F412229

General Info

Members Datasets Scaffolds Average Seq Length
335 221 671 332

Family's Representative Sequence

Representative Sequence 3300009545|Ga0105237_10003306|Ga0105237_1000330613
Length 355
Sequence LGQKNIFLPIFLTHIFDAQNIVGMSVEKILNDWKKLKFKPVYWLEGEEEFYIDQLVNYAEHKILSEAEAGFNLTVFYGKDADWTAVINACRRYPMFAERQVVLLKEAQQMRDIDKLEAYIDKPLSSTVFVVAYKEKKVDGRSKLAKMLKEKAELYTAKKLYDNQLPEWTSELIRGKGYEITQKALLLLVDHIGNDLSRINNEIEKLLVNLAGRKNITEDDIERYVGVSKEYNVFELQDAFAKKDRVKAIRIIQYFESNPKAAPIQLILPSIYNFFSKAYMIFGQPARDEKGVAAAIGVNPFFVKDYLAAVRNYNYEGIENGLLLLHAYNLKSVGVGSAGTEDASLLKELVVKMMI

Samples

Sample ID Description Type Environment
1 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
2 2162886011 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Rhizosphere Soil Replicate 1: eDNA_1 v2 (version 2) Metagenome Rhizosphere
3 2162886012 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Bulk Soil Replicate 1 : eDNA_1 v1 Metagenome Rhizosphere
4 3300001979 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6 Metagenome Rhizosphere
5 3300001989 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5 Metagenome Rhizosphere
6 3300002738 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mTSA Metagenome Unclassified
7 3300002741 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mCL Metagenome Unclassified
8 3300003215 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF Metagenome Endosphere
9 3300003316 Sugarcane root Sample L1 Metagenome Unclassified
10 3300003320 Sugarcane root Sample H2 Metagenome Unclassified
11 3300003322 Sugarcane root Sample L2 Metagenome Unclassified
12 3300003323 Sugarcane root Sample H1 Metagenome Unclassified
13 3300003354 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMS Metagenome Endosphere
14 3300003761 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mTSA_r2 Metagenome Endosphere
15 3300003762 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mMF_r2 Metagenome Endosphere
16 3300003790 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMS_r2 Metagenome Endosphere
17 3300003791 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 Metagenome Endosphere
18 3300003794 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 Metagenome Endosphere
19 3300005262 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMF (version 2) (version 3) Metagenome Endosphere
20 3300005290 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Rhizosphere Soil Replicate 1: eDNA_1 v3 (version 3) Metagenome Rhizosphere
21 3300005293 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Bulk Soil Replicate 1 : eDNA_1 v2 (version 2) Metagenome Rhizosphere
22 3300005295 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL3 v2 (version 2) Metagenome Rhizosphere
23 3300005328 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG Metagenome Rhizosphere
24 3300005329 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG Metagenome Rhizosphere
25 3300005331 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG Metagenome Rhizosphere
26 3300005334 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 Metagenome Rhizosphere
27 3300005335 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG Metagenome Rhizosphere
28 3300005338 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 Metagenome Rhizosphere
29 3300005339 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG Metagenome Rhizosphere
30 3300005340 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG Metagenome Rhizosphere
31 3300005341 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-1 metaG Metagenome Rhizosphere
32 3300005345 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-2 metaG Metagenome Rhizosphere
33 3300005354 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG Metagenome Rhizosphere
34 3300005355 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG Metagenome Rhizosphere
35 3300005364 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG Metagenome Rhizosphere
36 3300005365 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3H metaG Metagenome Rhizosphere
37 3300005366 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG Metagenome Rhizosphere
38 3300005367 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG Metagenome Rhizosphere
39 3300005456 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG Metagenome Rhizosphere
40 3300005457 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG Metagenome Rhizosphere
41 3300005458 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG Metagenome Rhizosphere
42 3300005459 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 Metagenome Rhizosphere
43 3300005471 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG Metagenome Rhizosphere
44 3300005530 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG Metagenome Rhizosphere
45 3300005535 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG Metagenome Rhizosphere
46 3300005539 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 Metagenome Rhizosphere
47 3300005543 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG Metagenome Rhizosphere
48 3300005544 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3L metaG Metagenome Rhizosphere
49 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
50 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
51 3300005564 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG Metagenome Rhizosphere
52 3300005577 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 Metagenome Rhizosphere
53 3300005578 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 Metagenome Rhizosphere
54 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
55 3300005616 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 Metagenome Rhizosphere
56 3300005617 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 Metagenome Rhizosphere
57 3300005719 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 Metagenome Rhizosphere
58 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
59 3300005844 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 Metagenome Rhizosphere
60 3300006195 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 Metagenome Endosphere
61 3300006237 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2) (version 2) Metagenome Rhizosphere
62 3300006353 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 Metagenome Endosphere
63 3300006358 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 Metagenome Rhizosphere
64 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
65 3300006846 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 Metagenome Rhizosphere
66 3300006847 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 Metagenome Rhizosphere
67 3300006880 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 Metagenome Rhizosphere
68 3300006931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 (version 2) (version 2) Metagenome Rhizosphere
69 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
70 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
71 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
72 3300009174 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG Metagenome Rhizosphere
73 3300009176 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG Metagenome Rhizosphere
74 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
75 3300009553 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG Metagenome Rhizosphere
76 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
77 3300013100 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6-5 metaG Metagenome Rhizosphere
78 3300013102 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG Metagenome Rhizosphere
79 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
80 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
81 3300013296 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG Metagenome Rhizosphere
82 3300013297 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG Metagenome Rhizosphere
83 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
84 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
85 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
86 3300014325 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG Metagenome Rhizosphere
87 3300014326 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG Metagenome Rhizosphere
88 3300014745 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M5-5 metaG Metagenome Rhizosphere
89 3300014968 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG Metagenome Rhizosphere
90 3300014969 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG Metagenome Rhizosphere
91 3300015265 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-103_1 MetaG Metagenome Rhizosphere
92 3300017792 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG Metagenome Rhizosphere
93 3300025208 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mTSA (SPAdes) (version 2) Metagenome Endosphere
94 3300025242 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mTSA_r2 (SPAdes) (version 2) Metagenome Endosphere
95 3300025246 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mTSA (SPAdes) (version 2) Metagenome Unclassified
96 3300025250 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mCL (SPAdes) (version 2) Metagenome Unclassified
97 3300025254 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mMF_r2 (SPAdes) (version 2) Metagenome Endosphere
98 3300025273 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMS_r2 (SPAdes) (version 3) Metagenome Endosphere
99 3300025284 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mLB (SPAdes) (version 2) Metagenome Endosphere
100 3300025295 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMF_r2 (SPAdes) (version 3) Metagenome Endosphere
101 3300025297 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF (SPAdes) (version 2) Metagenome Endosphere
102 3300025298 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 (SPAdes) (version 2) Metagenome Endosphere
103 3300025302 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMS (SPAdes) (version 2) Metagenome Endosphere
104 3300025303 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mMS_r2 (SPAdes) (version 2) Metagenome Endosphere
105 3300025304 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
106 3300025903 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
107 3300025904 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2 (SPAdes) (version 2) Metagenome Rhizosphere
