F410029

General Info

Members Datasets Scaffolds Average Seq Length
330 270 658 447

Family's Representative Sequence

Representative Sequence 3300006051|Ga0075364_10026008|Ga0075364_100260081
Length 499
Sequence MTEYQNPSSPLASIPDANPASSLSALASEPARDARSGRVILVDDDEHIRHATSQTLLLRGIPVQTFANANQAVEQLSDAFDGIVISDIRMPGLDGIQFFAKIRAIDPDIPVILITGHGDVETAVQAMHDGAYDFLSKPFSAERLWRSVQRAIEKRQLMLENRRLHAHLQNNEASDILVGTSPGIQKIRKAIANLADANVDILIQGETGAGKDVAARALHESSRRRSRPFVAINCGALPESVIESELFGHEAGAFTGAQKRRVGRIEHASGGTLFLDEIESMPLALQVKLLRVLETRKVTPLGTNEERDLDLRVVAATKEDLGSEKARAFFRQDLYYRLNVVTLKLPALRDRPEDIATLFARFVDGAAKRFNRIPPTIDLDVLKYLRSQAWPGNVRELLHYAERFVLGVAEWDIDEGGASTPASTTGDERVDTQGLPAIAGDDAQNLPSRMEQIEAEIIRRTLKANQGDIKATLAALKIPRKTFYDKLQRHNISRSEYLS

