F412797

General Info

Members Datasets Scaffolds Average Seq Length
336 206 672 396

Family's Representative Sequence

Representative Sequence 3300046522|Ga0495643_0070473|Ga0495643_0070473_128_1543
Length 466
Sequence LNILEIYPYPFSSVRSHLIPSVGLSVGLGGSTGFNSGSENAMPWVMGNLTKDQVRDLSAPGRYSDGDGLILKIGPSGGKSWILRVQVNGRRRDIGLGDSQDFSLRAARAAAADLRKLARAGIDPLEERKKQIVVIPTFEEAAELVHAELLKGWKNGKHTDQWLTTLKKYAYPKLGKLRVDQIEGPLIRDVLAEIWLDIPETARRLKQRIGTVLDWSYSKGFRSTEAPMRLISKGLPRQPRKTGHHAAMAHADLPKFLVQLRSKPFNVGRLALEATILTATRSGEVRGARWPELNEDFTVWTVPAKRMKAGVAHSVPLSPQAADVFRQAARIRIKDCDLVFPGQISGSPLSDMTLLEILRGMELPVTVHGFRSTFRDWVADETDYPREVAEAALAHTLENKVEAAYRRTDFFLKRRKLMNDWADYCDSAGITTSRKARAKQTAKRPPEPARLSPTGRKAVSVPGDGR

Samples

Sample ID Description Type Environment
1 3300046522 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 rhizosphere Metagenome Rhizosphere
2 2162886007 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 v1 Metagenome Rhizosphere
3 3300001979 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6 Metagenome Rhizosphere
4 3300001989 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5 Metagenome Rhizosphere
5 3300001990 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3 Metagenome Rhizosphere
6 3300002067 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C1 Metagenome Rhizosphere
7 3300002075 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4 Metagenome Rhizosphere
8 3300002076 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3 Metagenome Rhizosphere
9 3300002774 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mTSA Metagenome Endosphere
10 3300003214 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mCL Metagenome Endosphere
11 3300003215 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF Metagenome Endosphere
12 3300003781 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mLB_r2 Metagenome Endosphere
13 3300003791 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 Metagenome Endosphere
14 3300003794 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 Metagenome Endosphere
15 3300005289 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 v2 (version 2) Metagenome Rhizosphere
16 3300005327 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG Metagenome Rhizosphere
17 3300005335 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG Metagenome Rhizosphere
18 3300005336 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG Metagenome Rhizosphere
19 3300005338 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 Metagenome Rhizosphere
20 3300005339 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG Metagenome Rhizosphere
21 3300005341 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-1 metaG Metagenome Rhizosphere
22 3300005347 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG Metagenome Rhizosphere
23 3300005353 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG Metagenome Rhizosphere
24 3300005366 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG Metagenome Rhizosphere
25 3300005367 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG Metagenome Rhizosphere
26 3300005436 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG Metagenome Rhizosphere
27 3300005457 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG Metagenome Rhizosphere
28 3300005458 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG Metagenome Rhizosphere
29 3300005530 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG Metagenome Rhizosphere
30 3300005535 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG Metagenome Rhizosphere
31 3300005539 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 Metagenome Rhizosphere
32 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
33 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
34 3300005578 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 Metagenome Rhizosphere
35 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
36 3300005616 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 Metagenome Rhizosphere
37 3300005617 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 Metagenome Rhizosphere
38 3300005618 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 Metagenome Rhizosphere
39 3300005841 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 Metagenome Rhizosphere
40 3300005842 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 Metagenome Rhizosphere
41 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
42 3300005844 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 Metagenome Rhizosphere