108 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
109 3300025914 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
110 3300025917 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
111 3300025921 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
112 3300025924 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
113 3300025925 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
114 3300025926 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
115 3300025932 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
116 3300025933 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
117 3300025940 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
118 3300025942 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes) (version 2) Metagenome Rhizosphere
119 3300025944 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
120 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
121 3300025960 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
122 3300025961 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
123 3300026023 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 (SPAdes) (version 2) Metagenome Rhizosphere
124 3300026041 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes) (version 2) Metagenome Rhizosphere
125 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
126 3300026089 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes) (version 2) Metagenome Rhizosphere
127 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
128 3300026118 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes) (version 2) Metagenome Rhizosphere
129 3300026121 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
130 3300026142 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes) (version 2) Metagenome Rhizosphere
131 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
132 3300028381 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) Metagenome Rhizosphere
133 3300028786 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 23_EM Metagenome Unclassified
134 3300029957 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-14-19 metaG Metagenome Rhizosphere
135 3300030521 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 13_EM Metagenome Unclassified
136 3300031251 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-21 metaG Metagenome Rhizosphere
137 3300031507 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 10_EM Metagenome Unclassified
138 3300031730 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 19_EM Metagenome Unclassified
139 3300032005 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-1 Metagenome Rhizosphere
140 3300033180 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 12_EM Metagenome Unclassified
141 3300037312 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_B SG_2 Metagenome Rhizosphere
142 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
143 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
144 3300041404 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0216DE14Z070717_5272 Metagenome Rhizosphere
145 3300041406 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0503DE14Z070717_5284 Metagenome Rhizosphere
146 3300041410 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0116DE14Z082817_5596 Metagenome Rhizosphere
147 3300041459 Perennial ryegrass root microbial community from Lincoln, Canterbury, New Zealand - RGR18_11 MetaG Metagenome Rhizoplane
148 3300041997 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0317DE14Z082817_5607 Metagenome Rhizosphere
149 3300042001 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0512LE14Z081617_5542 Metagenome Rhizosphere
150 3300042003 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0821FE14Z081617_5551 Metagenome Rhizosphere
151 3300042004 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0612WE14Z082817_5619 Metagenome Rhizosphere
152 3300042007 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0612DE14Z070717_5290 Metagenome Rhizosphere
153 3300042014 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0216WE14Z070717_5275 Metagenome Rhizosphere
154 3300042015 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0503WE14Z070717_5287 Metagenome Rhizosphere
155 3300042131 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - SB0225D_E14_070716_130 Metagenome Rhizosphere
156 3300042134 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0627W_E14_070716_126 Metagenome Rhizosphere
157 3300044658 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC1R Metagenome Rhizosphere
158 3300044706 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA3R Metagenome Rhizosphere
159 3300044765 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA2R Metagenome Rhizosphere
160 3300044842 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA2R Metagenome Rhizosphere
161 3300045049 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC3R Metagenome Rhizosphere
162 3300046453 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co3_8_57 rhizosphere Metagenome Rhizosphere
163 3300046460 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co3_31_37 rhizosphere Metagenome Rhizosphere
164 3300046524 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co1_12_9 rhizosphere Metagenome Rhizosphere
165 3300046558 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co3_6_53 rhizosphere Metagenome Rhizosphere
166 3300046616 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co1_14_4 rhizosphere Metagenome Rhizosphere
167 3300046648 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co3_15_40 rhizosphere Metagenome Rhizosphere
168 3300047320 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co2_68_28 rhizosphere Metagenome Rhizosphere
169 3300047443 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co3_24_32 rhizosphere Metagenome Rhizosphere
170 3300047472 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co2_54_22 rhizosphere Metagenome Rhizosphere
171 3300048904 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7w unlabeled Metagenome Rhizoplane
172 3300048917 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6c N15 Metagenome Rhizoplane
173 3300048924 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_3e N15 Metagenome Unclassified
174 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
175 3300049569 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_02 Metagenome Rhizosphere
176 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
177 3300049572 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 Metagenome Rhizosphere
178 3300049575 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_03 Metagenome Rhizosphere
179 3300049579 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 Metagenome Rhizosphere
180 3300049580 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_01 Metagenome Rhizosphere
181 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
182 3300049582 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_03 Metagenome Rhizosphere
183 3300049586 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 Metagenome Rhizosphere
184 3300049590 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_02 Metagenome Rhizosphere
185 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
186 3300049744 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_02 Metagenome Rhizosphere
187 3300049758 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - D15_A_3_drought Metagenome Rhizosphere
188 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
189 3300049824 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_03 Metagenome Rhizosphere
190 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
191 3300050508 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 re-annotation Metagenome Rhizosphere
192 3300050509 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 re-annotation Metagenome Rhizosphere
193 3300050510 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 re-annotation Metagenome Rhizosphere
194 3300050511 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation Metagenome Rhizosphere
195 3300053088 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co1_37_5 endosphere Metagenome Endosphere
196 3300053090 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co3_31_39 endosphere Metagenome Endosphere
197 3300053092 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co3_15_40 endosphere Metagenome Endosphere
198 3300053109 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co2_52_27 endosphere Metagenome Endosphere
199 3300053130 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co2_44_8 endosphere Metagenome Endosphere
200 3300053131 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co3_35_48 endosphere Metagenome Endosphere
201 3300053136 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL2_62_7 endosphere Metagenome Endosphere
202 3300053142 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co1_31_6 endosphere Metagenome Endosphere
203 3300053153 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 endosphere Metagenome Endosphere
204 3300053156 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 endosphere Metagenome Endosphere
205 3300053177 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL1_23_5 endosphere Metagenome Endosphere
206 3300054114 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_03 Metagenome Rhizosphere
207 3300055283 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-4579-CL1_25_23_RD_R2 endosphere Metagenome Endosphere
208 2738541278 Niastella sp. CF465 Isolate Unclassified
209 2818991442 Chitinophaga pinensis 1204 Isolate Unclassified
210 2818991460 Chitinophaga polysaccharea 1209 Isolate Unclassified
211 2821136567 Chitinophaga sancti 1232 Isolate Unclassified
212 2883068021 Chitinophaga rhizosphaerae T16R-86 Isolate Rhizosphere
213 2884791551 Chitinophaga oryzae 1310 Isolate Unclassified
214 2896109856 Chitinophaga sp. SYP-B3965 Isolate Rhizosphere
215 2904467357 Chitinophaga sancti 3198 Isolate Unclassified
216 2929177148 Chitinophaga sp. R-72269 Hybrid assembly Isolate Unclassified
217 2929239360 Chitinophaga sp. R-73072 Hybrid assembly Isolate Unclassified
218 2929921140 Chitinophaga sp. R-72609 Hybrid assembly Isolate Unclassified
219 2945977869 Chitinophaga sp. W2I13 Isolate Rhizosphere
220 2946013367 Chitinophaga sp. W3I9 Isolate Rhizosphere
221 8003151029 Chitinophaga sp. GbtcB8 Isolate Unclassified