Samples

Sample ID Description Type Environment
1 3300006051 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 Metagenome Endosphere
2 3300002987 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mLB Metagenome Endosphere
3 3300003187 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mLB Metagenome Endosphere
4 3300003354 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMS Metagenome Endosphere
5 3300003374 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMF Metagenome Endosphere
6 3300003763 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mCL_r2 Metagenome Endosphere
7 3300003771 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMF_r2 Metagenome Endosphere
8 3300003775 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mCL_r2 Metagenome Endosphere
9 3300003781 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mLB_r2 Metagenome Endosphere
10 3300003784 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mLB_r2 Metagenome Endosphere
11 3300003794 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 Metagenome Endosphere
12 3300004625 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mMF_r2 Metagenome Endosphere
13 3300005262 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMF (version 2) (version 3) Metagenome Endosphere
14 3300005435 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG Metagenome Rhizosphere
15 3300005436 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG Metagenome Rhizosphere
16 3300005439 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG Metagenome Rhizosphere
17 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
18 3300006028 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG Metagenome Rhizosphere
19 3300006038 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 Metagenome Endosphere
20 3300006042 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-3 Metagenome Endosphere
21 3300006177 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-2 Metagenome Endosphere
22 3300006871 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 Metagenome Rhizosphere
23 3300006948 Root nodule microbial communities of legume samples collected from California, USA - M. trunc garden sep15 Metagenome Nodule
24 3300009148 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG Metagenome Rhizosphere
25 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
26 3300013100 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6-5 metaG Metagenome Rhizosphere
27 3300013102 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG Metagenome Rhizosphere
28 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
29 3300013249 Rizhosphere microbial communities from mature sugarcane plants Campinas, Sao Paulo, Brazil - 001.3_F06 Metagenome Rhizosphere
30 3300013250 Rizhosphere microbial communities from mature sugarcane plants Campinas, Sao Paulo, Brazil - 001.1_C05 Metagenome Rhizosphere
31 3300015690 Rizhosphere microbial communities from mature sugarcane plants Campinas, Sao Paulo, Brazil - 001.1_D05 Metagenome Rhizosphere
32 3300025208 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mTSA (SPAdes) (version 2) Metagenome Endosphere
33 3300025228 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mMS_r2 (SPAdes) (version 2) Metagenome Endosphere
34 3300025272 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
35 3300025273 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMS_r2 (SPAdes) (version 3) Metagenome Endosphere
36 3300025284 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mLB (SPAdes) (version 2) Metagenome Endosphere
37 3300025291 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mLB_r2 (SPAdes) (version 3) Metagenome Endosphere
38 3300025292 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mLB_r2 (SPAdes) (version 2) Metagenome Endosphere
39 3300025294 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mLB (SPAdes) (version 2) Metagenome Endosphere
40 3300025295 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMF_r2 (SPAdes) (version 3) Metagenome Endosphere
41 3300025298 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 (SPAdes) (version 2) Metagenome Endosphere
42 3300025299 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mCL_r2 (SPAdes) (version 3) Metagenome Endosphere
43 3300025302 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMS (SPAdes) (version 2) Metagenome Endosphere
44 3300025303 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mMS_r2 (SPAdes) (version 2) Metagenome Endosphere
45 3300025304 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
46 3300025928 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
47 3300025929 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
48 3300025933 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
49 3300025972 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
50 3300026067 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
51 3300027312 Agave microbial communities from Guanajuato, Mexico - At.Am.rz (SPAdes) (version 2) Metagenome Rhizosphere
52 3300027395 Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M2 PM (SPAdes) (version 2) Metagenome Rhizosphere
53 3300027666 Root nodule microbial communities of legume samples collected from California, USA - M. trunc garden sep15 (SPAdes) (version 2) Metagenome Nodule
54 3300027682 Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M3 S AM (SPAdes) (version 2) Metagenome Rhizosphere
55 3300027866 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-3 (SPAdes) (version 2) Metagenome Endosphere
56 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
57 3300028786 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 23_EM Metagenome Unclassified
58 3300028794 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM Metagenome Unclassified
59 3300030500 Agave microbial communities from Guanajuato, Mexico - At.Am.rz (v2) (version 3) Metagenome Rhizosphere
60 3300031238 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-26 metaG Metagenome Rhizosphere
61 3300031241 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-14-20 metaG Metagenome Rhizosphere
62 3300031507 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 10_EM Metagenome Unclassified
63 3300031730 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 19_EM Metagenome Unclassified
64 3300033180 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 12_EM Metagenome Unclassified
65 3300035086 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_4 Metagenome Rhizosphere
66 3300035111 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_11 Metagenome Rhizosphere
67 3300035118 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_N_2 Metagenome Rhizosphere
68 3300035692 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_11 Metagenome Rhizosphere
69 3300035695 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_19 Metagenome Rhizosphere
70 3300035725 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_8 Metagenome Rhizosphere
71 3300036401 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_16 Metagenome Rhizosphere
72 3300037068 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_16 Metagenome Rhizosphere
73 3300039437 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 v2 Metagenome Unclassified
74 3300041404 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0216DE14Z070717_5272 Metagenome Rhizosphere
75 3300041451 Perennial ryegrass root microbial community from Lincoln, Canterbury, New Zealand - RGR17_3 MetaG Metagenome Rhizoplane
76 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
77 3300046455 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-307-CL1_26_33 rhizosphere Metagenome Rhizosphere
78 3300046472 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL1_35_33 rhizosphere Metagenome Rhizosphere
79 3300046492 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co3_21_57 rhizosphere Metagenome Rhizosphere
80 3300046507 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co2_62_14 rhizosphere Metagenome Rhizosphere
81 3300046517 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-470-CL2_38_23 rhizosphere Metagenome Rhizosphere
82 3300046522 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 rhizosphere Metagenome Rhizosphere
83 3300046528 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co1_24_3 rhizosphere Metagenome Rhizosphere
84 3300046530 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-866-Co1_10_5 rhizosphere Metagenome Rhizosphere
85 3300046538 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co1_12_7 rhizosphere Metagenome Rhizosphere
86 3300046542 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co2_52_27 rhizosphere Metagenome Rhizosphere
87 3300046615 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-866-Co3_27_48 rhizosphere Metagenome Rhizosphere
88 3300046616 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co1_14_4 rhizosphere Metagenome Rhizosphere
89 3300046648 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co3_15_40 rhizosphere Metagenome Rhizosphere
90 3300046660 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co1_32_7 rhizosphere Metagenome Rhizosphere
91 3300046665 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co3_16_51 rhizosphere Metagenome Rhizosphere
92 3300046674 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL3_93_10 rhizosphere Metagenome Rhizosphere
93 3300046694 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 rhizosphere Metagenome Rhizosphere
94 3300046794 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-133-Co1_27_3 rhizosphere Metagenome Rhizosphere
95 3300047443 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co3_24_32 rhizosphere Metagenome Rhizosphere
96 3300047447 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co1_7_5 rhizosphere Metagenome Rhizosphere
97 3300047469 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co3_31_39 rhizosphere Metagenome Rhizosphere
98 3300047470 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWA-24-3-Co1_3_5 rhizosphere Metagenome Rhizosphere
99 3300047471 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - SKWD-24-1-CL2_58_25 rhizosphere Metagenome Rhizosphere
100 3300048917 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6c N15 Metagenome Rhizoplane
101 3300048918 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6d N15 Metagenome Rhizoplane
102 3300048919 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_7x unlabeled Metagenome Unclassified
103 3300048920 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1e N15 Metagenome Unclassified
104 3300048921 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1f N15 Metagenome Unclassified
105 3300048922 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2e N15 Metagenome Unclassified
106 3300048923 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2f N15 Metagenome Unclassified
107 3300048924 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_3e N15 Metagenome Unclassified
