F411366

General Info

Members Datasets Scaffolds Average Seq Length
333 201 666 480

Family's Representative Sequence

Representative Sequence 3300015261|Ga0182006_1000180|Ga0182006_100018057
Length 502
Sequence VYALLLDTHCLILKIKKMQLQDLLYGVTIKELVGKTDRQINALNFDSRKVGKDDIFFAMVGTLTDGHQFIEQTVQQGAGVIICENLPEIDDFTVTYIKVENTSVALGIMAGNYFGNPSADLKLIGITGTNGKTTIATILFKLFKDLGYKTGLLSTVENYINDTVVPATHTTPNPIALNQLLRDMVKAGCDYCFMEVSSHAVSQHRIEGLTFSGGVFSNLTHDHLDFHKTFDAYLKAKKAFFDMLPKSAFALTNIDDKNGMVMLQNTKAHKKTYALKQLADFKAKIIENQFSGLHLDIDNEDVYFKLVGSFNAYNLLAVYGTAILLEQDKLRVLTMLSRLSGAEGRFDYITSADKIIGIVDYAHTPDAVQNVLSTIANIRKGTEQVITVIGCGGDRDKTKRPIMAQVACDWSDKVILTSDNPRTEDAQAIIHDMEAGVSPTNKRKTLSILDRKEAIKTACHLAKPGDIILVAGKGHEKYQEINGVRNHFDDKEILLEQLKPIS