Type Distribution

Type Percentage (%)
Metagenomes 95.82
Metatranscriptomes 0
Isolates 4.18

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 14.63
Nodule 0
Rhizoplane 0.9
Rhizosphere 74.93
Stem 0
Stem Tuber 0
Unclassified 10.15

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0105237_10003306 3300009545 Bacteria 19208
2 MRS1b_contig_6871790 2162886011 Bacteria 1993
3 MBSR1b_contig_8539638 2162886012 Bacteria 1825
4 JGI24740J21852_10000816 3300001979 Bacteria 13719
5 JGI24739J22299_10001051 3300001989 Bacteria 10260
6 JGI25154J39366_1000047 3300002738 Bacteria 126449
7 JGI25157J39369_1006779 3300002741 Bacteria 1709
8 JGI25153J46596_10009659 3300003215 Bacteria 4445
9 rootH1_10038181 3300003316 Bacteria 4128
10 rootH1_10038181 3300003323 Bacteria 10550
11 rootH2_10009422 3300003320 Bacteria 9760
12 rootH2_10009424 3300003320 Bacteria 3436
13 rootH2_10013617 3300003320 Bacteria 9980
14 rootH2_10069037 3300003320 Unclassified 3607
15 rootH2_10143187 3300003320 Bacteria 1153
16 rootH2_10144348 3300003320 Bacteria 3277
17 rootH2_10240640 3300003320 Bacteria 2995
18 rootL2_10133707 3300003322 Bacteria 1739
19 rootH1_10068438 3300003323 Bacteria 6465
20 JGI25160J50197_1006253 3300003354 Bacteria 4839
21 JGI25160J50197_1007207 3300003354 Bacteria 4379
22 JGI25160J50197_1008452 3300003354 Bacteria 3920
23 Ga0055535_1002140 3300003761 Bacteria 7708
24 Ga0055542_1017013 3300003762 Bacteria 1133
25 Ga0055528_1000904 3300003790 Bacteria 20018
26 Ga0055530_10000546 3300003791 Bacteria 32621
27 Ga0055531_10000245 3300003794 Bacteria 59122
28 Ga0065165_1000725 3300005262 Bacteria 46083
29 Ga0065165_1021547 3300005262 Bacteria 2236
30 Ga0065712_10008267 3300005290 Bacteria 3308
31 Ga0065715_10127794 3300005293 Bacteria 2079
32 Ga0065707_10156157 3300005295 Bacteria 1570
33 Ga0070676_10084887 3300005328 Bacteria 1928
34 Ga0070683_100002349 3300005329 Bacteria 15014
35 Ga0070670_100011373 3300005331 Bacteria 7608
36 Ga0070670_100037886 3300005331 Bacteria 4147
37 Ga0068869_100022268 3300005334 Bacteria 4365
38 Ga0068869_100080095 3300005334 Bacteria 2435
39 Ga0070666_10007569 3300005335 Bacteria 6699
40 Ga0068868_100265412 3300005338 Bacteria 1449
41 Ga0070660_100167913 3300005339 Bacteria 1771
42 Ga0070689_100053077 3300005340 Bacteria 3136
43 Ga0070691_10028221 3300005341 Bacteria 2621
44 Ga0070692_10227068 3300005345 Bacteria 1106
45 Ga0070675_100004073 3300005354 Bacteria 11096
46 Ga0070671_100012652 3300005355 Bacteria 6801
47 Ga0070673_100084135 3300005364 Bacteria 2586
48 Ga0070688_100001664 3300005365 Bacteria 11122
49 Ga0070659_100020444 3300005366 Bacteria 5028
50 Ga0070667_100005481 3300005367 Bacteria 10593
51 Ga0070678_100086190 3300005456 Bacteria 2395
52 Ga0070662_100006736 3300005457 Bacteria 7426
53 Ga0070681_10151190 3300005458 Bacteria 2248
54 Ga0068867_100027826 3300005459 Bacteria 4066
55 Ga0068867_100089089 3300005459 Bacteria 2339
56 Ga0070698_100015364 3300005471 Bacteria 8090
57 Ga0070679_100004103 3300005530 Bacteria 13433
58 Ga0070679_100128444 3300005530 Bacteria 2516
59 Ga0070684_100022746 3300005535 Bacteria 5233
60 Ga0068853_100000201 3300005539 Bacteria 41960
61 Ga0068853_100426741 3300005539 Unclassified 1244
62 Ga0070672_100014038 3300005543 Bacteria 5667
63 Ga0070686_100040228 3300005544 Unclassified 2916
64 Ga0070665_100000016 3300005548 Bacteria 451538
65 Ga0068855_100002958 3300005563 Bacteria 20766
66 Ga0068855_100008654 3300005563 Bacteria 12297
67 Ga0070664_100065749 3300005564 Bacteria 3095
68 Ga0068857_100009218 3300005577 Bacteria 8561
69 Ga0068857_100065379 3300005577 Bacteria 3234
70 Ga0068857_100364409 3300005577 Bacteria 1340
71 Ga0068854_100058070 3300005578 Unclassified 2792
72 Ga0068856_100073117 3300005614 Unclassified 3395
73 Ga0068856_100076945 3300005614 Unclassified 3305
74 Ga0068852_100002349 3300005616 Bacteria 13027
75 Ga0068859_100181176 3300005617 Bacteria 2189
76 Ga0068861_100001097 3300005719 Bacteria 16748
77 Ga0068860_100000026 3300005843 Bacteria 270483
78 Ga0068860_100004401 3300005843 Bacteria 14392
79 Ga0068860_100005412 3300005843 Bacteria 12953
80 Ga0068862_100011567 3300005844 Bacteria 7280
81 Ga0075366_10074650 3300006195 Bacteria 2022
82 Ga0097621_100000027 3300006237 Bacteria 71873
83 Ga0075370_10162264 3300006353 Bacteria 1312
84 Ga0068871_100000107 3300006358 Bacteria 50575
85 Ga0068871_100094683 3300006358 Bacteria 2493
86 Ga0075428_100011686 3300006844 Bacteria 9771
87 Ga0075430_100010761 3300006846 Bacteria 7753
88 Ga0075431_100098990 3300006847 Unclassified 3009
89 Ga0075431_100285036 3300006847 Bacteria 1672
90 Ga0075429_100004950 3300006880 Bacteria 11474
91 Ga0075429_100033563 3300006880 Bacteria 4460
92 Ga0097620_100181184 3300006931 Bacteria 2189
93 Ga0105240_10000258 3300009093 Bacteria 105011
94 Ga0105240_10000715 3300009093 Bacteria 60725
