29002
197 Ga0207675_100009406 3300026118 Bacteria 9157
198 Ga0207683_10105726 3300026121 Bacteria 2516
199 Ga0207698_10155046 3300026142 Bacteria 1994
200 Ga0209179_1006789 3300027512 Bacteria 1862
201 Ga0268266_10275814 3300028379 Bacteria 1562
202 Ga0268265_10009798 3300028380 Bacteria 6468
203 Ga0268265_10089111 3300028380 Bacteria 2460
204 Ga0265336_10000941 3300028666 Bacteria 14722
205 Ga0307517_10000122 3300028786 Bacteria 116429
206 Ga0307515_10000208 3300028794 Bacteria 144484
207 Ga0307515_10000492 3300028794 Bacteria 94501
208 Ga0307515_10005063 3300028794 Bacteria 26793
209 Ga0307515_10069623 3300028794 Bacteria 4804
210 Ga0265324_10000005 3300029957 Bacteria 347038
211 Ga0265324_10003305 3300029957 Bacteria 7749
212 Ga0307512_10099398 3300030522 Bacteria 1980
213 Ga0265332_10003002 3300031238 Bacteria 8279
214 Ga0265325_10002094 3300031241 Bacteria 13630
215 Ga0307513_10018132 3300031456 Bacteria 8422
216 Ga0307509_10000011 3300031507 Bacteria 298257
217 Ga0307509_10001831 3300031507 Bacteria 35184
218 Ga0307509_10011086 3300031507 Bacteria 10974
219 Ga0307509_10065088 3300031507 Bacteria 3831
220 Ga0307509_10119390 3300031507 Bacteria 2618
221 Ga0307508_10000611 3300031616 Bacteria 42821
222 Ga0307514_10008335 3300031649 Bacteria 8850
223 Ga0307514_10156769 3300031649 Bacteria 1516
224 Ga0265314_10019870 3300031711 Bacteria 5195
225 Ga0307516_10000291 3300031730 Bacteria 65095
226 Ga0307516_10004047 3300031730 Bacteria 18368
227 Ga0307516_10041317 3300031730 Bacteria 4584
228 Ga0316593_10021514 3300032168 Bacteria 2017
229 Ga0307507_10029777 3300033179 Bacteria 5779
230 Ga0307510_10014283 3300033180 Bacteria 9402
231 Ga0307510_10049304 3300033180 Bacteria 4480
232 Ga0316596_1003848 3300033541 Bacteria 3323
233 Ga0316596_1005731 3300033541 Bacteria 2853
234 Ga0316596_1031145 3300033541 Bacteria 1385
235 Ga0373949_0000171 3300035090 Bacteria 24781
236 Ga0373937_0034061 3300036401 Bacteria 4631
237 Ga0373937_0060653 3300036401 Bacteria 3476
238 Ga0373925_0111364 3300037068 Bacteria 2115
239 Ga0395905_0160822 3300037471 Bacteria 2110
240 Ga0436364_0990550 3300037853 Bacteria 10081
241 Ga0400488_01533 3300038741 Bacteria 2413
242 Ga0400483_250006 3300039062 Bacteria 6306
243 Ga0400489_44451 3300039093 Bacteria 14917
244 Ga0436361_0626573 3300039447 Bacteria 7075
245 Ga0451789_1212218 3300041443 Bacteria 2625
246 Ga0451793_1283164 3300041452 Bacteria 1817
247 Ga0451800_1007665 3300041459 Bacteria 1673
248 Ga0451802_1592903 3300041460 Bacteria 3108
249 Ga0439431_0016422 3300041997 Bacteria 1732
250 Ga0466972_0009346 3300044658 Bacteria 4928
251 Ga0453684_0081678 3300044712 Bacteria 4030
252 Ga0495592_0002447 3300046454 Bacteria 13094
253 Ga0495650_0005824 3300046471 Bacteria 7854
254 Ga0495610_0024032 3300046512 Bacteria 3296
255 Ga0495632_0002395 3300046519 Bacteria 14299
256 Ga0495632_0004090 3300046519 Bacteria 10059
257 Ga0495632_0019107 3300046519 Bacteria 3740
258 Ga0495668_0098275 3300046616 Bacteria 1602
259 Ga0495625_0003344 3300046660 Bacteria 16138
260 Ga0495588_0031699 3300046674 Bacteria 2662
261 Ga0495649_0002247 3300046694 Bacteria 13718
262 Ga0495660_0032524 3300046810 Bacteria 2929
263 Ga0495687_003674 3300047443 Bacteria 10923
264 Ga0496102_0005116 3300048905 Bacteria 11114
265 Ga0496102_0346443 3300048905 Bacteria 1399
266 Ga0501034_0001060 3300049571 Bacteria 39008
267 Ga0501072_0031046 3300049588 Bacteria 4180
268 nmdc:mga0k408_22036_c1 3300050493 Bacteria 3584
269 nmdc:mga0k408_3938_c1 3300050493 Bacteria 7877
270 nmdc:mga0qj67_80463_c1 3300050509 Bacteria 2610
271 Ga0500610_0001260 3300053079 Bacteria 8482
272 Ga0500578_0000007 3300053086 Bacteria 229642
273 Ga0500578_0022978 3300053086 Bacteria 4005
274 Ga0500578_0077292 3300053086 Bacteria 2119
275 Ga0500644_0047384 3300053088 Bacteria 1457
276 Ga0500566_0003024 3300053094 Bacteria 10055
277 Ga0500623_039057 3300053127 Bacteria 2433
278 Ga0500628_001514 3300053129 Bacteria 3971
