F407208

General Info

Members Datasets Scaffolds Average Seq Length
324 224 648 368

Family's Representative Sequence

Representative Sequence 3300005331|Ga0070670_100000454|Ga0070670_10000045414
Length 396
Sequence MYLRRSSNIFPVRSEPNRLHGTQHQVNEMKTVGFVGWRGMVGSVLMERMQAENDFEGIEPVFFTTSNVGGAGPVFAGGAPLKDANSIDELKKLDAIISCQGGDYTTEVFPKLRAVGWQGYWIDAASTLRMENDAIIILDPVNGDLIRDGIKRGVKNFIGGNCTNSILLMGVNGLFREGLVEWVSSMTYQAASGGGANHMRELLKGMGVIHASVADQLATPSSSIIDIDRKVAQTIREDVPHEFFDAPLAGGLIPWIDKQLDNGQSKEEWKGQAEVNKILGTEKTIPVDGLCVRIGAMRCHSLALTLKLKKDLPLAEIEALIESGNPWVKWVPNQREITAKELTPASITGGLEIGVGRVRKLNMGPEYLSAFVIGDQLLWGAAEPLRRMLRILRETV

Samples

Sample ID Description Type Environment
1 3300005331 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG Metagenome Rhizosphere
2 3300001915 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C7 Metagenome Rhizosphere
3 3300001979 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6 Metagenome Rhizosphere
4 3300002705 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mMS Metagenome Unclassified
5 3300002738 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mTSA Metagenome Unclassified
6 3300002741 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mCL Metagenome Unclassified
7 3300003323 Sugarcane root Sample H1 Metagenome Unclassified
8 3300003565 Arabidopsis rhizosphere microbial communities from the University of North Carolina, USA - metaT NBMF1_16_lowP_mix3_d2 (Metagenome Metatranscriptome, Counting Only) Metatranscriptome Rhizosphere
9 3300003578 Arabidopsis root microbial communities from the University of North Carolina, USA - metaT NBMF1_36_input_d2 (Metagenome Metatranscriptome, Counting Only) Metatranscriptome Unclassified
10 3300003751 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mLB_r2 Metagenome Endosphere
11 3300003752 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mCL_r2 Metagenome Endosphere
12 3300003756 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mMS_r2 Metagenome Endosphere
13 3300003758 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mLB_r2 Metagenome Endosphere
14 3300003759 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mMF_r2 Metagenome Endosphere
15 3300003760 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mMS_r2 Metagenome Endosphere
16 3300003761 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mTSA_r2 Metagenome Endosphere
17 3300003762 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mMF_r2 Metagenome Endosphere
18 3300003763 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mCL_r2 Metagenome Endosphere
19 3300003841 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mTSA_r2 Metagenome Endosphere
20 3300005289 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 v2 (version 2) Metagenome Rhizosphere
21 3300005335 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG Metagenome Rhizosphere
22 3300005344 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG Metagenome Rhizosphere
23 3300005353 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG Metagenome Rhizosphere
24 3300005355 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG Metagenome Rhizosphere
25 3300005365 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3H metaG Metagenome Rhizosphere
26 3300005366 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG Metagenome Rhizosphere
27 3300005367 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG Metagenome Rhizosphere
28 3300005455 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG Metagenome Rhizosphere
29 3300005458 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG Metagenome Rhizosphere
30 3300005466 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3L metaG Metagenome Rhizosphere
31 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
32 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
33 3300005564 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG Metagenome Rhizosphere
34 3300005577 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 Metagenome Rhizosphere
35 3300005578 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 Metagenome Rhizosphere
36 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
37 3300005616 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 Metagenome Rhizosphere
38 3300005617 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 Metagenome Rhizosphere
39 3300005618 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 Metagenome Rhizosphere
40 3300005842 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 Metagenome Rhizosphere
41 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
42 3300005844 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 Metagenome Rhizosphere
43 3300006931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 (version 2) (version 2) Metagenome Rhizosphere
44 3300006946 Root nodule microbial communities of legume samples collected from California, USA - Medicago truncatula BG Metagenome Nodule
45 3300007265 Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1 Metagenome Rhizosphere
46 3300007788 Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_2 Metagenome Rhizosphere
47 3300009092 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-4 metaG Metagenome Rhizosphere
48 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
49 3300009101 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG Metagenome Rhizosphere
50 3300009148 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG Metagenome Rhizosphere
51 3300009174 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG Metagenome Rhizosphere
52 3300009177 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG Metagenome Rhizosphere
53 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
54 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
55 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
56 3300013100 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6-5 metaG Metagenome Rhizosphere
57 3300013102 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG Metagenome Rhizosphere
58 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
59 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
60 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
61 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
62 3300014325 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG Metagenome Rhizosphere
63 3300014497 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-129_1 metaG Metagenome Rhizosphere
64 3300015261 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-104_1 MetaG Metagenome Rhizosphere
65 3300020070 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-1 (Metagenome Metatranscriptome) (v2) (version 2) Metatranscriptome Rhizosphere
66 3300020075 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5pm-5 (Metagenome Metatranscriptome) (v2) (version 2) Metatranscriptome Rhizosphere
67 3300020076 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-2 (Metagenome Metatranscriptome) (v3) (version 3) Metatranscriptome Rhizosphere
68 3300020077 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5pm-1 (Metagenome Metatranscriptome) (v2) (version 2) Metatranscriptome Rhizosphere
69 3300020080 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5pm-4 (Metagenome Metatranscriptome) (v2) (version 2) Metatranscriptome Rhizosphere
70 3300020610 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5pm-1 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
71 3300021361 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2 Metagenome Rhizosphere
72 3300022467 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5pm-2 (Metagenome Metatranscriptome) (v2) (version 2) Metatranscriptome Rhizosphere
73 3300025206 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mLB (SPAdes) (version 2) Metagenome Unclassified
74 3300025224 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mLB_r2 (SPAdes) (version 2) Metagenome Endosphere
75 3300025225 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mTSA_r2 (SPAdes) (version 2) Metagenome Endosphere
76 3300025226 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mMS_r2 (SPAdes) (version 2) Metagenome Endosphere
77 3300025228 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mMS_r2 (SPAdes) (version 2) Metagenome Endosphere
78 3300025229 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mLB_r2 (SPAdes) (version 2) Metagenome Endosphere
79 3300025230 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mMF_r2 (SPAdes) (version 2) Metagenome Endosphere
80 3300025233 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mTSA (SPAdes) (version 2) Metagenome Endosphere
81 3300025242 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mTSA_r2 (SPAdes) (version 2) Metagenome Endosphere
82 3300025246 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mTSA (SPAdes) (version 2) Metagenome Unclassified
83 3300025250 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mCL (SPAdes) (version 2) Metagenome Unclassified
84 3300025253 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
85 3300025254 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mMF_r2 (SPAdes) (version 2) Metagenome Endosphere
86 3300025256 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mMS (SPAdes) (version 2) Metagenome Unclassified
87 3300025272 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
88 3300025900 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
89 3300025903 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
90 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
91 3300025920 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
92 3300025923 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
93 3300025924 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
94 3300025925 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
95 3300025931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
96 3300025932 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
97 3300025935 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
98 3300025938 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 (SPAdes) (version 2) Metagenome Rhizosphere
99 3300025941 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
100 3300025945 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
101 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
102 3300025981 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 (SPAdes) (version 2) Metagenome Rhizosphere
103 3300025986 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
104 3300026035 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes) (version 2) Metagenome Rhizosphere
105 3300026067 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
106 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
107 3300026088 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes) (version 2) Metagenome Rhizosphere
108 3300026095 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes) (version 2) Metagenome Rhizosphere
109 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