95 Ga0105240_10001801 3300009093 Bacteria 36072
96 Ga0105240_10003107 3300009093 Bacteria 26115
97 Ga0105240_10031115 3300009093 Bacteria 6924
98 Ga0105240_10058973 3300009093 Bacteria 4791
99 Ga0105240_10065724 3300009093 Bacteria 4501
100 Ga0105240_10065737 3300009093 Unclassified 4501
101 Ga0105240_10370142 3300009093 Unclassified 1620
102 Ga0105240_10455022 3300009093 Unclassified 1431
103 Ga0111539_10005231 3300009094 Bacteria 16809
104 Ga0114129_10073348 3300009147 Bacteria 4768
105 Ga0114129_10337549 3300009147 Unclassified 2000
106 Ga0105241_10000955 3300009174 Bacteria 21852
107 Ga0105241_10138461 3300009174 Unclassified 1979
108 Ga0105242_10063027 3300009176 Bacteria 3053
109 Ga0105237_10006269 3300009545 Bacteria 13232
110 Ga0105237_10014376 3300009545 Bacteria 8282
111 Ga0105237_10041333 3300009545 Bacteria 4650
112 Ga0105238_10002148 3300009551 Bacteria 19937
113 Ga0105238_10108388 3300009551 Unclassified 2758
114 Ga0105249_10007683 3300009553 Bacteria 9397
115 Ga0105239_10000591 3300010375 Bacteria 51658
116 Ga0105239_10001037 3300010375 Bacteria 38729
117 Ga0105239_10006683 3300010375 Bacteria 13323
118 Ga0105239_10017967 3300010375 Bacteria 7820
119 Ga0105239_10030489 3300010375 Bacteria 5929
120 Ga0105239_10094636 3300010375 Bacteria 3300
121 Ga0157373_10016571 3300013100 Bacteria 5372
122 Ga0157373_10019702 3300013100 Unclassified 4907
123 Ga0157373_10122222 3300013100 Bacteria 1830
124 Ga0157371_10000741 3300013102 Bacteria 38124
125 Ga0157371_10003291 3300013102 Bacteria 14785
126 Ga0157371_10003413 3300013102 Bacteria 14431
127 Ga0157371_10007516 3300013102 Bacteria 8818
128 Ga0157370_10000242 3300013104 Bacteria 69678
129 Ga0157370_10007033 3300013104 Bacteria 12285
130 Ga0157370_10007210 3300013104 Bacteria 12134
131 Ga0157370_10034872 3300013104 Bacteria 4896
132 Ga0157370_10079275 3300013104 Bacteria 3093
133 Ga0157369_10021531 3300013105 Bacteria 7212
134 Ga0157369_10034266 3300013105 Bacteria 5574
135 Ga0157374_10000002 3300013296 Bacteria 1054226
136 Ga0157378_10040240 3300013297 Bacteria 4144
137 Ga0163162_10002356 3300013306 Bacteria 17749
138 Ga0163162_10004559 3300013306 Bacteria 13349
139 Ga0163162_10005116 3300013306 Bacteria 12641
140 Ga0163162_10005339 3300013306 Bacteria 12402
141 Ga0163162_10062079 3300013306 Bacteria 3776
142 Ga0163162_10130789 3300013306 Bacteria 2618
143 Ga0157372_10000618 3300013307 Bacteria 38797
144 Ga0157372_10000666 3300013307 Bacteria 37795
145 Ga0157372_10016345 3300013307 Bacteria 7963
146 Ga0157372_10125004 3300013307 Bacteria 2957
147 Ga0157375_10000336 3300013308 Bacteria 42479
148 Ga0163163_10085000 3300014325 Bacteria 3172
149 Ga0163163_10109841 3300014325 Unclassified 2785
150 Ga0157380_10001611 3300014326 Bacteria 14871
151 Ga0157380_10002204 3300014326 Bacteria 13099
152 Ga0157377_10002511 3300014745 Bacteria 8128
153 Ga0157379_10009216 3300014968 Bacteria 8596
154 Ga0157376_10000885 3300014969 Bacteria 19631
155 Ga0157376_10007433 3300014969 Bacteria 7822
156 Ga0157376_10062575 3300014969 Unclassified 3132
157 Ga0157376_10173399 3300014969 Bacteria 1966
158 Ga0182005_1000023 3300015265 Bacteria 246328
159 Ga0163161_10004394 3300017792 Bacteria 9832
160 Ga0209436_101008 3300025208 Bacteria 10794
161 Ga0209436_102088 3300025208 Bacteria 6265
162 Ga0209258_100068 3300025242 Bacteria 286288
163 Ga0209646_1000003 3300025246 Bacteria 1160860
164 Ga0209026_1000362 3300025250 Bacteria 42398
165 Ga0209148_1000182 3300025254 Bacteria 123558
166 Ga0209673_1000194 3300025273 Bacteria 122640
167 Ga0209130_1002056 3300025284 Bacteria 10900
168 Ga0209564_1008897 3300025295 Bacteria 4875
169 Ga0209564_1017216 3300025295 Bacteria 2829
170 Ga0209564_1028007 3300025295 Bacteria 1814
171 Ga0209758_1010355 3300025297 Bacteria 5594
172 Ga0209758_1025083 3300025297 Bacteria 2628
173 Ga0209050_1000658 3300025298 Bacteria 53407
174 Ga0207426_1000051 3300025302 Bacteria 391700
175 Ga0207426_1000455 3300025302 Bacteria 64858
176 Ga0207426_1002176 3300025302 Bacteria 13256
177 Ga0209051_1043212 3300025303 Bacteria 1584
178 Ga0209257_1000025 3300025304 Bacteria 724838
179 Ga0209257_1001487 3300025304 Bacteria 27514
180 Ga0207680_10012430 3300025903 Bacteria 4334
181 Ga0207647_10024202 3300025904 Unclassified 4005
182 Ga0207695_10000327 3300025913 Bacteria 113436
183 Ga0207695_10000486 3300025913 Bacteria 84856
184 Ga0207695_10000681 3300025913 Bacteria 66668
185 Ga0207695_10008969 3300025913 Bacteria 12449
186 Ga0207695_10077271 3300025913 Bacteria 3382
187 Ga0207695_10086141 3300025913 Bacteria 3169
188 Ga0207695_10113431 3300025913 Unclassified 2687
189 Ga0207695_10289776 3300025913 Unclassified 1529
190 Ga0207695_10293735 3300025913 Unclassified 1517
191 Ga0207671_10001641 3300025914 Bacteria 25464
192 Ga0207671_10008816 3300025914 Bacteria 8495
193 Ga0207671_10015994 3300025914 Bacteria 5847