108 3300048925 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8x unlabeled Metagenome Unclassified
109 3300048926 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8y unlabeled Metagenome Unclassified
110 3300048927 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_4e N15 Metagenome Unclassified
111 3300048928 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_5e N15 Metagenome Unclassified
112 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
113 3300049460 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWA-24-3-Co2_41_10 rhizosphere Metagenome Rhizosphere
114 3300049763 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - C11_A_4_control Metagenome Rhizosphere
115 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
116 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
117 3300050491 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 re-annotation Metagenome Endosphere
118 3300050494 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 re-annotation Metagenome Endosphere
119 3300050495 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-3 re-annotation Metagenome Endosphere
120 3300050516 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-4 re-annotation Metagenome Endosphere
121 3300053084 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-234-CL2_65_22 rhizosphere Metagenome Rhizosphere
122 3300053104 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co2_41_23 endosphere Metagenome Endosphere
123 3300053111 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-258-CL2_67_23 endosphere Metagenome Endosphere
124 3300053137 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-133-Co1_27_3 endosphere Metagenome Endosphere
125 3300053157 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-86-CL2_69_17 endosphere Metagenome Endosphere
126 3300053161 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co3_16_51 endosphere Metagenome Endosphere
127 3300053177 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL1_23_5 endosphere Metagenome Endosphere
128 3300053730 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co2_68_28 endosphere Metagenome Endosphere
129 2511231027 Phyllobacterium sp. YR531 Isolate Rhizosphere
130 2512047086 Sinorhizobium arboris LMG 14919 Isolate Nodule
131 2516143018 Ensifer sp. BR816 Isolate Nodule
132 2537561587 Agrobacterium tumefaciens Cherry 2E-2-2 Isolate Rhizosphere
133 2545555834 Methylobacterium sp. WSM2598 Isolate Nodule
134 2554235003 Agrobacterium tumefaciens WRT31 Isolate Rhizosphere
135 2558860242 Agrobacterium fabacearum P4 Isolate Rhizosphere
136 2597490356 Azospirillum brasilense sp7 Isolate Unclassified
137 2599185156 Rhizobium sp. NFR03 Isolate Rhizoplane
138 2599185210 Rhizobium sp. NFACC06-2 Isolate Rhizoplane
139 2599185352 Sinorhizobium sp. NFACC03 Isolate Rhizoplane
140 2600255279 Rhizobium sp. NFIX01 Isolate Rhizoplane
141 2600255308 Rhizobium sp. NFIX02 Isolate Rhizoplane
142 2643221558 Rhizobium sp. Root149 Isolate Unclassified
143 2643221568 Rhizobium sp. Root564 Isolate Unclassified
144 2643221582 Rhizobium sp. Root651 Isolate Unclassified
145 2643221693 Rhizobium sp. Root491 Isolate Unclassified
146 2643221723 Ensifer sp. Root278 Isolate Unclassified
147 2643221734 Bosea sp. Root670 Isolate Unclassified
148 2643221736 Bosea sp. Root483D1 Isolate Unclassified
149 2718217882 Rhizobium sp. N741 Isolate Nodule
150 2718217997 Rhizobium phaseoli sv. phaseoli R723 Isolate Nodule
151 2718218009 Rhizobium sp. N561 Isolate Nodule
152 2718218199 Rhizobium phaseoli sv. phaseoli N261 Isolate Nodule
153 2718218232 Rhizobium phaseoli sv. phaseoli N161 Isolate Nodule
154 2718218233 Rhizobium phaseoli sv. phaseoli R744 Isolate Nodule
155 2718218235 Rhizobium phaseoli sv. phaseoli R620 Isolate Nodule
156 2718218269 Rhizobium phaseoli sv. phaseoli N671 Isolate Nodule
157 2718218363 Rhizobium sp. N113 Isolate Nodule
158 2718218365 Rhizobium sp. N731 Isolate Nodule
159 2718218366 Rhizobium sp. N621 Isolate Nodule
160 2721755514 Rhizobium sp. N6212 Isolate Nodule
161 2721755556 Rhizobium phaseoli sv. phaseoli N931 Isolate Nodule
162 2721755684 Rhizobium phaseoli sv. phaseoli N841 Isolate Nodule
163 2721755685 Rhizobium phaseoli sv. phaseoli R611 Isolate Nodule
164 2721755810 Rhizobium sp. N871 Isolate Nodule
165 2721755819 Rhizobium phaseoli sv. phaseoli N771 Isolate Nodule
166 2721755822 Rhizobium phaseoli sv. phaseoli R650 Isolate Nodule
167 2721755823 Rhizobium phaseoli sv. phaseoli R630 Isolate Nodule
168 2728369352 Rhizobium phaseoli sv. phaseoli N831 Isolate Nodule
169 2728369365 Rhizobium sp. N1341 Isolate Nodule
170 2728369397 Rhizobium sp. N1314 Isolate Nodule
171 2751185800 Brucella pituitosa AA2 Isolate Unclassified
172 2758568016 [Ochrobactrum] quorumnocens A44 Isolate Rhizosphere
173 2791355256 Rhizobium sp. M10 Isolate Nodule
174 2791355262 Rhizobium sp. M1 Isolate Nodule
175 2791355263 Rhizobium chutanense C5 Isolate Nodule
176 2791355265 Rhizobium sp. H4 Isolate Nodule
177 2802429605 Rhizobium sophoriradicis L101 Isolate Nodule
178 2802429606 Rhizobium sophoriradicis JJW1 Isolate Nodule
179 2808606387 Rhizobium sp. SJZ105 Isolate Rhizosphere
180 2818991439 Agrobacterium tumefaciens 1187 Isolate Unclassified
181 2818991467 Bosea vestrisii 3192 Isolate Unclassified
182 2834641062 Cupriavidus gilardii JZ4 Isolate Unclassified
183 2838016132 Rhizobium phaseoli SEMIA 4071 Isolate Nodule
184 2838048938 Rhizobium pisi 27/80 Isolate Nodule
185 2838061910 Rhizobium phaseoli L15 Isolate Nodule
186 2838068647 Rhizobium esperanzae VC28 Isolate Nodule
187 2838675328 Agrobacterium radiobacter SEMIA 410 Isolate Nodule
188 2838714209 Agrobacterium radiobacter SEMIA 435 Isolate Nodule
189 2838719591 Agrobacterium radiobacter SEMIA 436 Isolate Nodule
190 2838724970 Agrobacterium radiobacter SEMIA 437 Isolate Nodule
191 2840764183 Phyllobacterium sophorae CCBAU 03422 Isolate Unclassified
192 2841846520 Agrobacterium radiobacter SEMIA 440 Isolate Nodule
193 2841859092 Agrobacterium radiobacter SEMIA 4026 Isolate Nodule
194 2842124991 Agrobacterium radiobacter SEMIA 434 Isolate Nodule
195 2842130223 Agrobacterium radiobacter SEMIA 441 Isolate Nodule
196 2842152218 Agrobacterium radiobacter SEMIA 457 Isolate Nodule
197 2842170452 Agrobacterium radiobacter SEMIA 461 Isolate Nodule
198 2842175837 Agrobacterium radiobacter SEMIA 462 Isolate Nodule
199 2842187318 Agrobacterium radiobacter SEMIA 464 Isolate Nodule
200 2842192696 Rhizobium esperanzae SEMIA 468 Isolate Nodule
201 2842205361 Rhizobium etli SEMIA 471 Isolate Nodule
202 2842211629 Agrobacterium radiobacter SEMIA 472 Isolate Nodule
203 2842224351 Agrobacterium radiobacter SEMIA 480 Isolate Nodule
204 2842264693 Rhizobium phaseoli SEMIA 487 Isolate Nodule
205 2842278818 Rhizobium etli SEMIA 489 Isolate Nodule
206 2842311132 Rhizobium phaseoli SEMIA 4002 Isolate Nodule
207 2842422224 Rhizobium esperanzae SEMIA 4042 Isolate Nodule
208 2842428310 Rhizobium phaseoli SEMIA 4050 Isolate Nodule
209 2842434925 Rhizobium esperanzae SEMIA 4051 Isolate Nodule
210 2842441272 Rhizobium esperanzae SEMIA 4053 Isolate Nodule
211 2842447887 Rhizobium esperanzae SEMIA 4055 Isolate Nodule
212 2842462802 Rhizobium phaseoli SEMIA 4057 Isolate Nodule
213 2842469257 Rhizobium phaseoli SEMIA 4058 Isolate Nodule
214 2842515876 Agrobacterium radiobacter SEMIA 4072 Isolate Nodule
215 2842694124 Methylopila sp. R-72369 Isolate Unclassified
216 2842775625 Roseomonas sp. R-71825 Isolate Unclassified
217 2842871566 Phyllobacterium sp. R-73111 Isolate Unclassified
218 2846952575 Azospirillum brasilense sp7 Isolate Unclassified
219 2848858292 Azospirillum brasilense Az39 Isolate Unclassified
220 2894817345 Aureimonas psammosilenae YIM DR1026 Isolate Unclassified
221 2897803580 Azospirillum doebereinerae GSF71 Isolate Unclassified
222 2899792073 Agrobacterium deltaense CNPSo 3391 Isolate Nodule
223 2899845264 Agrobacterium fabacearum CNPSo 675 Isolate Unclassified
224 2915650412 Ochrobactrum sp. CM-21-5 Isolate Rhizosphere
225 2917699015 Bosea sp. F3-2 Isolate Rhizosphere
226 2919114240 Agrobacterium tumefaciens 1457 Isolate Rhizosphere
227 2919166419 Agrobacterium cavarae 2074 Isolate Unclassified
228 2920822456 Ensifer sesbaniae CCBAU 65729 Isolate Unclassified
229 2926754445 Agrobacterium radiobacter SLBN-94 Isolate Rhizosphere
230 2926760298 Agrobacterium tumefaciens SLBN-170 Isolate Rhizosphere
231 2928521798 Phyllobacterium ifriqiyense 1451 Isolate Rhizosphere
232 2929138655 Agrobacterium sp. R-72433 Hybrid assembly Isolate Unclassified
233 2933006813 Rhizobium sp. SEMIA 439 Isolate Unclassified
234 2933011516 Rhizobium sp. SEMIA 4032 Isolate Unclassified
235 2933594066 Agrobacterium fabrum 35/80 Isolate Nodule
236 2933599457 Rhizobium phaseoli M3 Isolate Nodule
237 2936381700 Rhizobium chutanense C16 Isolate Unclassified
238 2954011201 Phyllobacterium ifrigiyense W4I11 Isolate Rhizosphere
239 2978969890 Agrobacterium sp. SORGH_AS 787 Isolate Unclassified
240 2979089926 Agrobacterium sp. SORGH_AS 745 Isolate Unclassified
241 2979095461 Agrobacterium tumefaciens SORGH_AS 749 Isolate Unclassified
242 2979100975 Agrobacterium pusense SORGH_AS 755 Isolate Unclassified
243 2984509177 Agrobacterium pusense SORGH_AS260 Isolate Aerial Root
244 2984518228 Agrobacterium pusense SORGH_AS285 Isolate Aerial Root
245 2984537506 Agrobacterium sp. SORGH_AS440 Isolate Aerial Root
246 2984587000 Agrobacterium larrymoorei SORGH_AS974 Isolate Aerial Root
247 2984601300 Rhizobium pusense SORGH_AS1083 Isolate Aerial Root
248 2989349275 Shinella kummerowiae CCBAU 25048 Isolate Unclassified
249 2996893221 Rhizobium sp. R635 Isolate Nodule
250 3003665799 Methylobacterium aquaticum BG2 Isolate Unclassified
251 641522639 Methylobacterium sp. 4-46 Isolate Nodule
252 650716007 Agrobacterium fabacearum H13-3 Isolate Rhizosphere
253 8001845381 Ancylobacter sonchi VKM B-3145 Isolate Unclassified
254 8003400568 Cupriavidus gilardii USM5 Isolate Rhizosphere
255 8003570095 Agrobacterium rhizogenes GBBC3284 Isolate Unclassified
256 8005282627 Rhizobium phaseoli NC1 Isolate Nodule
257 8005289223 Rhizobium bangladeshense 1002 Isolate Nodule
258 8005301065 Rhizobium bangladeshense 1017 Isolate Nodule
259 8005430974 Rhizobium phaseoli Y20 Isolate Nodule
260 8005497431 Rhizobium phaseoli CCGM8 Isolate Unclassified
261 8005619151 Rhizobium phaseoli CCGM2 Isolate Unclassified
262 8005626139 Rhizobium phaseoli Y18 Isolate Nodule
263 8005668836 Rhizobium phaseoli CCGM9 Isolate Unclassified
264 8005688590 Rhizobium bangladeshense 1024 Isolate Nodule
265 8016583857 Bradyrhizobium sp. LM2.7 Isolate Nodule
266 8018150411 Rhizobium straminoryzae SM12 Isolate Rhizosphere
267 8024501048 Rhizobium sp. H4 Isolate Nodule
268 8054460903 Agrobacterium vaccinii B7.6 Isolate Unclassified
269 8055693939 Hafnia alvei A23BA Isolate Rhizosphere
270 8056382006 Rhizobium croatiense 13T Isolate Nodule