110 3300027111 Root nodule microbial communities of legume samples collected from California, USA - Medicago truncatula BG (SPAdes) (version 2) Metagenome Nodule
111 3300027671 Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1 (SPAdes) (version 2) Metagenome Rhizosphere
112 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
113 3300028380 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes) (version 2) Metagenome Rhizosphere
114 3300028381 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) Metagenome Rhizosphere
115 3300028558 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-14-24 metaG Metagenome Rhizosphere
116 3300031251 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-21 metaG Metagenome Rhizosphere
117 3300031548 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3 Metagenome Rhizosphere
118 3300031665 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J5-7_050615r2r3 Metagenome Rhizosphere
119 3300031691 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J5-7_160517rDrA Metagenome Rhizosphere
120 3300031727 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_050615r3r5 Metagenome Rhizosphere
121 3300031728 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_160517rDrC Metagenome Rhizosphere
122 3300031733 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S5-7_050615r2r1 Metagenome Rhizosphere
123 3300032133 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J_170502JBrBrA Metagenome Rhizosphere
124 3300032137 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S_170502SCrBrC Metagenome Rhizosphere
125 3300032139 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_160517rDrB Metagenome Rhizosphere
126 3300032168 Metatranscriptome of rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S5-7_160517rA (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
127 3300033524 Metatranscriptome of rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_160517rDrB (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
128 3300033527 Metatranscriptome of rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_050615r2r1 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
129 3300033528 Metatranscriptome of rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_050615r3r5 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
130 3300033529 Metatranscriptome of rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J5-7_050615r2r3 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
131 3300033541 Metatranscriptome of rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S_170502SBrCrA (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
132 3300035086 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_4 Metagenome Rhizosphere
133 3300035118 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_N_2 Metagenome Rhizosphere
134 3300035119 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_N_4 Metagenome Rhizosphere
135 3300035120 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_N_5 Metagenome Rhizosphere
136 3300035172 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_N_3 Metagenome Rhizosphere
137 3300035398 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_050615r2r1 Metagenome Rhizosphere
138 3300035724 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_1 Metagenome Rhizosphere
139 3300036401 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_16 Metagenome Rhizosphere
140 3300036647 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J_170502JArCrA Metagenome Rhizosphere
141 3300036712 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S_170502SBrCrA Metagenome Rhizosphere
142 3300037312 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_B SG_2 Metagenome Rhizosphere
143 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
144 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
145 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
146 3300038726 Seagrass microbial communities from Seahorse Key, FL, USA - TH0319 Metagenome Unclassified
147 3300038727 Seagrass microbial communities from Seahorse Key, FL, USA - TV0818 Metagenome Unclassified
148 3300038735 Seagrass microbial communities from Seahorse Key, FL, USA - SH0319 Metagenome Unclassified
149 3300039062 Seagrass microbial communities from Seahorse Key, FL, USA - HH0818 Metagenome Unclassified
150 3300039447 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2 v2 Metagenome Rhizosphere
151 3300044658 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC1R Metagenome Rhizosphere
152 3300044673 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Bulk_9BB_GED Metagenome Rhizosphere
153 3300044693 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC2R Metagenome Rhizosphere
154 3300044706 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA3R Metagenome Rhizosphere
155 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
156 3300044901 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA4R Metagenome Rhizosphere
157 3300045049 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC3R Metagenome Rhizosphere
158 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
159 3300045976 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA4R Metagenome Rhizosphere
160 3300046454 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-198-CL2_38_5 rhizosphere Metagenome Rhizosphere
161 3300046462 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-86-CL2_69_17 rhizosphere Metagenome Rhizosphere
162 3300046516 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL1_35_3 rhizosphere Metagenome Rhizosphere
163 3300046529 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-866-CL2_50_11 rhizosphere Metagenome Rhizosphere
164 3300046542 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co2_52_27 rhizosphere Metagenome Rhizosphere
165 3300046543 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL1_28_5 rhizosphere Metagenome Rhizosphere
166 3300046675 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-904-CL2_57_20 rhizosphere Metagenome Rhizosphere
167 3300046678 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-258-CL1_34_5 rhizosphere Metagenome Rhizosphere
168 3300048927 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_4e N15 Metagenome Unclassified
169 3300048928 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_5e N15 Metagenome Unclassified
170 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
171 3300049568 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_01 Metagenome Rhizosphere
172 3300049656 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - G3_B_0_drought Metagenome Rhizosphere
173 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
174 3300053077 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL1_33_12 rhizosphere Metagenome Rhizosphere
175 3300053098 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co1_16_8 endosphere Metagenome Endosphere
176 3300053119 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL1_25_34 endosphere Metagenome Endosphere
177 3300053125 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL1_28_5 endosphere Metagenome Endosphere
178 3300059477 Metatranscriptome of rhizosphere soil microbial communities from Hall's panicgrass in greenhouse, Berkeley, CA, USA - 50R_CW_T2_R1 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
179 3300059504 Metatranscriptome of rhizosphere soil microbial communities from Hall's panicgrass in greenhouse, Berkeley, CA, USA - 23R_SD_T1_R3 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
180 3300059508 Metatranscriptome of rhizosphere soil microbial communities from Hall's panicgrass in greenhouse, Berkeley, CA, USA - 53R_CD_T2_R1 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
181 3300059511 Metatranscriptome of rhizosphere soil microbial communities from Hall's panicgrass in greenhouse, Berkeley, CA, USA - 56R_CD_T2_R4 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
182 3300059640 Metatranscriptome of rhizosphere soil microbial communities from Hall's panicgrass in greenhouse, Berkeley, CA, USA - 8R_CD_T1_R4 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
183 3300059643 Metatranscriptome of rhizosphere soil microbial communities from Hall's panicgrass in greenhouse, Berkeley, CA, USA - 13R_AD_T1_R1 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
184 3300059645 Metatranscriptome of rhizosphere soil microbial communities from Hall's panicgrass in greenhouse, Berkeley, CA, USA - 18R_SW_T1_R1 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
185 2511231003 Herbaspirillum sp. CF444 Isolate Rhizosphere
186 2511231026 Herbaspirillum sp. YR522 Isolate Rhizosphere
187 2521172590 Herbaspirillum sp. GW103 Isolate Rhizosphere
188 2548876994 Herbaspirillum lusitanum P6-12 Isolate Nodule
189 2551306416 Herbaspirillum seropedicae Os34 Isolate Unclassified
190 2596583598 Ralstonia sp. UNCCL144 Isolate Unclassified
191 2599185178 Ralstonia sp. NFACC01 Isolate Rhizoplane
192 2648501241 Vibrio splendidus UCD-SED7 Isolate Rhizosphere
193 2651869818 Vibrio splendidus UCD-SED10 Isolate Rhizosphere
194 2721755523 Delftia sp. HK171 Isolate Unclassified
195 2738541276 Cellvibrio sp. YR554 Isolate Unclassified
196 2765235838 Herbaspirillum robiniae AA6 Isolate Unclassified
197 2808606386 Herbaspirillum sp. SJZ099 Isolate Rhizosphere
198 2808606415 Herbaspirillum sp. SJZ130 Isolate Rhizosphere
199 2808606419 Herbaspirillum sp. SJZ106 Isolate Rhizosphere
200 2818991445 Herbaspirillum hiltneri 3195 Isolate Unclassified
201 2818991449 Herbaspirillum huttiense 1147 Isolate Unclassified
202 2839094727 Herbaspirillum robiniae HZ10 Isolate Nodule
203 2839138175 Delftia acidovorans B15 Isolate Rhizosphere
204 2846033681 Chromobacterium sinusclupearum MWU13-2610 Isolate Rhizosphere
205 2846037992 Chromobacterium alticapitis MWU14-2602 Isolate Rhizosphere
206 2852618963 Herbaspirillum sp. SJZ102 Isolate Rhizosphere
207 2884811622 Herbaspirillum sp. 3C11 Isolate Unclassified
208 2884836552 Herbaspirillum sp. 3R-11 Isolate Unclassified
209 2884852848 Herbaspirillum sp. 3R11 Isolate Unclassified
210 2896154374 Herbaspirillum sp. 3R-3a1 Isolate Nodule
211 2900577576 Ralstonia sp. TCR112 Isolate Rhizosphere
212 2904439833 Herbaspirillum sp. 1589 Isolate Rhizosphere
213 2904479285 Comamonas sediminis 4487 Isolate Rhizosphere
214 2904530477 Herbaspirillum huttiense 611 Isolate Unclassified
215 2904584206 Herbaspirillum sp. 1050 Isolate Unclassified
216 2904589729 Herbaspirillum sp. 1130 Isolate Unclassified
217 2904601388 Herbaspirillum sp. 1273 Isolate Rhizosphere
218 2919046199 Herbaspirillum frisingense 596 Isolate Unclassified
219 2919079590 Herbaspirillum sp. 1173 Isolate Unclassified
220 2923510766 Herbaspirillum rubrisubalbicans SLBN-127 Isolate Rhizosphere
221 2928058823 Ralstonia sp. 1138 Isolate Unclassified
222 2928130867 Herbaspirillum seropedicae 1977 Isolate Unclassified
223 2932422444 Comamonas sp. 4034 Isolate Rhizosphere
224 2998344455 Vogesella urethralis SLBN-145 Isolate Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 75
Metatranscriptomes 12.35
Isolates 12.65