194 Ga0207660_10062223 3300025917 Bacteria 2688
195 Ga0207652_10001372 3300025921 Bacteria 21656
196 Ga0207652_10039470 3300025921 Bacteria 4006
197 Ga0207652_10206443 3300025921 Bacteria 1768
198 Ga0207694_10084390 3300025924 Unclassified 2498
199 Ga0207650_10116074 3300025925 Bacteria 2078
200 Ga0207659_10072001 3300025926 Bacteria 2525
201 Ga0207690_10062898 3300025932 Bacteria 2529
202 Ga0207706_10013284 3300025933 Bacteria 7490
203 Ga0207691_10007756 3300025940 Bacteria 10334
204 Ga0207689_10061487 3300025942 Bacteria 3088
205 Ga0207661_10009151 3300025944 Bacteria 7101
206 Ga0207661_10352088 3300025944 Unclassified 1329
207 Ga0207667_10000340 3300025949 Bacteria 63904
208 Ga0207667_10000352 3300025949 Bacteria 62572
209 Ga0207667_10011285 3300025949 Bacteria 10390
210 Ga0207651_10076928 3300025960 Bacteria 2387
211 Ga0207712_10017560 3300025961 Bacteria 4649
212 Ga0207712_10054369 3300025961 Bacteria 2812
213 Ga0207677_10048619 3300026023 Bacteria 2857
214 Ga0207639_10002892 3300026041 Bacteria 11542
215 Ga0207639_10358071 3300026041 Bacteria 1305
216 Ga0207702_10095961 3300026078 Unclassified 2607
217 Ga0207702_10190424 3300026078 Unclassified 1895
218 Ga0207648_10002286 3300026089 Bacteria 20689
219 Ga0207648_10072708 3300026089 Bacteria 2997
220 Ga0207674_10004027 3300026116 Bacteria 17831
221 Ga0207674_10025964 3300026116 Bacteria 6234
222 Ga0207674_10062367 3300026116 Bacteria 3765
223 Ga0207674_10081516 3300026116 Bacteria 3238
224 Ga0207674_10238797 3300026116 Bacteria 1764
225 Ga0207674_10456562 3300026116 Bacteria 1235
226 Ga0207675_100003516 3300026118 Bacteria 15294
227 Ga0207683_10103463 3300026121 Bacteria 2544
228 Ga0207698_10016053 3300026142 Bacteria 5037
229 Ga0268266_10000034 3300028379 Bacteria 354251
230 Ga0268264_10000117 3300028381 Bacteria 195037
231 Ga0268264_10012112 3300028381 Bacteria 7100
232 Ga0268264_10013913 3300028381 Bacteria 6614
233 Ga0307517_10005050 3300028786 Bacteria 20050
234 Ga0265324_10034221 3300029957 Bacteria 1770
235 Ga0307511_10006633 3300030521 Bacteria 11669
236 Ga0265327_10000137 3300031251 Bacteria 160704
237 Ga0307509_10063042 3300031507 Bacteria 3905
238 Ga0307516_10000749 3300031730 Bacteria 44209
239 Ga0307516_10034744 3300031730 Bacteria 5064
240 Ga0307411_10082181 3300032005 Bacteria 2221
241 Ga0307510_10027784 3300033180 Bacteria 6473
242 Ga0395899_0062977 3300037312 Bacteria 2730
243 Ga0395900_0002285 3300037418 Bacteria 21289
244 Ga0395900_0108597 3300037418 Bacteria 2850
245 Ga0395900_0114912 3300037418 Bacteria 2762
246 Ga0395901_0039795 3300038443 Bacteria 4866
247 Ga0439436_0003128 3300041404 Bacteria 5018
248 Ga0439439_0013465 3300041406 Bacteria 1982
249 Ga0439461_0005542 3300041410 Unclassified 2155
250 Ga0451800_1569662 3300041459 Bacteria 1077
251 Ga0439431_0009545 3300041997 Unclassified 2193
252 Ga0439441_002213 3300042001 Bacteria 2705
253 Ga0439443_017569 3300042003 Bacteria 1101
254 Ga0439445_0001084 3300042004 Bacteria 5814
255 Ga0439449_0021336 3300042007 Bacteria 2425
256 Ga0439449_0025824 3300042007 Unclassified 2194
257 Ga0439457_003208 3300042014 Bacteria 4492
258 Ga0439462_0000911 3300042015 Bacteria 6249
259 Ga0450894_002297 3300042131 Bacteria 2590
260 Ga0450898_008306 3300042134 Unclassified 1635
261 Ga0466972_0021852 3300044658 Bacteria 3187
262 Ga0466972_0061237 3300044658 Bacteria 1805
263 Ga0466964_0019613 3300044706 Bacteria 2601
264 Ga0466970_0121431 3300044765 Unclassified 1431
265 Ga0466957_0000811 3300044842 Bacteria 15941
266 Ga0466957_0003598 3300044842 Bacteria 8550
267 Ga0466959_0002430 3300045049 Bacteria 11904
268 Ga0495627_008425 3300046453 Bacteria 3867
269 Ga0495638_0051911 3300046460 Bacteria 2556
270 Ga0495648_0006092 3300046524 Bacteria 9892
271 Ga0495633_0000058 3300046558 Bacteria 147584
272 Ga0495668_0002355 3300046616 Bacteria 15721
273 Ga0495611_0002092 3300046648 Bacteria 9375
274 Ga0495672_0034445 3300047320 Bacteria 3129
275 Ga0495687_000079 3300047443 Bacteria 147704
276 Ga0495686_0000041 3300047472 Bacteria 297599
277 Ga0496101_0010216 3300048904 Bacteria 6195
278 Ga0496114_0000420 3300048917 Bacteria 31391
279 Ga0496121_0000343 3300048924 Bacteria 96972
280 Ga0496126_0010428 3300048929 Bacteria 9739
281 Ga0501032_0005429 3300049569 Bacteria 9471
282 Ga0501034_0001294 3300049571 Bacteria 33843
283 Ga0501036_0067127 3300049572 Bacteria 3034
284 Ga0501039_0039796 3300049575 Bacteria 3630
285 Ga0501043_0004347 3300049579 Bacteria 11527
286 Ga0501046_0107677 3300049580 Unclassified 2132
287 Ga0501047_0023491 3300049581 Bacteria 5918
288 Ga0501047_0042141 3300049581 Bacteria 4412
289 Ga0501048_0026380 3300049582 Bacteria 4230
290 Ga0501070_0037801 3300049586 Bacteria 4029
291 Ga0501074_0020734 3300049590 Bacteria 4774
292 Ga0501080_0016269 3300049742 Bacteria 6867