Samples

Sample ID Description Type Environment
1 3300015261 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-104_1 MetaG Metagenome Rhizosphere
2 2162886007 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 v1 Metagenome Rhizosphere
3 3300001990 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3 Metagenome Rhizosphere
4 3300002067 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C1 Metagenome Rhizosphere
5 3300002737 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mTSA Metagenome Endosphere
6 3300002772 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mMS Metagenome Endosphere
7 3300002773 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMS Metagenome Endosphere
8 3300002774 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mTSA Metagenome Endosphere
9 3300003187 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mLB Metagenome Endosphere
10 3300003215 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF Metagenome Endosphere
11 3300003316 Sugarcane root Sample L1 Metagenome Unclassified
12 3300003320 Sugarcane root Sample H2 Metagenome Unclassified
13 3300003322 Sugarcane root Sample L2 Metagenome Unclassified
14 3300003323 Sugarcane root Sample H1 Metagenome Unclassified
15 3300003781 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mLB_r2 Metagenome Endosphere
16 3300003791 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 Metagenome Endosphere
17 3300004799 Switchgrass rhizosphere and bulk soil microbial communities from Kellogg Biological Station, Michigan, USA for expression studies - soil CB-3 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
18 3300005288 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Rhizosphere Soil Replicate 2: eDNA_1 v2 (version 2) Metagenome Rhizosphere
19 3300005289 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 v2 (version 2) Metagenome Rhizosphere
20 3300005327 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG Metagenome Rhizosphere
21 3300005328 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG Metagenome Rhizosphere
22 3300005340 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG Metagenome Rhizosphere
23 3300005355 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG Metagenome Rhizosphere
24 3300005364 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG Metagenome Rhizosphere
25 3300005457 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG Metagenome Rhizosphere
26 3300005458 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG Metagenome Rhizosphere
27 3300005459 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 Metagenome Rhizosphere
28 3300005466 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3L metaG Metagenome Rhizosphere
29 3300005539 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 Metagenome Rhizosphere
30 3300005543 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG Metagenome Rhizosphere
31 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
32 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
33 3300005577 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 Metagenome Rhizosphere
34 3300005578 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 Metagenome Rhizosphere
35 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
36 3300005616 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 Metagenome Rhizosphere
37 3300006195 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 Metagenome Endosphere
38 3300006237 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2) (version 2) Metagenome Rhizosphere
39 3300006358 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 Metagenome Rhizosphere
40 3300006881 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 Metagenome Rhizosphere
41 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
42 3300009174 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG Metagenome Rhizosphere
43 3300009176 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG Metagenome Rhizosphere
44 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
45 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
46 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
47 3300011119 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG Metagenome Rhizosphere
48 3300013100 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6-5 metaG Metagenome Rhizosphere
49 3300013102 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG Metagenome Rhizosphere
50 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
51 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
52 3300013296 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG Metagenome Rhizosphere
53 3300013297 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG Metagenome Rhizosphere
54 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
55 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
56 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
57 3300014326 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG Metagenome Rhizosphere
58 3300014497 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-129_1 metaG Metagenome Rhizosphere
59 3300014969 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG Metagenome Rhizosphere
60 3300015262 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-113_1 MetaG Metagenome Rhizosphere
61 3300015682 Rizhosphere microbial communities from mature sugarcane plants Campinas, Sao Paulo, Brazil - 001.1_A01 Metagenome Rhizosphere
62 3300017792 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG Metagenome Rhizosphere
63 3300025231 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mMS (SPAdes) (version 2) Metagenome Endosphere
64 3300025233 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mTSA (SPAdes) (version 2) Metagenome Endosphere
65 3300025245 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mTSA (SPAdes) (version 3) Metagenome Endosphere
66 3300025250 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mCL (SPAdes) (version 2) Metagenome Unclassified
67 3300025258 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMS (SPAdes) (version 3) Metagenome Endosphere
68 3300025261 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mCL (SPAdes) (version 2) Metagenome Endosphere
69 3300025292 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mLB_r2 (SPAdes) (version 2) Metagenome Endosphere
70 3300025294 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mLB (SPAdes) (version 2) Metagenome Endosphere
71 3300025297 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF (SPAdes) (version 2) Metagenome Endosphere
72 3300025298 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 (SPAdes) (version 2) Metagenome Endosphere
73 3300025904 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2 (SPAdes) (version 2) Metagenome Rhizosphere
74 3300025907 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
75 3300025909 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
76 3300025911 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
77 3300025912 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
78 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
79 3300025914 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
80 3300025921 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
81 3300025924 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
82 3300025931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
83 3300025932 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
84 3300025933 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
85 3300025936 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG (SPAdes) (version 2) Metagenome Rhizosphere
86 3300025938 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 (SPAdes) (version 2) Metagenome Rhizosphere
87 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
88 3300025960 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
89 3300026041 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes) (version 2) Metagenome Rhizosphere
90 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
91 3300026089 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes) (version 2) Metagenome Rhizosphere
92 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
93 3300026121 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
94 3300026142 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes) (version 2) Metagenome Rhizosphere
95 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
96 3300028577 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-21 metaG Metagenome Rhizosphere
97 3300028794 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM Metagenome Unclassified
98 3300028800 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG Metagenome Rhizosphere
99 3300030731 Rhizosphere soil microbial communities in infected wheat plant from Wellcamp field in Toowoomba, Australia - sample 3 Metagenome Rhizosphere
100 3300030742 Rhizosphere soil microbial communities in a healthy wheat plant from a non-infected Wellcamp field in Toowoomba, Australia - sample 9 Metagenome Rhizosphere
101 3300030744 Rhizosphere soil microbial communities in a healthy wheat plant from a non-infected Wellcamp field in Toowoomba, Australia - sample 7 Metagenome Rhizosphere
102 3300031548 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3 Metagenome Rhizosphere
103 3300031731 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-1 Metagenome Rhizosphere
104 3300031903 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-1 Metagenome Rhizosphere
105 3300031911 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1 Metagenome Rhizosphere
106 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
107 3300032004 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3 Metagenome Rhizosphere
108 3300033179 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 7_EM Metagenome Unclassified
109 3300033180 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 12_EM Metagenome Unclassified
110 3300036647 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J_170502JArCrA Metagenome Rhizosphere
111 3300036712 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S_170502SBrCrA Metagenome Rhizosphere
112 3300037312 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_B SG_2 Metagenome Rhizosphere
113 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
114 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
115 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
116 3300039447 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2 v2 Metagenome Rhizosphere
117 3300042005 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0512LE14Z062817_5216 Metagenome Rhizosphere
118 3300042876 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9GH_GED Metagenome Rhizosphere
119 3300044656 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA1R Metagenome Rhizosphere
120 3300044684 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC4R Metagenome Rhizosphere
121 3300044693 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC2R Metagenome Rhizosphere
122 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
123 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
124 3300046453 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co3_8_57 rhizosphere Metagenome Rhizosphere
125 3300046471 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co3_9_34 rhizosphere Metagenome Rhizosphere
126 3300046492 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co3_21_57 rhizosphere Metagenome Rhizosphere
127 3300046506 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co1_30_3 rhizosphere Metagenome Rhizosphere
128 3300046507 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co2_62_14 rhizosphere Metagenome Rhizosphere
129 3300046512 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co2_50_17 rhizosphere Metagenome Rhizosphere
130 3300046513 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-351-Co2_42_17 rhizosphere Metagenome Rhizosphere
131 3300046518 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co1_22_4 rhizosphere Metagenome Rhizosphere
132 3300046522 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 rhizosphere Metagenome Rhizosphere
133 3300046524 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co1_12_9 rhizosphere Metagenome Rhizosphere
134 3300046538 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co1_12_7 rhizosphere Metagenome Rhizosphere
135 3300046557 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL1_25_34 rhizosphere Metagenome Rhizosphere
136 3300046558 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co3_6_53 rhizosphere Metagenome Rhizosphere
137 3300046616 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co1_14_4 rhizosphere Metagenome Rhizosphere
138 3300046660 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co1_32_7 rhizosphere Metagenome Rhizosphere
139 3300046665 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co3_16_51 rhizosphere Metagenome Rhizosphere
140 3300046694 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 rhizosphere Metagenome Rhizosphere
141 3300047443 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co3_24_32 rhizosphere Metagenome Rhizosphere
142 3300047469 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co3_31_39 rhizosphere Metagenome Rhizosphere
143 3300047470 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWA-24-3-Co1_3_5 rhizosphere Metagenome Rhizosphere
144 3300047472 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co2_54_22 rhizosphere Metagenome Rhizosphere
145 3300048917 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6c N15 Metagenome Rhizoplane
146 3300048918 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6d N15 Metagenome Rhizoplane
147 3300048925 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8x unlabeled Metagenome Unclassified
148 3300048926 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8y unlabeled Metagenome Unclassified
149 3300048928 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_5e N15 Metagenome Unclassified
150 3300049460 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWA-24-3-Co2_41_10 rhizosphere Metagenome Rhizosphere
151 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
152 3300049572 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 Metagenome Rhizosphere
153 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
154 3300049663 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - I4_A_2_drought Metagenome Rhizosphere
155 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
156 3300049758 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - D15_A_3_drought Metagenome Rhizosphere
157 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
158 3300050493 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 re-annotation Metagenome Endosphere
159 3300053093 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co2_62_24 endosphere Metagenome Endosphere
160 3300053096 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co1_14_4 endosphere Metagenome Endosphere
161 3300053122 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL3_77_6 endosphere Metagenome Endosphere
162 3300053125 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL1_28_5 endosphere Metagenome Endosphere
163 2585427687 Pedobacter borealis DSM 19626 Isolate Rhizosphere
164 2599185184 Mucilaginibacter sp. NFR10 Isolate Rhizoplane
165 2738541283 Pedobacter sp. OK701 Isolate Unclassified
166 2738541284 Pedobacter sp. YR016 Isolate Unclassified
167 2738541302 Pedobacter sp. CF074 Isolate Unclassified
168 2738543023 Pedobacter sp. OK628 Isolate Unclassified
169 2739367651 Pedobacter sp. OK291 Isolate Unclassified
170 2739367656 Pedobacter sp. CF523 Isolate Unclassified
171 2739367663 Pedobacter sp. YR510 Isolate Unclassified
172 2775506987 Pedobacter ginsengisoli T01R-27 Isolate Unclassified
173 2818991437 Pedobacter terrae 518 Isolate Unclassified
174 2839989709 Pontibacter arcticus 2b14 Isolate Unclassified
175 2842722452 Pedobacter sp. R-72249 Isolate Unclassified
176 2842903701 Olivibacter sp. R-72191 Isolate Unclassified
177 2842909656 Pedobacter sp. R-72393 Isolate Unclassified
178 2849281842 Pedobacter sp. AK013 Isolate Rhizosphere
179 2852623160 Mucilaginibacter sp. AK015 Isolate Rhizosphere
180 2852627209 Pedobacter sp. AK017 Isolate Rhizosphere
181 2857627736 Pedobacter sp. R-74587 Isolate Unclassified
182 2881247448 Flavobacterium beibuense RSKm HC5 Isolate Rhizosphere
183 2881955468 Edaphocola flava HME-24 Isolate Rhizosphere
184 2884933994 Mucilaginibacter sp. 14171R-50 Isolate Rhizosphere
185 2890804823 Fluviicola sp. SGL-29 Isolate Rhizosphere
186 2895498888 Pseudoxanthomonas sp. SGD-10 Isolate Rhizosphere
187 2896344016 Sphingobacterium sp. SGL-16 Isolate Rhizosphere
188 2902048731 Pedobacter ureilyticus THG-T11 Isolate Rhizosphere
189 2904445276 Pedobacter terrae 1734 Isolate Rhizosphere
190 2919186247 Pedobacter africanus 2697 Isolate Rhizosphere
191 2919437846 Mucilaginibacter pocheonensis 3262 Isolate Rhizosphere
192 2919509842 Flavobacterium arsenatis 3773 Isolate Unclassified
193 2928078545 Mucilaginibacter rubeus 1215 Isolate Unclassified
194 2928147474 Mucilaginibacter rubeus 2025 Isolate Unclassified
195 2932082852 Mucilaginibacter sp. 3215 Isolate Rhizosphere
196 2939664404 Pedobacter africanus 2990 Isolate Rhizosphere
197 2945997725 Pedobacter sp. W3I1 Isolate Rhizosphere
198 2954016120 Flavobacterium sp. W4I14 Isolate Rhizosphere
199 2958512119 Flavobacterium sp. Sd200 Isolate Rhizosphere
200 2965320100 Flavobacterium agri MAH-1 Isolate Rhizosphere
201 2977232053 Mucilaginibacter terrae SORGH_AS 422 Isolate Unclassified