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 12.96
Nodule 1.54
Rhizoplane 0.31
Rhizosphere 72.53
Stem 0
Stem Tuber 0
Unclassified 0

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0070670_100000454 3300005331 Bacteria 33113
2 JGI24741J21665_1000278 3300001915 Bacteria 15395
3 JGI24740J21852_10006377 3300001979 Bacteria 4890
4 JGI25156J39149_1003878 3300002705 Bacteria 4747
5 JGI25154J39366_1000130 3300002738 Bacteria 59127
6 JGI25157J39369_1000206 3300002741 Bacteria 49227
7 rootH1_10026054 3300003323 Bacteria 30471
8 Ga0006560J51390_1021601 3300003565 Bacteria 1774
9 Ga0006562J51391_1024019 3300003578 Bacteria 6660
10 Ga0055538_1000054 3300003751 Bacteria 123566
11 Ga0055539_1000066 3300003752 Bacteria 136557
12 Ga0055539_1000095 3300003752 Bacteria 102639
13 Ga0055533_1000076 3300003756 Bacteria 136557
14 Ga0055533_1001900 3300003756 Bacteria 5186
15 Ga0055532_1000058 3300003758 Bacteria 153303
16 Ga0055532_1000097 3300003758 Bacteria 98781
17 Ga0055525_1000098 3300003759 Bacteria 136557
18 Ga0055525_1000334 3300003759 Bacteria 35136
19 Ga0055527_1001152 3300003760 Bacteria 6010
20 Ga0055535_1000041 3300003761 Bacteria 153303
21 Ga0055542_1000834 3300003762 Bacteria 21913
22 Ga0055542_1001575 3300003762 Bacteria 10628
23 Ga0055529_1000077 3300003763 Bacteria 153303
24 Ga0055541_1000056 3300003841 Bacteria 123566
25 Ga0065704_10087020 3300005289 Bacteria 3059
26 Ga0070670_100148030 3300005331 Bacteria 2032
27 Ga0070666_10090840 3300005335 Bacteria 2097
28 Ga0070661_100000085 3300005344 Bacteria 74949
29 Ga0070669_100003624 3300005353 Bacteria 11139
30 Ga0070671_100000026 3300005355 Bacteria 120482
31 Ga0070688_100000735 3300005365 Bacteria 16173
32 Ga0070659_100009969 3300005366 Bacteria 6990
33 Ga0070667_100000676 3300005367 Bacteria 33113
34 Ga0070663_100000028 3300005455 Bacteria 82427
35 Ga0070681_10147399 3300005458 Bacteria 2282
36 Ga0070685_10000044 3300005466 Bacteria 74685
37 Ga0070665_100025335 3300005548 Bacteria 5977
38 Ga0068855_100014819 3300005563 Bacteria 9388
39 Ga0068855_100016531 3300005563 Bacteria 8875
40 Ga0068855_100300998 3300005563 Bacteria 1776
41 Ga0070664_100000020 3300005564 Bacteria 119858
42 Ga0068857_100008701 3300005577 Bacteria 8785
43 Ga0068854_100000192 3300005578 Bacteria 40988
44 Ga0068856_100000802 3300005614 Bacteria 33916
45 Ga0068856_100031035 3300005614 Bacteria 5227
46 Ga0068852_100079340 3300005616 Bacteria 2908
47 Ga0068859_100012930 3300005617 Bacteria 8385
48 Ga0068864_100000520 3300005618 Bacteria 33113
49 Ga0068858_100041250 3300005842 Bacteria 4280
50 Ga0068858_100056123 3300005842 Bacteria 3641
51 Ga0068860_100000910 3300005843 Bacteria 32798
52 Ga0068862_100002045 3300005844 Bacteria 18241
53 Ga0068862_100366197 3300005844 Bacteria 1341
54 Ga0097620_100012929 3300006931 Bacteria 8385
55 Ga0079104_1000002 3300006946 Bacteria 514469
56 Ga0099794_10012894 3300007265 Bacteria 3623
57 Ga0099794_10105896 3300007265 Bacteria 1406
58 Ga0099795_10010157 3300007788 Bacteria 2760
59 Ga0105250_10001110 3300009092 Bacteria 15175
60 Ga0105240_10019329 3300009093 Bacteria 9104
61 Ga0105240_10024497 3300009093 Bacteria 7952
62 Ga0105247_10019482 3300009101 Bacteria 4073
63 Ga0105243_10002783 3300009148 Bacteria 14526
64 Ga0105241_10203329 3300009174 Bacteria 1656
65 Ga0105248_10179439 3300009177 Bacteria 2386
66 Ga0105248_10270804 3300009177 Bacteria 1912
67 Ga0105237_10034390 3300009545 Bacteria 5132
68 Ga0105238_10001204 3300009551 Bacteria 26075
69 Ga0105238_10026269 3300009551 Bacteria 5934
70 Ga0105239_10009281 3300010375 Bacteria 11121
71 Ga0157373_10007796 3300013100 Bacteria 7960
72 Ga0157371_10000082 3300013102 Bacteria 149981
73 Ga0157370_10000089 3300013104 Bacteria 103347
74 Ga0157369_10031076 3300013105 Bacteria 5885
75 Ga0163162_10064098 3300013306 Bacteria 3720
76 Ga0157372_10000122 3300013307 Bacteria 83503
77 Ga0163163_10000342 3300014325 Bacteria 45042
78 Ga0182008_10008592 3300014497 Bacteria 5564
79 Ga0182006_1003804 3300015261 Bacteria 7586
80 Ga0206356_11765033 3300020070 Bacteria 1406
81 Ga0206349_1142056 3300020075 Bacteria 2698
82 Ga0206355_1417348 3300020076 Bacteria 2928
83 Ga0206351_10877176 3300020077 Bacteria 8157
84 Ga0206350_11470775 3300020080 Bacteria 2821
85 Ga0154015_1191932 3300020610 Bacteria 8941
86 Ga0213872_10002904 3300021361 Bacteria 9745
87 Ga0213872_10019315 3300021361 Bacteria 3139
88 Ga0224712_10083290 3300022467 Bacteria 1325
89 Ga0209435_100040 3300025206 Bacteria 115475
90 Ga0209435_100387 3300025206 Bacteria 9648