43 3300006353 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 Metagenome Endosphere
44 3300006931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 (version 2) (version 2) Metagenome Rhizosphere
45 3300009092 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-4 metaG Metagenome Rhizosphere
46 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
47 3300009098 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG Metagenome Rhizosphere
48 3300009101 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG Metagenome Rhizosphere
49 3300009174 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG Metagenome Rhizosphere
50 3300009177 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG Metagenome Rhizosphere
51 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
52 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
53 3300009553 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG Metagenome Rhizosphere
54 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
55 3300013100 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6-5 metaG Metagenome Rhizosphere
56 3300013102 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG Metagenome Rhizosphere
57 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
58 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
59 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
60 3300014325 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG Metagenome Rhizosphere
61 3300017792 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG Metagenome Rhizosphere
62 3300025231 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mMS (SPAdes) (version 2) Metagenome Endosphere
63 3300025245 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mTSA (SPAdes) (version 3) Metagenome Endosphere
64 3300025258 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMS (SPAdes) (version 3) Metagenome Endosphere
65 3300025261 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mCL (SPAdes) (version 2) Metagenome Endosphere
66 3300025292 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mLB_r2 (SPAdes) (version 2) Metagenome Endosphere
67 3300025294 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mLB (SPAdes) (version 2) Metagenome Endosphere
68 3300025297 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF (SPAdes) (version 2) Metagenome Endosphere
69 3300025298 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 (SPAdes) (version 2) Metagenome Endosphere
70 3300025302 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMS (SPAdes) (version 2) Metagenome Endosphere
71 3300025303 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mMS_r2 (SPAdes) (version 2) Metagenome Endosphere
72 3300025304 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
73 3300025735 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
74 3300025904 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2 (SPAdes) (version 2) Metagenome Rhizosphere
75 3300025907 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
76 3300025909 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
77 3300025912 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
78 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
79 3300025914 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
80 3300025917 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
81 3300025919 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
82 3300025921 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
83 3300025923 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
84 3300025924 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
85 3300025927 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
86 3300025928 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
87 3300025932 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
88 3300025933 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
89 3300025941 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
90 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
91 3300025961 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
92 3300025972 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
93 3300025981 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 (SPAdes) (version 2) Metagenome Rhizosphere
94 3300025986 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
95 3300026023 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 (SPAdes) (version 2) Metagenome Rhizosphere