279 Ga0500652_000096 3300053131 Bacteria 36026
280 Ga0500587_001892 3300053739 Bacteria 2984
281 Ga0590071_000901 3300059421 Bacteria 8246
282 2599623688 2599185214 Bacteria 8209958
283 2587726523 2585428057 Bacteria 6737412
284 2587733418 2585428058 Bacteria 6853932
285 2587754874 2585428062 Bacteria 6842168
286 2588291029 2588253510 Bacteria 6901809
287 2599671693 2599185226 Bacteria 8233575
288 2599681294 2599185227 Bacteria 8246414
289 2599693303 2599185229 Bacteria 8216126
290 2643972031 2643221592 Bacteria 6608788
291 2644142230 2643221625 Bacteria 6512927
292 2644275924 2643221648 Bacteria 6521465
293 2722883252 2721755523 Bacteria 6430384
294 2770196623 2767802442 Bacteria 5747986
295 2838057521 2838054893 Bacteria 7451788
296 2839142807 2839138175 Bacteria 6549354
297 2842510883 2842509118 Bacteria 6850950
298 2885204490 2885198086 Bacteria 7212419
299 2885218143 2885211737 Bacteria 7212420
300 2928071693 2928070936 Bacteria 8062541
301 2995394358 2995392953 Bacteria 4539380
302 3002142010 3002141150 Bacteria 5254435
303 8016590392 8016583857 Bacteria 10421953
304 JGI25152J39213_1001147
305 JGI25152J39213_1003603
306 JGI25150J39212_1005894
307 JGI25159J45721_1000123
308 JGI25159J45721_1000732
309 JGI25153J46596_10001186
310 JGI25153J46596_10001306
311 JGI25153J46596_10009913
312 JGI25160J50197_1001041
313 Ga0006562J51391_1021488
314 Ga0055526_1005794
315 Ga0055526_1007759
316 Ga0055524_1003162
317 Ga0055536_1000518
318 Ga0055534_1004727
319 Ga0055528_1011311
320 Ga0055530_10000214
321 Ga0055530_10008222
322 Ga0055540_1000862
323 Ga0055540_1008220
324 Ga0055531_10001168
325 Ga0055543_1000810
326 Ga0065165_1002676
327 Ga0065165_1016367
328 Ga0065712_10116765
329 Ga0065715_10109129
330 Ga0070690_100009160
331 Ga0068869_100010040
332 Ga0068869_100010110
333 Ga0068869_100035522
334 Ga0068868_100023560
335 Ga0070689_100015318
336 Ga0070691_10003023
337 Ga0070675_100035893
338 Ga0070673_100066800
339 Ga0070659_100088720
340 Ga0070701_10004821
341 Ga0070700_100002497
342 Ga0070700_100010355
343 Ga0070694_100114579
344 Ga0070694_100255958
345 Ga0070678_100024181
346 Ga0070678_100030883
347 Ga0070678_100068292
348 Ga0070662_100001705
349 Ga0070681_10003410
350 Ga0068867_100000034
351 Ga0068867_100002483
352 Ga0068867_100030308
353 Ga0068867_100031602
354 Ga0068853_100009130
355 Ga0068853_100010540
356 Ga0070686_100013566
357 Ga0070693_100033175
358 Ga0070665_100095464
359 Ga0070704_100058348
360 Ga0068855_100000355
361 Ga0068855_100038845
362 Ga0068857_100067278
363 Ga0070702_100004369
364 Ga0068859_100034051
365 Ga0068859_100037995
366 Ga0068859_100153016
367 Ga0068859_100166759
368 Ga0068864_100013091
369 Ga0068864_100013132
370 Ga0068866_10002113
371 Ga0068861_100011391
372 Ga0068870_10030239
373 Ga0068863_100009429
374 Ga0068858_100032310
375 Ga0068858_100035930
376 Ga0068858_100051763
377 Ga0068860_100209906
378 Ga0068860_100225532
379 Ga0068862_100037476
380 Ga0068862_100053237
381 Ga0081538_10026926
382 Ga0075367_10080774
383 Ga0075369_10071982
384 Ga0075366_10024350
385 Ga0075366_10130647
386 Ga0097621_100004091
387 Ga0097621_100104879
388 Ga0068871_100003419
389 Ga0068871_100020787
390 Ga0068865_100016301
391 Ga0068865_100100290
392 Ga0097620_100034052
393 Ga0097620_100037994
394 Ga0097620_100153020
395 Ga0097620_100166765
396 Ga0099795_10011570
397 Ga0105240_10002442
398 Ga0105240_10033195
399 Ga0105245_10028883
400 Ga0105245_10041119
401 Ga0105245_10078446
402 Ga0105243_10000467
403 Ga0105243_10001502
404 Ga0105243_10018069
405 Ga0105241_10003783
406 Ga0105241_10184153
407 Ga0105242_10006915
408 Ga0105242_10048945
409 Ga0105248_10022822
410 Ga0105248_10029747
411 Ga0105237_10001836
412 Ga0105237_10167167
413 Ga0105238_10017215
414 Ga0105238_10165871
415 Ga0105238_10284365
416 Ga0105249_10050013
417 Ga0105249_10275986
418 Ga0105239_10001156
419 Ga0105239_10042806
420 Ga0157370_10016933
421 Ga0157378_10004902
422 Ga0157378_10036362
423 Ga0157378_10068363
424 Ga0163162_10322628