91 Ga0209784_100002 3300025224 Bacteria 1753105
92 Ga0209784_100055 3300025224 Bacteria 177507
93 Ga0209784_100258 3300025224 Bacteria 33060
94 Ga0209566_100002 3300025225 Bacteria 2614868
95 Ga0209566_100003 3300025225 Bacteria 1753105
96 Ga0209566_100966 3300025225 Bacteria 12728
97 Ga0209566_100984 3300025225 Bacteria 12542
98 Ga0209674_100004 3300025226 Bacteria 1753105
99 Ga0209674_100090 3300025226 Bacteria 175563
100 Ga0209674_100264 3300025226 Bacteria 41417
101 Ga0209672_100122 3300025228 Bacteria 81984
102 Ga0209147_100002 3300025229 Bacteria 2158988
103 Ga0209147_100141 3300025229 Bacteria 115466
104 Ga0209563_100006 3300025230 Bacteria 1753105
105 Ga0209563_100095 3300025230 Bacteria 165592
106 Ga0209563_102263 3300025230 Bacteria 4447
107 Ga0209437_100229 3300025233 Bacteria 95900
108 Ga0209258_100002 3300025242 Bacteria 2158988
109 Ga0209258_100346 3300025242 Bacteria 66811
110 Ga0209646_1000019 3300025246 Bacteria 475248
111 Ga0209646_1000218 3300025246 Bacteria 62078
112 Ga0209026_1000534 3300025250 Bacteria 26239
113 Ga0209026_1003442 3300025250 Bacteria 5176
114 Ga0209677_100003 3300025253 Bacteria 1753105
115 Ga0209677_100208 3300025253 Bacteria 45576
116 Ga0209148_1000118 3300025254 Bacteria 188330
117 Ga0209148_1002036 3300025254 Bacteria 7847
118 Ga0209759_1002058 3300025256 Bacteria 9431
119 Ga0209759_1008936 3300025256 Bacteria 3080
120 Ga0209455_1000009 3300025272 Bacteria 1042273
121 Ga0207710_10003154 3300025900 Bacteria 7383
122 Ga0207680_10053163 3300025903 Bacteria 2430
123 Ga0207695_10001497 3300025913 Bacteria 38881
124 Ga0207695_10015511 3300025913 Bacteria 8966
125 Ga0207695_10023563 3300025913 Bacteria 6950
126 Ga0207649_10000290 3300025920 Bacteria 39130
127 Ga0207681_10002737 3300025923 Bacteria 11161
128 Ga0207694_10000532 3300025924 Bacteria 34516
129 Ga0207650_10000081 3300025925 Bacteria 129104
130 Ga0207644_10000065 3300025931 Bacteria 76549
131 Ga0207690_10005613 3300025932 Bacteria 7415
132 Ga0207709_10000015 3300025935 Bacteria 493221
133 Ga0207704_10062796 3300025938 Bacteria 2312
134 Ga0207711_10000326 3300025941 Bacteria 50831
135 Ga0207711_10001744 3300025941 Bacteria 19945
136 Ga0207679_10000028 3300025945 Bacteria 187787
137 Ga0207667_10000334 3300025949 Bacteria 64711
138 Ga0207640_10000078 3300025981 Bacteria 75735
139 Ga0207658_10000051 3300025986 Bacteria 129104
140 Ga0207703_10036956 3300026035 Bacteria 3889
141 Ga0207703_10241835 3300026035 Bacteria 1623
142 Ga0207678_10000787 3300026067 Bacteria 29012
143 Ga0207702_10000149 3300026078 Bacteria 81592
144 Ga0207702_10038626 3300026078 Bacteria 3998
145 Ga0207641_10007124 3300026088 Bacteria 9340
146 Ga0207641_10014345 3300026088 Bacteria 6494
147 Ga0207676_10000053 3300026095 Bacteria 129104
148 Ga0207674_10009496 3300026116 Bacteria 11107
149 Ga0209281_1000007 3300027111 Bacteria 938265
150 Ga0209588_1006411 3300027671 Bacteria 3419
151 Ga0268266_10005337 3300028379 Bacteria 12025
152 Ga0268266_10268479 3300028379 Bacteria 1583
153 Ga0268265_10000390 3300028380 Bacteria 46763
154 Ga0268265_10328880 3300028380 Bacteria 1387
155 Ga0268264_10000306 3300028381 Bacteria 78744
156 Ga0265326_10006378 3300028558 Bacteria 3673
157 Ga0265327_10000200 3300031251 Bacteria 125094
158 Ga0307408_100000411 3300031548 Bacteria 38447
159 Ga0316575_10001671 3300031665 Bacteria 7255
160 Ga0316579_10000074 3300031691 Bacteria 25074
161 Ga0316579_10001869 3300031691 Bacteria 7807
162 Ga0316579_10003584 3300031691 Bacteria 6088
163 Ga0316579_10040317 3300031691 Bacteria 2165
164 Ga0316579_10059030 3300031691 Bacteria 1803
165 Ga0316576_10000087 3300031727 Bacteria 32443
166 Ga0316576_10011865 3300031727 Bacteria 5732
167 Ga0316576_10016142 3300031727 Bacteria 5035
168 Ga0316576_10025135 3300031727 Bacteria 4166
169 Ga0316576_10039469 3300031727 Bacteria 3389
170 Ga0316576_10104542 3300031727 Bacteria 2119
171 Ga0316576_10111286 3300031727 Bacteria 2052
172 Ga0316576_10177171 3300031727 Bacteria 1608
173 Ga0316578_10005148 3300031728 Bacteria 6299
174 Ga0316578_10014985 3300031728 Bacteria 4157
175 Ga0316578_10032085 3300031728 Bacteria 2997
176 Ga0316578_10039250 3300031728 Bacteria 2734
177 Ga0316577_10005347 3300031733 Bacteria 6727
178 Ga0316577_10006097 3300031733 Bacteria 6356
179 Ga0316577_10009713 3300031733 Bacteria 5179
180 Ga0316577_10036111 3300031733 Bacteria 2763
181 Ga0316583_10006097 3300032133 Bacteria 4336
182 Ga0316585_10002613 3300032137 Bacteria 4877
183 Ga0316585_10003921 3300032137 Bacteria 4117