Type Distribution

Type Percentage (%)
Metagenomes 55.76
Metatranscriptomes 0
Isolates 44.24

Biome Distribution

Category Percentage (%)
Aerial Root 1.52
Bulb 0
Endosphere 18.18
Nodule 24.85
Rhizoplane 2.42
Rhizosphere 27.88
Stem 0
Stem Tuber 0
Unclassified 0

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0075364_10026008 3300006051 Bacteria 3730
2 JGI25159J45721_1000041 3300002987 Bacteria 66706
3 JGI25151J46595_10000056 3300003187 Bacteria 151555
4 JGI25151J46595_10006640 3300003187 Bacteria 5772
5 JGI25151J46595_10028472 3300003187 Bacteria 2225
6 JGI25160J50197_1000133 3300003354 Bacteria 66706
7 JGI25161J50226_1000417 3300003374 Bacteria 20459
8 Ga0055529_1001353 3300003763 Bacteria 8062
9 Ga0055526_1000477 3300003771 Bacteria 31828
10 Ga0055526_1001720 3300003771 Bacteria 15233
11 Ga0055524_1000089 3300003775 Bacteria 115137
12 Ga0055536_1000814 3300003781 Bacteria 20612
13 Ga0055534_1010548 3300003784 Bacteria 1929
14 Ga0055531_10023305 3300003794 Bacteria 2327
15 Ga0055543_1000119 3300004625 Bacteria 66744
16 Ga0065165_1000423 3300005262 Bacteria 66744
17 Ga0065165_1002182 3300005262 Bacteria 17628
18 Ga0070714_100000869 3300005435 Bacteria 21410
19 Ga0070713_100001989 3300005436 Bacteria 13193
20 Ga0070711_100006887 3300005439 Bacteria 6888
21 Ga0070665_100031342 3300005548 Bacteria 5351
22 Ga0070717_10007472 3300006028 Bacteria 8114
23 Ga0075365_10096726 3300006038 Bacteria 2018
24 Ga0075368_10001658 3300006042 Bacteria 7147
25 Ga0075364_10005060 3300006051 Bacteria 7645
26 Ga0075362_10004431 3300006177 Bacteria 5045
27 Ga0075434_100042718 3300006871 Bacteria 4495
28 Ga0099826_10000154 3300006948 Bacteria 28638
29 Ga0099826_10008140 3300006948 Bacteria 7778
30 Ga0105243_10030242 3300009148 Bacteria 4167
31 Ga0105239_10032497 3300010375 Bacteria 5733
32 Ga0157373_10042568 3300013100 Bacteria 3245
33 Ga0157371_10000002 3300013102 Bacteria 665040
34 Ga0157371_10010497 3300013102 Bacteria 7205
35 Ga0157370_10002341 3300013104 Bacteria 22886
36 Ga0171463_1002 3300013249 Bacteria 1274851
37 Ga0171462_1008 3300013250 Bacteria 384318
38 Ga0183363_1046 3300015690 Bacteria 40582
39 Ga0209436_100119 3300025208 Bacteria 38789
40 Ga0209672_104299 3300025228 Bacteria 2676
41 Ga0209455_1000664 3300025272 Bacteria 20829
42 Ga0209673_1004683 3300025273 Bacteria 7217
43 Ga0209130_1000257 3300025284 Bacteria 66804
44 Ga0209675_1000344 3300025291 Bacteria 40566
45 Ga0209676_1000680 3300025292 Bacteria 48191
46 Ga0209025_1000016 3300025294 Bacteria 770739
47 Ga0209025_1000301 3300025294 Bacteria 110450
48 Ga0209025_1001615 3300025294 Bacteria 28188
49 Ga0209025_1002415 3300025294 Bacteria 19872
50 Ga0209564_1000035 3300025295 Bacteria 442446
51 Ga0209564_1000449 3300025295 Bacteria 70234
52 Ga0209050_1001687 3300025298 Bacteria 22155
53 Ga0209256_1000025 3300025299 Bacteria 442449
54 Ga0209256_1000244 3300025299 Bacteria 96646
55 Ga0209256_1000657 3300025299 Bacteria 46936
56 Ga0207426_1000413 3300025302 Bacteria 70783
57 Ga0209051_1001857 3300025303 Bacteria 16630
58 Ga0209051_1003606 3300025303 Bacteria 10057
59 Ga0209257_1003066 3300025304 Bacteria 15057
60 Ga0207700_10011245 3300025928 Bacteria 5699
61 Ga0207664_10037372 3300025929 Bacteria 3757
62 Ga0207706_10028973 3300025933 Bacteria 4943
63 Ga0207668_10014515 3300025972 Bacteria 4878
64 Ga0207678_10269564 3300026067 Bacteria 1460
65 Ga0209371_1000012 3300027312 Bacteria 748304
66 Ga0209371_1000758 3300027312 Bacteria 26911
67 Ga0209996_1001670 3300027395 Bacteria 2704
68 Ga0209282_1000255 3300027666 Bacteria 26849
69 Ga0209971_1002382 3300027682 Bacteria 4539
70 Ga0209813_10007897 3300027866 Bacteria 2668
71 Ga0209813_10010393 3300027866 Bacteria 2406
72 Ga0268266_10132823 3300028379 Bacteria 2228
73 Ga0307517_10000042 3300028786 Bacteria 166943
74 Ga0307515_10002178 3300028794 Bacteria 43027
75 Ga0307515_10047208 3300028794 Bacteria 6554
76 Ga0268256_1000013 3300030500 Bacteria 752103
77 Ga0268256_1012747 3300030500 Bacteria 2581
78 Ga0265332_10064139 3300031238 Bacteria 1569
79 Ga0265325_10015858 3300031241 Bacteria 4226
80 Ga0307509_10037845 3300031507 Bacteria 5270
81 Ga0307516_10091267 3300031730 Bacteria 2874
82 Ga0307510_10002369 3300033180 Bacteria 21339
83 Ga0373934_0002900 3300035086 Bacteria 6274
84 Ga0373923_0002480 3300035111 Bacteria 5697
85 Ga0373954_0001968 3300035118 Bacteria 8523
86 Ga0373935_0004018 3300035692 Bacteria 8598
87 Ga0373927_0001332 3300035695 Bacteria 18620
88 Ga0373927_0044336 3300035695 Bacteria 2878
89 Ga0373927_0169227 3300035695 Bacteria 1432
90 Ga0373947_0065352 3300035725 Bacteria 2219
91 Ga0373937_0015034 3300036401 Bacteria 6837
92 Ga0373937_0017142 3300036401 Bacteria 6445
93 Ga0373925_0024242 3300037068 Bacteria 4429
94 Ga0436365_0319496 3300039437 Bacteria 8196
95 Ga0439436_0027186 3300041404 Bacteria 1675
96 Ga0451791_1523771 3300041451 Bacteria 1795
97 Ga0451576_0029017 3300045051 Bacteria 5923
98 Ga0451576_0459088 3300045051 Bacteria 1337
99 Ga0495603_0001748 3300046455 Bacteria 12804
100 Ga0495580_0013528 3300046472 Bacteria 6222
101 Ga0495585_0002109 3300046492 Bacteria 14544
102 Ga0495606_0022634 3300046507 Bacteria 4572
103 Ga0495630_0258899 3300046517 Bacteria 1329
104 Ga0495643_0021885 3300046522 Bacteria 3658
105 Ga0495643_0057954 3300046522 Bacteria 2062
106 Ga0495642_0004386 3300046528 Bacteria 5477
107 Ga0495654_0000757 3300046530 Bacteria 25005
108 Ga0495654_0037150 3300046530 Bacteria 2445
