F408574

General Info

Members Datasets Scaffolds Average Seq Length
326 262 652 911

Family's Representative Sequence

Representative Sequence iso_pu_bacteria|2643221631|2644178833
Length 917
Sequence DKILRAGEGKTLRKLQRIAAQVNSIEEDFVNLTDDELRALTDEYKQRLADGETLDDILPEAFATVREAAKRVLGQRHYDVQLMGGAALHLGFVAEMRTGEGKTLVGTLPAYLNALTGKGVHLITVNDYLAERDSEWMGRVHRFLGLEVGVILGSMSPAERKRQYAMDITYGTNNEFGFDYLRDNMAWSQDELVQRGHNFAVVDEVDSILIDEARTPLIISGPADQATKWYADFAKLVQRLKRDRDYEVDEKKRTVGVLEEGVGRVEDYLGIDNLYESVNTPLVGFLNNAIKAKELYKNDKDYVVMNGEVMIVDEHTGRMLAGRRYNEGMHQAIEAKEGVEVQNENQTLATVTLQNFFRLYDKLGGMTGTATTEAAEFHQIYKLGVVPIPTNKNPLRIDQPDLIYKSEPAKFAAVVEDIVEKHEKGQPILVGTVSVEKSEYLSQELRKRGVPHEVLNAKHHEREAQIVAQAGRKGAVTVATNMAGRGTDIMLGGNADHLAAAELAQRGLTELDTPDEYEAAFPAALEKAKAAVKAEQEEVQSIGGLYVLGTERHESRRIDNQLRGRSGRQGDPGESRFYLSLGDDLMRLFKAGMVERVLAMANVPEDVPIESKMVTRAIASAQTQVEQQNFEIRKNVLKYDEVLNRQREVIYGERRRVLEGEDLQEQVGHFMDDTVAAYVGAATGEGFEDDWDLDKLWTALKQLYPLTLELEELEEEAGGPAGLTSEFLTKVLQEDIQAQYGAREDQLGSEIMRELERRVVLSVLDRRWREHLYEMDYLQEGIGLRAMAQRDPLVEYQREGFDMFGAMMEGIKEESVGYLFNLEVQVEQQVEEVPLADTEETLARLEKDAAASRPEIKAKGLEVPKPQRLHYTAPSVDGDETVVEGDFEDTLGAEEGDGLTRAERRKAARAAKGRRRK