293 Ga0501083_0004219 3300049744 Bacteria 10121
294 Ga0501241_000214 3300049758 Bacteria 13135
295 Ga0501044_0024519 3300049823 Bacteria 6401
296 Ga0501044_0025339 3300049823 Bacteria 6286
297 Ga0501045_0070990 3300049824 Bacteria 2563
298 nmdc:mga05p37_537250_c1 3300050507 Bacteria 1334
299 nmdc:mga09592_10170_c1 3300050508 Bacteria 7657
300 nmdc:mga09592_52132_c1 3300050508 Unclassified 3453
301 nmdc:mga0qj67_47224_c1 3300050509 Unclassified 3401
302 nmdc:mga06r32_190960_c1 3300050510 Unclassified 2036
303 nmdc:mga08y16_218075_c1 3300050511 Bacteria 1975
304 Ga0500644_0000176 3300053088 Bacteria 40998
305 Ga0500646_0005968 3300053090 Bacteria 3089
306 Ga0500646_0006979 3300053090 Bacteria 2878
307 Ga0500583_0000004 3300053092 Bacteria 174723
308 Ga0500583_0000514 3300053092 Bacteria 11842
309 Ga0500583_0007027 3300053092 Bacteria 3926
310 Ga0500583_0146703 3300053092 Bacteria 1174
311 Ga0500569_000151 3300053109 Bacteria 11053
312 Ga0500642_0004041 3300053130 Bacteria 4531
313 Ga0500652_002822 3300053131 Bacteria 5243
314 Ga0500652_070558 3300053131 Bacteria 1447
315 Ga0500559_0014076 3300053136 Bacteria 3382
316 Ga0500577_0041269 3300053142 Bacteria 1682
317 Ga0500616_0007054 3300053153 Bacteria 7213
318 Ga0500622_0000258 3300053156 Bacteria 53957
319 Ga0500622_0000557 3300053156 Bacteria 34131
320 Ga0500636_0016069 3300053177 Bacteria 4410
321 Ga0501084_0096258 3300054114 Bacteria 2486
322 Ga0500661_002985 3300055283 Unclassified 3179
323 2738727545 2738541278 Bacteria 9755573
324 2819572501 2818991442 Bacteria 8318214
325 2819680734 2818991460 Bacteria 7595395
326 2821140108 2821136567 Bacteria 8080116
327 2883073010 2883068021 Bacteria 6192739
328 2884795474 2884791551 Bacteria 8511252
329 2896113644 2896109856 Bacteria 7140722
330 2904472230 2904467357 Bacteria 8057758
331 2929178948 2929177148 Bacteria 7883697
332 2929244941 2929239360 Bacteria 7745570
333 2929927191 2929921140 Bacteria 8649150
334 2945981354 2945977869 Bacteria 7777518
335 2946019247 2946013367 Bacteria 7766675
336 8003151067 8003151029 Bacteria 8187759
337 Ga0105237_10003306
338 MRS1b_contig_6871790
339 MBSR1b_contig_8539638
340 JGI24740J21852_10000816
341 JGI24739J22299_10001051
342 JGI25154J39366_1000047
343 JGI25157J39369_1006779
344 JGI25153J46596_10009659
345 rootH1_10038181
346 rootH2_10009422
347 rootH2_10009424
348 rootH2_10013617
349 rootH2_10069037
350 rootH2_10143187
351 rootH2_10144348
352 rootH2_10240640
353 rootL2_10133707
354 rootH1_10068438
355 JGI25160J50197_1006253
356 JGI25160J50197_1007207
357 JGI25160J50197_1008452
358 Ga0055535_1002140
359 Ga0055542_1017013
360 Ga0055528_1000904
361 Ga0055530_10000546
362 Ga0055531_10000245
363 Ga0065165_1000725
364 Ga0065165_1021547
365 Ga0065712_10008267
366 Ga0065715_10127794
367 Ga0065707_10156157
368 Ga0070676_10084887
369 Ga0070683_100002349
370 Ga0070670_100011373
371 Ga0070670_100037886
372 Ga0068869_100022268
373 Ga0068869_100080095
374 Ga0070666_10007569
375 Ga0068868_100265412
376 Ga0070660_100167913
377 Ga0070689_100053077
378 Ga0070691_10028221
379 Ga0070692_10227068
380 Ga0070675_100004073
381 Ga0070671_100012652
382 Ga0070673_100084135
383 Ga0070688_100001664
384 Ga0070659_100020444
385 Ga0070667_100005481
386 Ga0070678_100086190
387 Ga0070662_100006736
388 Ga0070681_10151190
389 Ga0068867_100027826
390 Ga0068867_100089089
391 Ga0070698_100015364
392 Ga0070679_100004103
393 Ga0070679_100128444
394 Ga0070684_100022746
395 Ga0068853_100000201
396 Ga0068853_100426741
397 Ga0070672_100014038
398 Ga0070686_100040228
399 Ga0070665_100000016
400 Ga0068855_100002958
401 Ga0068855_100008654
402 Ga0070664_100065749
403 Ga0068857_100009218
404 Ga0068857_100065379
405 Ga0068857_100364409
406 Ga0068854_100058070
407 Ga0068856_100073117
408 Ga0068856_100076945
409 Ga0068852_100002349
410 Ga0068859_100181176
411 Ga0068861_100001097
412 Ga0068860_100000026
413 Ga0068860_100004401
414 Ga0068860_100005412
415 Ga0068862_100011567
416 Ga0075366_10074650
417 Ga0097621_100000027
418 Ga0075370_10162264
419 Ga0068871_100000107
420 Ga0068871_100094683
421 Ga0075428_100011686
422 Ga0075430_100010761
423 Ga0075431_100098990
424 Ga0075431_100285036
425 Ga0075429_100004950
426 Ga0075429_100033563
427 Ga0097620_100181184
428 Ga0105240_10000258
429 Ga0105240_10000715
430 Ga0105240_10001801
431 Ga0105240_10003107
432 Ga0105240_10031115
433 Ga0105240_10058973
434 Ga0105240_10065724
435 Ga0105240_10065737
436 Ga0105240_10370142
437 Ga0105240_10455022
438 Ga0111539_10005231
439 Ga0114129_10073348
440 Ga0114129_10337549
441 Ga0105241_10000955
442 Ga0105241_10138461
443 Ga0105242_10063027
444 Ga0105237_10006269
445 Ga0105237_10014376
446 Ga0105237_10041333
447 Ga0105238_10002148
448 Ga0105238_10108388
449 Ga0105249_10007683
450 Ga0105239_10000591
451 Ga0105239_10001037
452 Ga0105239_10006683
453 Ga0105239_10017967
454 Ga0105239_10030489