109 Ga0495609_0029334 3300046538 Bacteria 2505
110 Ga0495597_0011643 3300046542 Bacteria 4261
111 Ga0495656_0005366 3300046615 Bacteria 4420
112 Ga0495668_0037559 3300046616 Bacteria 2710
113 Ga0495611_0014010 3300046648 Bacteria 3421
114 Ga0495625_0169873 3300046660 Bacteria 1456
115 Ga0495661_0008776 3300046665 Bacteria 6976
116 Ga0495588_0002491 3300046674 Bacteria 7890
117 Ga0495649_0009389 3300046694 Bacteria 5821
118 Ga0495589_0028792 3300046794 Bacteria 2802
119 Ga0495687_006103 3300047443 Bacteria 7483
120 Ga0495687_009335 3300047443 Bacteria 5493
121 Ga0495685_013256 3300047447 Bacteria 2797
122 Ga0495673_0039465 3300047469 Bacteria 2141
123 Ga0495681_0019491 3300047470 Bacteria 3703
124 Ga0495684_0056297 3300047471 Bacteria 2998
125 Ga0496114_0032246 3300048917 Bacteria 4311
126 Ga0496115_0008956 3300048918 Bacteria 7424
127 Ga0496116_0000026 3300048919 Bacteria 450803
128 Ga0496116_0044069 3300048919 Bacteria 3033
129 Ga0496116_0112260 3300048919 Bacteria 1598
130 Ga0496117_0000016 3300048920 Bacteria 523642
131 Ga0496117_0022362 3300048920 Bacteria 5074
132 Ga0496117_0025656 3300048920 Bacteria 4629
133 Ga0496117_0042028 3300048920 Bacteria 3341
134 Ga0496118_0000643 3300048921 Bacteria 57227
135 Ga0496118_0003253 3300048921 Bacteria 20710
136 Ga0496119_0001637 3300048922 Bacteria 26393
137 Ga0496119_0008727 3300048922 Bacteria 8846
138 Ga0496119_0022687 3300048922 Bacteria 4483
139 Ga0496119_0025830 3300048922 Bacteria 4091
140 Ga0496120_0000056 3300048923 Bacteria 180367
141 Ga0496121_0000005 3300048924 Bacteria 1034486
142 Ga0496122_0000002 3300048925 Bacteria 905834
143 Ga0496122_0000106 3300048925 Bacteria 193672
144 Ga0496122_0000634 3300048925 Bacteria 71553
145 Ga0496122_0019640 3300048925 Bacteria 6160
146 Ga0496122_0063433 3300048925 Bacteria 2696
147 Ga0496123_0000002 3300048926 Bacteria 1811682
148 Ga0496123_0000022 3300048926 Bacteria 361832
149 Ga0496123_0000736 3300048926 Bacteria 53090
150 Ga0496123_0029241 3300048926 Bacteria 4063
151 Ga0496123_0050342 3300048926 Bacteria 2783
152 Ga0496123_0104554 3300048926 Bacteria 1637
153 Ga0496124_0000091 3300048927 Bacteria 189706
154 Ga0496124_0016212 3300048927 Bacteria 7099
155 Ga0496124_0017079 3300048927 Bacteria 6861
156 Ga0496124_0125423 3300048927 Bacteria 2046
157 Ga0496125_0000161 3300048928 Bacteria 150707
158 Ga0496125_0000449 3300048928 Bacteria 74908
159 Ga0496125_0047000 3300048928 Bacteria 3615
160 Ga0496126_0000069 3300048929 Bacteria 246935
161 Ga0496126_0049239 3300048929 Bacteria 3847
162 Ga0495682_0013081 3300049460 Bacteria 3164
163 Ga0501266_000180 3300049763 Bacteria 8012
164 Ga0501035_0010299 3300049822 Bacteria 8672
165 Ga0501035_0011675 3300049822 Bacteria 8141
166 Ga0501044_0001496 3300049823 Bacteria 27380
167 nmdc:mga00v17_11520_c1 3300050491 Bacteria 4861
168 nmdc:mga00v17_3_c1 3300050491 Bacteria 242367
169 nmdc:mga00v17_6974_c1 3300050491 Bacteria 6012
170 nmdc:mga06z11_33891_c1 3300050494 Bacteria 2502
171 nmdc:mga06z11_4562_c1 3300050494 Bacteria 5460
172 nmdc:mga04h51_8814_c1 3300050495 Bacteria 2712
173 nmdc:mga0sz30_247_c1 3300050516 Bacteria 20853
174 nmdc:mga0sz30_63518_c1 3300050516 Bacteria 1580
175 Ga0495595_0004695 3300053084 Bacteria 5497
176 Ga0500556_0000023 3300053104 Bacteria 168755
177 Ga0500572_002892 3300053111 Bacteria 4033
178 Ga0500561_0000204 3300053137 Bacteria 10706
179 Ga0500624_000497 3300053157 Bacteria 11507
180 Ga0500634_0009190 3300053161 Bacteria 4988
181 Ga0500636_0000001 3300053177 Bacteria 324086
182 Ga0500636_0002671 3300053177 Bacteria 9914
183 Ga0500645_008549 3300053730 Bacteria 3489
184 2511388456 2511231027 Bacteria 5013807
185 2512529859 2512047086 Bacteria 6850303
186 2516206425 2516143018 Bacteria 6951533
187 2537873231 2537561587 Bacteria 5425293
188 2545674490 2545555834 Bacteria 8130841
189 2554245603 2554235003 Bacteria 5877155
190 2559296567 2558860242 Bacteria 5568029
191 2599104189 2597490356 Bacteria 7030811
192 2599331818 2599185156 Bacteria 5403036
193 2599602939 2599185210 Bacteria 5624189
194 2600196847 2599185352 Bacteria 7228948
195 2601610548 2600255279 Bacteria 5605316
196 2601747122 2600255308 Bacteria 5611129
197 2643812312 2643221558 Bacteria 5460675
198 2643853852 2643221568 Bacteria 5187270
199 2643922327 2643221582 Bacteria 5804683
200 2644520695 2643221693 Bacteria 5513853
201 2644677354 2643221723 Bacteria 7095460
202 2644733368 2643221734 Bacteria 5365412
203 2644736004 2643221734 Bacteria 5365412
204 2644746859 2643221736 Bacteria 6608466
205 2719181918 2718217882 Bacteria 6556348
206 2719666277 2718217997 Bacteria 6740740
207 2719732635 2718218009 Bacteria 6478651
208 2720492697 2718218199 Bacteria 6740745
209 2720614167 2718218232 Bacteria 6720332
210 2720620935 2718218233 Bacteria 6662049
211 2720632259 2718218235 Bacteria 6630699
212 2720775987 2718218269 Bacteria 6906114
213 2721148009 2718218363 Bacteria 6524337
214 2721159460 2718218365 Bacteria 6274507
215 2721164845 2718218366 Bacteria 6425255
216 2722841015 2721755514 Bacteria 6424414
217 2723027585 2721755556 Bacteria 6745503
218 2723561215 2721755684 Bacteria 6859907
219 2723567837 2721755685 Bacteria 6704835
220 2724045391 2721755810 Bacteria 6479005
221 2724090594 2721755819 Bacteria 6906405
222 2724105102 2721755822 Bacteria 6726041
223 2724110930 2721755823 Bacteria 6752556
224 2730108521 2728369352 Bacteria 6745171
225 2730165153 2728369365 Bacteria 6555560