Samples

Sample ID Description Type Environment
1 3300002772 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mMS Metagenome Endosphere
2 3300003214 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mCL Metagenome Endosphere
3 3300003285 Grassland soil microbial communities from Hopland, California, USA - Sample H3_Rhizo_39 (Metagenome Metatranscriptome, Counting Only) Metatranscriptome Rhizosphere
4 3300003752 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mCL_r2 Metagenome Endosphere
5 3300003756 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mMS_r2 Metagenome Endosphere
6 3300003759 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mMF_r2 Metagenome Endosphere
7 3300003760 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mMS_r2 Metagenome Endosphere
8 3300003762 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mMF_r2 Metagenome Endosphere
9 3300003763 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mCL_r2 Metagenome Endosphere
10 3300003841 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mTSA_r2 Metagenome Endosphere
11 3300005327 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG Metagenome Rhizosphere
12 3300005366 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG Metagenome Rhizosphere
13 3300005616 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 Metagenome Rhizosphere
14 3300005719 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 Metagenome Rhizosphere
15 3300005834 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C1-2 Metagenome Rhizosphere
16 3300005985 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
17 3300006038 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 Metagenome Endosphere
18 3300006048 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-3 Metagenome Endosphere
19 3300006178 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 Metagenome Endosphere
20 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
21 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
22 3300013102 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG Metagenome Rhizosphere
23 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
24 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
25 3300020081 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-3 (Metagenome Metatranscriptome) (v2) (version 2) Metatranscriptome Rhizosphere
26 3300020082 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-4 (Metagenome Metatranscriptome) (v2) (version 2) Metatranscriptome Rhizosphere
27 3300021388 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 Metagenome Unclassified
28 3300025225 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mTSA_r2 (SPAdes) (version 2) Metagenome Endosphere
29 3300025226 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mMS_r2 (SPAdes) (version 2) Metagenome Endosphere
30 3300025228 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mMS_r2 (SPAdes) (version 2) Metagenome Endosphere
31 3300025229 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mLB_r2 (SPAdes) (version 2) Metagenome Endosphere
32 3300025230 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mMF_r2 (SPAdes) (version 2) Metagenome Endosphere
33 3300025231 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mMS (SPAdes) (version 2) Metagenome Endosphere
34 3300025233 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mTSA (SPAdes) (version 2) Metagenome Endosphere
35 3300025253 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
36 3300025254 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mMF_r2 (SPAdes) (version 2) Metagenome Endosphere
37 3300025261 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mCL (SPAdes) (version 2) Metagenome Endosphere
38 3300025272 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
39 3300025297 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF (SPAdes) (version 2) Metagenome Endosphere
40 3300025321 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C1-2 (SPAdes) (version 2) Metagenome Rhizosphere
41 3300025728 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
42 3300025904 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2 (SPAdes) (version 2) Metagenome Rhizosphere
43 3300025909 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
44 3300025914 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
45 3300025924 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
46 3300026142 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes) (version 2) Metagenome Rhizosphere
47 3300027907 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes) (version 3) Metagenome Rhizosphere
48 3300028786 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 23_EM Metagenome Unclassified
49 3300028794 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM Metagenome Unclassified
50 3300030522 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 14_EM Metagenome Unclassified
51 3300031456 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 15_EM Metagenome Unclassified
52 3300031548 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3 Metagenome Rhizosphere
53 3300031616 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 9_EM Metagenome Unclassified
54 3300031649 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 16_EM Metagenome Unclassified
55 3300031731 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-1 Metagenome Rhizosphere
56 3300031901 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2 Metagenome Rhizosphere
57 3300031995 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2 Metagenome Rhizosphere
58 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
59 3300032004 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3 Metagenome Rhizosphere
60 3300033179 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 7_EM Metagenome Unclassified
61 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
62 3300037853 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 v2 Metagenome Unclassified
63 3300038735 Seagrass microbial communities from Seahorse Key, FL, USA - SH0319 Metagenome Unclassified
64 3300038742 Seagrass microbial communities from Seahorse Key, FL, USA - SH0818 Metagenome Unclassified
65 3300042002 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0612DE14Z082817_5616 Metagenome Rhizosphere
66 3300042007 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0612DE14Z070717_5290 Metagenome Rhizosphere
67 3300042014 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0216WE14Z070717_5275 Metagenome Rhizosphere
68 3300042146 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0714D_E14_080116_2979 Metagenome Rhizosphere
69 3300042435 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0503WE14Z082817_5613 Metagenome Rhizosphere
70 3300042531 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - SB0117D_E14_082716_2253 Metagenome Rhizosphere
71 3300044765 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA2R Metagenome Rhizosphere
72 3300044842 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA2R Metagenome Rhizosphere
73 3300044901 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA4R Metagenome Rhizosphere
74 3300045049 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC3R Metagenome Rhizosphere
75 3300046454 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-198-CL2_38_5 rhizosphere Metagenome Rhizosphere
76 3300046457 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-133-Co2_50_25 rhizosphere Metagenome Rhizosphere
77 3300046459 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL3_88_32 rhizosphere Metagenome Rhizosphere
78 3300046462 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-86-CL2_69_17 rhizosphere Metagenome Rhizosphere
79 3300046477 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL1_23_5 rhizosphere Metagenome Rhizosphere
80 3300046492 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co3_21_57 rhizosphere Metagenome Rhizosphere
81 3300046500 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co1_23_3 rhizosphere Metagenome Rhizosphere
82 3300046507 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co2_62_14 rhizosphere Metagenome Rhizosphere
83 3300046513 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-351-Co2_42_17 rhizosphere Metagenome Rhizosphere
84 3300046516 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL1_35_3 rhizosphere Metagenome Rhizosphere
85 3300046518 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co1_22_4 rhizosphere Metagenome Rhizosphere
86 3300046522 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 rhizosphere Metagenome Rhizosphere
87 3300046530 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-866-Co1_10_5 rhizosphere Metagenome Rhizosphere
88 3300046536 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL2_62_7 rhizosphere Metagenome Rhizosphere
89 3300046538 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co1_12_7 rhizosphere Metagenome Rhizosphere
90 3300046543 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL1_28_5 rhizosphere Metagenome Rhizosphere
91 3300046642 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL2_42_16 rhizosphere Metagenome Rhizosphere
92 3300046660 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co1_32_7 rhizosphere Metagenome Rhizosphere
93 3300046663 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL3_77_6 rhizosphere Metagenome Rhizosphere
94 3300046680 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL2_38_7 rhizosphere Metagenome Rhizosphere
95 3300046689 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL2_54_28 rhizosphere Metagenome Rhizosphere
96 3300046690 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL3_88_3 rhizosphere Metagenome Rhizosphere
97 3300046692 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co1_37_5 rhizosphere Metagenome Rhizosphere
98 3300046809 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-258-CL2_67_23 rhizosphere Metagenome Rhizosphere
99 3300047319 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL1_34_16 rhizosphere Metagenome Rhizosphere
100 3300047321 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL3_98_5 rhizosphere Metagenome Rhizosphere
101 3300047470 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWA-24-3-Co1_3_5 rhizosphere Metagenome Rhizosphere
102 3300047673 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-198-CL3_81_33 rhizosphere Metagenome Rhizosphere
103 3300048089 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL3_84_27 rhizosphere Metagenome Rhizosphere
104 3300048906 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1d N15 Metagenome Rhizoplane
105 3300048908 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2d N15 Metagenome Rhizoplane
106 3300048914 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4d N15 Metagenome Rhizoplane
107 3300048916 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5d N15 Metagenome Rhizoplane
108 3300048917 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6c N15 Metagenome Rhizoplane
109 3300048918 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6d N15 Metagenome Rhizoplane
