F409677

General Info

Members Datasets Scaffolds Average Seq Length
329 204 658 484

Family's Representative Sequence

Representative Sequence 3300015261|Ga0182006_1018832|Ga0182006_10188322
Length 534
Sequence MRAFRASGEADATILVLRRRLRYRSDDRQAPHEDCAMLCARHSDPMPEDTTITVFDAARALAFIGDLSMGQPIDHSLRTAWLAGMISREAGCNAPQVEVARHVALLRWSGCTANAQEFADFLEDDVLGRRALLASPQPRLHQPHRAPIPGPVVAMAHIHCEIAGDIAGMLGLSPDVEAALRAIFEAYDGSGIPGVLRGKDVPLATYVVALASDLEIFSRLYGLDEALALARGRANSLYPEFLVEASSPHAREWMKLLDSPVAPWTGVADQPASMLRRVGLELVGDVSDLKLPWMTGYSRRVAKLARDCGTQLGMNEPLRQRMYKAGLIHGIGRAAVPNAIWNAPEPLPASSMERLRLVPYWTSRAAGQIDGLAAEAEIASFAFERRDGSGYFRGRSGMSMPLEGQIVAAAEQWVSHRTRRPWRPELTEAQSLARMHEDVEAGRFDQEVVTALLACALSGTPAKPAAPAPGDPSLSQRELEVLRCISRGDNTKQVARALSISPSTVRTHVERVFRKLGCSTRAAATLKASAKGLL