226 2730299092 2728369397 Bacteria 6274511
227 2753358213 2751185800 Bacteria 5467370
228 2758639010 2758568016 Bacteria 5645291
229 2793294316 2791355256 Bacteria 6798008
230 2793335340 2791355262 Bacteria 6774204
231 2793339386 2791355263 Bacteria 6872478
232 2793351721 2791355265 Bacteria 6539969
233 2805926951 2802429605 Bacteria 6875453
234 2805932864 2802429606 Bacteria 6346811
235 2808987019 2808606387 Bacteria 5697198
236 2819560685 2818991439 Bacteria 6907412
237 2819721971 2818991467 Bacteria 5893227
238 2834644592 2834641062 Bacteria 5559922
239 2838021575 2838016132 Bacteria 6577831
240 2838053430 2838048938 Bacteria 6044578
241 2838065552 2838061910 Bacteria 6794874
242 2838070029 2838068647 Bacteria 6208656
243 2838677832 2838675328 Bacteria 4909118
244 2838717263 2838714209 Bacteria 5525906
245 2838722128 2838719591 Bacteria 5523910
246 2838728012 2838724970 Bacteria 4908691
247 2840765678 2840764183 Bacteria 6358399
248 2841849673 2841846520 Bacteria 5345850
249 2841861291 2841859092 Bacteria 5436171
250 2842127579 2842124991 Bacteria 5346824
251 2842132725 2842130223 Bacteria 4909145
252 2842154719 2842152218 Bacteria 4908957
253 2842173217 2842170452 Bacteria 5525737
254 2842178339 2842175837 Bacteria 4908771
255 2842190370 2842187318 Bacteria 5524014
256 2842198710 2842192696 Bacteria 6147454
257 2842205665 2842205361 Bacteria 6340321
258 2842209696 2842205361 Bacteria 6340321
259 2842214684 2842211629 Bacteria 5523832
260 2842227404 2842224351 Bacteria 5524473
261 2842270840 2842264693 Bacteria 6472963
262 2842279122 2842278818 Bacteria 6340002
263 2842283150 2842278818 Bacteria 6340002
264 2842317050 2842311132 Bacteria 6616990
265 2842423643 2842422224 Bacteria 6239196
266 2842434723 2842428310 Bacteria 6767288
267 2842441081 2842434925 Bacteria 6502746
268 2842447699 2842441272 Bacteria 6769273
269 2842449432 2842447887 Bacteria 6754142
270 2842469084 2842462802 Bacteria 6588055
271 2842475628 2842469257 Bacteria 6752936
272 2842518442 2842515876 Bacteria 5436280
273 2842696602 2842694124 Bacteria 4063419
274 2842776075 2842775625 Bacteria 5587290
275 2842875435 2842871566 Bacteria 4827117
276 2846956500 2846952575 Bacteria 6587527
277 2848862749 2848858292 Bacteria 7391279
278 2894817608 2894817345 Bacteria 4892941
279 2897807458 2897803580 Bacteria 7000062
280 2899795477 2899792073 Bacteria 4926588
281 2899848362 2899845264 Bacteria 5672268
282 2915652409 2915650412 Bacteria 4288180
283 2917704081 2917699015 Bacteria 7043791
284 2919117521 2919114240 Bacteria 5700270
285 2919168327 2919166419 Bacteria 4952238
286 2920827128 2920822456 Bacteria 6897201
287 2926758966 2926754445 Bacteria 5964435
288 2926763518 2926760298 Bacteria 5505990
289 2928522943 2928521798 Bacteria 4960112
290 2929143462 2929138655 Bacteria 5810547
291 2933009899 2933006813 Bacteria 4912075
292 2933014069 2933011516 Bacteria 5439334
293 2933595855 2933594066 Bacteria 5594265
294 2933600835 2933599457 Bacteria 5858799
295 2936387504 2936381700 Bacteria 7006523
296 2954013692 2954011201 Bacteria 4762601
297 2978970948 2978969890 Bacteria 5400756
298 2979091445 2979089926 Bacteria 5670289
299 2979096966 2979095461 Bacteria 5669583
300 2979101357 2979100975 Bacteria 5423623
301 2984510691 2984509177 Bacteria 5274802
302 2984518607 2984518228 Bacteria 5277463
303 2984539041 2984537506 Bacteria 5277481
304 2984588056 2984587000 Bacteria 5263363
305 2984605736 2984601300 Bacteria 5455244
306 2989350267 2989349275 Bacteria 6349068
307 2996895030 2996893221 Bacteria 5823108
308 3003670871 3003665799 Bacteria 7279786
309 641644907 641522639 Bacteria 7737025
310 650842987 650716007 Bacteria 5573770
311 8001848612 8001845381 Bacteria 5804942
312 8003404031 8003400568 Bacteria 5535898
313 8003574300 8003570095 Bacteria 5747666
314 8005284694 8005282627 Bacteria 6675747
315 8005293453 8005289223 Bacteria 6634003
316 8005295641 8005289223 Bacteria 6634003
317 8005303250 8005301065 Bacteria 6614431
318 8005437405 8005430974 Bacteria 6689030
319 8005501018 8005497431 Bacteria 6477605
320 8005622385 8005619151 Bacteria 7030230
321 8005629885 8005626139 Bacteria 6534237
322 8005672435 8005668836 Bacteria 6953162
323 8005691977 8005688590 Bacteria 6610080
324 8016587457 8016583857 Bacteria 10421953
325 8018152069 8018150411 Bacteria 5549903
326 8024504557 8024501048 Bacteria 6427847
327 8054465288 8054460903 Bacteria 4872905
328 8055697324 8055693939 Bacteria 4772047
329 8056384297 8056382006 Bacteria 6408074
330 Ga0075364_10026008
331 JGI25159J45721_1000041
332 JGI25151J46595_10000056
333 JGI25151J46595_10006640
334 JGI25151J46595_10028472
335 JGI25160J50197_1000133
336 JGI25161J50226_1000417
337 Ga0055529_1001353
338 Ga0055526_1000477
339 Ga0055526_1001720
340 Ga0055524_1000089
341 Ga0055536_1000814
342 Ga0055534_1010548
343 Ga0055531_10023305
344 Ga0055543_1000119
345 Ga0065165_1000423
346 Ga0065165_1002182
347 Ga0070714_100000869
348 Ga0070713_100001989
349 Ga0070711_100006887
350 Ga0070665_100031342
351 Ga0070717_10007472
352 Ga0075365_10096726
353 Ga0075368_10001658
354 Ga0075364_10005060
355 Ga0075362_10004431
356 Ga0075434_100042718
357 Ga0099826_10000154
358 Ga0099826_10008140
359 Ga0105243_10030242
360 Ga0105239_10032497
361 Ga0157373_10042568
362 Ga0157371_10000002
363 Ga0157371_10010497
364 Ga0157370_10002341
365 Ga0171463_1002
366 Ga0171462_1008
367 Ga0183363_1046
368 Ga0209436_100119