110 3300048920 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1e N15 Metagenome Unclassified
111 3300048921 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1f N15 Metagenome Unclassified
112 3300048922 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2e N15 Metagenome Unclassified
113 3300048924 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_3e N15 Metagenome Unclassified
114 3300048925 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8x unlabeled Metagenome Unclassified
115 3300048926 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8y unlabeled Metagenome Unclassified
116 3300048927 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_4e N15 Metagenome Unclassified
117 3300048928 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_5e N15 Metagenome Unclassified
118 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
119 3300049568 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_01 Metagenome Rhizosphere
120 3300049570 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_03 Metagenome Rhizosphere
121 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
122 3300049572 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 Metagenome Rhizosphere
123 3300049573 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_01 Metagenome Rhizosphere
124 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
125 3300049577 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_02 Metagenome Rhizosphere
126 3300049578 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_03 Metagenome Rhizosphere
127 3300049579 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 Metagenome Rhizosphere
128 3300049580 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_01 Metagenome Rhizosphere
129 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
130 3300049583 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_01 Metagenome Rhizosphere
131 3300049584 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_02 Metagenome Rhizosphere
132 3300049586 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 Metagenome Rhizosphere
133 3300049587 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_02 Metagenome Rhizosphere
134 3300049589 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_01 Metagenome Rhizosphere
135 3300049592 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_01 Metagenome Rhizosphere
136 3300049741 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_01 Metagenome Rhizosphere
137 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
138 3300049744 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_02 Metagenome Rhizosphere
139 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
140 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
141 3300050492 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 re-annotation Metagenome Endosphere
142 3300053080 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-905-CL1_32_20 endosphere Metagenome Endosphere
143 3300053083 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-866-Co2_58_19 rhizosphere Metagenome Rhizosphere
144 3300053087 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co3_14_51 endosphere Metagenome Endosphere
145 3300053104 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co2_41_23 endosphere Metagenome Endosphere
146 3300053117 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co2_62_25 endosphere Metagenome Endosphere
147 3300053136 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL2_62_7 endosphere Metagenome Endosphere
148 3300053139 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co1_23_3 endosphere Metagenome Endosphere
149 3300053140 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL1_33_12 endosphere Metagenome Endosphere
150 3300053153 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 endosphere Metagenome Endosphere
151 3300053730 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co2_68_28 endosphere Metagenome Endosphere
152 3300054114 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_03 Metagenome Rhizosphere
153 2643221631 Kitasatospora sp. Root107 Isolate Unclassified
154 2537561592 Arthrobacter crystallopoietes BAB-32 Isolate Rhizosphere
155 2554235227 Arthrobacter sp. PAO19 Isolate Rhizosphere
156 2582581312 Streptomyces atratus OK008 Isolate Rhizosphere
157 2582581314 Streptomyces mirabilis YR139 Isolate Rhizosphere
158 2585428094 Herbiconiux sp. YR403 Isolate Rhizosphere
159 2585428157 Microbacterium sp. CF335 Isolate Rhizosphere
160 2616644814 Streptomyces mirabilis OK461 Isolate Rhizosphere
161 2616644941 Streptomyces atratus OK807 Isolate Rhizosphere
162 2643221548 Streptomyces sp. Root55 Isolate Unclassified
163 2643221575 Microbacterium sp. Root61 Isolate Unclassified
164 2643221578 Streptomyces sp. Root63 Isolate Unclassified
165 2643221587 Streptomyces sp. Root66D1 Isolate Unclassified
166 2643221601 Kitasatospora sp. Root187 Isolate Unclassified
167 2643221613 Oerskovia sp. Root22 Isolate Unclassified
168 2643221616 Leifsonia sp. Root227 Isolate Unclassified
169 2643221632 Leifsonia sp. Root112D2 Isolate Unclassified
170 2643221649 Leifsonia sp. Root4 Isolate Unclassified
171 2643221670 Streptomyces sp. Root431 Isolate Unclassified
172 2643221673 Streptomyces sp. Root1295 Isolate Unclassified
173 2643221677 Streptomyces sp. Root1304 Isolate Unclassified
174 2643221682 Streptomyces sp. Root1319 Isolate Unclassified
175 2643221690 Cellulomonas sp. Root485 Isolate Unclassified
176 2643221694 Cellulomonas sp. Root137 Isolate Unclassified
177 2643221721 Oerskovia sp. Root918 Isolate Unclassified
178 2643221722 Cellulomonas sp. Root930 Isolate Unclassified
179 2654587600 Glutamicibacter halophytocola KLBMP5180 Isolate Unclassified
180 2728369276 Kineococcus rhizosphaerae DSM 19711 Isolate Rhizosphere
181 2739367653 Kocuria sp. OV113 Isolate Unclassified
182 2751185788 Curtobacterium pusillum AA3 Isolate Unclassified
183 2773857759 Microbacterium sp. 1294 Isolate Unclassified
184 2808606368 Microbacterium sp. SLBN-1 Isolate Unclassified
185 2808606447 Microbacterium sp. HAR-UPW-R2A-48 Isolate Unclassified
186 2808606700 Arthrobacter agilis UMCV2 Isolate Rhizosphere
187 2808606982 Streptomyces sp. SLBN-118 Isolate Unclassified
188 2811994880 Cellulomonas sp. SLBN-39 Isolate Unclassified
189 2816332305 Kocuria rhizophila FDAARGOS_302 Isolate Rhizosphere
190 2818991463 Streptomyces argenteolus 3259 Isolate Rhizosphere
191 2821268502 Microbacterium sp. YT0620BN Isolate Unclassified
192 2835188231 Isoptericola variabilis JZ7 Isolate Unclassified
193 2839986021 Cellulosimicrobium cellulans JZ5 Isolate Unclassified
194 2844841374 Leifsonia soli DSM 23871 Isolate Rhizosphere
195 2844852863 Herbiconiux flava DSM 26474 Isolate Rhizosphere
196 2848551377 Brachybacterium saurashtrense DSM 23186 Isolate Unclassified
197 2852632344 Microbacterium sp. AK009 Isolate Rhizosphere
198 2852643534 Leifsonia sp. AK011 Isolate Rhizosphere
199 2857710386 Brevibacterium sp. R-73093 Isolate Unclassified
200 2857727296 Kocuria sp. R-72562 Isolate Unclassified
201 2857729791 Plantibacter sp. R-72288 Isolate Unclassified
202 2857737099 Lysinimonas sp. R-73066 Isolate Unclassified
203 2862574272 Streptomyces sp. AcE210 Isolate Nodule
204 2867369537 Streptomyces sp. Z26 Isolate Unclassified
205 2867475112 Streptomyces sp. TM32 Isolate Unclassified
206 2870622029 Conyzicola lurida DSM 105784 Isolate Unclassified
207 2870628048 Microbacterium thalassium DSM 12511 Isolate Rhizosphere
208 2875391855 Streptomyces cavourensis 1AS2a Isolate Rhizosphere
209 2884994152 Cellulomonas sp. H30R-01 Isolate Rhizosphere
210 2887443736 Ruania rhizosphaerae LNNU 22110 Isolate Rhizosphere
211 2893684298 Kocuria palustris DSM 11925 Isolate Rhizosphere
212 2904430863 Curtobacterium oceanosedimentum 1519 Isolate Rhizosphere
213 2904501621 Curtobacterium sp. 1909 Isolate Unclassified
214 2905926851 Arthrobacter sedimenti MIC A30 Isolate Rhizosphere
215 2908674828 Curtobacterium sp. 1517 Isolate Rhizosphere
216 2909074476 Curtobacterium sp. 1310 Isolate Rhizosphere
217 2912757875 Streptomyces sp. S4.7 Isolate Rhizosphere
218 2919039151 Curtobacterium sp. 260 Isolate Rhizosphere
219 2919042368 Curtobacterium sp. 320 Isolate Rhizosphere
220 2919055335 Leifsonia sp. 1010 Isolate Rhizosphere
221 2919523602 Leifsonia shinshuensis 3821 Isolate Unclassified
222 2920879853 Kocuria salina CV6 Isolate Unclassified
223 2928104781 Curtobacterium sp. 1544 Isolate Rhizosphere
224 2928121344 Plantibacter flavus 1756 Isolate Rhizosphere
225 2928153084 Leifsonia sp. 563 Isolate Unclassified
226 2928500415 Curtobacterium oceanosedimentum 1257 Isolate Rhizosphere
227 2932431166 Cellulosimicrobium sp. 4261 Isolate Rhizosphere
228 2935890801 Oerskovia enterophila 3230 Isolate Rhizosphere
229 2939657138 Conyzicola nivalis 2857 Isolate Rhizosphere
230 2939660829 Mycetocola sp. 2940 Isolate Rhizosphere
231 2946003308 Arthrobacter agilis W3I6 Isolate Rhizosphere
232 2946033335 Microbacterium sp. W4I4 Isolate Rhizosphere
233 2946045630 Streptomyces sp. W4I9-2 Isolate Rhizosphere
234 2953998280 Pseudarthrobacter sp. W1I19 Isolate Rhizosphere
235 2954002825 Streptomyces turgidiscabies W2I16 Isolate Rhizosphere
236 2966598605 Kitasatospora papulosa SLBN-177 Isolate Rhizosphere
237 2966921586 Rathayibacter agropyri 617 Isolate Rhizosphere
238 2966924647 Frigoribacterium sp. 2355 Isolate Rhizosphere
239 2977251589 Microbacterium sp. SORGH_AS 505 Isolate Unclassified
240 2984551494 Curtobacterium sp. SORGH_AS776 Isolate Aerial Root
241 2984580707 Microbacterium paludicola SORGH_AS919 Isolate Aerial Root
242 2995726249 Leucobacter zeae CC-MF41 Isolate Rhizosphere
243 2997451912 Streptomyces piniterrae jys28 Isolate Rhizosphere
244 2997600082 Streptomyces coffeae CA1R205 Isolate Unclassified
245 3001889506 Janibacter sp. YIM B02568 Isolate Unclassified
246 3006321560 Actinacidiphila epipremni PRB2-1 Isolate Unclassified
247 3006393351 Streptomyces sp. SID4985 Isolate Unclassified
248 3006486233 Streptomyces sp. BR123 Isolate Rhizosphere
249 3006493962 Streptomyces grisecoloratus TRM S81-3 Isolate Rhizosphere
250 8002811521 Leucobacter chinensis NC76-1 Isolate Rhizosphere
251 8004021418 Arthrobacter sp. SDTb3-6 Isolate Rhizosphere
252 8004025490 Arthrobacter wenxiniae AETb3-4 Isolate Rhizosphere
253 8008485437 Streptomyces mimosae 3MP-10 Isolate Unclassified
254 8025524527 Streptomyces sp. 3MP-14 Isolate Unclassified
255 8048127548 Streptomyces samsunensis DSM 42010 Isolate Rhizosphere
256 8054160619 Streptomyces rhizoryzae RS10V-4 Isolate Rhizosphere
257 8055034563 Leucobacter allii H21R-40 Isolate Rhizosphere
258 8055037949 Leucobacter rhizosphaerae H25R-14 Isolate Rhizosphere
259 8056037122 Herbiconiux gentiana CPCC 205716 Isolate Rhizosphere
260 8056447290 Streptomyces huiliensis SCA2-4 Isolate Rhizosphere
261 8056667051 Streptomyces sichuanensis SCA3-4 Isolate Rhizosphere
262 8056829672 Streptomyces barringtoniae JA03 Isolate Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 65.34
Metatranscriptomes 0.92
Isolates 33.74