425 Ga0157375_10011843
426 Ga0157380_10038099
427 Ga0182008_10041231
428 Ga0157377_10000067
429 Ga0157379_10025726
430 Ga0157379_10047493
431 Ga0157376_10011258
432 Ga0157376_10060186
433 Ga0214542_1014176
434 Ga0214543_1000015
435 Ga0213872_10027235
436 Ga0213875_10007310
437 Ga0209436_101599
438 Ga0207425_1000366
439 Ga0207425_1002306
440 Ga0209129_1000164
441 Ga0209129_1003905
442 Ga0209673_1000128
443 Ga0209673_1013173
444 Ga0209130_1000471
445 Ga0209675_1005256
446 Ga0209676_1000122
447 Ga0209025_1004214
448 Ga0209564_1000062
449 Ga0209564_1000360
450 Ga0209758_1000072
451 Ga0209758_1000280
452 Ga0209758_1012990
453 Ga0209050_1000433
454 Ga0209050_1000772
455 Ga0209050_1002098
456 Ga0209256_1000063
457 Ga0207426_1000028
458 Ga0209051_1000002
459 Ga0209051_1001033
460 Ga0209051_1004612
461 Ga0209257_1000002
462 Ga0209257_1025796
463 Ga0207642_10007702
464 Ga0207643_10062730
465 Ga0207654_10003789
466 Ga0207707_10012806
467 Ga0207695_10030592
468 Ga0207671_10006804
469 Ga0207671_10098061
470 Ga0207671_10119760
471 Ga0207694_10047196
472 Ga0207687_10034825
473 Ga0207687_10037470
474 Ga0207687_10105124
475 Ga0207706_10003059
476 Ga0207686_10028801
477 Ga0207686_10030621
478 Ga0207709_10000155
479 Ga0207709_10000648
480 Ga0207709_10028074
481 Ga0207670_10004076
482 Ga0207704_10006484
483 Ga0207711_10022642
484 Ga0207689_10005264
485 Ga0207689_10011218
486 Ga0207689_10113189
487 Ga0207667_10003426
488 Ga0207667_10008539
489 Ga0207703_10010697
490 Ga0207703_10025834
491 Ga0207708_10000659
492 Ga0207641_10057419
493 Ga0207648_10000741
494 Ga0207648_10000845
495 Ga0207648_10025676
496 Ga0207648_10026040
497 Ga0207648_10084608
498 Ga0207674_10018028
499 Ga0207675_100000946
500 Ga0207675_100009406
501 Ga0207683_10105726
502 Ga0207698_10155046
503 Ga0209179_1006789
504 Ga0268266_10275814
505 Ga0268265_10009798
506 Ga0268265_10089111
507 Ga0265336_10000941
508 Ga0307517_10000122
509 Ga0307515_10000208
510 Ga0307515_10000492
511 Ga0307515_10005063
512 Ga0307515_10069623
513 Ga0265324_10000005
514 Ga0265324_10003305
515 Ga0307512_10099398
516 Ga0265332_10003002
517 Ga0265325_10002094
518 Ga0307513_10018132
519 Ga0307509_10000011
520 Ga0307509_10001831
521 Ga0307509_10011086
522 Ga0307509_10065088
523 Ga0307509_10119390
524 Ga0307508_10000611
525 Ga0307514_10008335
526 Ga0307514_10156769
527 Ga0265314_10019870
528 Ga0307516_10000291
529 Ga0307516_10004047
530 Ga0307516_10041317
531 Ga0316593_10021514
532 Ga0307507_10029777
533 Ga0307510_10014283
534 Ga0307510_10049304
535 Ga0316596_1003848
536 Ga0316596_1005731
537 Ga0316596_1031145
538 Ga0373949_0000171
539 Ga0373937_0034061
540 Ga0373937_0060653
541 Ga0373925_0111364
542 Ga0395905_0160822
543 Ga0436364_0990550
544 Ga0400488_01533
545 Ga0400483_250006
546 Ga0400489_44451
547 Ga0436361_0626573
548 Ga0451789_1212218
549 Ga0451793_1283164
550 Ga0451800_1007665
551 Ga0451802_1592903
552 Ga0439431_0016422
553 Ga0466972_0009346
554 Ga0453684_0081678
555 Ga0495592_0002447
556 Ga0495650_0005824
557 Ga0495610_0024032
558 Ga0495632_0002395
559 Ga0495632_0004090
560 Ga0495632_0019107
561 Ga0495668_0098275
562 Ga0495625_0003344
563 Ga0495588_0031699
564 Ga0495649_0002247
565 Ga0495660_0032524
566 Ga0495687_003674
567 Ga0496102_0005116
568 Ga0496102_0346443
569 Ga0501034_0001060
570 Ga0501072_0031046
571 nmdc:mga0k408_22036_c1
572 nmdc:mga0k408_3938_c1
573 nmdc:mga0qj67_80463_c1
574 Ga0500610_0001260
575 Ga0500578_0000007
576 Ga0500578_0022978
577 Ga0500578_0077292
578 Ga0500644_0047384
579 Ga0500566_0003024
580 Ga0500623_039057
581 Ga0500628_001514
582 Ga0500652_000096
583 Ga0500587_001892
584 Ga0590071_000901
585 2599623688
586 2587726523
587 2587733418
588 2587754874
589 2588291029
590 2599671693
591 2599681294
592 2599693303
593 2643972031
594 2644142230
595 2644275924
596 2722883252
597 2770196623
598 2838057521
599 2839142807
600 2842510883
601 2885204490
602 2885218143
603 2928071693
604 2995394358
605 3002142010
606 8016590392