455 Ga0105239_10094636
456 Ga0157373_10016571
457 Ga0157373_10019702
458 Ga0157373_10122222
459 Ga0157371_10000741
460 Ga0157371_10003291
461 Ga0157371_10003413
462 Ga0157371_10007516
463 Ga0157370_10000242
464 Ga0157370_10007033
465 Ga0157370_10007210
466 Ga0157370_10034872
467 Ga0157370_10079275
468 Ga0157369_10021531
469 Ga0157369_10034266
470 Ga0157374_10000002
471 Ga0157378_10040240
472 Ga0163162_10002356
473 Ga0163162_10004559
474 Ga0163162_10005116
475 Ga0163162_10005339
476 Ga0163162_10062079
477 Ga0163162_10130789
478 Ga0157372_10000618
479 Ga0157372_10000666
480 Ga0157372_10016345
481 Ga0157372_10125004
482 Ga0157375_10000336
483 Ga0163163_10085000
484 Ga0163163_10109841
485 Ga0157380_10001611
486 Ga0157380_10002204
487 Ga0157377_10002511
488 Ga0157379_10009216
489 Ga0157376_10000885
490 Ga0157376_10007433
491 Ga0157376_10062575
492 Ga0157376_10173399
493 Ga0182005_1000023
494 Ga0163161_10004394
495 Ga0209436_101008
496 Ga0209436_102088
497 Ga0209258_100068
498 Ga0209646_1000003
499 Ga0209026_1000362
500 Ga0209148_1000182
501 Ga0209673_1000194
502 Ga0209130_1002056
503 Ga0209564_1008897
504 Ga0209564_1017216
505 Ga0209564_1028007
506 Ga0209758_1010355
507 Ga0209758_1025083
508 Ga0209050_1000658
509 Ga0207426_1000051
510 Ga0207426_1000455
511 Ga0207426_1002176
512 Ga0209051_1043212
513 Ga0209257_1000025
514 Ga0209257_1001487
515 Ga0207680_10012430
516 Ga0207647_10024202
517 Ga0207695_10000327
518 Ga0207695_10000486
519 Ga0207695_10000681
520 Ga0207695_10008969
521 Ga0207695_10077271
522 Ga0207695_10086141
523 Ga0207695_10113431
524 Ga0207695_10289776
525 Ga0207695_10293735
526 Ga0207671_10001641
527 Ga0207671_10008816
528 Ga0207671_10015994
529 Ga0207660_10062223
530 Ga0207652_10001372
531 Ga0207652_10039470
532 Ga0207652_10206443
533 Ga0207694_10084390
534 Ga0207650_10116074
535 Ga0207659_10072001
536 Ga0207690_10062898
537 Ga0207706_10013284
538 Ga0207691_10007756
539 Ga0207689_10061487
540 Ga0207661_10009151
541 Ga0207661_10352088
542 Ga0207667_10000340
543 Ga0207667_10000352
544 Ga0207667_10011285
545 Ga0207651_10076928
546 Ga0207712_10017560
547 Ga0207712_10054369
548 Ga0207677_10048619
549 Ga0207639_10002892
550 Ga0207639_10358071
551 Ga0207702_10095961
552 Ga0207702_10190424
553 Ga0207648_10002286
554 Ga0207648_10072708
555 Ga0207674_10004027
556 Ga0207674_10025964
557 Ga0207674_10062367
558 Ga0207674_10081516
559 Ga0207674_10238797
560 Ga0207674_10456562
561 Ga0207675_100003516
562 Ga0207683_10103463
563 Ga0207698_10016053
564 Ga0268266_10000034
565 Ga0268264_10000117
566 Ga0268264_10012112
567 Ga0268264_10013913
568 Ga0307517_10005050
569 Ga0265324_10034221
570 Ga0307511_10006633
571 Ga0265327_10000137
572 Ga0307509_10063042
573 Ga0307516_10000749
574 Ga0307516_10034744
575 Ga0307411_10082181
576 Ga0307510_10027784
577 Ga0395899_0062977
578 Ga0395900_0002285
579 Ga0395900_0108597
580 Ga0395900_0114912
581 Ga0395901_0039795
582 Ga0439436_0003128
583 Ga0439439_0013465
584 Ga0439461_0005542
585 Ga0451800_1569662
586 Ga0439431_0009545
587 Ga0439441_002213
588 Ga0439443_017569
589 Ga0439445_0001084
590 Ga0439449_0021336
591 Ga0439449_0025824
592 Ga0439457_003208
593 Ga0439462_0000911
594 Ga0450894_002297
595 Ga0450898_008306
596 Ga0466972_0021852
597 Ga0466972_0061237
598 Ga0466964_0019613
599 Ga0466970_0121431
600 Ga0466957_0000811
601 Ga0466957_0003598
602 Ga0466959_0002430
603 Ga0495627_008425
604 Ga0495638_0051911
605 Ga0495648_0006092
606 Ga0495633_0000058
607 Ga0495668_0002355
608 Ga0495611_0002092
609 Ga0495672_0034445
610 Ga0495687_000079
611 Ga0495686_0000041
612 Ga0496101_0010216
613 Ga0496114_0000420
614 Ga0496121_0000343
615 Ga0496126_0010428
616 Ga0501032_0005429
617 Ga0501034_0001294
618 Ga0501036_0067127
619 Ga0501039_0039796
620 Ga0501043_0004347
621 Ga0501046_0107677
622 Ga0501047_0023491
623 Ga0501047_0042141
624 Ga0501048_0026380
625 Ga0501070_0037801
626 Ga0501074_0020734
627 Ga0501080_0016269
628 Ga0501083_0004219
629 Ga0501241_000214
630 Ga0501044_0024519
631 Ga0501044_0025339
632 Ga0501045_0070990
633 nmdc:mga05p37_537250_c1
634 nmdc:mga09592_10170_c1
635 nmdc:mga09592_52132_c1
636 nmdc:mga0qj67_47224_c1
637 nmdc:mga06r32_190960_c1
638 nmdc:mga08y16_218075_c1
639 Ga0500644_0000176
640 Ga0500646_0005968
641 Ga0500646_0006979
642 Ga0500583_0000004
643 Ga0500583_0000514
644 Ga0500583_0007027
645 Ga0500583_0146703
646 Ga0500569_000151
647 Ga0500642_0004041
648 Ga0500652_002822
649 Ga0500652_070558
650 Ga0500559_0014076
651 Ga0500577_0041269
652 Ga0500616_0007054
653 Ga0500622_0000258
654 Ga0500622_0000557
655 Ga0500636_0016069
656 Ga0501084_0096258
657 Ga0500661_002985
658 2738727545
659 2819572501
660 2819680734
661 2821140108
662 2883073010
663 2884795474
664 2896113644
665 2904472230
666 2929178948
667 2929244941
668 2929927191
669 2945981354
670 2946019247
671 8003151067