Biome Distribution

Category Percentage (%)
Aerial Root 0.61
Bulb 0
Endosphere 11.66
Nodule 0.31
Rhizoplane 1.84
Rhizosphere 58.9
Stem 0
Stem Tuber 0
Unclassified 0

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 JGI25164J39214_1000655 3300002772 Bacteria 14173
2 JGI25165J46597_1000044 3300003214 Bacteria 263289
3 Ga0007423J48922_100318 3300003285 Bacteria 5155
4 Ga0055539_1000027 3300003752 Bacteria 258020
5 Ga0055533_1000020 3300003756 Bacteria 353998
6 Ga0055525_1000151 3300003759 Bacteria 94158
7 Ga0055527_1000005 3300003760 Bacteria 504776
8 Ga0055542_1000006 3300003762 Bacteria 504776
9 Ga0055529_1000013 3300003763 Bacteria 373267
10 Ga0055541_1000849 3300003841 Bacteria 7476
11 Ga0070658_10000330 3300005327 Bacteria 40639
12 Ga0070658_10006072 3300005327 Bacteria 9795
13 Ga0070659_100014681 3300005366 Bacteria 5856
14 Ga0068852_100000700 3300005616 Bacteria 21917
15 Ga0068861_100032707 3300005719 Bacteria 3832
16 Ga0068851_10000001 3300005834 Bacteria 495512
17 Ga0081539_10018597 3300005985 Bacteria 4812
18 Ga0081539_10021092 3300005985 Bacteria 4369
19 Ga0075365_10008027 3300006038 Bacteria 5960
20 Ga0075363_100016944 3300006048 Bacteria 3606
21 Ga0075367_10001429 3300006178 Bacteria 10243
22 Ga0105237_10000738 3300009545 Bacteria 45118
23 Ga0105238_10003348 3300009551 Bacteria 15990
24 Ga0157371_10001174 3300013102 Bacteria 28121
25 Ga0157371_10037621 3300013102 Bacteria 3462
26 Ga0157370_10004526 3300013104 Bacteria 15930
27 Ga0157369_10000103 3300013105 Bacteria 118273
28 Ga0157369_10010472 3300013105 Bacteria 10561
29 Ga0206354_10250894 3300020081 Bacteria 4931
30 Ga0206353_10548987 3300020082 Bacteria 12280
31 Ga0213875_10007833 3300021388 Bacteria 5488
32 Ga0209566_100043 3300025225 Bacteria 266609
33 Ga0209674_100001 3300025226 Bacteria 4013750
34 Ga0209672_100003 3300025228 Bacteria 1560476
35 Ga0209147_100465 3300025229 Bacteria 24951
36 Ga0209563_100001 3300025230 Bacteria 4013775
37 Ga0209563_100241 3300025230 Bacteria 26299
38 Ga0207427_100077 3300025231 Bacteria 149591
39 Ga0209437_100490 3300025233 Bacteria 29074
40 Ga0209677_100001 3300025253 Bacteria 4013787
41 Ga0209148_1000004 3300025254 Bacteria 1844481
42 Ga0209233_1000014 3300025261 Bacteria 996641
43 Ga0209455_1000046 3300025272 Bacteria 382681
44 Ga0209758_1002554 3300025297 Bacteria 18334
45 Ga0207656_10000002 3300025321 Bacteria 792178
46 Ga0207655_1005052 3300025728 Bacteria 9121
47 Ga0207647_10017516 3300025904 Bacteria 4869
48 Ga0207705_10000001 3300025909 Bacteria 2061880
49 Ga0207671_10000002 3300025914 Bacteria 1144816
50 Ga0207694_10000022 3300025924 Bacteria 288900
51 Ga0207698_10000063 3300026142 Bacteria 72803
52 Ga0207698_10000323 3300026142 Bacteria 28504
53 Ga0207428_10001744 3300027907 Bacteria 22274
54 Ga0307517_10018760 3300028786 Bacteria 8923
55 Ga0307515_10053741 3300028794 Bacteria 5932
56 Ga0307512_10032302 3300030522 Bacteria 4521
57 Ga0307512_10033149 3300030522 Bacteria 4446
58 Ga0307513_10046212 3300031456 Bacteria 4750
59 Ga0307408_100003596 3300031548 Bacteria 10555
60 Ga0307508_10006968 3300031616 Bacteria 10541
61 Ga0307508_10008074 3300031616 Bacteria 9761
62 Ga0307514_10030407 3300031649 Bacteria 4335
63 Ga0307405_10013821 3300031731 Bacteria 4318
64 Ga0307406_10000712 3300031901 Bacteria 18735
65 Ga0307406_10002614 3300031901 Bacteria 9810
66 Ga0307409_100002762 3300031995 Bacteria 9278
67 Ga0307416_100005999 3300032002 Bacteria 7554
68 Ga0307416_100014323 3300032002 Bacteria 5429
69 Ga0307414_10005690 3300032004 Bacteria 6881
70 Ga0307507_10014493 3300033179 Bacteria 9390
71 Ga0395898_0025358 3300037466 Bacteria 5975
72 Ga0395898_0046860 3300037466 Bacteria 4245
73 Ga0436364_0077614 3300037853 Bacteria 12761
74 Ga0400485_08773 3300038735 Bacteria 119523
75 Ga0400486_27583 3300038742 Bacteria 18353
76 Ga0439442_000001 3300042002 Bacteria 161142
77 Ga0439449_0002837 3300042007 Bacteria 6738
78 Ga0439457_005436 3300042014 Bacteria 3208
79 Ga0450907_000136 3300042146 Bacteria 28005
80 Ga0439434_0001269 3300042435 Bacteria 7262
81 Ga0450918_000474 3300042531 Bacteria 8557
82 Ga0466970_0000056 3300044765 Bacteria 43205
83 Ga0466970_0009318 3300044765 Bacteria 4958
84 Ga0466957_0026314 3300044842 Bacteria 3451
85 Ga0466960_0013867 3300044901 Bacteria 3433
86 Ga0466959_0004019 3300045049 Bacteria 9774
87 Ga0495592_0024849 3300046454 Bacteria 4552
88 Ga0495590_0000336 3300046457 Bacteria 24394
89 Ga0495629_0005284 3300046459 Bacteria 9654
90 Ga0495629_0011798 3300046459 Bacteria 6340
91 Ga0495629_0012853 3300046459 Bacteria 6055
92 Ga0495651_0000755 3300046462 Bacteria 25003
93 Ga0495651_0010101 3300046462 Bacteria 7251
94 Ga0495651_0019403 3300046462 Bacteria 5270
95 Ga0495664_0000276 3300046477 Bacteria 24487
96 Ga0495585_0018469 3300046492 Bacteria 4020
97 Ga0495596_0012770 3300046500 Bacteria 3582
98 Ga0495606_0016274 3300046507 Bacteria 5678
99 Ga0495616_0014410 3300046513 Bacteria 4425
100 Ga0495628_0027486 3300046516 Bacteria 4628
101 Ga0495631_0002908 3300046518 Bacteria 9489
102 Ga0495643_0003252 3300046522 Bacteria 12022
103 Ga0495654_0016992 3300046530 Bacteria 3831
104 Ga0495587_0007540 3300046536 Bacteria 7045
105 Ga0495609_0015489 3300046538 Bacteria 3569
106 Ga0495645_0012402 3300046543 Bacteria 6007
107 Ga0495634_0000467 3300046642 Bacteria 40017
108 Ga0495634_0040715 3300046642 Bacteria 3157
109 Ga0495625_0006514 3300046660 Bacteria 10372
110 Ga0495635_0000788 3300046663 Bacteria 20646