96 3300026035 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes) (version 2) Metagenome Rhizosphere
97 3300026041 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes) (version 2) Metagenome Rhizosphere
98 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
99 3300026088 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes) (version 2) Metagenome Rhizosphere
100 3300026142 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes) (version 2) Metagenome Rhizosphere
101 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
102 3300028380 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes) (version 2) Metagenome Rhizosphere
103 3300028381 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) Metagenome Rhizosphere
104 3300028794 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM Metagenome Unclassified
105 3300028800 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG Metagenome Rhizosphere
106 3300031548 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3 Metagenome Rhizosphere
107 3300031731 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-1 Metagenome Rhizosphere
108 3300031903 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-1 Metagenome Rhizosphere
109 3300031911 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1 Metagenome Rhizosphere
110 3300031995 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2 Metagenome Rhizosphere
111 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
112 3300032004 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3 Metagenome Rhizosphere
113 3300037312 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_B SG_2 Metagenome Rhizosphere
114 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
115 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
116 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
117 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
118 3300039437 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 v2 Metagenome Unclassified
119 3300041406 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0503DE14Z070717_5284 Metagenome Rhizosphere
120 3300041410 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0116DE14Z082817_5596 Metagenome Rhizosphere
121 3300041413 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - SB0710WE14Z080117_6839 Metagenome Rhizosphere
122 3300041997 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0317DE14Z082817_5607 Metagenome Rhizosphere
123 3300042004 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0612WE14Z082817_5619 Metagenome Rhizosphere
124 3300044673 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Bulk_9BB_GED Metagenome Rhizosphere
125 3300044683 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA3R Metagenome Rhizosphere
126 3300044693 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC2R Metagenome Rhizosphere
127 3300044765 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA2R Metagenome Rhizosphere
128 3300045049 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC3R Metagenome Rhizosphere
129 3300046455 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-307-CL1_26_33 rhizosphere Metagenome Rhizosphere
130 3300046463 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-866-CL3_75_7 rhizosphere Metagenome Rhizosphere
131 3300046471 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co3_9_34 rhizosphere Metagenome Rhizosphere
132 3300046472 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL1_35_33 rhizosphere Metagenome Rhizosphere
133 3300046492 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co3_21_57 rhizosphere Metagenome Rhizosphere
134 3300046500 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co1_23_3 rhizosphere Metagenome Rhizosphere
135 3300046507 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co2_62_14 rhizosphere Metagenome Rhizosphere
136 3300046512 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co2_50_17 rhizosphere Metagenome Rhizosphere
137 3300046515 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co2_62_25 rhizosphere Metagenome Rhizosphere
138 3300046516 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL1_35_3 rhizosphere Metagenome Rhizosphere
139 3300046519 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co2_51_16 rhizosphere Metagenome Rhizosphere
140 3300046524 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co1_12_9 rhizosphere Metagenome Rhizosphere
141 3300046529 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-866-CL2_50_11 rhizosphere Metagenome Rhizosphere
