F410751

General Info

Members Datasets Scaffolds Average Seq Length
331 225 663 430

Family's Representative Sequence

Representative Sequence iso_pu_bacteria|8036736890|8036737855
Length 477
Sequence AVIGQGYVGLPLAIEFSQHFPVLGFDINKERVQELNAGQDRTLEADLQKLNEGIATAKTTNFTKGYKASCDIEDLTQARIYIVTVPTPIDRFNAPNLTPLLKASEMLGNVLKKGDIVIYESTVYPGCTEEDCVPVLEKHSGLVFNQDFYVGYSPERINPGDKVNTLTTIKKVTSGSTPEIAEEIDQLYKTIITAGTHKAPNIKVAEASKAIENAQRDVNISFVNELALIFDRIGIDTNDVLEAAGTKFNFLKYKPGLVGGHCISVDPYYLAHKATQLGYYPDVILSGRRVNDSVAAFIASKVVKLMIKKGTVVQGAKALILGVTFKENCPDVRNTKVVDVYRELKEYGVNVDVYDPWADAEEVQHKYGITCHSELPCHPELSEDSRALLEQAKQSHSERATVVSSLSSCHPELVEGSQPTDSTIQQSNDSTPKYDAIIVAVAHNEFLTLDINKLKNDQAVVYDIKACLDRELVDARL