111 Ga0495646_0000179 3300046680 Bacteria 31613
112 Ga0495613_0002960 3300046689 Bacteria 12713
113 Ga0495624_0028091 3300046690 Bacteria 3678
114 Ga0495671_0013696 3300046692 Bacteria 4382
115 Ga0495600_0009000 3300046809 Bacteria 6151
116 Ga0495600_0015333 3300046809 Bacteria 4843
117 Ga0495674_0033098 3300047319 Bacteria 4685
118 Ga0495676_0004086 3300047321 Bacteria 13294
119 Ga0495676_0052703 3300047321 Bacteria 3245
120 Ga0495681_0005252 3300047470 Bacteria 8697
121 Ga0495681_0010010 3300047470 Bacteria 5775
122 Ga0495593_0001357 3300047673 Bacteria 14297
123 Ga0495614_0000193 3300048089 Bacteria 23115
124 Ga0496103_0004003 3300048906 Bacteria 8949
125 Ga0496105_0039554 3300048908 Bacteria 3887
126 Ga0496111_0023212 3300048914 Bacteria 4354
127 Ga0496113_0033606 3300048916 Bacteria 3736
128 Ga0496114_0039165 3300048917 Bacteria 3921
129 Ga0496115_0002074 3300048918 Bacteria 14353
130 Ga0496117_0011562 3300048920 Bacteria 7897
131 Ga0496117_0014794 3300048920 Bacteria 6696
132 Ga0496117_0016000 3300048920 Bacteria 6354
133 Ga0496118_0000640 3300048921 Bacteria 57413
134 Ga0496118_0014550 3300048921 Bacteria 7356
135 Ga0496119_0002830 3300048922 Bacteria 18551
136 Ga0496119_0006102 3300048922 Bacteria 11287
137 Ga0496119_0008109 3300048922 Bacteria 9307
138 Ga0496119_0024042 3300048922 Bacteria 4300
139 Ga0496121_0000025 3300048924 Bacteria 453467
140 Ga0496122_0000020 3300048925 Bacteria 401675
141 Ga0496122_0000534 3300048925 Bacteria 78704
142 Ga0496122_0000877 3300048925 Bacteria 56353
143 Ga0496122_0001607 3300048925 Bacteria 35329
144 Ga0496123_0000003 3300048926 Bacteria 866556
145 Ga0496123_0000142 3300048926 Bacteria 146932
146 Ga0496123_0001128 3300048926 Bacteria 39884
147 Ga0496123_0009800 3300048926 Bacteria 8558
148 Ga0496124_0000070 3300048927 Bacteria 220875
149 Ga0496124_0000461 3300048927 Bacteria 70566
150 Ga0496124_0006489 3300048927 Bacteria 12734
151 Ga0496125_0000120 3300048928 Bacteria 175991
152 Ga0496125_0000214 3300048928 Bacteria 118625
153 Ga0496125_0001049 3300048928 Bacteria 42719
154 Ga0496125_0002055 3300048928 Bacteria 27192
155 Ga0496126_0005931 3300048929 Bacteria 13770
156 Ga0501031_0002835 3300049568 Bacteria 11064
157 Ga0501033_0019768 3300049570 Bacteria 5090
158 Ga0501034_0006138 3300049571 Bacteria 12954
159 Ga0501034_0009553 3300049571 Bacteria 10153
160 Ga0501034_0015998 3300049571 Bacteria 7701
161 Ga0501036_0007340 3300049572 Bacteria 8981
162 Ga0501036_0021744 3300049572 Bacteria 5392
163 Ga0501037_0003899 3300049573 Bacteria 10824
164 Ga0501037_0004961 3300049573 Bacteria 9676
165 Ga0501038_0004309 3300049574 Bacteria 13228
166 Ga0501038_0013010 3300049574 Bacteria 7589
167 Ga0501038_0038577 3300049574 Bacteria 4182
168 Ga0501038_0054457 3300049574 Bacteria 3441
169 Ga0501041_0010248 3300049577 Bacteria 5522
170 Ga0501042_0012152 3300049578 Bacteria 5825
171 Ga0501043_0053021 3300049579 Bacteria 3185
172 Ga0501046_0002804 3300049580 Bacteria 16232
173 Ga0501046_0022600 3300049580 Bacteria 5180
174 Ga0501047_0000254 3300049581 Bacteria 63304
175 Ga0501047_0000770 3300049581 Bacteria 33540
176 Ga0501047_0001034 3300049581 Bacteria 27873
177 Ga0501047_0010677 3300049581 Bacteria 8678
178 Ga0501047_0020789 3300049581 Bacteria 6305
179 Ga0501067_0012464 3300049583 Bacteria 4716
180 Ga0501068_0006421 3300049584 Bacteria 6481
181 Ga0501070_0000044 3300049586 Bacteria 108859
182 Ga0501071_0000109 3300049587 Bacteria 32090
183 Ga0501071_0000629 3300049587 Bacteria 18329
184 Ga0501073_0000048 3300049589 Bacteria 76634
185 Ga0501073_0005223 3300049589 Bacteria 9737
186 Ga0501076_0014334 3300049592 Bacteria 5969
187 Ga0501079_0008455 3300049741 Bacteria 7802
188 Ga0501080_0000038 3300049742 Bacteria 82193
189 Ga0501083_0004610 3300049744 Bacteria 9738
190 Ga0501083_0028916 3300049744 Bacteria 3817
191 Ga0501035_0003710 3300049822 Bacteria 14561
192 Ga0501035_0012886 3300049822 Bacteria 7721
193 Ga0501035_0015192 3300049822 Bacteria 7106
194 Ga0501035_0019704 3300049822 Bacteria 6198
195 Ga0501035_0043583 3300049822 Bacteria 4042
196 Ga0501035_0047946 3300049822 Bacteria 3832
197 Ga0501044_0002753 3300049823 Bacteria 20011
198 Ga0501044_0003304 3300049823 Bacteria 18172
199 Ga0501044_0003539 3300049823 Bacteria 17583
200 Ga0501044_0009605 3300049823 Bacteria 10526
201 Ga0501044_0043313 3300049823 Bacteria 4677
202 nmdc:mga0yw44_5947_c1 3300050492 Bacteria 5837
203 Ga0500635_0000004 3300053080 Bacteria 210675
204 Ga0495655_0001801 3300053083 Bacteria 3336
205 Ga0500643_000285 3300053087 Bacteria 43666
206 Ga0500556_0000168 3300053104 Bacteria 53779
207 Ga0500593_000670 3300053117 Bacteria 13053
208 Ga0500559_0001220 3300053136 Bacteria 15228
209 Ga0500559_0004611 3300053136 Bacteria 6511
210 Ga0500559_0006405 3300053136 Bacteria 5318
211 Ga0500568_0000044 3300053139 Bacteria 126099
212 Ga0500573_0000001 3300053140 Bacteria 436394
213 Ga0500573_0010087 3300053140 Bacteria 5264
214 Ga0500616_0001065 3300053153 Bacteria 28823
215 Ga0500645_002149 3300053730 Bacteria 9043
216 Ga0501084_0004001 3300054114 Bacteria 12003
217 2644178833 2643221631 Bacteria 8168043
218 2537898113 2537561592 Bacteria 4348607
219 2555231363 2554235227 Bacteria 3637389
220 2585302150 2582581312 Bacteria 7308206
221 2585315639 2582581314 Bacteria 11452267
222 2587864823 2585428094 Bacteria 3604039
223 2588106744 2585428157 Bacteria 3018951
224 2616697373 2616644814 Bacteria 11555299