Type Distribution

Type Percentage (%)
Metagenomes 87.99
Metatranscriptomes 0.3
Isolates 11.71

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 8.41
Nodule 0
Rhizoplane 0.9
Rhizosphere 81.08
Stem 0
Stem Tuber 0
Unclassified 0.6

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0182006_1000180 3300015261 Bacteria 66625
2 SwRhRL2b_contig_136957 2162886007 Bacteria 3787
3 SwRhRL2b_contig_3607248 2162886007 Bacteria 3752
4 SwRhRL2b_contig_642379 2162886007 Bacteria 5638
5 JGI24737J22298_10003137 3300001990 Bacteria 5869
6 JGI24735J21928_10000003 3300002067 Bacteria 385983
7 JGI25162J39368_1003034 3300002737 Bacteria 5466
8 JGI25164J39214_1001442 3300002772 Bacteria 5508
9 JGI25152J39213_1000034 3300002773 Bacteria 94987
10 JGI25150J39212_1000001 3300002774 Bacteria 1318726
11 JGI25151J46595_10000001 3300003187 Bacteria 887211
12 JGI25153J46596_10000001 3300003215 Bacteria 748985
13 rootH1_10056681 3300003316 Bacteria 5278
14 rootH1_10056682 3300003316 Bacteria 4498
15 rootH2_10002321 3300003320 Bacteria 110257
16 rootH2_10208733 3300003320 Bacteria 1853
17 rootL2_10008182 3300003322 Bacteria 2435
18 rootH1_10001800 3300003323 Bacteria 72551
19 Ga0055536_1000024 3300003781 Bacteria 185534
20 Ga0055530_10005582 3300003791 Bacteria 5922
21 Ga0058863_10927834 3300004799 Bacteria 1896
22 Ga0065714_10002996 3300005288 Bacteria 11341
23 Ga0065714_10003623 3300005288 Bacteria 6518
24 Ga0065714_10008026 3300005288 Bacteria 3818
25 Ga0065714_10065033 3300005288 Bacteria 13724
26 Ga0065714_10066160 3300005288 Bacteria 7463
27 Ga0065714_10075823 3300005288 Bacteria 2861
28 Ga0065704_10000224 3300005289 Bacteria 74956
29 Ga0065704_10075815 3300005289 Bacteria 5387
30 Ga0070658_10000200 3300005327 Bacteria 52651
31 Ga0070658_10078791 3300005327 Bacteria 2705
32 Ga0070676_10002310 3300005328 Bacteria 9752
33 Ga0070689_100048188 3300005340 Bacteria 3286
34 Ga0070671_100026996 3300005355 Bacteria 4724
35 Ga0070673_100001797 3300005364 Bacteria 12796
36 Ga0070662_100000013 3300005457 Bacteria 125019
37 Ga0070681_10013968 3300005458 Bacteria 7990
38 Ga0068867_100000040 3300005459 Bacteria 78509
39 Ga0070685_10006994 3300005466 Bacteria 5757
40 Ga0068853_100014781 3300005539 Bacteria 6406
41 Ga0070672_100060094 3300005543 Bacteria 2992
42 Ga0070665_100000010 3300005548 Bacteria 529545
43 Ga0070665_100002768 3300005548 Bacteria 19006
44 Ga0068855_100000249 3300005563 Bacteria 67932
45 Ga0068855_100000856 3300005563 Bacteria 37762
46 Ga0068855_100015388 3300005563 Bacteria 9210
47 Ga0068855_100022323 3300005563 Bacteria 7583
48 Ga0068855_100043216 3300005563 Bacteria 5338
49 Ga0068855_100096536 3300005563 Bacteria 3405
50 Ga0068857_100008626 3300005577 Bacteria 8821
51 Ga0068854_100075503 3300005578 Bacteria 2475
52 Ga0068856_100000023 3300005614 Bacteria 141671
53 Ga0068856_100009673 3300005614 Bacteria 9361
54 Ga0068852_100018841 3300005616 Bacteria 5447
55 Ga0075366_10013071 3300006195 Bacteria 4721
56 Ga0075366_10028514 3300006195 Bacteria 3277
57 Ga0097621_100000011 3300006237 Bacteria 111116
58 Ga0068871_100000083 3300006358 Bacteria 53417
59 Ga0068865_100000335 3300006881 Bacteria 25989
60 Ga0105240_10000098 3300009093 Bacteria 178435
61 Ga0105240_10014441 3300009093 Bacteria 10784
62 Ga0105240_10080225 3300009093 Bacteria 4014
63 Ga0105241_10000657 3300009174 Bacteria 25953
64 Ga0105241_10006242 3300009174 Bacteria 8787
65 Ga0105241_10007201 3300009174 Bacteria 8186
66 Ga0105241_10078890 3300009174 Bacteria 2574
67 Ga0105242_10006768 3300009176 Bacteria 8840
68 Ga0105242_10210768 3300009176 Bacteria 1731
69 Ga0105237_10001062 3300009545 Bacteria 36906
70 Ga0105237_10001125 3300009545 Bacteria 35877
71 Ga0105237_10002005 3300009545 Bacteria 25911
72 Ga0105237_10005415 3300009545 Bacteria 14411
73 Ga0105237_10011528 3300009545 Bacteria 9350
74 Ga0105237_10253367 3300009545 Bacteria 1762
75 Ga0105237_10268726 3300009545 Bacteria 1708
76 Ga0105238_10002824 3300009551 Bacteria 17330
77 Ga0105239_10000007 3300010375 Bacteria 385297
78 Ga0105239_10001410 3300010375 Bacteria 32090
79 Ga0105239_10008297 3300010375 Bacteria 11837
80 Ga0105239_10015721 3300010375 Bacteria 8376
81 Ga0105239_10090633 3300010375 Bacteria 3373
82 Ga0105239_10097443 3300010375 Bacteria 3250
83 Ga0105246_10003845 3300011119 Bacteria 9105
84 Ga0157373_10003564 3300013100 Bacteria 11762
85 Ga0157373_10004594 3300013100 Bacteria 10387
86 Ga0157373_10007156 3300013100 Bacteria 8322
87 Ga0157371_10004699 3300013102 Bacteria 11802
88 Ga0157371_10009098 3300013102 Bacteria 7848
89 Ga0157371_10015739 3300013102 Bacteria 5662
90 Ga0157371_10016651 3300013102 Bacteria 5479
91 Ga0157371_10017612 3300013102 Bacteria 5301
92 Ga0157371_10142429 3300013102 Bacteria 1707