MSA Aligner

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Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF01547

SBP_bac_1

Bacterial extracellular solute-binding protein

81

373

0.9

Structural Annotation

Top 5 Hits

ID Description Score Start End
5dvf-assembly2.cif.gz_B crystal structure of unliganded periplasmic glucose binding protein (ppgbp) from p. putida csv86 0.9651 25 415
4r2b-assembly2.cif.gz_B crystal structure of sugar transporter oant_3817 from ochrobactrum anthropi, target efi-510528, with bound glucose 0.9624 25 415
5xpj-assembly2.cif.gz_B crystal structure of periplasmic glucose binding protein ppgbp deletion mutant- del-ppgbp 0.9612 25 415
5xpj-assembly1.cif.gz_A crystal structure of periplasmic glucose binding protein ppgbp deletion mutant- del-ppgbp 0.9588 25 415
5dvf-assembly2.cif.gz_B crystal structure of unliganded periplasmic glucose binding protein (ppgbp) from p. putida csv86 0.953 25 415
ID Description Score Start End Superfamily
4r2bB01 Alpha Beta;3-Layer(aba) Sandwich;D-Maltodextrin-Binding Protein; domain 2;Periplasmic binding protein-like II 0.9593 25 374 3.40.190.10
5xpjB01 Alpha Beta;3-Layer(aba) Sandwich;D-Maltodextrin-Binding Protein; domain 2;Periplasmic binding protein-like II 0.9463 25 367 3.40.190.10
4r2bB01 Alpha Beta;3-Layer(aba) Sandwich;D-Maltodextrin-Binding Protein; domain 2;Periplasmic binding protein-like II 0.9357 25 374 3.40.190.10
5xpjB02 Alpha Beta;3-Layer(aba) Sandwich;D-Maltodextrin-Binding Protein; domain 2;Periplasmic binding protein-like II 0.9345 144 415 3.40.190.10
2b3bA02 Alpha Beta;3-Layer(aba) Sandwich;D-Maltodextrin-Binding Protein; domain 2;Periplasmic binding protein-like II 0.9127 144 415 3.40.190.10
ID Description Score Start End GO Terms
AF-A0A529I6U0-F1-model_v4 Sugar ABC transporter substrate-binding protein 0.9879 196 415
AF-A0A7U8JU47-F1-model_v4 deleted 0.9866 88 415
AF-A0A530MN70-F1-model_v4 deleted 0.982 223 415
AF-A0A7U6J5D4-F1-model_v4 deleted 0.974 127 415
AF-A0A432N7D6-F1-model_v4 Probable sugar-binding periplasmic protein 0.9735 47 415 GO:0042597

Map