MSA Aligner

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF06144

DNA_pol3_delta

DNA polymerase III, delta subunit

42

158

0.95

Structural Annotation

Top 5 Hits

ID Description Score Start End
7pfo-assembly1.cif.gz_A core human replisome 0.7345 137 203
1jql-assembly1.cif.gz_B mechanism of processivity clamp opening by the delta subunit wrench of the clamp loader complex of e. coli dna polymerase iii: structure of beta-delta (1-140) 0.6244 1 133
2uz3-assembly1.cif.gz_A crystal structure of thymidine kinase with dttp from u. urealyticum 0.6195 15 135
3glg-assembly2.cif.gz_H crystal structure of a mutant (gammat157a) e. coli clamp loader bound to primer-template dna 0.6191 2 330
3bos-assembly1.cif.gz_B crystal structure of a putative dna replication regulator hda (sama_1916) from shewanella amazonensis sb2b at 1.75 a resolution 0.6147 2 204
ID Description Score Start End Superfamily
1jqjC03 Mainly Alpha;Orthogonal Bundle;Helicase, Ruva Protein; domain 3; 0.9347 138 202 1.10.8.60
1jr3D03 Mainly Alpha;Orthogonal Bundle;Helicase, Ruva Protein; domain 3; 0.9131 138 203 1.10.8.60
3zh9B02 Mainly Alpha;Orthogonal Bundle;Helicase, Ruva Protein; domain 3; 0.9115 136 202 1.10.8.60
af_O96260_176_233_1.10.8.60 Mainly Alpha;Orthogonal Bundle;Helicase, Ruva Protein; domain 3; 0.8992 143 201 1.10.8.60
af_F4KEM0_516_577_1.10.8.60 Mainly Alpha;Orthogonal Bundle;Helicase, Ruva Protein; domain 3; 0.898 142 203 1.10.8.60
ID Description Score Start End GO Terms
AF-A0A259HGW8-F1-model_v4 DNA polymerase III subunit delta 0.9794 1 190 GO:0003677
GO:0003887
GO:0006261
GO:0009360
AF-A0A090WXT3-F1-model_v4 DNA-directed DNA polymerase (EC 2.7.7.7) 0.9671 155 332 GO:0003677
GO:0003887
GO:0006261
GO:0009360
AF-A0A5J4PWJ3-F1-model_v4 DNA polymerase III subunit delta 0.965 1 136 GO:0003677
GO:0003887
GO:0006261
GO:0009360
AF-A0A259HGW8-F1-model_v4 DNA polymerase III subunit delta 0.9644 1 190 GO:0003677
GO:0003887
GO:0006261
GO:0009360
AF-A0A7C3CCC5-F1-model_v4 DNA polymerase III subunit delta 0.9617 1 149 GO:0003677
GO:0003887
GO:0006261
GO:0009360

Map