93 Ga0157370_10000531 3300013104 Bacteria 47724
94 Ga0157370_10000573 3300013104 Bacteria 45919
95 Ga0157370_10000693 3300013104 Bacteria 42077
96 Ga0157370_10018619 3300013104 Bacteria 6982
97 Ga0157370_10025653 3300013104 Bacteria 5832
98 Ga0157370_10044125 3300013104 Bacteria 4287
99 Ga0157370_10101485 3300013104 Bacteria 2695
100 Ga0157370_10124256 3300013104 Bacteria 2409
101 Ga0157369_10000402 3300013105 Bacteria 57623
102 Ga0157369_10001883 3300013105 Bacteria 25308
103 Ga0157374_10000988 3300013296 Bacteria 24642
104 Ga0157374_10001343 3300013296 Bacteria 20924
105 Ga0157378_10076986 3300013297 Bacteria 3007
106 Ga0163162_10000082 3300013306 Bacteria 86888
107 Ga0163162_10000558 3300013306 Bacteria 34481
108 Ga0163162_10016367 3300013306 Bacteria 7248
109 Ga0163162_10072381 3300013306 Bacteria 3502
110 Ga0157372_10000026 3300013307 Bacteria 195407
111 Ga0157372_10001395 3300013307 Bacteria 26028
112 Ga0157372_10001702 3300013307 Bacteria 23833
113 Ga0157372_10003174 3300013307 Bacteria 17725
114 Ga0157372_10005143 3300013307 Bacteria 13905
115 Ga0157372_10005604 3300013307 Bacteria 13351
116 Ga0157372_10010072 3300013307 Bacteria 10049
117 Ga0157375_10006520 3300013308 Bacteria 10157
118 Ga0157375_10013337 3300013308 Bacteria 7309
119 Ga0157375_10080675 3300013308 Bacteria 3292
120 Ga0157380_10000065 3300014326 Bacteria 60148
121 Ga0182008_10000006 3300014497 Bacteria 378521
122 Ga0182008_10000769 3300014497 Bacteria 22485
123 Ga0182008_10010927 3300014497 Bacteria 4842
124 Ga0182008_10025545 3300014497 Bacteria 2999
125 Ga0182008_10042647 3300014497 Bacteria 2260
126 Ga0182008_10046755 3300014497 Bacteria 2151
127 Ga0157376_10111210 3300014969 Bacteria 2412
128 Ga0182006_1000361 3300015261 Bacteria 37999
129 Ga0182006_1002059 3300015261 Bacteria 11276
130 Ga0182006_1003500 3300015261 Bacteria 8008
131 Ga0182006_1011700 3300015261 Bacteria 3855
132 Ga0182006_1039877 3300015261 Bacteria 1851
133 Ga0182007_10000033 3300015262 Bacteria 139808
134 Ga0182007_10001529 3300015262 Bacteria 12365
135 Ga0182007_10013450 3300015262 Bacteria 3121
136 Ga0183373_1001 3300015682 Bacteria 1410374
137 Ga0163161_10000085 3300017792 Bacteria 93534
138 Ga0163161_10011757 3300017792 Bacteria 6070
139 Ga0163161_10020457 3300017792 Bacteria 4643
140 Ga0163161_10028042 3300017792 Bacteria 3997
141 Ga0163161_10056884 3300017792 Bacteria 2841
142 Ga0207427_100137 3300025231 Bacteria 88182
143 Ga0209437_100112 3300025233 Bacteria 214292
144 Ga0209437_100143 3300025233 Bacteria 164970
145 Ga0207425_1000002 3300025245 Bacteria 1362590
146 Ga0209026_1000490 3300025250 Bacteria 28944
147 Ga0209129_1000002 3300025258 Bacteria 1359086
148 Ga0209233_1000126 3300025261 Bacteria 214298
149 Ga0209233_1017793 3300025261 Bacteria 1927
150 Ga0209676_1000008 3300025292 Bacteria 991778
151 Ga0209025_1000004 3300025294 Bacteria 1361782
152 Ga0209758_1000006 3300025297 Bacteria 1359562
153 Ga0209050_1000055 3300025298 Bacteria 339254
154 Ga0207647_10000035 3300025904 Bacteria 99177
155 Ga0207647_10000742 3300025904 Bacteria 25591
156 Ga0207645_10000842 3300025907 Bacteria 25583
157 Ga0207705_10000257 3300025909 Bacteria 51549
158 Ga0207654_10001575 3300025911 Bacteria 11979
159 Ga0207707_10010248 3300025912 Bacteria 8135
160 Ga0207695_10000048 3300025913 Bacteria 421800
161 Ga0207695_10001625 3300025913 Bacteria 36435
162 Ga0207695_10050169 3300025913 Bacteria 4392
163 Ga0207695_10236032 3300025913 Bacteria 1731
164 Ga0207671_10000025 3300025914 Bacteria 271617
165 Ga0207671_10001589 3300025914 Bacteria 25825
166 Ga0207671_10002839 3300025914 Bacteria 18011
167 Ga0207671_10003081 3300025914 Bacteria 17014
168 Ga0207671_10004126 3300025914 Bacteria 14043
169 Ga0207671_10008197 3300025914 Bacteria 8905
170 Ga0207671_10010726 3300025914 Bacteria 7533
171 Ga0207652_10027397 3300025921 Bacteria 4749
172 Ga0207694_10058058 3300025924 Bacteria 3010
173 Ga0207644_10008314 3300025931 Bacteria 6801
174 Ga0207690_10000519 3300025932 Bacteria 25069
175 Ga0207706_10000454 3300025933 Bacteria 43636
176 Ga0207670_10034104 3300025936 Bacteria 3286
177 Ga0207704_10000019 3300025938 Bacteria 152734
178 Ga0207667_10000095 3300025949 Bacteria 143866
179 Ga0207667_10002951 3300025949 Bacteria 21107
180 Ga0207667_10022944 3300025949 Bacteria 6880
181 Ga0207667_10037419 3300025949 Bacteria 5186
182 Ga0207667_10109596 3300025949 Bacteria 2847
183 Ga0207667_10136260 3300025949 Bacteria 2528
184 Ga0207651_10000923 3300025960 Bacteria 12942
185 Ga0207639_10024912 3300026041 Bacteria 4335
186 Ga0207639_10178396 3300026041 Bacteria 1805
187 Ga0207702_10000258 3300026078 Bacteria 61221
188 Ga0207702_10033381 3300026078 Bacteria 4299