Samples

Sample ID Description Type Environment
1 2162886007 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 v1 Metagenome Rhizosphere
2 3300001989 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5 Metagenome Rhizosphere
3 3300002737 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mTSA Metagenome Endosphere
4 3300002738 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mTSA Metagenome Unclassified
5 3300002741 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mCL Metagenome Unclassified
6 3300002772 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mMS Metagenome Endosphere
7 3300002774 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mTSA Metagenome Endosphere
8 3300003187 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mLB Metagenome Endosphere
9 3300003214 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mCL Metagenome Endosphere
10 3300003215 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF Metagenome Endosphere
11 3300003316 Sugarcane root Sample L1 Metagenome Unclassified
12 3300003320 Sugarcane root Sample H2 Metagenome Unclassified
13 3300003323 Sugarcane root Sample H1 Metagenome Unclassified
14 3300003354 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMS Metagenome Endosphere
15 3300003578 Arabidopsis root microbial communities from the University of North Carolina, USA - metaT NBMF1_36_input_d2 (Metagenome Metatranscriptome, Counting Only) Metatranscriptome Unclassified
16 3300003771 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMF_r2 Metagenome Endosphere
17 3300003781 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mLB_r2 Metagenome Endosphere
18 3300003790 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMS_r2 Metagenome Endosphere
19 3300003791 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 Metagenome Endosphere
20 3300003794 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 Metagenome Endosphere
21 3300004798 Switchgrass rhizosphere and bulk soil microbial communities from Kellogg Biological Station, Michigan, USA for expression studies - roots SR-2 (Metagenome Metatranscriptome) Metatranscriptome Unclassified
22 3300004801 Switchgrass rhizosphere and bulk soil microbial communities from Kellogg Biological Station, Michigan, USA for expression studies - roots SR-3 (Metagenome Metatranscriptome) Metatranscriptome Unclassified
23 3300005262 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMF (version 2) (version 3) Metagenome Endosphere
24 3300005288 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Rhizosphere Soil Replicate 2: eDNA_1 v2 (version 2) Metagenome Rhizosphere
25 3300005289 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 v2 (version 2) Metagenome Rhizosphere
26 3300005329 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG Metagenome Rhizosphere
27 3300005335 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG Metagenome Rhizosphere
28 3300005337 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3L metaG Metagenome Rhizosphere
29 3300005339 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG Metagenome Rhizosphere
30 3300005356 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG Metagenome Rhizosphere
31 3300005457 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG Metagenome Rhizosphere
32 3300005535 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG Metagenome Rhizosphere
33 3300005543 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG Metagenome Rhizosphere
34 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
35 3300005841 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 Metagenome Rhizosphere
36 3300006237 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2) (version 2) Metagenome Rhizosphere
37 3300006358 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 Metagenome Rhizosphere
38 3300006881 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 Metagenome Rhizosphere
39 3300009011 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-4 metaG Metagenome Rhizosphere
40 3300009036 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-4 metaG Metagenome Rhizosphere
41 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
42 3300009101 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG Metagenome Rhizosphere
43 3300009148 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG Metagenome Rhizosphere
44 3300009174 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG Metagenome Rhizosphere
45 3300009177 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG Metagenome Rhizosphere
46 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
47 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
48 3300013100 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6-5 metaG Metagenome Rhizosphere
49 3300013102 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG Metagenome Rhizosphere
50 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
51 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
52 3300013296 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG Metagenome Rhizosphere
53 3300013297 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG Metagenome Rhizosphere
54 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
55 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
56 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
57 3300014325 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG Metagenome Rhizosphere
58 3300014968 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG Metagenome Rhizosphere
59 3300014969 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG Metagenome Rhizosphere
60 3300015261 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-104_1 MetaG Metagenome Rhizosphere
61 3300015262 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-113_1 MetaG Metagenome Rhizosphere
62 3300015682 Rizhosphere microbial communities from mature sugarcane plants Campinas, Sao Paulo, Brazil - 001.1_A01 Metagenome Rhizosphere
63 3300017792 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG Metagenome Rhizosphere
64 3300021384 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 Metagenome Unclassified
65 3300025208 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mTSA (SPAdes) (version 2) Metagenome Endosphere
66 3300025231 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mMS (SPAdes) (version 2) Metagenome Endosphere
67 3300025233 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mTSA (SPAdes) (version 2) Metagenome Endosphere
68 3300025245 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mTSA (SPAdes) (version 3) Metagenome Endosphere
69 3300025246 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mTSA (SPAdes) (version 2) Metagenome Unclassified
70 3300025250 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mCL (SPAdes) (version 2) Metagenome Unclassified
71 3300025258 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMS (SPAdes) (version 3) Metagenome Endosphere
72 3300025261 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mCL (SPAdes) (version 2) Metagenome Endosphere
73 3300025273 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMS_r2 (SPAdes) (version 3) Metagenome Endosphere
74 3300025284 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mLB (SPAdes) (version 2) Metagenome Endosphere
75 3300025291 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mLB_r2 (SPAdes) (version 3) Metagenome Endosphere
76 3300025292 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mLB_r2 (SPAdes) (version 2) Metagenome Endosphere
77 3300025294 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mLB (SPAdes) (version 2) Metagenome Endosphere
78 3300025295 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMF_r2 (SPAdes) (version 3) Metagenome Endosphere
79 3300025297 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF (SPAdes) (version 2) Metagenome Endosphere
80 3300025298 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 (SPAdes) (version 2) Metagenome Endosphere
81 3300025302 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMS (SPAdes) (version 2) Metagenome Endosphere
82 3300025304 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
83 3300025728 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
84 3300025735 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
85 3300025904 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2 (SPAdes) (version 2) Metagenome Rhizosphere
86 3300025911 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
87 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
88 3300025914 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
89 3300025919 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
90 3300025932 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
91 3300025933 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
92 3300025935 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
93 3300025944 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
94 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
95 3300025986 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
96 3300026088 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes) (version 2) Metagenome Rhizosphere
97 3300026089 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes) (version 2) Metagenome Rhizosphere
98 3300026121 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
99 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
100 3300031251 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-21 metaG Metagenome Rhizosphere
101 3300031665 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J5-7_050615r2r3 Metagenome Rhizosphere
102 3300031691 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J5-7_160517rDrA Metagenome Rhizosphere
103 3300031727 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_050615r3r5 Metagenome Rhizosphere
104 3300031733 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S5-7_050615r2r1 Metagenome Rhizosphere
105 3300031911 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1 Metagenome Rhizosphere
106 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
107 3300032004 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3 Metagenome Rhizosphere