142 3300046642 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL2_42_16 rhizosphere Metagenome Rhizosphere
143 3300046660 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co1_32_7 rhizosphere Metagenome Rhizosphere
144 3300046692 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co1_37_5 rhizosphere Metagenome Rhizosphere
145 3300046809 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-258-CL2_67_23 rhizosphere Metagenome Rhizosphere
146 3300047317 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-307-CL2_57_8 rhizosphere Metagenome Rhizosphere
147 3300047322 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - SKWA-24-3-CL2_69_25 rhizosphere Metagenome Rhizosphere
148 3300047470 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWA-24-3-Co1_3_5 rhizosphere Metagenome Rhizosphere
149 3300048088 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL2_56_7 rhizosphere Metagenome Rhizosphere
150 3300048903 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7v unlabeled Metagenome Rhizoplane
151 3300048905 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1c N15 Metagenome Rhizoplane
152 3300048906 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1d N15 Metagenome Rhizoplane
153 3300048910 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3d N15 Metagenome Rhizoplane
154 3300048913 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4c N15 Metagenome Rhizoplane
155 3300048916 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5d N15 Metagenome Rhizoplane
156 3300048917 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6c N15 Metagenome Rhizoplane
157 3300048920 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1e N15 Metagenome Unclassified
158 3300048921 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1f N15 Metagenome Unclassified
159 3300048922 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2e N15 Metagenome Unclassified
160 3300048923 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2f N15 Metagenome Unclassified
161 3300048924 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_3e N15 Metagenome Unclassified
162 3300048926 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8y unlabeled Metagenome Unclassified
163 3300048927 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_4e N15 Metagenome Unclassified
164 3300048928 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_5e N15 Metagenome Unclassified
165 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
166 3300049663 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - I4_A_2_drought Metagenome Rhizosphere
167 3300049664 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - B5_A_2_drought Metagenome Rhizosphere
168 3300049668 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - I4_B_2_drought Metagenome Rhizosphere
169 3300049688 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - E14_A_4_drought Metagenome Rhizosphere
170 3300049690 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - G13_A_4_drought Metagenome Rhizosphere
171 3300049707 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - B5_B_2_drought Metagenome Rhizosphere
172 3300049777 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - G24_A_5_control Metagenome Rhizosphere
173 3300049778 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - I22_A_5_control Metagenome Rhizosphere
174 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
175 3300049853 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - F4_A_2_drought Metagenome Rhizosphere
176 3300050496 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 re-annotation Metagenome Endosphere
177 3300053087 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co3_14_51 endosphere Metagenome Endosphere
178 3300053118 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co3_13_34 endosphere Metagenome Endosphere
179 3300053133 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWA-24-3-Co2_41_10 endosphere Metagenome Endosphere
180 3300053139 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co1_23_3 endosphere Metagenome Endosphere
181 3300053153 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 endosphere Metagenome Endosphere
182 3300053158 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-866-Co1_10_5 endosphere Metagenome Endosphere
183 3300053730 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co2_68_28 endosphere Metagenome Endosphere