189 Ga0207648_10000220 3300026089 Bacteria 61703
190 Ga0207674_10017303 3300026116 Bacteria 7865
191 Ga0207683_10012722 3300026121 Bacteria 7180
192 Ga0207698_10003241 3300026142 Bacteria 9770
193 Ga0207698_10006709 3300026142 Bacteria 7192
194 Ga0268266_10000032 3300028379 Bacteria 395079
195 Ga0265318_10008455 3300028577 Bacteria 4581
196 Ga0307515_10031774 3300028794 Bacteria 8778
197 Ga0307515_10034033 3300028794 Bacteria 8363
198 Ga0265338_10030282 3300028800 Bacteria 5337
199 Ga0316177_1019498 3300030731 Bacteria 7221
200 Ga0316183_1115618 3300030742 Bacteria 53789
201 Ga0316181_1088948 3300030744 Bacteria 14104
202 Ga0307408_100001461 3300031548 Bacteria 17549
203 Ga0307408_100004451 3300031548 Bacteria 9515
204 Ga0307408_100014380 3300031548 Bacteria 5257
205 Ga0307405_10000003 3300031731 Bacteria 569064
206 Ga0307407_10000010 3300031903 Bacteria 186970
207 Ga0307412_10000055 3300031911 Bacteria 147100
208 Ga0307416_100000014 3300032002 Bacteria 249053
209 Ga0307414_10005858 3300032004 Bacteria 6797
210 Ga0307414_10018637 3300032004 Bacteria 4280
211 Ga0307414_10033054 3300032004 Bacteria 3414
212 Ga0307414_10068691 3300032004 Bacteria 2544
213 Ga0307507_10000883 3300033179 Bacteria 66623
214 Ga0307510_10001525 3300033180 Bacteria 25537
215 Ga0316582_0071073 3300036647 Unclassified 2253
216 Ga0316584_0000768 3300036712 Bacteria 17907
217 Ga0316584_0004808 3300036712 Bacteria 8973
218 Ga0316584_0075625 3300036712 Bacteria 2524
219 Ga0395899_0000055 3300037312 Bacteria 220579
220 Ga0395899_0025119 3300037312 Bacteria 4499
221 Ga0395900_0001045 3300037418 Bacteria 35498
222 Ga0395900_0017047 3300037418 Bacteria 7416
223 Ga0395900_0030286 3300037418 Bacteria 5555
224 Ga0395905_0000001 3300037471 Bacteria 2037079
225 Ga0395905_0000355 3300037471 Bacteria 65176
226 Ga0395905_0012756 3300037471 Bacteria 8083
227 Ga0395901_0003761 3300038443 Bacteria 15293
228 Ga0395901_0038141 3300038443 Bacteria 4970
229 Ga0436361_0958779 3300039447 Bacteria 5168
230 Ga0439448_0006983 3300042005 Bacteria 3257
231 Ga0451577_0000249 3300042876 Bacteria 106109
232 Ga0466969_0010051 3300044656 Bacteria 5019
233 Ga0466966_0017619 3300044684 Bacteria 4717
234 Ga0466961_0057880 3300044693 Bacteria 2466
235 Ga0453684_0030203 3300044712 Bacteria 7663
236 Ga0453684_0043751 3300044712 Bacteria 6010
237 Ga0451576_0056265 3300045051 Bacteria 4114
238 Ga0451576_0087155 3300045051 Unclassified 3247
239 Ga0495627_002586 3300046453 Bacteria 8556
240 Ga0495650_0000107 3300046471 Bacteria 200864
241 Ga0495585_0000014 3300046492 Bacteria 187513
242 Ga0495585_0004806 3300046492 Bacteria 8681
243 Ga0495583_0026876 3300046506 Bacteria 2847
244 Ga0495606_0000192 3300046507 Bacteria 107123
245 Ga0495606_0004518 3300046507 Bacteria 13848
246 Ga0495606_0071036 3300046507 Bacteria 2193
247 Ga0495610_0000051 3300046512 Bacteria 143715
248 Ga0495610_0006214 3300046512 Bacteria 8286
249 Ga0495610_0006245 3300046512 Bacteria 8261
250 Ga0495616_0000777 3300046513 Bacteria 23331
251 Ga0495616_0005597 3300046513 Bacteria 7690
252 Ga0495631_0002772 3300046518 Bacteria 9720
253 Ga0495643_0000586 3300046522 Bacteria 44354
254 Ga0495648_0006785 3300046524 Bacteria 9257
255 Ga0495609_0003482 3300046538 Bacteria 8997
256 Ga0495622_0051289 3300046557 Bacteria 1914
257 Ga0495633_0000015 3300046558 Bacteria 254484
258 Ga0495633_0001632 3300046558 Bacteria 16924
259 Ga0495668_0000041 3300046616 Bacteria 229462
260 Ga0495625_0000021 3300046660 Bacteria 282133
261 Ga0495625_0001041 3300046660 Bacteria 36452
262 Ga0495625_0002514 3300046660 Bacteria 19739
263 Ga0495625_0016836 3300046660 Bacteria 5740
264 Ga0495625_0065963 3300046660 Bacteria 2551
265 Ga0495661_0021734 3300046665 Bacteria 4178
266 Ga0495661_0030471 3300046665 Bacteria 3435
267 Ga0495661_0062548 3300046665 Bacteria 2204
268 Ga0495649_0000009 3300046694 Bacteria 451725
269 Ga0495687_003296 3300047443 Bacteria 11866
270 Ga0495673_0012814 3300047469 Bacteria 4426
271 Ga0495681_0031108 3300047470 Bacteria 2708
272 Ga0495686_0000220 3300047472 Bacteria 104967
273 Ga0495686_0002322 3300047472 Bacteria 18183
274 Ga0495686_0051356 3300047472 Bacteria 2587
275 Ga0496114_0001368 3300048917 Bacteria 18465
276 Ga0496115_0014236 3300048918 Bacteria 6020
277 Ga0496122_0000404 3300048925 Bacteria 91618
278 Ga0496123_0002530 3300048926 Bacteria 22414
279 Ga0496125_0000761 3300048928 Bacteria 52765
280 Ga0495682_0005711 3300049460 Bacteria 5137
281 Ga0501034_0055080 3300049571 Bacteria 4003
282 Ga0501036_0014050 3300049572 Bacteria 6655
283 Ga0501047_0026163 3300049581 Bacteria 5613
284 Ga0501223_000184 3300049663 Bacteria 16387
285 Ga0501080_0019092 3300049742 Bacteria 6347
286 Ga0501241_004103 3300049758 Bacteria 2737