108 3300032137 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S_170502SCrBrC Metagenome Rhizosphere
109 3300035398 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_050615r2r1 Metagenome Rhizosphere
110 3300036647 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J_170502JArCrA Metagenome Rhizosphere
111 3300036712 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S_170502SBrCrA Metagenome Rhizosphere
112 3300037312 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_B SG_2 Metagenome Rhizosphere
113 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
114 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
115 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
116 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
117 3300039437 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 v2 Metagenome Unclassified
118 3300041411 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0409DE14Z080117_6708 Metagenome Rhizosphere
119 3300041413 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - SB0710WE14Z080117_6839 Metagenome Rhizosphere
120 3300041997 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0317DE14Z082817_5607 Metagenome Rhizosphere
121 3300042007 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0612DE14Z070717_5290 Metagenome Rhizosphere
122 3300042876 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9GH_GED Metagenome Rhizosphere
123 3300044673 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Bulk_9BB_GED Metagenome Rhizosphere
124 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
125 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
126 3300046453 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co3_8_57 rhizosphere Metagenome Rhizosphere
127 3300046460 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co3_31_37 rhizosphere Metagenome Rhizosphere
128 3300046462 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-86-CL2_69_17 rhizosphere Metagenome Rhizosphere
129 3300046474 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co1_31_6 rhizosphere Metagenome Rhizosphere
130 3300046500 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co1_23_3 rhizosphere Metagenome Rhizosphere
131 3300046501 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co3_27_41 rhizosphere Metagenome Rhizosphere
132 3300046506 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co1_30_3 rhizosphere Metagenome Rhizosphere
133 3300046507 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co2_62_14 rhizosphere Metagenome Rhizosphere
134 3300046511 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-331-CL2_55_18 rhizosphere Metagenome Rhizosphere
135 3300046512 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co2_50_17 rhizosphere Metagenome Rhizosphere
136 3300046513 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-351-Co2_42_17 rhizosphere Metagenome Rhizosphere
137 3300046516 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL1_35_3 rhizosphere Metagenome Rhizosphere
138 3300046519 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co2_51_16 rhizosphere Metagenome Rhizosphere
139 3300046522 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 rhizosphere Metagenome Rhizosphere
140 3300046525 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co1_23_6 rhizosphere Metagenome Rhizosphere
141 3300046529 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-866-CL2_50_11 rhizosphere Metagenome Rhizosphere
142 3300046530 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-866-Co1_10_5 rhizosphere Metagenome Rhizosphere
143 3300046616 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co1_14_4 rhizosphere Metagenome Rhizosphere
144 3300046665 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co3_16_51 rhizosphere Metagenome Rhizosphere
145 3300046679 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL2_50_4 rhizosphere Metagenome Rhizosphere
146 3300046694 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 rhizosphere Metagenome Rhizosphere
147 3300047470 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWA-24-3-Co1_3_5 rhizosphere Metagenome Rhizosphere
148 3300047472 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co2_54_22 rhizosphere Metagenome Rhizosphere
149 3300048088 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL2_56_7 rhizosphere Metagenome Rhizosphere
150 3300048905 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1c N15 Metagenome Rhizoplane
151 3300048916 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5d N15 Metagenome Rhizoplane
152 3300048919 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_7x unlabeled Metagenome Unclassified
153 3300048920 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1e N15 Metagenome Unclassified
154 3300048921 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1f N15 Metagenome Unclassified
155 3300048922 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2e N15 Metagenome Unclassified
156 3300048925 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8x unlabeled Metagenome Unclassified
157 3300048926 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8y unlabeled Metagenome Unclassified
158 3300048927 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_4e N15 Metagenome Unclassified
159 3300048928 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_5e N15 Metagenome Unclassified
160 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
161 3300049460 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWA-24-3-Co2_41_10 rhizosphere Metagenome Rhizosphere
162 3300049551 Metatranscriptome of panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - E22_A_7_drought (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
163 3300049586 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 Metagenome Rhizosphere
164 3300049758 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - D15_A_3_drought Metagenome Rhizosphere
165 3300049766 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - E14_B_4_drought Metagenome Rhizosphere
166 3300053080 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-905-CL1_32_20 endosphere Metagenome Endosphere
167 3300053090 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co3_31_39 endosphere Metagenome Endosphere
168 3300053093 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co2_62_24 endosphere Metagenome Endosphere
169 3300053109 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co2_52_27 endosphere Metagenome Endosphere
170 3300053130 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co2_44_8 endosphere Metagenome Endosphere
171 3300053153 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 endosphere Metagenome Endosphere
172 3300053156 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 endosphere Metagenome Endosphere
173 3300053158 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-866-Co1_10_5 endosphere Metagenome Endosphere
174 8036736890 Flavobacterium dauae TCH3-2 Isolate Rhizosphere
175 2551306352 Acinetobacter sp. GG2 Isolate Rhizosphere
176 2582581278 Chryseobacterium sp. CF365 Isolate Rhizosphere
177 2585427687 Pedobacter borealis DSM 19626 Isolate Rhizosphere
178 2585428045 Chryseobacterium sp. OV705 Isolate Rhizosphere
179 2585428060 Chryseobacterium sp. OV715 Isolate Rhizosphere
180 2585428182 Chryseobacterium sp. YR477 Isolate Rhizosphere
181 2585428183 Chryseobacterium sp. YR485 Isolate Rhizosphere
182 2585428184 Chryseobacterium sp. YR480 Isolate Rhizosphere
183 2585428185 Chryseobacterium sp. YR459 Isolate Rhizosphere
184 2588253712 Chryseobacterium sp. OV279 Isolate Rhizosphere
185 2588254255 Chryseobacterium sp. YR221 Isolate Rhizosphere
186 2588254257 Chryseobacterium sp. YR203 Isolate Rhizosphere
187 2643221667 Flavobacterium sp. Root420 Isolate Unclassified
188 2675903507 Acinetobacter calcoaceticus GK2 Isolate Unclassified
189 2721755487 Sphingobacterium sp. B29 Isolate Rhizosphere
190 2728369107 Chryseobacterium kwangjuense KJ1R5 Isolate Unclassified
191 2738541273 Elizabethkingia sp. YR214 Isolate Unclassified
192 2738541284 Pedobacter sp. YR016 Isolate Unclassified
193 2738543014 Elizabethkingia sp. YR191 Isolate Unclassified
194 2751185877 Chryseobacterium artocarpi UTM-3 Isolate Rhizosphere
195 2765235839 Chryseobacterium indologenes AA5 Isolate Unclassified
196 2773857761 Acinetobacter sp. 3664 Isolate Unclassified
197 2775506739 Chryseobacterium sp. 1335 Isolate Unclassified
198 2816332188 Chryseobacterium aquifrigidense 110 (version 2) Isolate Unclassified
199 2818991437 Pedobacter terrae 518 Isolate Unclassified
200 2818991444 Filimonas endophytica 3197 Isolate Unclassified
201 2818991460 Chitinophaga polysaccharea 1209 Isolate Unclassified
202 2821136567 Chitinophaga sancti 1232 Isolate Unclassified
203 2840677318 Chitinophaga alhagiae T22 Isolate Unclassified
204 2849281842 Pedobacter sp. AK013 Isolate Rhizosphere
205 2857627736 Pedobacter sp. R-74587 Isolate Unclassified
206 2871720351 Chryseobacterium sp. KLBC 52 Isolate Nodule
207 2884791551 Chitinophaga oryzae 1310 Isolate Unclassified
208 2889290771 Chryseobacterium sp. PvR013 Isolate Rhizosphere
209 2895511927 Pseudoxanthomonas sp. SGD-5-1 Isolate Rhizosphere
210 2896085136 Chitinophaga alhagiae T22 Isolate Unclassified
211 2896317667 Sphingobacterium sp. SGR-19 Isolate Rhizosphere
212 2904445276 Pedobacter terrae 1734 Isolate Rhizosphere
213 2904467357 Chitinophaga sancti 3198 Isolate Unclassified
214 2904780799 Sphingobacterium sp. 1304 Isolate Rhizosphere
215 2905999023 Chryseobacterium elymi KCTC 22547 Isolate Rhizosphere
216 2916699645 Acinetobacter ursingii M3 Isolate Unclassified
217 2919097161 Chryseobacterium ginsenosidimutans 1394 Isolate Rhizosphere
218 2919177583 Sphingobacterium sp. 2149 Isolate Rhizosphere
219 2919182534 Acinetobacter calcoaceticus 2589 Isolate Rhizosphere
220 2919399522 Chryseobacterium sp. 2987 Isolate Unclassified
221 2929921140 Chitinophaga sp. R-72609 Hybrid assembly Isolate Unclassified
222 2993372514 Chryseobacterium sp. SLBN-27 Isolate Rhizosphere
223 2993480792 Chryseobacterium nepalense SLBN-92 Isolate Rhizosphere
224 3003233435 Sphingobacterium shayense CrR18 Isolate Unclassified
225 646564506 Arcobacter nitrofigilis DSM 7299 Isolate Unclassified