Samples

Sample ID Description Type Environment
1 3300015261 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-104_1 MetaG Metagenome Rhizosphere
2 3300002773 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMS Metagenome Endosphere
3 3300002774 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mTSA Metagenome Endosphere
4 3300002987 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mLB Metagenome Endosphere
5 3300003187 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mLB Metagenome Endosphere
6 3300003215 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF Metagenome Endosphere
7 3300003316 Sugarcane root Sample L1 Metagenome Unclassified
8 3300003322 Sugarcane root Sample L2 Metagenome Unclassified
9 3300003323 Sugarcane root Sample H1 Metagenome Unclassified
10 3300003354 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMS Metagenome Endosphere
11 3300003751 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mLB_r2 Metagenome Endosphere
12 3300003752 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mCL_r2 Metagenome Endosphere
13 3300003756 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mMS_r2 Metagenome Endosphere
14 3300003759 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mMF_r2 Metagenome Endosphere
15 3300003761 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mTSA_r2 Metagenome Endosphere
16 3300003762 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mMF_r2 Metagenome Endosphere
17 3300003771 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMF_r2 Metagenome Endosphere
18 3300003773 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mTSA_r2 Metagenome Endosphere
19 3300003775 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mCL_r2 Metagenome Endosphere
20 3300003781 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mLB_r2 Metagenome Endosphere
21 3300003784 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mLB_r2 Metagenome Endosphere
22 3300003790 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMS_r2 Metagenome Endosphere
23 3300003791 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 Metagenome Endosphere
24 3300003792 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mMS_r2 Metagenome Endosphere
25 3300003794 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 Metagenome Endosphere
26 3300003841 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mTSA_r2 Metagenome Endosphere
27 3300004625 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mMF_r2 Metagenome Endosphere
28 3300005262 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMF (version 2) (version 3) Metagenome Endosphere
29 3300005337 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3L metaG Metagenome Rhizosphere
30 3300005355 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG Metagenome Rhizosphere
31 3300005367 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG Metagenome Rhizosphere
32 3300005457 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG Metagenome Rhizosphere
33 3300005539 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 Metagenome Rhizosphere
34 3300005617 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 Metagenome Rhizosphere
35 3300005841 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 Metagenome Rhizosphere
36 3300005842 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 Metagenome Rhizosphere
37 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
38 3300005844 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 Metagenome Rhizosphere
39 3300006177 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-2 Metagenome Endosphere
40 3300006353 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 Metagenome Endosphere
41 3300006931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 (version 2) (version 2) Metagenome Rhizosphere
42 3300006944 Root nodule microbial communities of legume samples collected from California, USA - Cow pea red BW Metagenome Nodule
43 3300006946 Root nodule microbial communities of legume samples collected from California, USA - Medicago truncatula BG Metagenome Nodule
44 3300009101 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG Metagenome Rhizosphere
45 3300009148 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG Metagenome Rhizosphere
46 3300009177 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG Metagenome Rhizosphere
47 3300011119 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG Metagenome Rhizosphere
48 3300013102 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG Metagenome Rhizosphere
49 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
50 3300014325 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG Metagenome Rhizosphere
51 3300014968 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG Metagenome Rhizosphere
52 3300017792 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG Metagenome Rhizosphere
53 3300021361 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2 Metagenome Rhizosphere
54 3300025208 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mTSA (SPAdes) (version 2) Metagenome Endosphere
55 3300025224 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mLB_r2 (SPAdes) (version 2) Metagenome Endosphere
56 3300025225 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mTSA_r2 (SPAdes) (version 2) Metagenome Endosphere
57 3300025226 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mMS_r2 (SPAdes) (version 2) Metagenome Endosphere
58 3300025228 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mMS_r2 (SPAdes) (version 2) Metagenome Endosphere
59 3300025230 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mMF_r2 (SPAdes) (version 2) Metagenome Endosphere
60 3300025242 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mTSA_r2 (SPAdes) (version 2) Metagenome Endosphere
61 3300025245 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mTSA (SPAdes) (version 3) Metagenome Endosphere
62 3300025253 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
63 3300025254 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mMF_r2 (SPAdes) (version 2) Metagenome Endosphere
64 3300025258 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMS (SPAdes) (version 3) Metagenome Endosphere
65 3300025263 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mTSA_r2 (SPAdes) (version 3) Metagenome Endosphere
66 3300025273 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMS_r2 (SPAdes) (version 3) Metagenome Endosphere
67 3300025284 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mLB (SPAdes) (version 2) Metagenome Endosphere
68 3300025291 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mLB_r2 (SPAdes) (version 3) Metagenome Endosphere
69 3300025292 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mLB_r2 (SPAdes) (version 2) Metagenome Endosphere
70 3300025294 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mLB (SPAdes) (version 2) Metagenome Endosphere
71 3300025295 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMF_r2 (SPAdes) (version 3) Metagenome Endosphere
72 3300025297 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF (SPAdes) (version 2) Metagenome Endosphere
73 3300025298 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 (SPAdes) (version 2) Metagenome Endosphere
74 3300025299 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mCL_r2 (SPAdes) (version 3) Metagenome Endosphere
75 3300025302 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMS (SPAdes) (version 2) Metagenome Endosphere
76 3300025303 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mMS_r2 (SPAdes) (version 2) Metagenome Endosphere
77 3300025304 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
78 3300025900 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
79 3300025933 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
80 3300025935 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
81 3300026035 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes) (version 2) Metagenome Rhizosphere
82 3300026041 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes) (version 2) Metagenome Rhizosphere
83 3300027111 Root nodule microbial communities of legume samples collected from California, USA - Medicago truncatula BG (SPAdes) (version 2) Metagenome Nodule
84 3300028380 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes) (version 2) Metagenome Rhizosphere
85 3300028381 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) Metagenome Rhizosphere
86 3300028786 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 23_EM Metagenome Unclassified
87 3300028794 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM Metagenome Unclassified
88 3300031456 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 15_EM Metagenome Unclassified
89 3300031548 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3 Metagenome Rhizosphere
90 3300031616 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 9_EM Metagenome Unclassified
91 3300031649 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 16_EM Metagenome Unclassified
92 3300031731 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-1 Metagenome Rhizosphere
93 3300031901 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2 Metagenome Rhizosphere
94 3300031911 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1 Metagenome Rhizosphere
95 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
96 3300035691 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_NoN_4 Metagenome Rhizosphere
97 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
98 3300046452 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-351-Co3_11_46 rhizosphere Metagenome Rhizosphere
99 3300046453 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co3_8_57 rhizosphere Metagenome Rhizosphere