184 Ga0316580_10000107 3300032139 Bacteria 15287
185 Ga0316580_10029455 3300032139 Bacteria 1698
186 Ga0316593_10001211 3300032168 Bacteria 5546
187 Ga0316593_10001350 3300032168 Bacteria 5358
188 Ga0316593_10002714 3300032168 Bacteria 4263
189 Ga0316593_10003443 3300032168 Bacteria 3926
190 Ga0316593_10007946 3300032168 Bacteria 2937
191 Ga0316593_10026960 3300032168 Bacteria 1840
192 Ga0316593_10038872 3300032168 Bacteria 1577
193 Ga0316592_1000034 3300033524 Bacteria 10807
194 Ga0316592_1008121 3300033524 Bacteria 2064
195 Ga0316592_1012926 3300033524 Bacteria 1716
196 Ga0316592_1012950 3300033524 Bacteria 1714
197 Ga0316586_1000087 3300033527 Bacteria 6641
198 Ga0316586_1006605 3300033527 Bacteria 1668
199 Ga0316588_1000842 3300033528 Bacteria 4629
200 Ga0316588_1010270 3300033528 Bacteria 1969
201 Ga0316588_1028700 3300033528 Bacteria 1298
202 Ga0316587_1000274 3300033529 Bacteria 4713
203 Ga0316596_1001239 3300033541 Bacteria 5046
204 Ga0316596_1001404 3300033541 Bacteria 4841
205 Ga0316596_1001575 3300033541 Bacteria 4656
206 Ga0316596_1003897 3300033541 Bacteria 3306
207 Ga0316596_1004314 3300033541 Bacteria 3182
208 Ga0316596_1008759 3300033541 Bacteria 2418
209 Ga0316596_1022963 3300033541 Bacteria 1596
210 Ga0373934_0001624 3300035086 Bacteria 8246
211 Ga0373954_0000812 3300035118 Bacteria 12090
212 Ga0373956_0000035 3300035119 Bacteria 43792
213 Ga0373957_0000803 3300035120 Bacteria 8165
214 Ga0373955_0027518 3300035172 Bacteria 2940
215 Ga0316574_0007008 3300035398 Bacteria 6142
216 Ga0316574_0018745 3300035398 Bacteria 4072
217 Ga0316574_0056359 3300035398 Bacteria 2458
218 Ga0316574_0101512 3300035398 Bacteria 1841
219 Ga0316574_0166870 3300035398 Bacteria 1418
220 Ga0373933_0009224 3300035724 Bacteria 5387
221 Ga0373937_0000233 3300036401 Bacteria 54240
222 Ga0316582_0008519 3300036647 Bacteria 5519
223 Ga0316582_0012961 3300036647 Bacteria 4675
224 Ga0316582_0016932 3300036647 Bacteria 4204
225 Ga0316582_0021751 3300036647 Bacteria 3796
226 Ga0316582_0067444 3300036647 Bacteria 2308
227 Ga0316582_0121934 3300036647 Bacteria 1745
228 Ga0316582_0126646 3300036647 Bacteria 1713
229 Ga0316584_0000524 3300036712 Bacteria 20424
230 Ga0316584_0002549 3300036712 Bacteria 11564
231 Ga0316584_0014549 3300036712 Bacteria 5604
232 Ga0316584_0023060 3300036712 Bacteria 4545
233 Ga0316584_0051350 3300036712 Bacteria 3083
234 Ga0316584_0089445 3300036712 Bacteria 2305
235 Ga0395899_0039549 3300037312 Bacteria 3530
236 Ga0395900_0017957 3300037418 Bacteria 7221
237 Ga0395905_0051782 3300037471 Bacteria 3845
238 Ga0395901_0002361 3300038443 Bacteria 19197
239 Ga0400490_12170 3300038726 Bacteria 70825
240 Ga0400490_52669 3300038726 Bacteria 57174
241 Ga0400491_03802 3300038727 Bacteria 9394
242 Ga0400485_08697 3300038735 Bacteria 4483
243 Ga0400483_035326 3300039062 Bacteria 2128
244 Ga0436361_0089627 3300039447 Bacteria 7998
245 Ga0436361_0768698 3300039447 Bacteria 1904
246 Ga0466972_0011576 3300044658 Bacteria 4429
247 Ga0453683_0052102 3300044673 Bacteria 2563
248 Ga0466961_0011909 3300044693 Bacteria 5559
249 Ga0466964_0042709 3300044706 Bacteria 1837
250 Ga0453684_0783178 3300044712 Bacteria 1030
251 Ga0466960_0024428 3300044901 Bacteria 2726
252 Ga0466959_0037417 3300045049 Bacteria 3585
253 Ga0451576_0000386 3300045051 Bacteria 102813
254 Ga0451576_0138371 3300045051 Bacteria 2540
255 Ga0466967_0085810 3300045976 Bacteria 2851
256 Ga0495592_0066541 3300046454 Bacteria 2636
257 Ga0495651_0000178 3300046462 Bacteria 47161
258 Ga0495628_0001910 3300046516 Bacteria 18904
259 Ga0495652_0005856 3300046529 Bacteria 11508
260 Ga0495597_0000110 3300046542 Bacteria 72678
261 Ga0495645_0004911 3300046543 Bacteria 9148
262 Ga0495657_0017971 3300046675 Bacteria 5127
263 Ga0495599_0000384 3300046678 Bacteria 25474
264 Ga0496124_0016702 3300048927 Bacteria 6963
265 Ga0496125_0001421 3300048928 Bacteria 34916
266 Ga0496125_0003647 3300048928 Bacteria 18422
267 Ga0496125_0016372 3300048928 Bacteria 7125
268 Ga0496125_0118349 3300048928 Bacteria 1897
269 Ga0496126_0029167 3300048929 Bacteria 5244
270 Ga0501031_0225024 3300049568 Bacteria 1221
271 Ga0501209_000386 3300049656 Bacteria 5385
272 Ga0501035_0050402 3300049822 Bacteria 3731
273 Ga0495601_0028753 3300053077 Bacteria 3445
274 Ga0500650_0000031 3300053098 Bacteria 54318
275 Ga0500595_012408 3300053119 Bacteria 3298
276 Ga0500618_002326 3300053125 Bacteria 7290
277 Ga0587084_000481 3300059477 Bacteria 3174
278 Ga0587082_002643 3300059504 Bacteria 2054