Type Distribution

Type Percentage (%)
Metagenomes 83.08
Metatranscriptomes 1.21
Isolates 15.71

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 16.62
Nodule 0.3
Rhizoplane 0.6
Rhizosphere 63.14
Stem 0
Stem Tuber 0
Unclassified 0

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 SwRhRL2b_contig_1137231 2162886007 Bacteria 2268
2 JGI24739J22299_10008864 3300001989 Bacteria 3750
3 JGI25162J39368_1000204 3300002737 Bacteria 62620
4 JGI25154J39366_1000003 3300002738 Bacteria 397627
5 JGI25157J39369_1002794 3300002741 Bacteria 3984
6 JGI25164J39214_1000712 3300002772 Bacteria 12758
7 JGI25150J39212_1000023 3300002774 Bacteria 130663
8 JGI25151J46595_10000082 3300003187 Bacteria 130832
9 JGI25165J46597_1001221 3300003214 Bacteria 15391
10 JGI25153J46596_10000060 3300003215 Bacteria 131744
11 JGI25153J46596_10024305 3300003215 Bacteria 2187
12 rootH1_10107018 3300003316 Bacteria 1672
13 rootH1_10107018 3300003323 Bacteria 1670
14 rootH2_10008573 3300003320 Bacteria 5807
15 rootH2_10028284 3300003320 Bacteria 6359
16 rootH2_10028634 3300003320 Bacteria 4963
17 rootH2_10040683 3300003320 Bacteria 12908
18 rootH2_10042620 3300003320 Bacteria 1924
19 rootH1_10014058 3300003323 Bacteria 71578
20 rootH1_10028670 3300003323 Bacteria 7115
21 rootH1_10070863 3300003323 Bacteria 3819
22 JGI25160J50197_1001506 3300003354 Bacteria 11577
23 JGI25160J50197_1002210 3300003354 Bacteria 9140
24 JGI25160J50197_1009966 3300003354 Bacteria 3477
25 Ga0006562J51391_1029364 3300003578 Bacteria 2200
26 Ga0055526_1003700 3300003771 Bacteria 9556
27 Ga0055536_1000002 3300003781 Bacteria 605605
28 Ga0055528_1000312 3300003790 Bacteria 41028
29 Ga0055530_10000372 3300003791 Bacteria 40539
30 Ga0055530_10001816 3300003791 Bacteria 14771
31 Ga0055531_10000003 3300003794 Bacteria 274424
32 Ga0058859_10681373 3300004798 Bacteria 7639
33 Ga0058860_12178914 3300004801 Bacteria 9268
34 Ga0065165_1000019 3300005262 Bacteria 271815
35 Ga0065165_1000056 3300005262 Bacteria 186730
36 Ga0065714_10064439 3300005288 Bacteria 112310
37 Ga0065714_10065375 3300005288 Bacteria 10497
38 Ga0065704_10006769 3300005289 Bacteria 2544
39 Ga0065704_10072727 3300005289 Bacteria 8090
40 Ga0065704_10085261 3300005289 Bacteria 3240
41 Ga0065704_10091678 3300005289 Bacteria 2701
42 Ga0065704_10123296 3300005289 Bacteria 1694
43 Ga0070683_100000849 3300005329 Bacteria 22644
44 Ga0070666_10085167 3300005335 Bacteria 2164
45 Ga0070682_100000111 3300005337 Bacteria 72333
46 Ga0070682_100035302 3300005337 Bacteria 3052
47 Ga0070660_100000497 3300005339 Bacteria 26196
48 Ga0070660_100020991 3300005339 Bacteria 4809
49 Ga0070674_100025244 3300005356 Bacteria 3867
50 Ga0070662_100000377 3300005457 Bacteria 26646
51 Ga0070684_100030797 3300005535 Bacteria 4563
52 Ga0070672_100238521 3300005543 Bacteria 1529
53 Ga0070665_100003535 3300005548 Bacteria 16618
54 Ga0068863_100033733 3300005841 Bacteria 4877
55 Ga0097621_100000711 3300006237 Bacteria 23348
56 Ga0068871_100000351 3300006358 Bacteria 31972
57 Ga0068865_100033552 3300006881 Bacteria 3438
58 Ga0105251_10002073 3300009011 Bacteria 16174
59 Ga0105251_10002557 3300009011 Bacteria 14131
60 Ga0105244_10000001 3300009036 Bacteria 1034899
61 Ga0105244_10003221 3300009036 Bacteria 11822
62 Ga0105240_10000173 3300009093 Bacteria 131281
63 Ga0105247_10128751 3300009101 Bacteria 1648
64 Ga0105243_10000016 3300009148 Bacteria 235629
65 Ga0105241_10005396 3300009174 Bacteria 9451
66 Ga0105248_10072609 3300009177 Bacteria 3867
67 Ga0105237_10000972 3300009545 Bacteria 38509
68 Ga0105237_10001614 3300009545 Bacteria 29283
69 Ga0105237_10021919 3300009545 Bacteria 6560
70 Ga0105237_10095996 3300009545 Bacteria 2955
71 Ga0105239_10000255 3300010375 Bacteria 79421
72 Ga0105239_10000415 3300010375 Bacteria 62156
73 Ga0105239_10000775 3300010375 Bacteria 45289
74 Ga0105239_10008462 3300010375 Bacteria 11701
75 Ga0105239_10139712 3300010375 Bacteria 2699
76 Ga0105239_10301578 3300010375 Bacteria 1804
77 Ga0105239_10407519 3300010375 Bacteria 1539
78 Ga0157373_10000083 3300013100 Bacteria 81952
79 Ga0157373_10000280 3300013100 Bacteria 41000
80 Ga0157373_10001045 3300013100 Bacteria 21327
81 Ga0157371_10003213 3300013102 Bacteria 15005
82 Ga0157370_10000552 3300013104 Bacteria 46652
83 Ga0157370_10000637 3300013104 Bacteria 43772
84 Ga0157370_10001430 3300013104 Bacteria 29613
85 Ga0157370_10002050 3300013104 Bacteria 24746
86 Ga0157370_10004794 3300013104 Bacteria 15377
87 Ga0157370_10030543 3300013104 Bacteria 5279
88 Ga0157370_10086112 3300013104 Bacteria 2952
89 Ga0157369_10000594 3300013105 Bacteria 47098
90 Ga0157369_10036175 3300013105 Bacteria 5411
91 Ga0157374_10001038 3300013296 Bacteria 24088
92 Ga0157374_10003039 3300013296 Bacteria 14070
93 Ga0157378_10006428 3300013297 Bacteria 10276
94 Ga0163162_10000123 3300013306 Bacteria 68905
95 Ga0163162_10000833 3300013306 Bacteria 28693
96 Ga0163162_10249470 3300013306 Bacteria 1907
97 Ga0157372_10003136 3300013307 Bacteria 17810
98 Ga0157372_10013078 3300013307 Bacteria 8854
99 Ga0157372_10019750 3300013307 Bacteria 7262
100 Ga0157372_10078828 3300013307 Bacteria 3723
101 Ga0157375_10000073 3300013308 Bacteria 105972
102 Ga0157375_10000220 3300013308 Bacteria 53557
103 Ga0157375_10175907 3300013308 Bacteria 2290
104 Ga0157375_10194817 3300013308 Bacteria 2181
105 Ga0163163_10000129 3300014325 Bacteria 77897
106 Ga0157379_10003405 3300014968 Bacteria 13451
107 Ga0157376_10001988 3300014969 Bacteria 13680
108 Ga0182006_1000003 3300015261 Bacteria 826681
109 Ga0182006_1000859 3300015261 Bacteria 20453
110 Ga0182007_10000024 3300015262 Bacteria 181761
111 Ga0183373_1002 3300015682 Bacteria 990153
112 Ga0163161_10000093 3300017792 Bacteria 90618
113 Ga0163161_10000094 3300017792 Bacteria 90423
114 Ga0163161_10000238 3300017792 Bacteria 50049