100 3300046457 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-133-Co2_50_25 rhizosphere Metagenome Rhizosphere
101 3300046460 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co3_31_37 rhizosphere Metagenome Rhizosphere
102 3300046463 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-866-CL3_75_7 rhizosphere Metagenome Rhizosphere
103 3300046471 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co3_9_34 rhizosphere Metagenome Rhizosphere
104 3300046492 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co3_21_57 rhizosphere Metagenome Rhizosphere
105 3300046501 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co3_27_41 rhizosphere Metagenome Rhizosphere
106 3300046506 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co1_30_3 rhizosphere Metagenome Rhizosphere
107 3300046507 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co2_62_14 rhizosphere Metagenome Rhizosphere
108 3300046512 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co2_50_17 rhizosphere Metagenome Rhizosphere
109 3300046513 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-351-Co2_42_17 rhizosphere Metagenome Rhizosphere
110 3300046515 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co2_62_25 rhizosphere Metagenome Rhizosphere
111 3300046518 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co1_22_4 rhizosphere Metagenome Rhizosphere
112 3300046519 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co2_51_16 rhizosphere Metagenome Rhizosphere
113 3300046520 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co2_47_23 rhizosphere Metagenome Rhizosphere
114 3300046522 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 rhizosphere Metagenome Rhizosphere
115 3300046524 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co1_12_9 rhizosphere Metagenome Rhizosphere
116 3300046530 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-866-Co1_10_5 rhizosphere Metagenome Rhizosphere
117 3300046542 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co2_52_27 rhizosphere Metagenome Rhizosphere
118 3300046557 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL1_25_34 rhizosphere Metagenome Rhizosphere
119 3300046558 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co3_6_53 rhizosphere Metagenome Rhizosphere
120 3300046616 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co1_14_4 rhizosphere Metagenome Rhizosphere
121 3300046660 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co1_32_7 rhizosphere Metagenome Rhizosphere
122 3300046691 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co3_14_51 rhizosphere Metagenome Rhizosphere
123 3300046692 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co1_37_5 rhizosphere Metagenome Rhizosphere
124 3300046794 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-133-Co1_27_3 rhizosphere Metagenome Rhizosphere
125 3300046810 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co2_51_17 rhizosphere Metagenome Rhizosphere
126 3300047321 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL3_98_5 rhizosphere Metagenome Rhizosphere
127 3300047443 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co3_24_32 rhizosphere Metagenome Rhizosphere
128 3300047445 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co1_16_8 rhizosphere Metagenome Rhizosphere
129 3300047472 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co2_54_22 rhizosphere Metagenome Rhizosphere
130 3300047673 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-198-CL3_81_33 rhizosphere Metagenome Rhizosphere
131 3300048904 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7w unlabeled Metagenome Rhizoplane
132 3300048905 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1c N15 Metagenome Rhizoplane
133 3300048915 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5c N15 Metagenome Rhizoplane
134 3300048917 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6c N15 Metagenome Rhizoplane
135 3300048920 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1e N15 Metagenome Unclassified
136 3300048921 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1f N15 Metagenome Unclassified
137 3300048924 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_3e N15 Metagenome Unclassified
138 3300048925 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8x unlabeled Metagenome Unclassified
139 3300048926 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8y unlabeled Metagenome Unclassified
140 3300048927 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_4e N15 Metagenome Unclassified
141 3300048928 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_5e N15 Metagenome Unclassified
142 3300049459 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co2_62_24 rhizosphere Metagenome Rhizosphere
143 3300050489 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-2 re-annotation Metagenome Endosphere
144 3300050493 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 re-annotation Metagenome Endosphere
145 3300050496 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 re-annotation Metagenome Endosphere
146 3300050516 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-4 re-annotation Metagenome Endosphere
147 3300053079 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co2_47_23 endosphere Metagenome Endosphere
148 3300053086 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co2_62_14 endosphere Metagenome Endosphere
149 3300053087 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co3_14_51 endosphere Metagenome Endosphere
150 3300053093 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co2_62_24 endosphere Metagenome Endosphere
151 3300053094 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-234-CL1_24_28 endosphere Metagenome Endosphere
152 3300053110 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-258-CL1_34_5 endosphere Metagenome Endosphere
153 3300053116 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co1_23_6 endosphere Metagenome Endosphere
154 3300053117 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co2_62_25 endosphere Metagenome Endosphere
155 3300053121 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL2_42_16 endosphere Metagenome Endosphere
156 3300053130 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co2_44_8 endosphere Metagenome Endosphere
157 3300053131 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co3_35_48 endosphere Metagenome Endosphere
158 3300053133 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWA-24-3-Co2_41_10 endosphere Metagenome Endosphere
159 3300053134 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co1_7_5 endosphere Metagenome Endosphere
160 3300053136 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL2_62_7 endosphere Metagenome Endosphere
161 3300053138 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-198-CL2_38_5 endosphere Metagenome Endosphere
162 3300053139 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co1_23_3 endosphere Metagenome Endosphere
163 3300053153 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 endosphere Metagenome Endosphere
164 3300053154 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL2_38_7 endosphere Metagenome Endosphere
165 3300053156 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 endosphere Metagenome Endosphere
166 3300053158 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-866-Co1_10_5 endosphere Metagenome Endosphere
167 3300053162 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-4579-CL1_25_23 endosphere Metagenome Endosphere
168 3300053177 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL1_23_5 endosphere Metagenome Endosphere
169 2585428057 Methylibium sp. YR605 Isolate Rhizosphere
170 2585428058 Methylibium sp. CF468 Isolate Rhizosphere
171 2585428062 Methylibium sp. CF059 Isolate Rhizosphere
172 2588253510 Rhizobacter sp. OV335 Isolate Rhizosphere
173 2599185214 Variovorax sp. NFACC26 Isolate Rhizoplane
174 2599185226 Variovorax sp. NFACC27 Isolate Rhizoplane
175 2599185227 Variovorax sp. NFACC28 Isolate Rhizoplane
176 2599185229 Variovorax sp. NFACC29 Isolate Endosphere
177 2643221592 Rhizobacter sp. Root16D2 Isolate Unclassified
178 2643221625 Rhizobacter sp. Root29 Isolate Unclassified
179 2643221648 Rhizobacter sp. Root1238 Isolate Unclassified
180 2643221658 Variovorax sp. Root411 Isolate Unclassified
181 2643221683 Variovorax sp. Root473 Isolate Unclassified
182 2738541277 Variovorax sp. GV051 Isolate Unclassified
183 2738541307 Variovorax sp. GV008 Isolate Unclassified
184 2738543019 Variovorax sp. GV040 Isolate Unclassified
185 2818991446 Variovorax sp. 1180 Isolate Unclassified
186 2831265667 Variovorax guangxiensis DSM 27352 Isolate Rhizosphere
187 2838054893 Variovorax guangxiensis 34/80 Isolate Nodule
188 2857576091 Pigmentiphaga sp. R-72090 Isolate Unclassified
189 2885198086 Variovorax sp. 679 Isolate Unclassified
190 2885211737 Variovorax sp. 553 Isolate Unclassified
191 2899924645 Variovorax sp. 369 Isolate Unclassified
192 2904449895 Variovorax sp. 1763 Isolate Rhizosphere
193 2904456579 Variovorax sp. 2002 Isolate Unclassified
194 2904541872 Variovorax sp. 1615 Isolate Rhizosphere
195 2928037797 Variovorax sp. 1126 Isolate Unclassified
196 2928044640 Variovorax sp. 1128 Isolate Unclassified
197 2928051484 Variovorax sp. 1133 Isolate Unclassified
198 2928064002 Variovorax sp. 1140 Isolate Rhizosphere
199 2928070936 Variovorax gossypii 1167 Isolate Unclassified
200 2928084124 Variovorax paradoxus 1218 Isolate Unclassified
201 2929160207 Variovorax sp. R-72349 Hybrid assembly Isolate Unclassified
202 2945909444 Variovorax sp. CRF3-Va-1 W1I1 Isolate Rhizosphere
203 2945984333 Variovorax sp. W2I14 Isolate Rhizosphere
204 2954767861 Variovorax sp. TBS-050B Isolate Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 85.71
Metatranscriptomes 0
Isolates 14.29