279 Ga0587088_003197 3300059508 Bacteria 1958
280 Ga0587091_001233 3300059511 Bacteria 2693
281 Ga0587067_000140 3300059640 Bacteria 4939
282 Ga0587072_000278 3300059643 Bacteria 4764
283 Ga0587076_000199 3300059645 Bacteria 4168
284 2511252106 2511231003 Bacteria 5606035
285 2511383729 2511231026 Bacteria 5225445
286 2521559234 2521172590 Bacteria 5047645
287 2550693822 2548876994 Bacteria 4904866
288 2553004043 2551306416 Bacteria 6152985
289 2597032740 2596583598 Bacteria 5251611
290 2599443949 2599185178 Bacteria 5365746
291 2649120920 2648501241 Bacteria 5312320
292 2652975443 2651869818 Bacteria 5864031
293 2722882252 2721755523 Bacteria 6430384
294 2738715594 2738541276 Bacteria 4690596
295 2765568597 2765235838 Bacteria 5445269
296 2808981319 2808606386 Bacteria 4471946
297 2809128905 2808606415 Bacteria 4576710
298 2809148526 2808606419 Bacteria 4576925
299 2819595099 2818991445 Bacteria 4955017
300 2819615740 2818991449 Bacteria 5518009
301 2839096522 2839094727 Bacteria 5534556
302 2839140005 2839138175 Bacteria 6549354
303 2846037963 2846033681 Bacteria 4377894
304 2846040330 2846037992 Bacteria 4526407
305 2852621059 2852618963 Bacteria 4577824
306 2884815776 2884811622 Bacteria 5552861
307 2884836802 2884836552 Bacteria 5219991
308 2884853093 2884852848 Bacteria 5221161
309 2896155789 2896154374 Bacteria 5221518
310 2900578347 2900577576 Bacteria 5438534
311 2900578760 2900577576 Bacteria 5438534
312 2904443601 2904439833 Bacteria 5931679
313 2904481015 2904479285 Bacteria 5073931
314 2904532527 2904530477 Bacteria 5876334
315 2904584996 2904584206 Bacteria 6028872
316 2904593345 2904589729 Bacteria 6113573
317 2904605539 2904601388 Bacteria 5884906
318 2919048161 2919046199 Bacteria 5567169
319 2919081312 2919079590 Bacteria 5946433
320 2923512914 2923510766 Bacteria 5926163
321 2928062230 2928058823 Bacteria 5520022
322 2928133761 2928130867 Bacteria 5467269
323 2932423732 2932422444 Bacteria 4678430
324 2998346674 2998344455 Bacteria 4222996
325 Ga0070670_100000454
326 JGI24741J21665_1000278
327 JGI24740J21852_10006377
328 JGI25156J39149_1003878
329 JGI25154J39366_1000130
330 JGI25157J39369_1000206
331 rootH1_10026054
332 Ga0006560J51390_1021601
333 Ga0006562J51391_1024019
334 Ga0055538_1000054
335 Ga0055539_1000066
336 Ga0055539_1000095
337 Ga0055533_1000076
338 Ga0055533_1001900
339 Ga0055532_1000058
340 Ga0055532_1000097
341 Ga0055525_1000098
342 Ga0055525_1000334
343 Ga0055527_1001152
344 Ga0055535_1000041
345 Ga0055542_1000834
346 Ga0055542_1001575
347 Ga0055529_1000077
348 Ga0055541_1000056
349 Ga0065704_10087020
350 Ga0070670_100148030
351 Ga0070666_10090840
352 Ga0070661_100000085
353 Ga0070669_100003624
354 Ga0070671_100000026
355 Ga0070688_100000735
356 Ga0070659_100009969
357 Ga0070667_100000676
358 Ga0070663_100000028
359 Ga0070681_10147399
360 Ga0070685_10000044
361 Ga0070665_100025335
362 Ga0068855_100014819
363 Ga0068855_100016531
364 Ga0068855_100300998
365 Ga0070664_100000020
366 Ga0068857_100008701
367 Ga0068854_100000192
368 Ga0068856_100000802
369 Ga0068856_100031035
370 Ga0068852_100079340
371 Ga0068859_100012930
372 Ga0068864_100000520
373 Ga0068858_100041250
374 Ga0068858_100056123
375 Ga0068860_100000910
376 Ga0068862_100002045
377 Ga0068862_100366197
378 Ga0097620_100012929
379 Ga0079104_1000002
380 Ga0099794_10012894
381 Ga0099794_10105896
382 Ga0099795_10010157
383 Ga0105250_10001110
384 Ga0105240_10019329
385 Ga0105240_10024497
386 Ga0105247_10019482
387 Ga0105243_10002783
388 Ga0105241_10203329
389 Ga0105248_10179439
390 Ga0105248_10270804
391 Ga0105237_10034390
392 Ga0105238_10001204
393 Ga0105238_10026269
394 Ga0105239_10009281
395 Ga0157373_10007796
396 Ga0157371_10000082
397 Ga0157370_10000089
398 Ga0157369_10031076
399 Ga0163162_10064098
400 Ga0157372_10000122
401 Ga0163163_10000342
402 Ga0182008_10008592
403 Ga0182006_1003804
404 Ga0206356_11765033
405 Ga0206349_1142056
406 Ga0206355_1417348
407 Ga0206351_10877176
408 Ga0206350_11470775
409 Ga0154015_1191932
410 Ga0213872_10002904
411 Ga0213872_10019315
412 Ga0224712_10083290
413 Ga0209435_100040
414 Ga0209435_100387
415 Ga0209784_100002
416 Ga0209784_100055
417 Ga0209784_100258
418 Ga0209566_100002
419 Ga0209566_100003
420 Ga0209566_100966
421 Ga0209566_100984
422 Ga0209674_100004
423 Ga0209674_100090
424 Ga0209674_100264
425 Ga0209672_100122
426 Ga0209147_100002
427 Ga0209147_100141
428 Ga0209563_100006
429 Ga0209563_100095
430 Ga0209563_102263
431 Ga0209437_100229
432 Ga0209258_100002
433 Ga0209258_100346