184 2510065045 Paraburkholderia sprentiae WSM5005 Isolate Nodule
185 2515154122 Paraburkholderia atlantica JPY251 Isolate Nodule
186 2582581305 Rhizorhabdus wittichii YR128 Isolate Rhizosphere
187 2599185239 Burkholderia sp. NFACC38-1 Isolate Rhizoplane
188 2599185359 Sphingomonas sp. NFR04 Isolate Rhizoplane
189 2738541275 Novosphingobium sp. GV027 Isolate Unclassified
190 2738541281 Methylobacterium sp. GV094 Isolate Unclassified
191 2738541301 Novosphingobium sp. GV079 Isolate Unclassified
192 2738541304 Novosphingobium sp. GV061 Isolate Unclassified
193 2738543022 Novosphingobium sp. GV055 Isolate Unclassified
194 2738543032 Methylobacterium sp. GV104 Isolate Unclassified
195 2738543033 Novosphingobium sp. GV064 Isolate Unclassified
196 2775507255 Sphingobium indicum B90A Isolate Rhizosphere
197 2818991466 Sphingomonas trueperi 1152a Isolate Unclassified
198 2852653556 Sphingopyxis sp. JAI108 Isolate Rhizosphere
199 2895880812 Frankia sp. BMG5.11 Isolate Unclassified
200 2928027323 Sphingomonas sp. 1185 Isolate Unclassified
201 2928100450 Novosphingobium sp. 1529 Isolate Rhizosphere
202 2928115317 Pseudacidovorax sp. 1753 Isolate Rhizosphere
203 2928959182 Novosphingobium capsulatum 1057 Isolate Unclassified
204 642555113 Paraburkholderia phytofirmans PsJN Isolate Unclassified
205 8018845410 Burkholderia reimsis BE51 Isolate Rhizosphere
206 8020945358 Burkholderia sp. BE17 Isolate Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 92.86
Metatranscriptomes 0
Isolates 7.14

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 11.31
Nodule 0.6
Rhizoplane 2.68
Rhizosphere 75.6
Stem 0
Stem Tuber 0
Unclassified 2.38

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0495643_0070473 3300046522 Bacteria 1836
2 SwRhRL2b_contig_2508598 2162886007 Bacteria 1888
3 SwRhRL2b_contig_3160136 2162886007 Bacteria 3022
4 JGI24740J21852_10003265 3300001979 Bacteria 7155
5 JGI24739J22299_10001202 3300001989 Bacteria 9686
6 JGI24739J22299_10039245 3300001989 Bacteria 1587
7 JGI24737J22298_10017138 3300001990 Bacteria 2335
8 JGI24735J21928_10007595 3300002067 Bacteria 3533
9 JGI24738J21930_10000043 3300002075 Bacteria 24825
10 JGI24738J21930_10003045 3300002075 Bacteria 4285
11 JGI24749J21850_1000053 3300002076 Bacteria 22163
12 JGI25150J39212_1000098 3300002774 Bacteria 50282
13 JGI25165J46597_1000181 3300003214 Bacteria 95569
14 JGI25153J46596_10000055 3300003215 Bacteria 135518
15 JGI25153J46596_10000172 3300003215 Bacteria 64551
16 Ga0055536_1001217 3300003781 Bacteria 15966
17 Ga0055530_10000035 3300003791 Bacteria 117598
18 Ga0055530_10002834 3300003791 Bacteria 10613
19 Ga0055531_10000431 3300003794 Bacteria 39766
20 Ga0065704_10002483 3300005289 Bacteria 9950
21 Ga0065704_10071395 3300005289 Bacteria 11338
22 Ga0070658_10000081 3300005327 Bacteria 90275
23 Ga0070658_10042452 3300005327 Bacteria 3673
24 Ga0070666_10004429 3300005335 Bacteria 8556
25 Ga0070680_100049620 3300005336 Bacteria 3422
26 Ga0070680_100060851 3300005336 Bacteria 3090
27 Ga0068868_100079727 3300005338 Bacteria 2623
28 Ga0070660_100000044 3300005339 Bacteria 71756
29 Ga0070660_100046821 3300005339 Bacteria 3316
30 Ga0070691_10002835 3300005341 Bacteria 7751
31 Ga0070668_100000228 3300005347 Bacteria 36392
32 Ga0070668_100000428 3300005347 Bacteria 27729
33 Ga0070668_100142202 3300005347 Bacteria 1934
34 Ga0070669_100000459 3300005353 Bacteria 30941
35 Ga0070669_100016216 3300005353 Bacteria 5313
36 Ga0070659_100000027 3300005366 Bacteria 143469
37 Ga0070667_100000686 3300005367 Bacteria 32694
38 Ga0070667_100000754 3300005367 Bacteria 30851
39 Ga0070667_100001788 3300005367 Bacteria 19134
40 Ga0070667_100011172 3300005367 Bacteria 7428
41 Ga0070713_100075267 3300005436 Unclassified 2863
42 Ga0070662_100077787 3300005457 Bacteria 2462
43 Ga0070662_100102750 3300005457 Bacteria 2166
44 Ga0070681_10007480 3300005458 Bacteria 10674
45 Ga0070679_100096908 3300005530 Bacteria 2937
46 Ga0070684_100175869 3300005535 Unclassified 1945
47 Ga0068853_100000140 3300005539 Bacteria 49375
48 Ga0068853_100000281 3300005539 Bacteria 35996
49 Ga0068853_100125072 3300005539 Bacteria 2296
50 Ga0070665_100001398 3300005548 Bacteria 28355
51 Ga0070665_100119001 3300005548 Bacteria 2644
52 Ga0068855_100000313 3300005563 Bacteria 60285
53 Ga0068855_100039197 3300005563 Bacteria 5625
54 Ga0068855_100346772 3300005563 Bacteria 1636
55 Ga0068854_100000524 3300005578 Bacteria 23255
56 Ga0068856_100132649 3300005614 Unclassified 2496