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 50.15
Nodule 1.22
Rhizoplane 3.65
Rhizosphere 30.09
Stem 0
Stem Tuber 0
Unclassified 0

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0182006_1018832 3300015261 Bacteria 2912
2 JGI25152J39213_1000532 3300002773 Bacteria 21030
3 JGI25152J39213_1004557 3300002773 Bacteria 4326
4 JGI25152J39213_1014715 3300002773 Bacteria 1574
5 JGI25150J39212_1000489 3300002774 Bacteria 16689
6 JGI25159J45721_1000405 3300002987 Bacteria 20050
7 JGI25151J46595_10000323 3300003187 Bacteria 51894
8 JGI25151J46595_10000958 3300003187 Bacteria 22047
9 JGI25151J46595_10001020 3300003187 Bacteria 21030
10 JGI25151J46595_10001187 3300003187 Bacteria 18756
11 JGI25151J46595_10001241 3300003187 Bacteria 18165
12 JGI25153J46596_10000667 3300003215 Bacteria 21030
13 JGI25153J46596_10000835 3300003215 Bacteria 18816
14 JGI25153J46596_10005763 3300003215 Bacteria 6453
15 rootH1_10006701 3300003316 Bacteria 17835
16 rootL2_10000915 3300003322 Bacteria 16944
17 rootL2_10002151 3300003322 Bacteria 70803
18 rootH1_10002339 3300003323 Bacteria 35435
19 rootH1_10044523 3300003323 Bacteria 2057
20 rootH1_10061564 3300003323 Bacteria 10695
21 JGI25160J50197_1000610 3300003354 Bacteria 20050
22 JGI25160J50197_1021876 3300003354 Bacteria 1887
23 Ga0055538_1000059 3300003751 Bacteria 112508
24 Ga0055539_1000089 3300003752 Bacteria 112508
25 Ga0055533_1000098 3300003756 Bacteria 112508
26 Ga0055525_1000130 3300003759 Bacteria 112508
27 Ga0055535_1000624 3300003761 Bacteria 28617
28 Ga0055542_1000029 3300003762 Bacteria 248836
29 Ga0055526_1001065 3300003771 Bacteria 20050
30 Ga0055526_1002006 3300003771 Bacteria 14023
31 Ga0055537_1000558 3300003773 Bacteria 21027
32 Ga0055537_1011191 3300003773 Bacteria 1838
33 Ga0055524_1000061 3300003775 Bacteria 135241
34 Ga0055524_1000181 3300003775 Bacteria 71026
35 Ga0055524_1000847 3300003775 Bacteria 20050
36 Ga0055524_1002704 3300003775 Bacteria 8960
37 Ga0055536_1002239 3300003781 Bacteria 11008
38 Ga0055536_1005499 3300003781 Bacteria 6177
39 Ga0055534_1000524 3300003784 Bacteria 20674
40 Ga0055534_1009089 3300003784 Bacteria 2189
41 Ga0055528_1000834 3300003790 Bacteria 21027
42 Ga0055528_1024066 3300003790 Bacteria 1838
43 Ga0055530_10002276 3300003791 Bacteria 12614
44 Ga0055530_10002372 3300003791 Bacteria 12207
45 Ga0055540_1000026 3300003792 Bacteria 189071
46 Ga0055540_1000754 3300003792 Bacteria 21953
47 Ga0055540_1002207 3300003792 Bacteria 10575
48 Ga0055531_10000001 3300003794 Bacteria 543586
49 Ga0055531_10000887 3300003794 Bacteria 24452
50 Ga0055531_10001106 3300003794 Bacteria 20968
51 Ga0055531_10002488 3300003794 Bacteria 12289
52 Ga0055531_10004646 3300003794 Bacteria 8247
53 Ga0055531_10004901 3300003794 Bacteria 7965
54 Ga0055541_1000061 3300003841 Bacteria 112508
55 Ga0055543_1000420 3300004625 Bacteria 26756
56 Ga0065165_1001375 3300005262 Bacteria 26747
57 Ga0065165_1002501 3300005262 Bacteria 15376
58 Ga0070682_100033523 3300005337 Bacteria 3121
59 Ga0070671_100008902 3300005355 Bacteria 8053
60 Ga0070667_100002352 3300005367 Bacteria 16562
61 Ga0070662_100006713 3300005457 Bacteria 7437
62 Ga0068853_100045506 3300005539 Bacteria 3758
63 Ga0068859_100016257 3300005617 Bacteria 7474
64 Ga0068863_100018807 3300005841 Bacteria 6611
65 Ga0068858_100012190 3300005842 Bacteria 8105
66 Ga0068860_100004425 3300005843 Bacteria 14344
67 Ga0068862_100059278 3300005844 Bacteria 3287
68 Ga0075362_10000441 3300006177 Bacteria 12035
69 Ga0075370_10001707 3300006353 Bacteria 9755
70 Ga0075370_10002051 3300006353 Bacteria 9156
71 Ga0097620_100016259 3300006931 Bacteria 7474
72 Ga0099823_1000046 3300006944 Bacteria 60074
73 Ga0079104_1000093 3300006946 Bacteria 130633
74 Ga0105247_10007501 3300009101 Bacteria 6685
75 Ga0105243_10002397 3300009148 Bacteria 15714
76 Ga0105243_10005893 3300009148 Bacteria 9490
77 Ga0105248_10170233 3300009177 Bacteria 2455
78 Ga0105246_10121654 3300011119 Bacteria 1935
79 Ga0157371_10000001 3300013102 Bacteria 1162285
80 Ga0157370_10001005 3300013104 Bacteria 35589
81 Ga0157370_10002380 3300013104 Bacteria 22682
82 Ga0163163_10001797 3300014325 Bacteria 18072
83 Ga0157379_10020057 3300014968 Bacteria 5908
84 Ga0163161_10000079 3300017792 Bacteria 97522
85 Ga0163161_10001834 3300017792 Bacteria 15516
86 Ga0163161_10009535 3300017792 Bacteria 6714
87 Ga0213872_10020818 3300021361 Bacteria 3021
88 Ga0209436_101337 3300025208 Bacteria 8718
89 Ga0209436_109232 3300025208 Bacteria 1897
90 Ga0209784_100018 3300025224 Bacteria 456816
91 Ga0209566_100016 3300025225 Bacteria 456824
92 Ga0209674_100030 3300025226 Bacteria 456824
93 Ga0209672_100557 3300025228 Bacteria 19969
94 Ga0209563_100034 3300025230 Bacteria 456824
95 Ga0209258_100018 3300025242 Bacteria 567561
96 Ga0207425_1000282 3300025245 Bacteria 37515
97 Ga0207425_1005613 3300025245 Bacteria 3547
98 Ga0209677_100019 3300025253 Bacteria 456824
99 Ga0209148_1000030 3300025254 Bacteria 567582
100 Ga0209129_1000041 3300025258 Bacteria 307590
101 Ga0209129_1000436 3300025258 Bacteria 31077
102 Ga0209129_1003151 3300025258 Bacteria 7388
103 Ga0209565_1000165 3300025263 Bacteria 86871
104 Ga0209565_1001400 3300025263 Bacteria 10736
105 Ga0209565_1001938 3300025263 Bacteria 8133
106 Ga0209673_1000216 3300025273 Bacteria 114232
107 Ga0209673_1001101 3300025273 Bacteria 30262
108 Ga0209673_1003479 3300025273 Bacteria 9248
109 Ga0209673_1015974 3300025273 Bacteria 2827
110 Ga0209130_1000427 3300025284 Bacteria 45224
111 Ga0209130_1000646 3300025284 Bacteria 32516
112 Ga0209130_1002654 3300025284 Bacteria 8558
113 Ga0209675_1000321 3300025291 Bacteria 43024
114 Ga0209675_1005589 3300025291 Bacteria 5225
115 Ga0209675_1017206 3300025291 Bacteria 2071