225 2616906016 2616644941 Bacteria 8510691
226 2643765520 2643221548 Bacteria 8053412
227 2643888517 2643221575 Bacteria 4022601
228 2643898313 2643221578 Bacteria 9213798
229 2643944339 2643221587 Bacteria 7586415
230 2644017030 2643221601 Bacteria 7493239
231 2644083594 2643221613 Bacteria 4622396
232 2644095079 2643221616 Bacteria 4066575
233 2644180924 2643221632 Bacteria 3406696
234 2644277555 2643221649 Bacteria 3867359
235 2644385742 2643221670 Bacteria 6497041
236 2644409458 2643221673 Bacteria 9196637
237 2644431237 2643221677 Bacteria 7584031
238 2644462408 2643221682 Bacteria 6743283
239 2644503237 2643221690 Bacteria 4654705
240 2644525552 2643221694 Bacteria 4392972
241 2644664211 2643221721 Bacteria 4486924
242 2644669630 2643221722 Bacteria 4247614
243 2655033027 2654587600 Bacteria 3911798
244 2729908481 2728369276 Bacteria 5610032
245 2739602728 2739367653 Bacteria 2780952
246 2753302544 2751185788 Bacteria 4541048
247 2774383645 2773857759 Bacteria 2963774
248 2808885025 2808606368 Bacteria 3174172
249 2809226825 2808606447 Bacteria 3572005
250 2810364214 2808606700 Bacteria 3482157
251 2811848632 2808606982 Bacteria 7791042
252 2812364712 2811994880 Bacteria 4147780
253 2817508773 2816332305 Bacteria 2697803
254 2819693279 2818991463 Bacteria 7948711
255 2821269349 2821268502 Bacteria 3750023
256 2835189748 2835188231 Bacteria 3476928
257 2839987250 2839986021 Bacteria 3685650
258 2844841557 2844841374 Bacteria 3917147
259 2844856387 2844852863 Bacteria 3849151
260 2848552934 2848551377 Bacteria 3720646
261 2852633044 2852632344 Bacteria 3463163
262 2852646240 2852643534 Bacteria 3013378
263 2857713246 2857710386 Bacteria 3186771
264 2857727657 2857727296 Bacteria 2745552
265 2857732241 2857729791 Bacteria 4040535
266 2857740041 2857737099 Bacteria 3104305
267 2862579567 2862574272 Bacteria 10567477
268 2867371568 2867369537 Bacteria 6501581
269 2867477360 2867475112 Bacteria 6909112
270 2870624578 2870622029 Bacteria 3643329
271 2870629723 2870628048 Bacteria 3696012
272 2875394182 2875391855 Bacteria 7600475
273 2884996078 2884994152 Bacteria 4492978
274 2887445814 2887443736 Bacteria 4426037
275 2893686546 2893684298 Bacteria 2897960
276 2904434023 2904430863 Bacteria 3486923
277 2904503836 2904501621 Bacteria 3401437
278 2905927735 2905926851 Bacteria 4423176
279 2908676802 2908674828 Bacteria 3382763
280 2909077005 2909074476 Bacteria 3436050
281 2912760311 2912757875 Bacteria 7940295
282 2919039617 2919039151 Bacteria 3391018
283 2919043014 2919042368 Bacteria 3905917
284 2919057207 2919055335 Bacteria 3875751
285 2919527267 2919523602 Bacteria 3788128
286 2920882261 2920879853 Bacteria 4216831
287 2928105869 2928104781 Bacteria 3877447
288 2928124867 2928121344 Bacteria 3972376
289 2928154985 2928153084 Bacteria 4020257
290 2928503342 2928500415 Bacteria 3384541
291 2932433208 2932431166 Bacteria 4215299
292 2935891592 2935890801 Bacteria 4593001
293 2939660145 2939657138 Bacteria 3740283
294 2939663110 2939660829 Bacteria 3784848
295 2946005348 2946003308 Bacteria 3857229
296 2946034277 2946033335 Bacteria 3835514
297 2946050416 2946045630 Bacteria 8527308
298 2953999628 2953998280 Bacteria 4812144
299 2954004756 2954002825 Bacteria 9173742
300 2966602895 2966598605 Bacteria 7676064
301 2966921839 2966921586 Bacteria 3092803
302 2966926367 2966924647 Bacteria 3268643
303 2977251844 2977251589 Bacteria 2952848
304 2984554699 2984551494 Bacteria 3877562
305 2984582062 2984580707 Bacteria 3351387
306 2995726837 2995726249 Bacteria 3470435
307 2997456063 2997451912 Bacteria 8492419
308 2997601587 2997600082 Bacteria 9896405
309 3001892006 3001889506 Bacteria 2975194
310 3006321570 3006321560 Bacteria 8247479
311 3006393516 3006393351 Bacteria 6615579
312 3006486355 3006486233 Bacteria 8157040
313 3006499080 3006493962 Bacteria 8825450
314 8002812906 8002811521 Bacteria 2942897
315 8004023449 8004021418 Bacteria 4313954
316 8004026468 8004025490 Bacteria 4327753
317 8008487437 8008485437 Bacteria 7198341
318 8025526413 8025524527 Bacteria 7197316
319 8048136953 8048127548 Bacteria 11053136
320 8054160976 8054160619 Bacteria 7783213
321 8055037040 8055034563 Bacteria 3562128
322 8055040572 8055037949 Bacteria 3337834
323 8056037212 8056037122 Bacteria 3854319
324 8056448441 8056447290 Bacteria 7680491
325 8056672703 8056667051 Bacteria 6953971
326 8056830456 8056829672 Bacteria 9045328
327 JGI25164J39214_1000655
328 JGI25165J46597_1000044
329 Ga0007423J48922_100318
330 Ga0055539_1000027
331 Ga0055533_1000020
332 Ga0055525_1000151
333 Ga0055527_1000005
334 Ga0055542_1000006
335 Ga0055529_1000013
336 Ga0055541_1000849
337 Ga0070658_10000330
338 Ga0070658_10006072
339 Ga0070659_100014681
340 Ga0068852_100000700
341 Ga0068861_100032707
342 Ga0068851_10000001
343 Ga0081539_10018597
344 Ga0081539_10021092
345 Ga0075365_10008027
346 Ga0075363_100016944
347 Ga0075367_10001429
348 Ga0105237_10000738
349 Ga0105238_10003348
350 Ga0157371_10001174
351 Ga0157371_10037621
352 Ga0157370_10004526
353 Ga0157369_10000103
354 Ga0157369_10010472
355 Ga0206354_10250894
356 Ga0206353_10548987
357 Ga0213875_10007833
358 Ga0209566_100043
359 Ga0209674_100001
360 Ga0209672_100003
361 Ga0209147_100465
362 Ga0209563_100001
363 Ga0209563_100241
364 Ga0207427_100077
365 Ga0209437_100490
366 Ga0209677_100001
367 Ga0209148_1000004
368 Ga0209233_1000014
369 Ga0209455_1000046
370 Ga0209758_1002554
371 Ga0207656_10000002
372 Ga0207655_1005052