287 Ga0501035_0003585 3300049822 Bacteria 14829
288 nmdc:mga0k408_1529_c1 3300050493 Bacteria 12494
289 nmdc:mga0k408_2059_c2 3300050493 Bacteria 7365
290 Ga0500651_0000279 3300053093 Bacteria 30029
291 Ga0500641_0000988 3300053096 Bacteria 10100
292 Ga0500608_002452 3300053122 Bacteria 6747
293 Ga0500608_035695 3300053122 Bacteria 2371
294 Ga0500618_000050 3300053125 Bacteria 105238
295 2586209578 2585427687 Bacteria 5544917
296 2599479576 2599185184 Bacteria 6430550
297 2738756958 2738541283 Bacteria 7222293
298 2738760267 2738541284 Bacteria 5199923
299 2738852126 2738541302 Bacteria 5944758
300 2739302389 2738543023 Bacteria 6767879
301 2739589698 2739367651 Bacteria 6359826
302 2739616480 2739367656 Bacteria 5152243
303 2739647127 2739367663 Bacteria 5040914
304 2776612317 2775506987 Bacteria 5373360
305 2819546664 2818991437 Bacteria 5805520
306 2839992406 2839989709 Bacteria 3773432
307 2842725359 2842722452 Bacteria 6263924
308 2842907765 2842903701 Bacteria 6986368
309 2842912636 2842909656 Bacteria 6185908
310 2849281894 2849281842 Bacteria 6065644
311 2852625189 2852623160 Bacteria 4376875
312 2852631431 2852627209 Bacteria 5896285
313 2857629605 2857627736 Bacteria 5625397
314 2881250652 2881247448 Bacteria 3717788
315 2881956649 2881955468 Bacteria 3545609
316 2884934204 2884933994 Bacteria 4535041
317 2890805168 2890804823 Bacteria 3717572
318 2895502154 2895498888 Bacteria 5283788
319 2896345181 2896344016 Bacteria 3811746
320 2902052347 2902048731 Bacteria 4976191
321 2904446802 2904445276 Bacteria 5310396
322 2919189539 2919186247 Bacteria 6244071
323 2919438134 2919437846 Bacteria 6199444
324 2919510288 2919509842 Bacteria 4104664
325 2928083872 2928078545 Bacteria 6534839
326 2928152313 2928147474 Bacteria 6512076
327 2932084877 2932082852 Bacteria 6563563
328 2939667765 2939664404 Bacteria 6364494
329 2946002276 2945997725 Bacteria 6404843
330 2954019175 2954016120 Bacteria 6446024
331 2958514060 2958512119 Bacteria 4528530
332 2965322866 2965320100 Bacteria 3975600
333 2977233838 2977232053 Bacteria 5485925
334 Ga0182006_1000180
335 SwRhRL2b_contig_136957
336 SwRhRL2b_contig_3607248
337 SwRhRL2b_contig_642379
338 JGI24737J22298_10003137
339 JGI24735J21928_10000003
340 JGI25162J39368_1003034
341 JGI25164J39214_1001442
342 JGI25152J39213_1000034
343 JGI25150J39212_1000001
344 JGI25151J46595_10000001
345 JGI25153J46596_10000001
346 rootH1_10056681
347 rootH1_10056682
348 rootH2_10002321
349 rootH2_10208733
350 rootL2_10008182
351 rootH1_10001800
352 Ga0055536_1000024
353 Ga0055530_10005582
354 Ga0058863_10927834
355 Ga0065714_10002996
356 Ga0065714_10003623
357 Ga0065714_10008026
358 Ga0065714_10065033
359 Ga0065714_10066160
360 Ga0065714_10075823
361 Ga0065704_10000224
362 Ga0065704_10075815
363 Ga0070658_10000200
364 Ga0070658_10078791
365 Ga0070676_10002310
366 Ga0070689_100048188
367 Ga0070671_100026996
368 Ga0070673_100001797
369 Ga0070662_100000013
370 Ga0070681_10013968
371 Ga0068867_100000040
372 Ga0070685_10006994
373 Ga0068853_100014781
374 Ga0070672_100060094
375 Ga0070665_100000010
376 Ga0070665_100002768
377 Ga0068855_100000249
378 Ga0068855_100000856
379 Ga0068855_100015388
380 Ga0068855_100022323
381 Ga0068855_100043216
382 Ga0068855_100096536
383 Ga0068857_100008626
384 Ga0068854_100075503
385 Ga0068856_100000023
386 Ga0068856_100009673
387 Ga0068852_100018841
388 Ga0075366_10013071
389 Ga0075366_10028514
390 Ga0097621_100000011
391 Ga0068871_100000083
392 Ga0068865_100000335
393 Ga0105240_10000098
394 Ga0105240_10014441
395 Ga0105240_10080225
396 Ga0105241_10000657
397 Ga0105241_10006242
398 Ga0105241_10007201
399 Ga0105241_10078890
400 Ga0105242_10006768
401 Ga0105242_10210768
402 Ga0105237_10001062
403 Ga0105237_10001125
404 Ga0105237_10002005
405 Ga0105237_10005415
406 Ga0105237_10011528
407 Ga0105237_10253367
408 Ga0105237_10268726
409 Ga0105238_10002824
410 Ga0105239_10000007
411 Ga0105239_10001410
412 Ga0105239_10008297
413 Ga0105239_10015721
414 Ga0105239_10090633
415 Ga0105239_10097443
416 Ga0105246_10003845
417 Ga0157373_10003564
418 Ga0157373_10004594
419 Ga0157373_10007156
420 Ga0157371_10004699
421 Ga0157371_10009098
422 Ga0157371_10015739
423 Ga0157371_10016651
424 Ga0157371_10017612
425 Ga0157371_10142429
426 Ga0157370_10000531
427 Ga0157370_10000573
428 Ga0157370_10000693
429 Ga0157370_10018619
430 Ga0157370_10025653
431 Ga0157370_10044125
432 Ga0157370_10101485
433 Ga0157370_10124256
434 Ga0157369_10000402
435 Ga0157369_10001883
436 Ga0157374_10000988
437 Ga0157374_10001343
438 Ga0157378_10076986
439 Ga0163162_10000082
440 Ga0163162_10000558
441 Ga0163162_10016367
442 Ga0163162_10072381
443 Ga0157372_10000026
444 Ga0157372_10001395