369 Ga0209672_104299
370 Ga0209455_1000664
371 Ga0209673_1004683
372 Ga0209130_1000257
373 Ga0209675_1000344
374 Ga0209676_1000680
375 Ga0209025_1000016
376 Ga0209025_1000301
377 Ga0209025_1001615
378 Ga0209025_1002415
379 Ga0209564_1000035
380 Ga0209564_1000449
381 Ga0209050_1001687
382 Ga0209256_1000025
383 Ga0209256_1000244
384 Ga0209256_1000657
385 Ga0207426_1000413
386 Ga0209051_1001857
387 Ga0209051_1003606
388 Ga0209257_1003066
389 Ga0207700_10011245
390 Ga0207664_10037372
391 Ga0207706_10028973
392 Ga0207668_10014515
393 Ga0207678_10269564
394 Ga0209371_1000012
395 Ga0209371_1000758
396 Ga0209996_1001670
397 Ga0209282_1000255
398 Ga0209971_1002382
399 Ga0209813_10007897
400 Ga0209813_10010393
401 Ga0268266_10132823
402 Ga0307517_10000042
403 Ga0307515_10002178
404 Ga0307515_10047208
405 Ga0268256_1000013
406 Ga0268256_1012747
407 Ga0265332_10064139
408 Ga0265325_10015858
409 Ga0307509_10037845
410 Ga0307516_10091267
411 Ga0307510_10002369
412 Ga0373934_0002900
413 Ga0373923_0002480
414 Ga0373954_0001968
415 Ga0373935_0004018
416 Ga0373927_0001332
417 Ga0373927_0044336
418 Ga0373927_0169227
419 Ga0373947_0065352
420 Ga0373937_0015034
421 Ga0373937_0017142
422 Ga0373925_0024242
423 Ga0436365_0319496
424 Ga0439436_0027186
425 Ga0451791_1523771
426 Ga0451576_0029017
427 Ga0451576_0459088
428 Ga0495603_0001748
429 Ga0495580_0013528
430 Ga0495585_0002109
431 Ga0495606_0022634
432 Ga0495630_0258899
433 Ga0495643_0021885
434 Ga0495643_0057954
435 Ga0495642_0004386
436 Ga0495654_0000757
437 Ga0495654_0037150
438 Ga0495609_0029334
439 Ga0495597_0011643
440 Ga0495656_0005366
441 Ga0495668_0037559
442 Ga0495611_0014010
443 Ga0495625_0169873
444 Ga0495661_0008776
445 Ga0495588_0002491
446 Ga0495649_0009389
447 Ga0495589_0028792
448 Ga0495687_006103
449 Ga0495687_009335
450 Ga0495685_013256
451 Ga0495673_0039465
452 Ga0495681_0019491
453 Ga0495684_0056297
454 Ga0496114_0032246
455 Ga0496115_0008956
456 Ga0496116_0000026
457 Ga0496116_0044069
458 Ga0496116_0112260
459 Ga0496117_0000016
460 Ga0496117_0022362
461 Ga0496117_0025656
462 Ga0496117_0042028
463 Ga0496118_0000643
464 Ga0496118_0003253
465 Ga0496119_0001637
466 Ga0496119_0008727
467 Ga0496119_0022687
468 Ga0496119_0025830
469 Ga0496120_0000056
470 Ga0496121_0000005
471 Ga0496122_0000002
472 Ga0496122_0000106
473 Ga0496122_0000634
474 Ga0496122_0019640
475 Ga0496122_0063433
476 Ga0496123_0000002
477 Ga0496123_0000022
478 Ga0496123_0000736
479 Ga0496123_0029241
480 Ga0496123_0050342
481 Ga0496123_0104554
482 Ga0496124_0000091
483 Ga0496124_0016212
484 Ga0496124_0017079
485 Ga0496124_0125423
486 Ga0496125_0000161
487 Ga0496125_0000449
488 Ga0496125_0047000
489 Ga0496126_0000069
490 Ga0496126_0049239
491 Ga0495682_0013081
492 Ga0501266_000180
493 Ga0501035_0010299
494 Ga0501035_0011675
495 Ga0501044_0001496
496 nmdc:mga00v17_11520_c1
497 nmdc:mga00v17_3_c1
498 nmdc:mga00v17_6974_c1
499 nmdc:mga06z11_33891_c1
500 nmdc:mga06z11_4562_c1
501 nmdc:mga04h51_8814_c1
502 nmdc:mga0sz30_247_c1
503 nmdc:mga0sz30_63518_c1
504 Ga0495595_0004695
505 Ga0500556_0000023
506 Ga0500572_002892
507 Ga0500561_0000204
508 Ga0500624_000497
509 Ga0500634_0009190
510 Ga0500636_0000001
511 Ga0500636_0002671
512 Ga0500645_008549
513 2511388456
514 2512529859
515 2516206425
516 2537873231
517 2545674490
518 2554245603
519 2559296567
520 2599104189
521 2599331818
522 2599602939
523 2600196847
524 2601610548
525 2601747122
526 2643812312
527 2643853852
528 2643922327
529 2644520695
530 2644677354
531 2644733368
532 2644736004
533 2644746859
534 2719181918
535 2719666277
536 2719732635
537 2720492697
538 2720614167
539 2720620935
540 2720632259
541 2720775987
542 2721148009
543 2721159460
544 2721164845
545 2722841015
546 2723027585
547 2723561215
548 2723567837
549 2724045391
550 2724090594
551 2724105102
552 2724110930
553 2730108521
554 2730165153
555 2730299092
556 2753358213
557 2758639010
558 2793294316
559 2793335340
560 2793339386
561 2793351721
562 2805926951
563 2805932864
564 2808987019
565 2819560685
566 2819721971
567 2834644592
568 2838021575
569 2838053430
570 2838065552
571 2838070029
572 2838677832
573 2838717263
574 2838722128
575 2838728012
576 2840765678
577 2841849673
578 2841861291
579 2842127579
580 2842132725
581 2842154719
582 2842173217
583 2842178339
584 2842190370
585 2842198710
586 2842205665
587 2842209696
588 2842214684
589 2842227404
590 2842270840
591 2842279122
592 2842283150
593 2842317050
594 2842423643
595 2842434723
596 2842441081
597 2842447699
598 2842449432
599 2842469084
600 2842475628
601 2842518442
602 2842696602
603 2842776075
604 2842875435
605 2846956500
606 2848862749
607 2894817608
608 2897807458
609 2899795477
610 2899848362
611 2915652409
612 2917704081
613 2919117521
614 2919168327
615 2920827128
616 2926758966
617 2926763518
618 2928522943
619 2929143462
620 2933009899
621 2933014069
622 2933595855
623 2933600835
624 2936387504
625 2954013692
626 2978970948
627 2979091445
628 2979096966
629 2979101357
630 2984510691
631 2984518607
632 2984539041
633 2984588056
634 2984605736
635 2989350267
636 2996895030
637 3003670871
638 641644907
639 650842987
640 8001848612
641 8003404031
642 8003574300
643 8005284694
644 8005293453
645 8005295641
646 8005303250
647 8005437405
648 8005501018
649 8005622385
650 8005629885
651 8005672435
652 8005691977
653 8016587457
654 8018152069
655 8024504557
656 8054465288
657 8055697324
658 8056384297