115 Ga0163161_10005695 3300017792 Bacteria 8637
116 Ga0163161_10007274 3300017792 Bacteria 7644
117 Ga0163161_10071845 3300017792 Bacteria 2533
118 Ga0213876_10008032 3300021384 Bacteria 5720
119 Ga0213876_10022693 3300021384 Bacteria 3316
120 Ga0209436_100413 3300025208 Bacteria 19243
121 Ga0209436_106618 3300025208 Bacteria 2519
122 Ga0207427_100223 3300025231 Bacteria 48426
123 Ga0209437_100164 3300025233 Bacteria 145317
124 Ga0207425_1000051 3300025245 Bacteria 166795
125 Ga0209646_1000004 3300025246 Bacteria 786587
126 Ga0209026_1000192 3300025250 Bacteria 88221
127 Ga0209129_1000121 3300025258 Bacteria 135404
128 Ga0209233_1000242 3300025261 Bacteria 90301
129 Ga0209673_1000014 3300025273 Bacteria 537082
130 Ga0209673_1010482 3300025273 Bacteria 3905
131 Ga0209130_1004761 3300025284 Bacteria 5015
132 Ga0209675_1000053 3300025291 Bacteria 194511
133 Ga0209676_1000022 3300025292 Bacteria 605659
134 Ga0209025_1000160 3300025294 Bacteria 166795
135 Ga0209564_1001335 3300025295 Bacteria 26264
136 Ga0209758_1000147 3300025297 Bacteria 166795
137 Ga0209758_1001625 3300025297 Bacteria 25604
138 Ga0209758_1003912 3300025297 Bacteria 12996
139 Ga0209758_1012301 3300025297 Bacteria 4804
140 Ga0209050_1000020 3300025298 Bacteria 605671
141 Ga0209050_1000838 3300025298 Bacteria 42361
142 Ga0207426_1000023 3300025302 Bacteria 545465
143 Ga0207426_1000134 3300025302 Bacteria 202226
144 Ga0207426_1000786 3300025302 Bacteria 34729
145 Ga0207426_1000904 3300025302 Bacteria 29822
146 Ga0207426_1000930 3300025302 Bacteria 29211
147 Ga0207426_1003800 3300025302 Bacteria 7836
148 Ga0209257_1000008 3300025304 Bacteria 1294570
149 Ga0209257_1005435 3300025304 Bacteria 8947
150 Ga0207655_1000013 3300025728 Bacteria 637510
151 Ga0207713_1001841 3300025735 Bacteria 16182
152 Ga0207713_1002279 3300025735 Bacteria 14139
153 Ga0207647_10000142 3300025904 Bacteria 57329
154 Ga0207647_10081068 3300025904 Bacteria 1945
155 Ga0207654_10012670 3300025911 Bacteria 4325
156 Ga0207654_10026565 3300025911 Bacteria 3137
157 Ga0207695_10000053 3300025913 Bacteria 396740
158 Ga0207671_10000731 3300025914 Bacteria 41649
159 Ga0207671_10002062 3300025914 Bacteria 21988
160 Ga0207671_10006642 3300025914 Bacteria 10253
161 Ga0207671_10125789 3300025914 Bacteria 1963
162 Ga0207657_10064585 3300025919 Bacteria 3124
163 Ga0207690_10150571 3300025932 Bacteria 1725
164 Ga0207706_10000057 3300025933 Bacteria 112805
165 Ga0207709_10000020 3300025935 Bacteria 392366
166 Ga0207661_10002359 3300025944 Bacteria 13003
167 Ga0207667_10052159 3300025949 Bacteria 4310
168 Ga0207658_10033685 3300025986 Bacteria 3655
169 Ga0207641_10105467 3300026088 Bacteria 2489
170 Ga0207648_10314225 3300026089 Bacteria 1407
171 Ga0207683_10042125 3300026121 Bacteria 3987
172 Ga0268266_10001971 3300028379 Bacteria 23030
173 Ga0265327_10010032 3300031251 Bacteria 6730
174 Ga0316575_10006896 3300031665 Bacteria 4111
175 Ga0316579_10010106 3300031691 Bacteria 3982
176 Ga0316576_10002403 3300031727 Bacteria 10628
177 Ga0316577_10001141 3300031733 Bacteria 12150
178 Ga0307412_10000001 3300031911 Bacteria 822691
179 Ga0307412_10000032 3300031911 Bacteria 207098
180 Ga0307412_10000222 3300031911 Bacteria 38184
181 Ga0307412_10006071 3300031911 Bacteria 6800
182 Ga0307416_100000017 3300032002 Bacteria 201722
183 Ga0307414_10000380 3300032004 Bacteria 24231
184 Ga0307414_10000444 3300032004 Bacteria 21901
185 Ga0316585_10000060 3300032137 Bacteria 17679
186 Ga0316574_0000004 3300035398 Bacteria 49638
187 Ga0316582_0000432 3300036647 Bacteria 15379
188 Ga0316584_0000070 3300036712 Bacteria 40891
189 Ga0395899_0010393 3300037312 Bacteria 7132
190 Ga0395900_0000143 3300037418 Bacteria 120234
191 Ga0395898_0019285 3300037466 Bacteria 6944
192 Ga0395905_0000045 3300037471 Bacteria 241370
193 Ga0395905_0001051 3300037471 Bacteria 34886
194 Ga0395905_0001963 3300037471 Bacteria 23525
195 Ga0395901_0003584 3300038443 Bacteria 15660
196 Ga0395901_0003957 3300038443 Bacteria 14901
197 Ga0436365_0738964 3300039437 Bacteria 22899
198 Ga0436365_1399871 3300039437 Bacteria 18429
199 Ga0439466_0000350 3300041411 Bacteria 17723
200 Ga0439465_0000705 3300041413 Bacteria 10267
201 Ga0439431_0000603 3300041997 Bacteria 7599
202 Ga0439449_0001776 3300042007 Bacteria 8478
203 Ga0451577_0000311 3300042876 Bacteria 93198
204 Ga0453683_0000437 3300044673 Bacteria 47746
205 Ga0453684_0000784 3300044712 Bacteria 109222
206 Ga0453684_0020129 3300044712 Bacteria 10096
207 Ga0453684_0133888 3300044712 Bacteria 2970
208 Ga0451576_0000452 3300045051 Bacteria 93198
209 Ga0495627_001475 3300046453 Bacteria 13666
210 Ga0495627_002985 3300046453 Bacteria 7742
211 Ga0495627_004831 3300046453 Bacteria 5551
212 Ga0495638_0001774 3300046460 Bacteria 18902
213 Ga0495638_0034584 3300046460 Bacteria 3226
214 Ga0495651_0001354 3300046462 Bacteria 18942
215 Ga0495605_0021029 3300046474 Bacteria 3460
216 Ga0495596_0002423 3300046500 Bacteria 10062
217 Ga0495607_0000760 3300046501 Bacteria 30910
218 Ga0495607_0010717 3300046501 Bacteria 6142
219 Ga0495583_0001484 3300046506 Bacteria 23471
220 Ga0495606_0038429 3300046507 Bacteria 3238
221 Ga0495608_0011708 3300046511 Bacteria 6101
222 Ga0495610_0000006 3300046512 Bacteria 856822
223 Ga0495610_0000371 3300046512 Bacteria 46658
224 Ga0495616_0011372 3300046513 Bacteria 5105
225 Ga0495628_0000037 3300046516 Bacteria 109854
226 Ga0495632_0002026 3300046519 Bacteria 15962
227 Ga0495632_0006206 3300046519 Bacteria 7734
228 Ga0495643_0001023 3300046522 Bacteria 28484
229 Ga0495643_0006109 3300046522 Bacteria 8006
230 Ga0495643_0024394 3300046522 Bacteria 3431
231 Ga0495663_0000294 3300046525 Bacteria 18926
232 Ga0495663_0000415 3300046525 Bacteria 15549
233 Ga0495652_0001293 3300046529 Bacteria 27959
234 Ga0495654_0026884 3300046530 Bacteria 2955