116 Ga0209676_1000004 3300025292 Bacteria 1138360
117 Ga0209676_1001150 3300025292 Bacteria 28948
118 Ga0209676_1002480 3300025292 Bacteria 12997
119 Ga0209025_1000029 3300025294 Bacteria 488571
120 Ga0209025_1000208 3300025294 Bacteria 140415
121 Ga0209025_1000230 3300025294 Bacteria 131131
122 Ga0209025_1000244 3300025294 Bacteria 127938
123 Ga0209025_1001318 3300025294 Bacteria 33769
124 Ga0209025_1011162 3300025294 Bacteria 5973
125 Ga0209025_1013308 3300025294 Bacteria 5184
126 Ga0209564_1000029 3300025295 Bacteria 505995
127 Ga0209564_1000070 3300025295 Bacteria 303126
128 Ga0209564_1000352 3300025295 Bacteria 85941
129 Ga0209758_1000043 3300025297 Bacteria 402310
130 Ga0209758_1000057 3300025297 Bacteria 333111
131 Ga0209758_1000297 3300025297 Bacteria 97664
132 Ga0209758_1024233 3300025297 Bacteria 2711
133 Ga0209050_1000002 3300025298 Bacteria 1792849
134 Ga0209050_1000228 3300025298 Bacteria 123537
135 Ga0209050_1000270 3300025298 Bacteria 110916
136 Ga0209050_1001361 3300025298 Bacteria 26758
137 Ga0209050_1002585 3300025298 Bacteria 15027
138 Ga0209050_1004325 3300025298 Bacteria 9689
139 Ga0209050_1008363 3300025298 Bacteria 5548
140 Ga0209256_1000030 3300025299 Bacteria 414828
141 Ga0209256_1000047 3300025299 Bacteria 314709
142 Ga0209256_1000075 3300025299 Bacteria 236149
143 Ga0209256_1000238 3300025299 Bacteria 97664
144 Ga0209256_1000614 3300025299 Bacteria 49314
145 Ga0207426_1000194 3300025302 Bacteria 150009
146 Ga0207426_1000294 3300025302 Bacteria 98700
147 Ga0209051_1000002 3300025303 Bacteria 1631846
148 Ga0209051_1000004 3300025303 Bacteria 1155596
149 Ga0209051_1000128 3300025303 Bacteria 142159
150 Ga0209051_1000869 3300025303 Bacteria 30576
151 Ga0209051_1002371 3300025303 Bacteria 13618
152 Ga0209051_1003219 3300025303 Bacteria 10897
153 Ga0209051_1019531 3300025303 Bacteria 2952
154 Ga0209257_1000002 3300025304 Bacteria 1767052
155 Ga0209257_1000033 3300025304 Bacteria 671006
156 Ga0209257_1000162 3300025304 Bacteria 175776
157 Ga0209257_1000423 3300025304 Bacteria 81354
158 Ga0209257_1001472 3300025304 Bacteria 27715
159 Ga0209257_1003015 3300025304 Bacteria 15235
160 Ga0209257_1007164 3300025304 Bacteria 6854
161 Ga0207710_10000471 3300025900 Bacteria 25737
162 Ga0207706_10001032 3300025933 Bacteria 28316
163 Ga0207709_10000587 3300025935 Bacteria 30442
164 Ga0207709_10012331 3300025935 Bacteria 4710
165 Ga0207703_10014361 3300026035 Bacteria 6177
166 Ga0207639_10050300 3300026041 Bacteria 3165
167 Ga0209281_1000084 3300027111 Bacteria 254215
168 Ga0268265_10053295 3300028380 Bacteria 3064
169 Ga0268264_10010370 3300028381 Bacteria 7705
170 Ga0307517_10002271 3300028786 Bacteria 30996
171 Ga0307515_10008063 3300028794 Bacteria 20644
172 Ga0307513_10047112 3300031456 Bacteria 4692
173 Ga0307513_10060042 3300031456 Bacteria 4033
174 Ga0307513_10137156 3300031456 Bacteria 2380
175 Ga0307408_100001479 3300031548 Bacteria 17438
176 Ga0307508_10008944 3300031616 Bacteria 9225
177 Ga0307514_10094196 3300031649 Bacteria 2172
178 Ga0307405_10007381 3300031731 Bacteria 5492
179 Ga0307405_10036652 3300031731 Bacteria 2940
180 Ga0307406_10005909 3300031901 Bacteria 6714
181 Ga0307412_10005228 3300031911 Bacteria 7277
182 Ga0307412_10029732 3300031911 Bacteria 3431
183 Ga0307416_100029768 3300032002 Bacteria 4085
184 Ga0307416_100063775 3300032002 Bacteria 3019
185 Ga0373931_0002028 3300035691 Bacteria 8917
186 Ga0395905_0013052 3300037471 Bacteria 7980
187 Ga0495617_000876 3300046452 Bacteria 14182
188 Ga0495627_036183 3300046453 Bacteria 1535
189 Ga0495590_0000019 3300046457 Bacteria 213272
190 Ga0495638_0000115 3300046460 Bacteria 129129
191 Ga0495653_0075503 3300046463 Bacteria 2508
192 Ga0495650_0000921 3300046471 Bacteria 34549
193 Ga0495585_0060876 3300046492 Bacteria 2077
194 Ga0495607_0000009 3300046501 Bacteria 216674
195 Ga0495583_0000126 3300046506 Bacteria 128985
196 Ga0495606_0000583 3300046507 Bacteria 57929
197 Ga0495606_0083801 3300046507 Bacteria 1976
198 Ga0495610_0047831 3300046512 Bacteria 2102
199 Ga0495616_0001600 3300046513 Bacteria 15514
200 Ga0495620_0006001 3300046515 Bacteria 6723
201 Ga0495631_0000007 3300046518 Bacteria 130158
202 Ga0495632_0008997 3300046519 Bacteria 6060
203 Ga0495637_0001529 3300046520 Bacteria 13534
204 Ga0495637_0021817 3300046520 Bacteria 2930
205 Ga0495643_0000130 3300046522 Bacteria 121749
206 Ga0495643_0079089 3300046522 Bacteria 1715
207 Ga0495648_0000004 3300046524 Bacteria 373639
208 Ga0495654_0004606 3300046530 Bacteria 8142
209 Ga0495597_0000143 3300046542 Bacteria 63995
210 Ga0495622_0000142 3300046557 Bacteria 61706
211 Ga0495633_0000146 3300046558 Bacteria 94353
212 Ga0495668_0000808 3300046616 Bacteria 35909
213 Ga0495625_0000369 3300046660 Bacteria 68884
214 Ga0495625_0003291 3300046660 Bacteria 16304
215 Ga0495625_0016904 3300046660 Bacteria 5726
216 Ga0495670_0020612 3300046691 Bacteria 3251
217 Ga0495671_0003272 3300046692 Bacteria 10047
218 Ga0495589_0000033 3300046794 Bacteria 162794
219 Ga0495660_0006121 3300046810 Bacteria 7143
220 Ga0495676_0000324 3300047321 Bacteria 38811
221 Ga0495687_000017 3300047443 Bacteria 350429
222 Ga0495687_004283 3300047443 Bacteria 9742
223 Ga0495687_004307 3300047443 Bacteria 9694
224 Ga0495677_0017343 3300047445 Bacteria 2611
225 Ga0495686_0052047 3300047472 Bacteria 2568
226 Ga0495593_0000712 3300047673 Bacteria 19228
227 Ga0496101_0002437 3300048904 Bacteria 11435
228 Ga0496101_0043215 3300048904 Bacteria 3220
229 Ga0496102_0024705 3300048905 Bacteria 5344
230 Ga0496102_0060062 3300048905 Bacteria 3478
231 Ga0496112_0290439 3300048915 Bacteria 1581
232 Ga0496114_0004364 3300048917 Bacteria 10953
233 Ga0496117_0019997 3300048920 Bacteria 5476