57 Ga0068852_100000112 3300005616 Bacteria 54817
58 Ga0068852_100111301 3300005616 Bacteria 2490
59 Ga0068859_100064948 3300005617 Bacteria 3683
60 Ga0068859_100288220 3300005617 Bacteria 1735
61 Ga0068864_100012984 3300005618 Bacteria 6894
62 Ga0068863_100000413 3300005841 Bacteria 43520
63 Ga0068863_100084599 3300005841 Bacteria 3006
64 Ga0068858_100000364 3300005842 Bacteria 47634
65 Ga0068860_100000424 3300005843 Bacteria 54103
66 Ga0068860_100000999 3300005843 Bacteria 31328
67 Ga0068860_100031773 3300005843 Bacteria 5076
68 Ga0068860_100076843 3300005843 Bacteria 3175
69 Ga0068860_100086891 3300005843 Bacteria 2976
70 Ga0068862_100106118 3300005844 Bacteria 2462
71 Ga0068862_100241811 3300005844 Bacteria 1641
72 Ga0075370_10000028 3300006353 Bacteria 50628
73 Ga0097620_100064948 3300006931 Bacteria 3683
74 Ga0097620_100288242 3300006931 Bacteria 1735
75 Ga0105250_10074753 3300009092 Bacteria 1371
76 Ga0105240_10000156 3300009093 Bacteria 139950
77 Ga0105240_10004294 3300009093 Bacteria 21769
78 Ga0105240_10416807 3300009093 Bacteria 1510
79 Ga0105245_10007786 3300009098 Bacteria 9388
80 Ga0105247_10031148 3300009101 Bacteria 3236
81 Ga0105247_10046684 3300009101 Bacteria 2659
82 Ga0105241_10127654 3300009174 Bacteria 2055
83 Ga0105248_10015198 3300009177 Bacteria 8484
84 Ga0105248_10024513 3300009177 Bacteria 6707
85 Ga0105248_10044174 3300009177 Bacteria 4998
86 Ga0105248_10128085 3300009177 Bacteria 2864
87 Ga0105237_10000325 3300009545 Bacteria 67280
88 Ga0105237_10071717 3300009545 Bacteria 3458
89 Ga0105238_10285192 3300009551 Bacteria 1633
90 Ga0105249_10004686 3300009553 Bacteria 11814
91 Ga0105249_10013177 3300009553 Bacteria 7295
92 Ga0105249_10049568 3300009553 Bacteria 3829
93 Ga0105239_10000118 3300010375 Bacteria 112168
94 Ga0105239_10207632 3300010375 Bacteria 2195
95 Ga0157373_10077614 3300013100 Bacteria 2343
96 Ga0157371_10001355 3300013102 Bacteria 25761
97 Ga0157371_10080092 3300013102 Bacteria 2313
98 Ga0157370_10006996 3300013104 Bacteria 12317
99 Ga0157370_10009682 3300013104 Bacteria 10249
100 Ga0157370_10251238 3300013104 Bacteria 1636
101 Ga0157369_10000782 3300013105 Bacteria 41020
102 Ga0157369_10001623 3300013105 Bacteria 27487
103 Ga0157369_10008099 3300013105 Bacteria 12046
104 Ga0157369_10021165 3300013105 Bacteria 7271
105 Ga0157369_10041371 3300013105 Bacteria 5030
106 Ga0157369_10056392 3300013105 Bacteria 4240
107 Ga0157372_10000832 3300013307 Bacteria 33445
108 Ga0157372_10389594 3300013307 Bacteria 1624
109 Ga0157372_10398648 3300013307 Bacteria 1604
110 Ga0163163_10063300 3300014325 Bacteria 3667
111 Ga0163161_10145736 3300017792 Bacteria 1796
112 Ga0207427_104455 3300025231 Bacteria 2352
113 Ga0207425_1000005 3300025245 Bacteria 900502
114 Ga0209129_1000423 3300025258 Bacteria 32153
115 Ga0209233_1000045 3300025261 Bacteria 473379
116 Ga0209676_1000085 3300025292 Bacteria 273425
117 Ga0209676_1001055 3300025292 Bacteria 31590
118 Ga0209676_1008928 3300025292 Bacteria 4400
119 Ga0209025_1000873 3300025294 Bacteria 47373
120 Ga0209758_1000002 3300025297 Bacteria 1400310
121 Ga0209758_1000007 3300025297 Bacteria 1270410
122 Ga0209758_1020195 3300025297 Bacteria 3166
123 Ga0209050_1000042 3300025298 Bacteria 402842
124 Ga0209050_1000801 3300025298 Bacteria 44325
125 Ga0209050_1002605 3300025298 Bacteria 14941
126 Ga0207426_1021722 3300025302 Bacteria 2215
127 Ga0209051_1029839 3300025303 Bacteria 2127
128 Ga0209257_1000558 3300025304 Bacteria 63862
129 Ga0209257_1002880 3300025304 Bacteria 15992
130 Ga0207713_1017868 3300025735 Bacteria 3532
131 Ga0207713_1038824 3300025735 Bacteria 2016
132 Ga0207647_10001261 3300025904 Bacteria 19474
133 Ga0207647_10042258 3300025904 Bacteria 2860
134 Ga0207647_10078104 3300025904 Bacteria 1989
135 Ga0207645_10034320 3300025907 Bacteria 3260
136 Ga0207705_10000193 3300025909 Bacteria 61961
137 Ga0207707_10005336 3300025912 Bacteria 11234
138 Ga0207695_10000250 3300025913 Bacteria 139984
139 Ga0207695_10002981 3300025913 Bacteria 24373
140 Ga0207695_10034745 3300025913 Bacteria 5477
141 Ga0207695_10295919 3300025913 Bacteria 1510
142 Ga0207671_10000100 3300025914 Bacteria 131821
143 Ga0207671_10045092 3300025914 Bacteria 3260
144 Ga0207660_10000171 3300025917 Bacteria 41117
145 Ga0207660_10085147 3300025917 Bacteria 2331
146 Ga0207660_10129289 3300025917 Bacteria 1921
147 Ga0207657_10001156 3300025919 Bacteria 28092
148 Ga0207652_10076390 3300025921 Bacteria 2921
149 Ga0207681_10000676 3300025923 Bacteria 22402