235 Ga0495668_0000097 3300046616 Bacteria 139246
236 Ga0495661_0002219 3300046665 Bacteria 15109
237 Ga0495623_0000854 3300046679 Bacteria 20641
238 Ga0495649_0001338 3300046694 Bacteria 18712
239 Ga0495681_0000800 3300047470 Bacteria 24221
240 Ga0495681_0031443 3300047470 Bacteria 2686
241 Ga0495686_0000079 3300047472 Bacteria 202668
242 Ga0495686_0000587 3300047472 Bacteria 51313
243 Ga0495602_0038814 3300048088 Bacteria 4396
244 Ga0496102_0186099 3300048905 Bacteria 1957
245 Ga0496113_0090079 3300048916 Bacteria 2362
246 Ga0496116_0000006 3300048919 Bacteria 811937
247 Ga0496117_0000027 3300048920 Bacteria 412234
248 Ga0496118_0000620 3300048921 Bacteria 58296
249 Ga0496119_0000006 3300048922 Bacteria 505999
250 Ga0496122_0000444 3300048925 Bacteria 86587
251 Ga0496122_0000448 3300048925 Bacteria 86293
252 Ga0496122_0000665 3300048925 Bacteria 69182
253 Ga0496122_0001430 3300048925 Bacteria 38686
254 Ga0496122_0003044 3300048925 Bacteria 22679
255 Ga0496122_0009647 3300048925 Bacteria 10106
256 Ga0496123_0011801 3300048926 Bacteria 7525
257 Ga0496123_0070885 3300048926 Bacteria 2178
258 Ga0496123_0085081 3300048926 Bacteria 1904
259 Ga0496124_0000475 3300048927 Bacteria 69109
260 Ga0496125_0001099 3300048928 Bacteria 41620
261 Ga0496125_0025517 3300048928 Bacteria 5410
262 Ga0496125_0047951 3300048928 Bacteria 3567
263 Ga0496125_0059594 3300048928 Bacteria 3075
264 Ga0496126_0000459 3300048929 Bacteria 81162
265 Ga0496126_0021923 3300048929 Bacteria 6230
266 Ga0495682_0000983 3300049460 Bacteria 17062
267 Ga0501335_000081 3300049551 Bacteria 4211
268 Ga0501070_0055050 3300049586 Bacteria 3298
269 Ga0501241_000018 3300049758 Bacteria 95195
270 Ga0501269_000035 3300049766 Bacteria 41924
271 Ga0501269_003721 3300049766 Bacteria 1839
272 Ga0500635_0010672 3300053080 Bacteria 2589
273 Ga0500635_0015538 3300053080 Bacteria 2250
274 Ga0500646_0004102 3300053090 Bacteria 3699
275 Ga0500651_0000355 3300053093 Bacteria 25690
276 Ga0500569_002313 3300053109 Bacteria 3736
277 Ga0500642_0025320 3300053130 Bacteria 2408
278 Ga0500616_0009265 3300053153 Bacteria 6000
279 Ga0500622_0000123 3300053156 Bacteria 81320
280 Ga0500627_0005996 3300053158 Bacteria 4092
281 8036737855 8036736890 Bacteria 2944828
282 2552747714 2551306352 Bacteria 3873115
283 2585142889 2582581278 Bacteria 5296881
284 2586209936 2585427687 Bacteria 5544917
285 2587678724 2585428045 Bacteria 5203023
286 2587746082 2585428060 Bacteria 5304711
287 2588210244 2585428182 Bacteria 5007281
288 2588214529 2585428183 Bacteria 5166119
289 2588217760 2585428184 Bacteria 4978681
290 2588223026 2585428185 Bacteria 4969476
291 2588444157 2588253712 Bacteria 5403181
292 2590601476 2588254255 Bacteria 5014294
293 2590613922 2588254257 Bacteria 5436094
294 2644373972 2643221667 Bacteria 5627472
295 2678229525 2675903507 Bacteria 3737791
296 2722725715 2721755487 Bacteria 6357185
297 2729199987 2728369107 Bacteria 5082720
298 2738701275 2738541273 Bacteria 4048577
299 2738763236 2738541284 Bacteria 5199923
300 2739255573 2738543014 Bacteria 4048139
301 2753673059 2751185877 Bacteria 4921427
302 2765574148 2765235839 Bacteria 5314748
303 2774391099 2773857761 Bacteria 3837365
304 2775671991 2775506739 Bacteria 3855222
305 2816874365 2816332188 Bacteria 5133218
306 2819549546 2818991437 Bacteria 5805520
307 2819586794 2818991444 Bacteria 6968812
308 2819679876 2818991460 Bacteria 7595395
309 2821138408 2821136567 Bacteria 8080116
310 2840678420 2840677318 Bacteria 2664183
311 2849285468 2849281842 Bacteria 6065644
312 2857632425 2857627736 Bacteria 5625397
313 2871724044 2871720351 Bacteria 4862476
314 2884794434 2884791551 Bacteria 8511252
315 2889295331 2889290771 Bacteria 5530962
316 2895513503 2895511927 Bacteria 6802080
317 2896086237 2896085136 Bacteria 6129793
318 2896318911 2896317667 Bacteria 4606601
319 2904447314 2904445276 Bacteria 5310396
320 2904469204 2904467357 Bacteria 8057758
321 2904782478 2904780799 Bacteria 5840761
322 2905999972 2905999023 Bacteria 4591259
323 2916700827 2916699645 Bacteria 3568996
324 2919098571 2919097161 Bacteria 3860339
325 2919178356 2919177583 Bacteria 5641607
326 2919185985 2919182534 Bacteria 3907101
327 2919403886 2919399522 Bacteria 5164947
328 2929922165 2929921140 Bacteria 8649150
329 2993374609 2993372514 Bacteria 4214139
330 2993481490 2993480792 Bacteria 4022225
331 3003235775 3003233435 Bacteria 4458031
332 646814775 646564506 Bacteria 3192235
333 SwRhRL2b_contig_1137231
334 JGI24739J22299_10008864
335 JGI25162J39368_1000204
336 JGI25154J39366_1000003
337 JGI25157J39369_1002794
338 JGI25164J39214_1000712
339 JGI25150J39212_1000023
340 JGI25151J46595_10000082
341 JGI25165J46597_1001221
342 JGI25153J46596_10000060
343 JGI25153J46596_10024305
344 rootH1_10107018
345 rootH2_10008573
346 rootH2_10028284
347 rootH2_10028634
348 rootH2_10040683
349 rootH2_10042620
350 rootH1_10014058
351 rootH1_10028670
352 rootH1_10070863
353 JGI25160J50197_1001506
354 JGI25160J50197_1002210
355 JGI25160J50197_1009966
356 Ga0006562J51391_1029364
357 Ga0055526_1003700
358 Ga0055536_1000002
359 Ga0055528_1000312
360 Ga0055530_10000372
361 Ga0055530_10001816
362 Ga0055531_10000003
363 Ga0058859_10681373
364 Ga0058860_12178914
365 Ga0065165_1000019
366 Ga0065165_1000056
367 Ga0065714_10064439
368 Ga0065714_10065375
369 Ga0065704_10006769
370 Ga0065704_10072727
371 Ga0065704_10085261
372 Ga0065704_10091678
373 Ga0065704_10123296
374 Ga0070683_100000849
375 Ga0070666_10085167
376 Ga0070682_100000111
377 Ga0070682_100035302
378 Ga0070660_100000497
379 Ga0070660_100020991
380 Ga0070674_100025244
381 Ga0070662_100000377
382 Ga0070684_100030797
383 Ga0070672_100238521
384 Ga0070665_100003535
385 Ga0068863_100033733
386 Ga0097621_100000711
387 Ga0068871_100000351
388 Ga0068865_100033552