234 Ga0496117_0062551 3300048920 Bacteria 2550
235 Ga0496117_0101990 3300048920 Bacteria 1812
236 Ga0496118_0015690 3300048921 Bacteria 6995
237 Ga0496121_0099819 3300048924 Bacteria 2242
238 Ga0496122_0043001 3300048925 Bacteria 3545
239 Ga0496123_0005675 3300048926 Bacteria 12456
240 Ga0496123_0040447 3300048926 Bacteria 3246
241 Ga0496124_0013232 3300048927 Bacteria 8069
242 Ga0496125_0086406 3300048928 Bacteria 2372
243 Ga0496125_0100118 3300048928 Bacteria 2137
244 Ga0495678_012116 3300049459 Bacteria 4096
245 Ga0495678_015143 3300049459 Bacteria 3559
246 nmdc:mga03683_424_c1 3300050489 Bacteria 12206
247 nmdc:mga0k408_5694_c1 3300050493 Bacteria 6626
248 nmdc:mga07m45_2553_c1 3300050496 Bacteria 8557
249 nmdc:mga07m45_4478_c1 3300050496 Bacteria 6834
250 nmdc:mga07m45_53010_c1 3300050496 Bacteria 2292
251 nmdc:mga0sz30_51447_c1 3300050516 Bacteria 1747
252 Ga0500610_0002208 3300053079 Bacteria 7040
253 Ga0500610_0003654 3300053079 Bacteria 5956
254 Ga0500578_0000122 3300053086 Bacteria 94493
255 Ga0500643_007781 3300053087 Bacteria 4276
256 Ga0500651_0000044 3300053093 Bacteria 86444
257 Ga0500566_0029625 3300053094 Bacteria 3197
258 Ga0500571_000243 3300053110 Bacteria 20532
259 Ga0500592_002075 3300053116 Bacteria 3230
260 Ga0500593_000446 3300053117 Bacteria 16309
261 Ga0500593_000874 3300053117 Bacteria 11186
262 Ga0500593_012708 3300053117 Bacteria 3577
263 Ga0500607_000680 3300053121 Bacteria 32855
264 Ga0500607_005281 3300053121 Bacteria 8480
265 Ga0500607_009343 3300053121 Bacteria 5904
266 Ga0500607_010026 3300053121 Bacteria 5672
267 Ga0500642_0036039 3300053130 Bacteria 2105
268 Ga0500652_001169 3300053131 Bacteria 8383
269 Ga0500655_000060 3300053133 Bacteria 30372
270 Ga0500658_0000028 3300053134 Bacteria 105688
271 Ga0500658_0000094 3300053134 Bacteria 40740
272 Ga0500559_0001732 3300053136 Bacteria 11960
273 Ga0500559_0042354 3300053136 Bacteria 1986
274 Ga0500564_004778 3300053138 Bacteria 5467
275 Ga0500568_0016430 3300053139 Bacteria 3291
276 Ga0500616_0018090 3300053153 Bacteria 3987
277 Ga0500619_000218 3300053154 Bacteria 13100
278 Ga0500622_0001331 3300053156 Bacteria 20020
279 Ga0500622_0031834 3300053156 Bacteria 2767
280 Ga0500627_0005947 3300053158 Bacteria 4102
281 Ga0500638_003556 3300053162 Bacteria 5792
282 Ga0500636_0006895 3300053177 Bacteria 6546
283 2587726402 2585428057 Bacteria 6737412
284 2587731797 2585428058 Bacteria 6853932
285 2587755393 2585428062 Bacteria 6842168
286 2588292315 2588253510 Bacteria 6901809
287 2599624782 2599185214 Bacteria 8209958
288 2599625245 2599185214 Bacteria 8209958
289 2599672794 2599185226 Bacteria 8233575
290 2599673303 2599185226 Bacteria 8233575
291 2599682756 2599185227 Bacteria 8246414
292 2599682973 2599185227 Bacteria 8246414
293 2599694403 2599185229 Bacteria 8216126
294 2599694911 2599185229 Bacteria 8216126
295 2643970809 2643221592 Bacteria 6608788
296 2644138918 2643221625 Bacteria 6512927
297 2644273851 2643221648 Bacteria 6521465
298 2644329518 2643221658 Bacteria 6064537
299 2644464260 2643221683 Bacteria 5749203
300 2738718874 2738541277 Bacteria 7458140
301 2738878833 2738541307 Bacteria 8606193
302 2738881233 2738541307 Bacteria 8606193
303 2739280892 2738543019 Bacteria 7459457
304 2819600827 2818991446 Bacteria 7757362
305 2831267424 2831265667 Bacteria 7184833
306 2838060382 2838054893 Bacteria 7451788
307 2857578105 2857576091 Bacteria 5465855
308 2885198289 2885198086 Bacteria 7212419
309 2885203493 2885198086 Bacteria 7212419
310 2885212331 2885211737 Bacteria 7212420
311 2885217157 2885211737 Bacteria 7212420
312 2899931617 2899924645 Bacteria 7487985
313 2904453872 2904449895 Bacteria 6927402
314 2904462348 2904456579 Bacteria 6819253
315 2904542785 2904541872 Bacteria 8915136
316 2904544205 2904541872 Bacteria 8915136
317 2928042997 2928037797 Bacteria 7273642
318 2928050344 2928044640 Bacteria 7271509
319 2928056629 2928051484 Bacteria 7773759
320 2928068913 2928064002 Bacteria 7419480
321 2928074823 2928070936 Bacteria 8062541
322 2928077741 2928070936 Bacteria 8062541
323 2928090615 2928084124 Bacteria 7159212
324 2929162223 2929160207 Bacteria 9075316
325 2929168034 2929160207 Bacteria 9075316
326 2945911210 2945909444 Bacteria 7065066
327 2945914467 2945909444 Bacteria 7065066
328 2945986502 2945984333 Bacteria 7358892
329 2954771814 2954767861 Bacteria 5535784
330 Ga0182006_1018832
331 JGI25152J39213_1000532
332 JGI25152J39213_1004557
333 JGI25152J39213_1014715
334 JGI25150J39212_1000489
335 JGI25159J45721_1000405
336 JGI25151J46595_10000323
337 JGI25151J46595_10000958
338 JGI25151J46595_10001020
339 JGI25151J46595_10001187
340 JGI25151J46595_10001241
341 JGI25153J46596_10000667
342 JGI25153J46596_10000835
343 JGI25153J46596_10005763
344 rootH1_10006701
345 rootL2_10000915
346 rootL2_10002151
347 rootH1_10002339
348 rootH1_10044523
349 rootH1_10061564
350 JGI25160J50197_1000610
351 JGI25160J50197_1021876
352 Ga0055538_1000059
353 Ga0055539_1000089
354 Ga0055533_1000098
355 Ga0055525_1000130
356 Ga0055535_1000624
357 Ga0055542_1000029
358 Ga0055526_1001065
359 Ga0055526_1002006
360 Ga0055537_1000558
361 Ga0055537_1011191
362 Ga0055524_1000061
363 Ga0055524_1000181
364 Ga0055524_1000847
365 Ga0055524_1002704
366 Ga0055536_1002239
367 Ga0055536_1005499
368 Ga0055534_1000524
369 Ga0055534_1009089
370 Ga0055528_1000834
371 Ga0055528_1024066
372 Ga0055530_10002276
373 Ga0055530_10002372
374 Ga0055540_1000026
375 Ga0055540_1000754
376 Ga0055540_1002207
377 Ga0055531_10000001
378 Ga0055531_10000887
379 Ga0055531_10001106
380 Ga0055531_10002488
381 Ga0055531_10004646
382 Ga0055531_10004901
383 Ga0055541_1000061
384 Ga0055543_1000420
385 Ga0065165_1001375
386 Ga0065165_1002501
387 Ga0070682_100033523