434 Ga0209646_1000019
435 Ga0209646_1000218
436 Ga0209026_1000534
437 Ga0209026_1003442
438 Ga0209677_100003
439 Ga0209677_100208
440 Ga0209148_1000118
441 Ga0209148_1002036
442 Ga0209759_1002058
443 Ga0209759_1008936
444 Ga0209455_1000009
445 Ga0207710_10003154
446 Ga0207680_10053163
447 Ga0207695_10001497
448 Ga0207695_10015511
449 Ga0207695_10023563
450 Ga0207649_10000290
451 Ga0207681_10002737
452 Ga0207694_10000532
453 Ga0207650_10000081
454 Ga0207644_10000065
455 Ga0207690_10005613
456 Ga0207709_10000015
457 Ga0207704_10062796
458 Ga0207711_10000326
459 Ga0207711_10001744
460 Ga0207679_10000028
461 Ga0207667_10000334
462 Ga0207640_10000078
463 Ga0207658_10000051
464 Ga0207703_10036956
465 Ga0207703_10241835
466 Ga0207678_10000787
467 Ga0207702_10000149
468 Ga0207702_10038626
469 Ga0207641_10007124
470 Ga0207641_10014345
471 Ga0207676_10000053
472 Ga0207674_10009496
473 Ga0209281_1000007
474 Ga0209588_1006411
475 Ga0268266_10005337
476 Ga0268266_10268479
477 Ga0268265_10000390
478 Ga0268265_10328880
479 Ga0268264_10000306
480 Ga0265326_10006378
481 Ga0265327_10000200
482 Ga0307408_100000411
483 Ga0316575_10001671
484 Ga0316579_10000074
485 Ga0316579_10001869
486 Ga0316579_10003584
487 Ga0316579_10040317
488 Ga0316579_10059030
489 Ga0316576_10000087
490 Ga0316576_10011865
491 Ga0316576_10016142
492 Ga0316576_10025135
493 Ga0316576_10039469
494 Ga0316576_10104542
495 Ga0316576_10111286
496 Ga0316576_10177171
497 Ga0316578_10005148
498 Ga0316578_10014985
499 Ga0316578_10032085
500 Ga0316578_10039250
501 Ga0316577_10005347
502 Ga0316577_10006097
503 Ga0316577_10009713
504 Ga0316577_10036111
505 Ga0316583_10006097
506 Ga0316585_10002613
507 Ga0316585_10003921
508 Ga0316580_10000107
509 Ga0316580_10029455
510 Ga0316593_10001211
511 Ga0316593_10001350
512 Ga0316593_10002714
513 Ga0316593_10003443
514 Ga0316593_10007946
515 Ga0316593_10026960
516 Ga0316593_10038872
517 Ga0316592_1000034
518 Ga0316592_1008121
519 Ga0316592_1012926
520 Ga0316592_1012950
521 Ga0316586_1000087
522 Ga0316586_1006605
523 Ga0316588_1000842
524 Ga0316588_1010270
525 Ga0316588_1028700
526 Ga0316587_1000274
527 Ga0316596_1001239
528 Ga0316596_1001404
529 Ga0316596_1001575
530 Ga0316596_1003897
531 Ga0316596_1004314
532 Ga0316596_1008759
533 Ga0316596_1022963
534 Ga0373934_0001624
535 Ga0373954_0000812
536 Ga0373956_0000035
537 Ga0373957_0000803
538 Ga0373955_0027518
539 Ga0316574_0007008
540 Ga0316574_0018745
541 Ga0316574_0056359
542 Ga0316574_0101512
543 Ga0316574_0166870
544 Ga0373933_0009224
545 Ga0373937_0000233
546 Ga0316582_0008519
547 Ga0316582_0012961
548 Ga0316582_0016932
549 Ga0316582_0021751
550 Ga0316582_0067444
551 Ga0316582_0121934
552 Ga0316582_0126646
553 Ga0316584_0000524
554 Ga0316584_0002549
555 Ga0316584_0014549
556 Ga0316584_0023060
557 Ga0316584_0051350
558 Ga0316584_0089445
559 Ga0395899_0039549
560 Ga0395900_0017957
561 Ga0395905_0051782
562 Ga0395901_0002361
563 Ga0400490_12170
564 Ga0400490_52669
565 Ga0400491_03802
566 Ga0400485_08697
567 Ga0400483_035326
568 Ga0436361_0089627
569 Ga0436361_0768698
570 Ga0466972_0011576
571 Ga0453683_0052102
572 Ga0466961_0011909
573 Ga0466964_0042709
574 Ga0453684_0783178
575 Ga0466960_0024428
576 Ga0466959_0037417
577 Ga0451576_0000386
578 Ga0451576_0138371
579 Ga0466967_0085810
580 Ga0495592_0066541
581 Ga0495651_0000178
582 Ga0495628_0001910
583 Ga0495652_0005856
584 Ga0495597_0000110
585 Ga0495645_0004911
586 Ga0495657_0017971
587 Ga0495599_0000384
588 Ga0496124_0016702
589 Ga0496125_0001421
590 Ga0496125_0003647
591 Ga0496125_0016372
592 Ga0496125_0118349
593 Ga0496126_0029167
594 Ga0501031_0225024
595 Ga0501209_000386
596 Ga0501035_0050402
597 Ga0495601_0028753
598 Ga0500650_0000031
599 Ga0500595_012408
600 Ga0500618_002326
601 Ga0587084_000481
602 Ga0587082_002643
603 Ga0587088_003197
604 Ga0587091_001233
605 Ga0587067_000140
606 Ga0587072_000278
607 Ga0587076_000199
608 2511252106
609 2511383729
610 2521559234
611 2550693822
612 2553004043
613 2597032740
614 2599443949
615 2649120920
616 2652975443
617 2722882252
618 2738715594
619 2765568597
620 2808981319
621 2809128905
622 2809148526
623 2819595099
624 2819615740
625 2839096522
626 2839140005
627 2846037963
628 2846040330
629 2852621059
630 2884815776
631 2884836802
632 2884853093
633 2896155789
634 2900578347
635 2900578760
636 2904443601
637 2904481015
638 2904532527
639 2904584996
640 2904593345
641 2904605539
642 2919048161
643 2919081312
644 2923512914
645 2928062230
646 2928133761
647 2932423732
648 2998346674