389 Ga0105251_10002073
390 Ga0105251_10002557
391 Ga0105244_10000001
392 Ga0105244_10003221
393 Ga0105240_10000173
394 Ga0105247_10128751
395 Ga0105243_10000016
396 Ga0105241_10005396
397 Ga0105248_10072609
398 Ga0105237_10000972
399 Ga0105237_10001614
400 Ga0105237_10021919
401 Ga0105237_10095996
402 Ga0105239_10000255
403 Ga0105239_10000415
404 Ga0105239_10000775
405 Ga0105239_10008462
406 Ga0105239_10139712
407 Ga0105239_10301578
408 Ga0105239_10407519
409 Ga0157373_10000083
410 Ga0157373_10000280
411 Ga0157373_10001045
412 Ga0157371_10003213
413 Ga0157370_10000552
414 Ga0157370_10000637
415 Ga0157370_10001430
416 Ga0157370_10002050
417 Ga0157370_10004794
418 Ga0157370_10030543
419 Ga0157370_10086112
420 Ga0157369_10000594
421 Ga0157369_10036175
422 Ga0157374_10001038
423 Ga0157374_10003039
424 Ga0157378_10006428
425 Ga0163162_10000123
426 Ga0163162_10000833
427 Ga0163162_10249470
428 Ga0157372_10003136
429 Ga0157372_10013078
430 Ga0157372_10019750
431 Ga0157372_10078828
432 Ga0157375_10000073
433 Ga0157375_10000220
434 Ga0157375_10175907
435 Ga0157375_10194817
436 Ga0163163_10000129
437 Ga0157379_10003405
438 Ga0157376_10001988
439 Ga0182006_1000003
440 Ga0182006_1000859
441 Ga0182007_10000024
442 Ga0183373_1002
443 Ga0163161_10000093
444 Ga0163161_10000094
445 Ga0163161_10000238
446 Ga0163161_10005695
447 Ga0163161_10007274
448 Ga0163161_10071845
449 Ga0213876_10008032
450 Ga0213876_10022693
451 Ga0209436_100413
452 Ga0209436_106618
453 Ga0207427_100223
454 Ga0209437_100164
455 Ga0207425_1000051
456 Ga0209646_1000004
457 Ga0209026_1000192
458 Ga0209129_1000121
459 Ga0209233_1000242
460 Ga0209673_1000014
461 Ga0209673_1010482
462 Ga0209130_1004761
463 Ga0209675_1000053
464 Ga0209676_1000022
465 Ga0209025_1000160
466 Ga0209564_1001335
467 Ga0209758_1000147
468 Ga0209758_1001625
469 Ga0209758_1003912
470 Ga0209758_1012301
471 Ga0209050_1000020
472 Ga0209050_1000838
473 Ga0207426_1000023
474 Ga0207426_1000134
475 Ga0207426_1000786
476 Ga0207426_1000904
477 Ga0207426_1000930
478 Ga0207426_1003800
479 Ga0209257_1000008
480 Ga0209257_1005435
481 Ga0207655_1000013
482 Ga0207713_1001841
483 Ga0207713_1002279
484 Ga0207647_10000142
485 Ga0207647_10081068
486 Ga0207654_10012670
487 Ga0207654_10026565
488 Ga0207695_10000053
489 Ga0207671_10000731
490 Ga0207671_10002062
491 Ga0207671_10006642
492 Ga0207671_10125789
493 Ga0207657_10064585
494 Ga0207690_10150571
495 Ga0207706_10000057
496 Ga0207709_10000020
497 Ga0207661_10002359
498 Ga0207667_10052159
499 Ga0207658_10033685
500 Ga0207641_10105467
501 Ga0207648_10314225
502 Ga0207683_10042125
503 Ga0268266_10001971
504 Ga0265327_10010032
505 Ga0316575_10006896
506 Ga0316579_10010106
507 Ga0316576_10002403
508 Ga0316577_10001141
509 Ga0307412_10000001
510 Ga0307412_10000032
511 Ga0307412_10000222
512 Ga0307412_10006071
513 Ga0307416_100000017
514 Ga0307414_10000380
515 Ga0307414_10000444
516 Ga0316585_10000060
517 Ga0316574_0000004
518 Ga0316582_0000432
519 Ga0316584_0000070
520 Ga0395899_0010393
521 Ga0395900_0000143
522 Ga0395898_0019285
523 Ga0395905_0000045
524 Ga0395905_0001051
525 Ga0395905_0001963
526 Ga0395901_0003584
527 Ga0395901_0003957
528 Ga0436365_0738964
529 Ga0436365_1399871
530 Ga0439466_0000350
531 Ga0439465_0000705
532 Ga0439431_0000603
533 Ga0439449_0001776
534 Ga0451577_0000311
535 Ga0453683_0000437
536 Ga0453684_0000784
537 Ga0453684_0020129
538 Ga0453684_0133888
539 Ga0451576_0000452
540 Ga0495627_001475
541 Ga0495627_002985
542 Ga0495627_004831
543 Ga0495638_0001774
544 Ga0495638_0034584
545 Ga0495651_0001354
546 Ga0495605_0021029
547 Ga0495596_0002423
548 Ga0495607_0000760
549 Ga0495607_0010717
550 Ga0495583_0001484
551 Ga0495606_0038429
552 Ga0495608_0011708
553 Ga0495610_0000006
554 Ga0495610_0000371
555 Ga0495616_0011372
556 Ga0495628_0000037
557 Ga0495632_0002026
558 Ga0495632_0006206
559 Ga0495643_0001023
560 Ga0495643_0006109
561 Ga0495643_0024394
562 Ga0495663_0000294
563 Ga0495663_0000415
564 Ga0495652_0001293
565 Ga0495654_0026884
566 Ga0495668_0000097
567 Ga0495661_0002219
568 Ga0495623_0000854
569 Ga0495649_0001338
570 Ga0495681_0000800
571 Ga0495681_0031443
572 Ga0495686_0000079
573 Ga0495686_0000587
574 Ga0495602_0038814
575 Ga0496102_0186099
576 Ga0496113_0090079
577 Ga0496116_0000006
578 Ga0496117_0000027
579 Ga0496118_0000620
580 Ga0496119_0000006
581 Ga0496122_0000444
582 Ga0496122_0000448
583 Ga0496122_0000665
584 Ga0496122_0001430
585 Ga0496122_0003044
586 Ga0496122_0009647
587 Ga0496123_0011801
588 Ga0496123_0070885
589 Ga0496123_0085081
590 Ga0496124_0000475
591 Ga0496125_0001099
592 Ga0496125_0025517
593 Ga0496125_0047951
594 Ga0496125_0059594
595 Ga0496126_0000459
596 Ga0496126_0021923
597 Ga0495682_0000983
598 Ga0501335_000081
599 Ga0501070_0055050
600 Ga0501241_000018
601 Ga0501269_000035
602 Ga0501269_003721
603 Ga0500635_0010672
604 Ga0500635_0015538
605 Ga0500646_0004102
606 Ga0500651_0000355
607 Ga0500569_002313
608 Ga0500642_0025320
609 Ga0500616_0009265
610 Ga0500622_0000123
611 Ga0500627_0005996
612 8036737855
613 2552747714
614 2585142889
615 2586209936
616 2587678724
617 2587746082
618 2588210244
619 2588214529
620 2588217760
621 2588223026
622 2588444157
623 2590601476
624 2590613922
625 2644373972
626 2678229525
627 2722725715
628 2729199987
629 2738701275
630 2738763236
631 2739255573
632 2753673059
633 2765574148
634 2774391099
635 2775671991
636 2816874365
637 2819549546
638 2819586794
639 2819679876
640 2821138408
641 2840678420
642 2849285468
643 2857632425
644 2871724044
645 2884794434
646 2889295331
647 2895513503
648 2896086237
649 2896318911
650 2904447314
651 2904469204
652 2904782478
653 2905999972
654 2916700827
655 2919098571
656 2919178356
657 2919185985
658 2919403886
659 2929922165
660 2993374609
661 2993481490
662 3003235775
663 646814775