150 Ga0207681_10003027 3300025923 Bacteria 10562
151 Ga0207681_10006274 3300025923 Bacteria 7298
152 Ga0207694_10005798 3300025924 Bacteria 9462
153 Ga0207694_10211043 3300025924 Bacteria 1581
154 Ga0207687_10109545 3300025927 Bacteria 2046
155 Ga0207700_10021135 3300025928 Bacteria 4437
156 Ga0207690_10000067 3300025932 Bacteria 91404
157 Ga0207706_10013435 3300025933 Bacteria 7441
158 Ga0207706_10198006 3300025933 Bacteria 1762
159 Ga0207711_10000676 3300025941 Bacteria 33882
160 Ga0207711_10010093 3300025941 Bacteria 7848
161 Ga0207667_10000006 3300025949 Bacteria 679876
162 Ga0207667_10000091 3300025949 Bacteria 148651
163 Ga0207667_10075847 3300025949 Bacteria 3490
164 Ga0207667_10111876 3300025949 Bacteria 2816
165 Ga0207712_10010759 3300025961 Bacteria 5815
166 Ga0207668_10000167 3300025972 Bacteria 45608
167 Ga0207668_10002089 3300025972 Bacteria 11655
168 Ga0207640_10000906 3300025981 Bacteria 16636
169 Ga0207658_10000587 3300025986 Bacteria 32623
170 Ga0207658_10000820 3300025986 Bacteria 25974
171 Ga0207658_10000849 3300025986 Bacteria 25528
172 Ga0207658_10001370 3300025986 Bacteria 19027
173 Ga0207677_10082572 3300026023 Bacteria 2310
174 Ga0207703_10000383 3300026035 Bacteria 47353
175 Ga0207639_10000038 3300026041 Bacteria 145316
176 Ga0207639_10000267 3300026041 Bacteria 37378
177 Ga0207702_10020439 3300026078 Bacteria 5484
178 Ga0207702_10100678 3300026078 Unclassified 2550
179 Ga0207641_10000050 3300026088 Bacteria 175954
180 Ga0207641_10090603 3300026088 Bacteria 2674
181 Ga0207698_10000081 3300026142 Bacteria 63461
182 Ga0207698_10001707 3300026142 Bacteria 12800
183 Ga0207698_10063641 3300026142 Unclassified 2888
184 Ga0268266_10173492 3300028379 Bacteria 1958
185 Ga0268265_10059288 3300028380 Bacteria 2927
186 Ga0268264_10000345 3300028381 Bacteria 71600
187 Ga0268264_10000471 3300028381 Bacteria 54745
188 Ga0268264_10020618 3300028381 Bacteria 5385
189 Ga0268264_10155174 3300028381 Bacteria 2057
190 Ga0307515_10000093 3300028794 Bacteria 212053
191 Ga0265338_10008938 3300028800 Bacteria 12049
192 Ga0307408_100006942 3300031548 Bacteria 7495
193 Ga0307408_100039803 3300031548 Bacteria 3325
194 Ga0307405_10006457 3300031731 Bacteria 5769
195 Ga0307405_10043774 3300031731 Bacteria 2734
196 Ga0307407_10150897 3300031903 Bacteria 1510
197 Ga0307412_10001280 3300031911 Bacteria 14081
198 Ga0307412_10018319 3300031911 Bacteria 4211
199 Ga0307412_10103766 3300031911 Bacteria 2016
200 Ga0307409_100287092 3300031995 Bacteria 1524
201 Ga0307416_100104709 3300032002 Bacteria 2474
202 Ga0307414_10001336 3300032004 Bacteria 12755
203 Ga0307414_10005919 3300032004 Bacteria 6771
204 Ga0395899_0000530 3300037312 Bacteria 41828
205 Ga0395899_0007460 3300037312 Bacteria 8451
206 Ga0395900_0014218 3300037418 Bacteria 8124
207 Ga0395900_0170035 3300037418 Bacteria 2219
208 Ga0395900_0227558 3300037418 Bacteria 1877
209 Ga0395898_0000315 3300037466 Bacteria 111811
210 Ga0395898_0030194 3300037466 Bacteria 5425
211 Ga0395898_0206598 3300037466 Bacteria 1874
212 Ga0395898_0471057 3300037466 Bacteria 1195
213 Ga0395905_0000005 3300037471 Bacteria 557808
214 Ga0395905_0008881 3300037471 Bacteria 9872
215 Ga0395905_0120734 3300037471 Bacteria 2463
216 Ga0395905_0180916 3300037471 Bacteria 1979
217 Ga0395905_0233122 3300037471 Bacteria 1721
218 Ga0395905_0254443 3300037471 Bacteria 1640
219 Ga0395901_0000242 3300038443 Bacteria 68210
220 Ga0395901_0005112 3300038443 Bacteria 13251
221 Ga0395901_0014885 3300038443 Bacteria 7903
222 Ga0395901_0219592 3300038443 Bacteria 1987
223 Ga0395901_0615779 3300038443 Bacteria 1093
224 Ga0436365_0694988 3300039437 Bacteria 10622
225 Ga0439439_0003745 3300041406 Bacteria 3374
226 Ga0439461_0001699 3300041410 Bacteria 3432
227 Ga0439465_0002955 3300041413 Bacteria 5561
228 Ga0439431_0003370 3300041997 Bacteria 3515
229 Ga0439445_0000066 3300042004 Bacteria 15924
230 Ga0439445_0002506 3300042004 Bacteria 4086
231 Ga0453683_0014708 3300044673 Bacteria 5079
232 Ga0466965_0030232 3300044683 Bacteria 2638
233 Ga0466961_0000117 3300044693 Bacteria 53089
234 Ga0466970_0115823 3300044765 Bacteria 1466
235 Ga0466959_0223337 3300045049 Unclassified 1306
236 Ga0495603_0065232 3300046455 Bacteria 2146
237 Ga0495653_0123968 3300046463 Bacteria 1837
238 Ga0495650_0001776 3300046471 Bacteria 19584
239 Ga0495580_0002002 3300046472 Bacteria 17935
240 Ga0495580_0017251 3300046472 Bacteria 5405
241 Ga0495585_0001077 3300046492 Bacteria 22514