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF00158

Sigma54_activat

Sigma-54 interaction domain

177

344

0.99

PF00072

Response_reg

Response regulator receiver domain

39

149

0.98

PF02954

HTH_8

Bacterial regulatory protein, Fis family

449

490

0.97

PF14532

Sigma54_activ_2

Sigma-54 interaction domain

178

348

0.88

PF07728

AAA_5

AAA domain (dynein-related subfamily)

200

338

0.76

Structural Annotation

Top 5 Hits

ID Description Score Start End
3e7l-assembly2.cif.gz_D crystal structure of sigma54 activator ntrc4's dna binding domain 0.9783 393 442
1l5y-assembly1.cif.gz_A crystal structure of mg2+ / bef3-bound receiver domain of sinorhizobium meliloti dctd 0.9731 6 133
1qkk-assembly1.cif.gz_A-2 crystal structure of the receiver domain and linker region of dctd from sinorhizobium meliloti 0.9711 6 137
4fth-assembly1.cif.gz_B crystal structure of ntrc4 dna-binding domain bound to double-stranded dna 0.9705 393 440
4fth-assembly1.cif.gz_A crystal structure of ntrc4 dna-binding domain bound to double-stranded dna 0.966 393 442
ID Description Score Start End Superfamily
3e7lD00 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Homeodomain-like 0.9783 393 442 1.10.10.60
4fthB00 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Homeodomain-like 0.9705 393 440 1.10.10.60
4fisA00 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Homeodomain-like 0.9703 396 440 1.10.10.60
5m7nA02 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;P-loop containing nucleotide triphosphate hydrolases 0.9696 147 313 3.40.50.300
3fisB00 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Homeodomain-like 0.9681 396 440 1.10.10.60
ID Description Score Start End GO Terms
AF-A0A257VW85-F1-model_v4 Fis family transcriptional regulator 0.9677 144 360 GO:0005524
GO:0006355
GO:0016887
AF-A0A529XBP4-F1-model_v4 Sigma-54-dependent Fis family transcriptional regulator 0.9579 2 121 GO:0000160
AF-A0A7X7MW69-F1-model_v4 Sigma 54-interacting transcriptional regulator 0.9529 144 375 GO:0003677
GO:0005524
GO:0006355
GO:0016887
AF-A0A6L3MVY1-F1-model_v4 Sigma-54-dependent Fis family transcriptional regulator 0.9514 145 375 GO:0003677
GO:0005524
GO:0006355
GO:0016887
AF-F4L6D7-F1-model_v4 Two component transcriptional regulator, winged helix family 0.9409 5 123 GO:0000156
GO:0000976
GO:0005829
GO:0006355
GO:0032993

Map