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF02774

Semialdhyde_dhC

Semialdehyde dehydrogenase, dimerisation domain

171

379

0.94

PF01118

Semialdhyde_dh

Semialdehyde dehydrogenase, NAD binding domain

31

149

0.85

Structural Annotation

Top 5 Hits

ID Description Score Start End
3pzr-assembly1.cif.gz_A crystals structure of aspartate beta-semialdehyde dehydrogenase from vibrio cholerae with nadp and product of s-carbamoyl-l-cysteine 0.9825 1 366
1pqu-assembly2.cif.gz_B crystal structure of the h277n mutant of aspartate semialdehyde dehydrogenase from haemophilus influenzae bound with nadp, s-methyl cysteine sulfoxide and cacodylate 0.9822 2 365
7skb-assembly2.cif.gz_C crystal structure of aspartate-semialdehyde dehydrogenase from acinetobacter baumannii 0.9818 1 366
1gl3-assembly1.cif.gz_B aspartate beta-semialdehyde dehydrogenase in complex with nadp and substrate analogue s-methyl cysteine sulfoxide 0.9808 2 362
1t4d-assembly2.cif.gz_C-2 crystal structure of escherichia coli aspartate beta-semialdehyde dehydrogenase (ecasadh), at 1.95 angstrom resolution 0.9797 2 362
ID Description Score Start End Superfamily
af_P0A9Q9_3_137_3.40.50.720 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;NAD(P)-binding Rossmann-like Domain 0.9853 3 135 3.40.50.720
1nx6A01 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;NAD(P)-binding Rossmann-like Domain 0.9836 2 133 3.40.50.720
af_P0A9Q9_5_251_3.90.180.10 Alpha Beta;Alpha-Beta Complex;Quinone Oxidoreductase; Chain A, domain 1;Medium-chain alcohol dehydrogenases, catalytic domain 0.981 4 248 3.90.180.10
1ozaA02 Alpha Beta;2-Layer Sandwich;Dihydrodipicolinate Reductase; domain 2;Dihydrodipicolinate Reductase; domain 2 0.9744 134 347 3.30.360.10
af_P0A9Q9_5_251_3.90.180.10 Alpha Beta;Alpha-Beta Complex;Quinone Oxidoreductase; Chain A, domain 1;Medium-chain alcohol dehydrogenases, catalytic domain 0.9693 4 248 3.90.180.10
ID Description Score Start End GO Terms
AF-A0A378F4N1-F1-model_v4 Putative aspartate-semialdehyde dehydrogenase (EC 1.2.1.11) 1.001 66 130 GO:0004073
GO:0051287
AF-A0A353NG78-F1-model_v4 Aspartate-semialdehyde dehydrogenase (EC 1.2.1.11) 0.9934 275 353 GO:0004073
GO:0008652
GO:0046983
AF-A0A7Y8B9Z8-F1-model_v4 deleted 0.9911 2 140
AF-A0A660NGG2-F1-model_v4 Aspartate-semialdehyde dehydrogenase (EC 1.2.1.11) 0.991 2 121 GO:0004073
GO:0051287
AF-A0A5N7ZSV6-F1-model_v4 Aspartate-semialdehyde dehydrogenase (EC 1.2.1.11) 0.9903 2 161 GO:0004073
GO:0051287

Map