445 Ga0157372_10001702
446 Ga0157372_10003174
447 Ga0157372_10005143
448 Ga0157372_10005604
449 Ga0157372_10010072
450 Ga0157375_10006520
451 Ga0157375_10013337
452 Ga0157375_10080675
453 Ga0157380_10000065
454 Ga0182008_10000006
455 Ga0182008_10000769
456 Ga0182008_10010927
457 Ga0182008_10025545
458 Ga0182008_10042647
459 Ga0182008_10046755
460 Ga0157376_10111210
461 Ga0182006_1000361
462 Ga0182006_1002059
463 Ga0182006_1003500
464 Ga0182006_1011700
465 Ga0182006_1039877
466 Ga0182007_10000033
467 Ga0182007_10001529
468 Ga0182007_10013450
469 Ga0183373_1001
470 Ga0163161_10000085
471 Ga0163161_10011757
472 Ga0163161_10020457
473 Ga0163161_10028042
474 Ga0163161_10056884
475 Ga0207427_100137
476 Ga0209437_100112
477 Ga0209437_100143
478 Ga0207425_1000002
479 Ga0209026_1000490
480 Ga0209129_1000002
481 Ga0209233_1000126
482 Ga0209233_1017793
483 Ga0209676_1000008
484 Ga0209025_1000004
485 Ga0209758_1000006
486 Ga0209050_1000055
487 Ga0207647_10000035
488 Ga0207647_10000742
489 Ga0207645_10000842
490 Ga0207705_10000257
491 Ga0207654_10001575
492 Ga0207707_10010248
493 Ga0207695_10000048
494 Ga0207695_10001625
495 Ga0207695_10050169
496 Ga0207695_10236032
497 Ga0207671_10000025
498 Ga0207671_10001589
499 Ga0207671_10002839
500 Ga0207671_10003081
501 Ga0207671_10004126
502 Ga0207671_10008197
503 Ga0207671_10010726
504 Ga0207652_10027397
505 Ga0207694_10058058
506 Ga0207644_10008314
507 Ga0207690_10000519
508 Ga0207706_10000454
509 Ga0207670_10034104
510 Ga0207704_10000019
511 Ga0207667_10000095
512 Ga0207667_10002951
513 Ga0207667_10022944
514 Ga0207667_10037419
515 Ga0207667_10109596
516 Ga0207667_10136260
517 Ga0207651_10000923
518 Ga0207639_10024912
519 Ga0207639_10178396
520 Ga0207702_10000258
521 Ga0207702_10033381
522 Ga0207648_10000220
523 Ga0207674_10017303
524 Ga0207683_10012722
525 Ga0207698_10003241
526 Ga0207698_10006709
527 Ga0268266_10000032
528 Ga0265318_10008455
529 Ga0307515_10031774
530 Ga0307515_10034033
531 Ga0265338_10030282
532 Ga0316177_1019498
533 Ga0316183_1115618
534 Ga0316181_1088948
535 Ga0307408_100001461
536 Ga0307408_100004451
537 Ga0307408_100014380
538 Ga0307405_10000003
539 Ga0307407_10000010
540 Ga0307412_10000055
541 Ga0307416_100000014
542 Ga0307414_10005858
543 Ga0307414_10018637
544 Ga0307414_10033054
545 Ga0307414_10068691
546 Ga0307507_10000883
547 Ga0307510_10001525
548 Ga0316582_0071073
549 Ga0316584_0000768
550 Ga0316584_0004808
551 Ga0316584_0075625
552 Ga0395899_0000055
553 Ga0395899_0025119
554 Ga0395900_0001045
555 Ga0395900_0017047
556 Ga0395900_0030286
557 Ga0395905_0000001
558 Ga0395905_0000355
559 Ga0395905_0012756
560 Ga0395901_0003761
561 Ga0395901_0038141
562 Ga0436361_0958779
563 Ga0439448_0006983
564 Ga0451577_0000249
565 Ga0466969_0010051
566 Ga0466966_0017619
567 Ga0466961_0057880
568 Ga0453684_0030203
569 Ga0453684_0043751
570 Ga0451576_0056265
571 Ga0451576_0087155
572 Ga0495627_002586
573 Ga0495650_0000107
574 Ga0495585_0000014
575 Ga0495585_0004806
576 Ga0495583_0026876
577 Ga0495606_0000192
578 Ga0495606_0004518
579 Ga0495606_0071036
580 Ga0495610_0000051
581 Ga0495610_0006214
582 Ga0495610_0006245
583 Ga0495616_0000777
584 Ga0495616_0005597
585 Ga0495631_0002772
586 Ga0495643_0000586
587 Ga0495648_0006785
588 Ga0495609_0003482
589 Ga0495622_0051289
590 Ga0495633_0000015
591 Ga0495633_0001632
592 Ga0495668_0000041
593 Ga0495625_0000021
594 Ga0495625_0001041
595 Ga0495625_0002514
596 Ga0495625_0016836
597 Ga0495625_0065963
598 Ga0495661_0021734
599 Ga0495661_0030471
600 Ga0495661_0062548
601 Ga0495649_0000009
602 Ga0495687_003296
603 Ga0495673_0012814
604 Ga0495681_0031108
605 Ga0495686_0000220
606 Ga0495686_0002322
607 Ga0495686_0051356
608 Ga0496114_0001368
609 Ga0496115_0014236
610 Ga0496122_0000404
611 Ga0496123_0002530
612 Ga0496125_0000761
613 Ga0495682_0005711
614 Ga0501034_0055080
615 Ga0501036_0014050
616 Ga0501047_0026163
617 Ga0501223_000184
618 Ga0501080_0019092
619 Ga0501241_004103
620 Ga0501035_0003585
621 nmdc:mga0k408_1529_c1
622 nmdc:mga0k408_2059_c2
623 Ga0500651_0000279
624 Ga0500641_0000988
625 Ga0500608_002452
626 Ga0500608_035695
627 Ga0500618_000050
628 2586209578
629 2599479576
630 2738756958
631 2738760267
632 2738852126
633 2739302389
634 2739589698
635 2739616480
636 2739647127
637 2776612317
638 2819546664
639 2839992406
640 2842725359
641 2842907765
642 2842912636
643 2849281894
644 2852625189
645 2852631431
646 2857629605
647 2881250652
648 2881956649
649 2884934204
650 2890805168
651 2895502154
652 2896345181
653 2902052347
654 2904446802
655 2919189539
656 2919438134
657 2919510288
658 2928083872
659 2928152313
660 2932084877
661 2939667765
662 2946002276
663 2954019175
664 2958514060
665 2965322866
666 2977233838