373 Ga0207647_10017516
374 Ga0207705_10000001
375 Ga0207671_10000002
376 Ga0207694_10000022
377 Ga0207698_10000063
378 Ga0207698_10000323
379 Ga0207428_10001744
380 Ga0307517_10018760
381 Ga0307515_10053741
382 Ga0307512_10032302
383 Ga0307512_10033149
384 Ga0307513_10046212
385 Ga0307408_100003596
386 Ga0307508_10006968
387 Ga0307508_10008074
388 Ga0307514_10030407
389 Ga0307405_10013821
390 Ga0307406_10000712
391 Ga0307406_10002614
392 Ga0307409_100002762
393 Ga0307416_100005999
394 Ga0307416_100014323
395 Ga0307414_10005690
396 Ga0307507_10014493
397 Ga0395898_0025358
398 Ga0395898_0046860
399 Ga0436364_0077614
400 Ga0400485_08773
401 Ga0400486_27583
402 Ga0439442_000001
403 Ga0439449_0002837
404 Ga0439457_005436
405 Ga0450907_000136
406 Ga0439434_0001269
407 Ga0450918_000474
408 Ga0466970_0000056
409 Ga0466970_0009318
410 Ga0466957_0026314
411 Ga0466960_0013867
412 Ga0466959_0004019
413 Ga0495592_0024849
414 Ga0495590_0000336
415 Ga0495629_0005284
416 Ga0495629_0011798
417 Ga0495629_0012853
418 Ga0495651_0000755
419 Ga0495651_0010101
420 Ga0495651_0019403
421 Ga0495664_0000276
422 Ga0495585_0018469
423 Ga0495596_0012770
424 Ga0495606_0016274
425 Ga0495616_0014410
426 Ga0495628_0027486
427 Ga0495631_0002908
428 Ga0495643_0003252
429 Ga0495654_0016992
430 Ga0495587_0007540
431 Ga0495609_0015489
432 Ga0495645_0012402
433 Ga0495634_0000467
434 Ga0495634_0040715
435 Ga0495625_0006514
436 Ga0495635_0000788
437 Ga0495646_0000179
438 Ga0495613_0002960
439 Ga0495624_0028091
440 Ga0495671_0013696
441 Ga0495600_0009000
442 Ga0495600_0015333
443 Ga0495674_0033098
444 Ga0495676_0004086
445 Ga0495676_0052703
446 Ga0495681_0005252
447 Ga0495681_0010010
448 Ga0495593_0001357
449 Ga0495614_0000193
450 Ga0496103_0004003
451 Ga0496105_0039554
452 Ga0496111_0023212
453 Ga0496113_0033606
454 Ga0496114_0039165
455 Ga0496115_0002074
456 Ga0496117_0011562
457 Ga0496117_0014794
458 Ga0496117_0016000
459 Ga0496118_0000640
460 Ga0496118_0014550
461 Ga0496119_0002830
462 Ga0496119_0006102
463 Ga0496119_0008109
464 Ga0496119_0024042
465 Ga0496121_0000025
466 Ga0496122_0000020
467 Ga0496122_0000534
468 Ga0496122_0000877
469 Ga0496122_0001607
470 Ga0496123_0000003
471 Ga0496123_0000142
472 Ga0496123_0001128
473 Ga0496123_0009800
474 Ga0496124_0000070
475 Ga0496124_0000461
476 Ga0496124_0006489
477 Ga0496125_0000120
478 Ga0496125_0000214
479 Ga0496125_0001049
480 Ga0496125_0002055
481 Ga0496126_0005931
482 Ga0501031_0002835
483 Ga0501033_0019768
484 Ga0501034_0006138
485 Ga0501034_0009553
486 Ga0501034_0015998
487 Ga0501036_0007340
488 Ga0501036_0021744
489 Ga0501037_0003899
490 Ga0501037_0004961
491 Ga0501038_0004309
492 Ga0501038_0013010
493 Ga0501038_0038577
494 Ga0501038_0054457
495 Ga0501041_0010248
496 Ga0501042_0012152
497 Ga0501043_0053021
498 Ga0501046_0002804
499 Ga0501046_0022600
500 Ga0501047_0000254
501 Ga0501047_0000770
502 Ga0501047_0001034
503 Ga0501047_0010677
504 Ga0501047_0020789
505 Ga0501067_0012464
506 Ga0501068_0006421
507 Ga0501070_0000044
508 Ga0501071_0000109
509 Ga0501071_0000629
510 Ga0501073_0000048
511 Ga0501073_0005223
512 Ga0501076_0014334
513 Ga0501079_0008455
514 Ga0501080_0000038
515 Ga0501083_0004610
516 Ga0501083_0028916
517 Ga0501035_0003710
518 Ga0501035_0012886
519 Ga0501035_0015192
520 Ga0501035_0019704
521 Ga0501035_0043583
522 Ga0501035_0047946
523 Ga0501044_0002753
524 Ga0501044_0003304
525 Ga0501044_0003539
526 Ga0501044_0009605
527 Ga0501044_0043313
528 nmdc:mga0yw44_5947_c1
529 Ga0500635_0000004
530 Ga0495655_0001801
531 Ga0500643_000285
532 Ga0500556_0000168
533 Ga0500593_000670
534 Ga0500559_0001220
535 Ga0500559_0004611
536 Ga0500559_0006405
537 Ga0500568_0000044
538 Ga0500573_0000001
539 Ga0500573_0010087
540 Ga0500616_0001065
541 Ga0500645_002149
542 Ga0501084_0004001
543 2644178833
544 2537898113
545 2555231363
546 2585302150
547 2585315639
548 2587864823
549 2588106744
550 2616697373
551 2616906016
552 2643765520
553 2643888517
554 2643898313
555 2643944339
556 2644017030
557 2644083594
558 2644095079
559 2644180924
560 2644277555
561 2644385742
562 2644409458
563 2644431237
564 2644462408
565 2644503237
566 2644525552
567 2644664211
568 2644669630
569 2655033027
570 2729908481
571 2739602728
572 2753302544
573 2774383645
574 2808885025
575 2809226825
576 2810364214
577 2811848632
578 2812364712
579 2817508773
580 2819693279
581 2821269349
582 2835189748
583 2839987250
584 2844841557
585 2844856387
586 2848552934
587 2852633044
588 2852646240
589 2857713246
590 2857727657
591 2857732241
592 2857740041
593 2862579567
594 2867371568
595 2867477360
596 2870624578
597 2870629723
598 2875394182
599 2884996078
600 2887445814
601 2893686546
602 2904434023
603 2904503836
604 2905927735
605 2908676802
606 2909077005
607 2912760311
608 2919039617
609 2919043014
610 2919057207
611 2919527267
612 2920882261
613 2928105869
614 2928124867
615 2928154985
616 2928503342
617 2932433208
618 2935891592
619 2939660145
620 2939663110
621 2946005348
622 2946034277
623 2946050416
624 2953999628
625 2954004756
626 2966602895
627 2966921839
628 2966926367
629 2977251844
630 2984554699
631 2984582062
632 2995726837
633 2997456063
634 2997601587
635 3001892006
636 3006321570
637 3006393516
638 3006486355
639 3006499080
640 8002812906
641 8004023449
642 8004026468
643 8008487437
644 8025526413
645 8048136953
646 8054160976
647 8055037040
648 8055040572
649 8056037212
650 8056448441
651 8056672703
652 8056830456