388 Ga0070671_100008902
389 Ga0070667_100002352
390 Ga0070662_100006713
391 Ga0068853_100045506
392 Ga0068859_100016257
393 Ga0068863_100018807
394 Ga0068858_100012190
395 Ga0068860_100004425
396 Ga0068862_100059278
397 Ga0075362_10000441
398 Ga0075370_10001707
399 Ga0075370_10002051
400 Ga0097620_100016259
401 Ga0099823_1000046
402 Ga0079104_1000093
403 Ga0105247_10007501
404 Ga0105243_10002397
405 Ga0105243_10005893
406 Ga0105248_10170233
407 Ga0105246_10121654
408 Ga0157371_10000001
409 Ga0157370_10001005
410 Ga0157370_10002380
411 Ga0163163_10001797
412 Ga0157379_10020057
413 Ga0163161_10000079
414 Ga0163161_10001834
415 Ga0163161_10009535
416 Ga0213872_10020818
417 Ga0209436_101337
418 Ga0209436_109232
419 Ga0209784_100018
420 Ga0209566_100016
421 Ga0209674_100030
422 Ga0209672_100557
423 Ga0209563_100034
424 Ga0209258_100018
425 Ga0207425_1000282
426 Ga0207425_1005613
427 Ga0209677_100019
428 Ga0209148_1000030
429 Ga0209129_1000041
430 Ga0209129_1000436
431 Ga0209129_1003151
432 Ga0209565_1000165
433 Ga0209565_1001400
434 Ga0209565_1001938
435 Ga0209673_1000216
436 Ga0209673_1001101
437 Ga0209673_1003479
438 Ga0209673_1015974
439 Ga0209130_1000427
440 Ga0209130_1000646
441 Ga0209130_1002654
442 Ga0209675_1000321
443 Ga0209675_1005589
444 Ga0209675_1017206
445 Ga0209676_1000004
446 Ga0209676_1001150
447 Ga0209676_1002480
448 Ga0209025_1000029
449 Ga0209025_1000208
450 Ga0209025_1000230
451 Ga0209025_1000244
452 Ga0209025_1001318
453 Ga0209025_1011162
454 Ga0209025_1013308
455 Ga0209564_1000029
456 Ga0209564_1000070
457 Ga0209564_1000352
458 Ga0209758_1000043
459 Ga0209758_1000057
460 Ga0209758_1000297
461 Ga0209758_1024233
462 Ga0209050_1000002
463 Ga0209050_1000228
464 Ga0209050_1000270
465 Ga0209050_1001361
466 Ga0209050_1002585
467 Ga0209050_1004325
468 Ga0209050_1008363
469 Ga0209256_1000030
470 Ga0209256_1000047
471 Ga0209256_1000075
472 Ga0209256_1000238
473 Ga0209256_1000614
474 Ga0207426_1000194
475 Ga0207426_1000294
476 Ga0209051_1000002
477 Ga0209051_1000004
478 Ga0209051_1000128
479 Ga0209051_1000869
480 Ga0209051_1002371
481 Ga0209051_1003219
482 Ga0209051_1019531
483 Ga0209257_1000002
484 Ga0209257_1000033
485 Ga0209257_1000162
486 Ga0209257_1000423
487 Ga0209257_1001472
488 Ga0209257_1003015
489 Ga0209257_1007164
490 Ga0207710_10000471
491 Ga0207706_10001032
492 Ga0207709_10000587
493 Ga0207709_10012331
494 Ga0207703_10014361
495 Ga0207639_10050300
496 Ga0209281_1000084
497 Ga0268265_10053295
498 Ga0268264_10010370
499 Ga0307517_10002271
500 Ga0307515_10008063
501 Ga0307513_10047112
502 Ga0307513_10060042
503 Ga0307513_10137156
504 Ga0307408_100001479
505 Ga0307508_10008944
506 Ga0307514_10094196
507 Ga0307405_10007381
508 Ga0307405_10036652
509 Ga0307406_10005909
510 Ga0307412_10005228
511 Ga0307412_10029732
512 Ga0307416_100029768
513 Ga0307416_100063775
514 Ga0373931_0002028
515 Ga0395905_0013052
516 Ga0495617_000876
517 Ga0495627_036183
518 Ga0495590_0000019
519 Ga0495638_0000115
520 Ga0495653_0075503
521 Ga0495650_0000921
522 Ga0495585_0060876
523 Ga0495607_0000009
524 Ga0495583_0000126
525 Ga0495606_0000583
526 Ga0495606_0083801
527 Ga0495610_0047831
528 Ga0495616_0001600
529 Ga0495620_0006001
530 Ga0495631_0000007
531 Ga0495632_0008997
532 Ga0495637_0001529
533 Ga0495637_0021817
534 Ga0495643_0000130
535 Ga0495643_0079089
536 Ga0495648_0000004
537 Ga0495654_0004606
538 Ga0495597_0000143
539 Ga0495622_0000142
540 Ga0495633_0000146
541 Ga0495668_0000808
542 Ga0495625_0000369
543 Ga0495625_0003291
544 Ga0495625_0016904
545 Ga0495670_0020612
546 Ga0495671_0003272
547 Ga0495589_0000033
548 Ga0495660_0006121
549 Ga0495676_0000324
550 Ga0495687_000017
551 Ga0495687_004283
552 Ga0495687_004307
553 Ga0495677_0017343
554 Ga0495686_0052047
555 Ga0495593_0000712
556 Ga0496101_0002437
557 Ga0496101_0043215
558 Ga0496102_0024705
559 Ga0496102_0060062
560 Ga0496112_0290439
561 Ga0496114_0004364
562 Ga0496117_0019997
563 Ga0496117_0062551
564 Ga0496117_0101990
565 Ga0496118_0015690
566 Ga0496121_0099819
567 Ga0496122_0043001
568 Ga0496123_0005675
569 Ga0496123_0040447
570 Ga0496124_0013232
571 Ga0496125_0086406
572 Ga0496125_0100118
573 Ga0495678_012116
574 Ga0495678_015143
575 nmdc:mga03683_424_c1
576 nmdc:mga0k408_5694_c1
577 nmdc:mga07m45_2553_c1
578 nmdc:mga07m45_4478_c1
579 nmdc:mga07m45_53010_c1
580 nmdc:mga0sz30_51447_c1
581 Ga0500610_0002208
582 Ga0500610_0003654
583 Ga0500578_0000122
584 Ga0500643_007781
585 Ga0500651_0000044
586 Ga0500566_0029625
587 Ga0500571_000243
588 Ga0500592_002075
589 Ga0500593_000446
590 Ga0500593_000874
591 Ga0500593_012708
592 Ga0500607_000680
593 Ga0500607_005281
594 Ga0500607_009343
595 Ga0500607_010026
596 Ga0500642_0036039
597 Ga0500652_001169
598 Ga0500655_000060
599 Ga0500658_0000028
600 Ga0500658_0000094
601 Ga0500559_0001732
602 Ga0500559_0042354
603 Ga0500564_004778
604 Ga0500568_0016430
605 Ga0500616_0018090
606 Ga0500619_000218
607 Ga0500622_0001331
608 Ga0500622_0031834
609 Ga0500627_0005947
610 Ga0500638_003556
611 Ga0500636_0006895
612 2587726402
613 2587731797
614 2587755393
615 2588292315
616 2599624782
617 2599625245
618 2599672794
619 2599673303
620 2599682756
621 2599682973
622 2599694403
623 2599694911
624 2643970809
625 2644138918
626 2644273851
627 2644329518
628 2644464260
629 2738718874
630 2738878833
631 2738881233
632 2739280892
633 2819600827
634 2831267424
635 2838060382
636 2857578105
637 2885198289
638 2885203493
639 2885212331
640 2885217157
641 2899931617
642 2904453872
643 2904462348
644 2904542785
645 2904544205
646 2928042997
647 2928050344
648 2928056629
649 2928068913
650 2928074823
651 2928077741
652 2928090615
653 2929162223
654 2929168034
655 2945911210
656 2945914467
657 2945986502
658 2954771814