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF00984

UDPG_MGDP_dh

UDP-glucose/GDP-mannose dehydrogenase family, central domain

203

293

0.97

PF03720

UDPG_MGDP_dh_C

UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain

319

470

0.95

PF03721

UDPG_MGDP_dh_N

UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain

1

190

0.92

Structural Annotation

Top 5 Hits

ID Description Score Start End
6f7v-assembly1.cif.gz_A crystal structure of lkce e64q mutant in complex with lc-ka05 0.9447 6 37
6f32-assembly1.cif.gz_A crystal structure of a dual function amine oxidase/cyclase in complex with substrate analogues 0.9333 6 38
6f7l-assembly1.cif.gz_A crystal structure of lkce r326q mutant in complex with its substrate 0.9291 6 38
6f7l-assembly1.cif.gz_B crystal structure of lkce r326q mutant in complex with its substrate 0.9266 6 38
6fjh-assembly1.cif.gz_B crystal structure of the seleniated lkce from streptomyces rochei 0.9225 6 38
ID Description Score Start End Superfamily
af_O53734_9_416_3.50.50.60 Alpha Beta;3-Layer(bba) Sandwich;FAD/NAD(P)-binding domain;FAD/NAD(P)-binding domain 0.9544 10 38 3.50.50.60
af_A0A1D8PDW7_22_394_3.50.50.60 Alpha Beta;3-Layer(bba) Sandwich;FAD/NAD(P)-binding domain;FAD/NAD(P)-binding domain 0.943 9 38 3.50.50.60
af_Q58883_2_383_3.50.50.60 Alpha Beta;3-Layer(bba) Sandwich;FAD/NAD(P)-binding domain;FAD/NAD(P)-binding domain 0.9261 8 38 3.50.50.60
5ttkA01 Alpha Beta;3-Layer(bba) Sandwich;FAD/NAD(P)-binding domain;FAD/NAD(P)-binding domain 0.9071 8 38 3.50.50.60
4wb1A02 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;NAD(P)-binding Rossmann-like Domain 0.8908 243 417 3.40.50.720
ID Description Score Start End GO Terms
AF-A0A6M1Q1K2-F1-model_v4 deleted 0.9834 6 230
AF-A0A7Y4NNS8-F1-model_v4 deleted 0.9832 194 320
AF-A0A2T4DXU0-F1-model_v4 deleted 0.9825 7 237
AF-J0V5N0-F1-model_v4 UDP-glucose/GDP-mannose dehydrogenase 0.9799 5 139 GO:0000271
GO:0016616
GO:0016628
GO:0051287
AF-A0A661HFG7-F1-model_v4 Vi polysaccharide biosynthesis protein VipA/TviB 0.9791 6 225 GO:0000271
GO:0016616
GO:0016628
GO:0051287

Map