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF01043

SecA_PP_bind

SecA preprotein cross-linking domain

225

334

0.99

PF07517

SecA_DEAD

SecA DEAD-like domain

1

378

0.99

PF21090

P-loop_SecA

SecA P-loop domain

393

606

0.98

PF07516

SecA_SW

SecA Wing and Scaffold domain

608

823

0.96

Structural Annotation

Top 5 Hits

ID Description Score Start End
3bxz-assembly1.cif.gz_A crystal structure of the isolated dead motor domains from escherichia coli seca 0.9367 11 590
3bxz-assembly1.cif.gz_A crystal structure of the isolated dead motor domains from escherichia coli seca 0.9305 11 590
1tf2-assembly1.cif.gz_A crystal structure of seca:adp in an open conformation from bacillus subtilis 0.928 19 829
1tf5-assembly1.cif.gz_A crystal structure of seca in an open conformation from bacillus subtilis 0.9185 19 829
1tf2-assembly1.cif.gz_A crystal structure of seca:adp in an open conformation from bacillus subtilis 0.912 19 829
ID Description Score Start End Superfamily
af_P9WGP5_617_837_1.10.3060.10 Mainly Alpha;Orthogonal Bundle;Helical scaffold and wing domains of SecA;Helical scaffold and wing domains of SecA 0.9622 618 831 1.10.3060.10
af_A0A1D6MS70_87_296_3.40.50.300 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;P-loop containing nucleotide triphosphate hydrolases 0.9616 22 226 3.40.50.300
2ibmB01 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;P-loop containing nucleotide triphosphate hydrolases 0.944 13 398 3.40.50.300
1tf5A02 Alpha Beta;Alpha-Beta Complex;Pre-protein croslinking domain of SecA;SecA, preprotein cross-linking domain 0.9437 227 350 3.90.1440.10
2ibmB01 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;P-loop containing nucleotide triphosphate hydrolases 0.9371 13 398 3.40.50.300
ID Description Score Start End GO Terms
AF-A0A453HJD4-F1-model_v4 chloroplast protein-transporting ATPase (EC 7.4.2.4) 0.9852 17 178 GO:0005524
GO:0006605
GO:0006886
GO:0009941
GO:0016020
GO:0016464
GO:0017038
AF-A0A350PH04-F1-model_v4 Preprotein translocase subunit SecA 0.9851 378 490 GO:0005524
GO:0005829
GO:0005886
GO:0006605
GO:0006886
GO:0031522
GO:0043952
AF-A0A354U311-F1-model_v4 deleted 0.9815 387 492
AF-A0A6A7GBI7-F1-model_v4 Preprotein translocase subunit SecA 0.9793 407 593 GO:0005524
GO:0005829
GO:0005886
GO:0006605
GO:0006886
AF-A0A6B1PE52-F1-model_v4 deleted 0.9776 4 150

Map