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF00196

GerE

Bacterial regulatory proteins, luxR family

472

528

0.96

PF13487

HD_5

HD domain

281

448

0.94

Structural Annotation

Top 5 Hits

ID Description Score Start End
3clo-assembly1.cif.gz_B crystal structure of putative transcriptional regulator containing a luxr dna binding domain (np_811094.1) from bacteroides thetaiotaomicron vpi-5482 at 2.04 a resolution 0.9619 432 491
3clo-assembly2.cif.gz_C-2 crystal structure of putative transcriptional regulator containing a luxr dna binding domain (np_811094.1) from bacteroides thetaiotaomicron vpi-5482 at 2.04 a resolution 0.9556 432 491
3ulq-assembly1.cif.gz_B crystal structure of the anti-activator rapf complexed with the response regulator coma dna binding domain 0.95 432 486
1zn2-assembly1.cif.gz_A low resolution structure of response regulator styr 0.949 430 487
7x1k-assembly1.cif.gz_B crystal structure of the flagellar expression regulator degu from listeria monocytogenes 0.9411 430 490
ID Description Score Start End Superfamily
3cloA02 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.9682 432 486 1.10.10.10
3cloC02 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.9668 432 487 1.10.10.10
1yioA02 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.9635 430 487 1.10.10.10
3sztA02 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.9546 432 491 1.10.10.10
4hyeB02 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.9501 428 491 1.10.10.10
ID Description Score Start End GO Terms
AF-A0A7C6TD58-F1-model_v4 HD domain-containing protein 0.9415 259 413 GO:0016787
AF-A0A2U3D9P0-F1-model_v4 HD-GYP domain-containing protein 0.9388 254 410
AF-A0A660RCE0-F1-model_v4 Uncharacterized protein 0.9371 237 413 GO:0004112
GO:0009214
AF-A0A357B6U1-F1-model_v4 PAS domain S-box protein 0.9353 237 413 GO:0006355
GO:0016020
AF-A0A7Y8HU27-F1-model_v4 PAS domain S-box protein 0.9333 238 413 GO:0006355

Map