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF08245

Mur_ligase_M

Mur ligase middle domain

126

322

0.95

PF02875

Mur_ligase_C

Mur ligase, glutamate ligase domain

344

474

0.94

PF01225

Mur_ligase

Mur ligase family, catalytic domain

39

114

0.93

Structural Annotation

Top 5 Hits

ID Description Score Start End
4bub-assembly1.cif.gz_A crystal structure of mure ligase from thermotoga maritima in complex with adp 0.915 12 484
4c12-assembly1.cif.gz_A x-ray crystal structure of staphylococcus aureus mure with udp-murnac- ala-glu-lys and adp 0.9105 1 483
4c12-assembly1.cif.gz_A x-ray crystal structure of staphylococcus aureus mure with udp-murnac- ala-glu-lys and adp 0.9051 1 483
1e8c-assembly1.cif.gz_A structure of mure the udp-n-acetylmuramyl tripeptide synthetase from e. coli 0.887 18 482
2xja-assembly1.cif.gz_A structure of mure from m.tuberculosis with dipeptide and adp 0.8856 1 485
ID Description Score Start End Superfamily
4c13A02 Alpha Beta;3-Layer(aba) Sandwich;UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase;Mur-like, catalytic domain 0.9611 100 328 3.40.1190.10
4c12A03 Alpha Beta;Alpha-Beta Complex;Protein-Tyrosine Phosphatase; Chain A;Mur ligase, C-terminal domain 0.9487 338 483 3.90.190.20
1e8cB03 Alpha Beta;Alpha-Beta Complex;Protein-Tyrosine Phosphatase; Chain A;Mur ligase, C-terminal domain 0.9392 330 474 3.90.190.20
2wtzA03 Alpha Beta;Alpha-Beta Complex;Protein-Tyrosine Phosphatase; Chain A;Mur ligase, C-terminal domain 0.9364 328 485 3.90.190.20
4c13A01 Alpha Beta;3-Layer(aba) Sandwich;Udp-n-acetylmuramoylalanyl-d-glutamate--2,6- Diaminopimelate Ligase; Chain: A, domain 1;MurE/MurF, N-terminal domain 0.936 1 94 3.40.1390.10
ID Description Score Start End GO Terms
AF-A0A3D4BQ75-F1-model_v4 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase 0.9914 1 353 GO:0005524
GO:0005737
GO:0008360
GO:0009252
GO:0016881
GO:0051301
AF-A0A519VWA6-F1-model_v4 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase 0.9881 1 89 GO:0009058
GO:0016881
AF-A0A3D4BQ75-F1-model_v4 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase 0.9859 1 353 GO:0005524
GO:0005737
GO:0008360
GO:0009252
GO:0016881
GO:0051301
AF-K1UK52-F1-model_v4 UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase 0.9856 235 445 GO:0005524
GO:0009058
GO:0016881
AF-A0A3D0FMH2-F1-model_v4 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase 0.9848 1 242 GO:0005524
GO:0005737
GO:0008360
GO:0009058
GO:0016881
GO:0051301

Map