242 Ga0495596_0000171 3300046500 Bacteria 45024
243 Ga0495606_0002696 3300046507 Bacteria 20059
244 Ga0495606_0106938 3300046507 Bacteria 1693
245 Ga0495610_0000165 3300046512 Bacteria 73467
246 Ga0495610_0000170 3300046512 Bacteria 72711
247 Ga0495610_0000496 3300046512 Bacteria 40189
248 Ga0495620_0002683 3300046515 Bacteria 10270
249 Ga0495620_0003501 3300046515 Bacteria 8981
250 Ga0495628_0036645 3300046516 Bacteria 3935
251 Ga0495632_0001359 3300046519 Bacteria 20574
252 Ga0495643_0000215 3300046522 Bacteria 88969
253 Ga0495648_0000088 3300046524 Bacteria 115109
254 Ga0495648_0071164 3300046524 Bacteria 2017
255 Ga0495652_0013336 3300046529 Bacteria 7395
256 Ga0495634_0029807 3300046642 Bacteria 3775
257 Ga0495625_0020685 3300046660 Bacteria 5073
258 Ga0495671_0009906 3300046692 Bacteria 5304
259 Ga0495600_0222792 3300046809 Bacteria 1206
260 Ga0495604_0101053 3300047317 Bacteria 2119
261 Ga0495680_0076749 3300047322 Bacteria 2532
262 Ga0495681_0000104 3300047470 Bacteria 74261
263 Ga0495681_0000209 3300047470 Bacteria 48667
264 Ga0495602_0021872 3300048088 Bacteria 6278
265 Ga0496100_0051926 3300048903 Bacteria 2663
266 Ga0496102_0000377 3300048905 Bacteria 53437
267 Ga0496103_0000128 3300048906 Bacteria 81657
268 Ga0496107_0100139 3300048910 Bacteria 2124
269 Ga0496110_0271107 3300048913 Unclassified 1545
270 Ga0496113_0017250 3300048916 Bacteria 5007
271 Ga0496114_0231007 3300048917 Unclassified 1625
272 Ga0496117_0003410 3300048920 Bacteria 18497
273 Ga0496118_0017222 3300048921 Bacteria 6587
274 Ga0496119_0002895 3300048922 Bacteria 18314
275 Ga0496120_0003995 3300048923 Bacteria 12820
276 Ga0496121_0000024 3300048924 Bacteria 462959
277 Ga0496121_0000065 3300048924 Bacteria 269310
278 Ga0496123_0001729 3300048926 Bacteria 28965
279 Ga0496123_0037559 3300048926 Bacteria 3418
280 Ga0496123_0138889 3300048926 Bacteria 1332
281 Ga0496124_0002003 3300048927 Bacteria 27742
282 Ga0496124_0002122 3300048927 Bacteria 26680
283 Ga0496124_0011208 3300048927 Bacteria 8986
284 Ga0496124_0095939 3300048927 Bacteria 2410
285 Ga0496124_0162775 3300048927 Bacteria 1737
286 Ga0496125_0014732 3300048928 Bacteria 7596
287 Ga0496125_0048382 3300048928 Bacteria 3547
288 Ga0496125_0055759 3300048928 Bacteria 3216
289 Ga0496126_0000493 3300048929 Bacteria 77742
290 Ga0501223_000018 3300049663 Bacteria 67853
291 Ga0501224_000002 3300049664 Bacteria 229331
292 Ga0501233_000006 3300049668 Bacteria 39891
293 Ga0501233_004216 3300049668 Bacteria 2623
294 Ga0501259_001125 3300049688 Bacteria 4459
295 Ga0501261_000033 3300049690 Bacteria 30506
296 Ga0501234_000123 3300049707 Bacteria 10106
297 Ga0501234_000167 3300049707 Bacteria 9005
298 Ga0501281_00253 3300049777 Bacteria 5725
299 Ga0501282_001205 3300049778 Bacteria 2899
300 Ga0501044_0001276 3300049823 Bacteria 29754
301 Ga0501226_000026 3300049853 Bacteria 91031
302 nmdc:mga07m45_3_c1 3300050496 Bacteria 421414
303 Ga0500643_000001 3300053087 Bacteria 1440111
304 Ga0500643_002783 3300053087 Bacteria 8747
305 Ga0500594_0002376 3300053118 Bacteria 4092
306 Ga0500655_000007 3300053133 Bacteria 72027
307 Ga0500655_000008 3300053133 Bacteria 67575
308 Ga0500568_0001526 3300053139 Bacteria 14737
309 Ga0500616_0001532 3300053153 Bacteria 21748
310 Ga0500616_0004042 3300053153 Bacteria 10669
311 Ga0500627_0000165 3300053158 Bacteria 19563
312 Ga0500645_013208 3300053730 Bacteria 2656
313 2510248053 2510065045 Bacteria 7761063
314 2515685773 2515154122 Bacteria 8609520
315 2585261029 2582581305 Bacteria 4895574
316 2599742208 2599185239 Bacteria 8686614
317 2600227220 2599185359 Bacteria 4772316
318 2738710940 2738541275 Bacteria 4830863
319 2738743217 2738541281 Bacteria 5112672
320 2738849365 2738541301 Bacteria 4834102
321 2738865094 2738541304 Bacteria 4833665
322 2739297612 2738543022 Bacteria 4835059
323 2739352834 2738543032 Bacteria 5115625
324 2739359290 2738543033 Bacteria 4833336
325 2778126695 2775507255 Bacteria 3945731
326 2819715298 2818991466 Bacteria 4748179
327 2852656786 2852653556 Bacteria 4050083
328 2895884663 2895880812 Bacteria 11255272
329 2928029519 2928027323 Bacteria 4382488
330 2928101049 2928100450 Bacteria 4837635
331 2928115877 2928115317 Bacteria 6477646
332 2928962122 2928959182 Bacteria 4725774
333 2928963020 2928959182 Bacteria 4725774
334 642617581 642555113 Bacteria 8214658
335 8018846496 8018845410 Bacteria 8933938
336 8020948599 8020945358 Bacteria 8467355
337 Ga0495643_0070473
338 SwRhRL2b_contig_2508598
339 SwRhRL2b_contig_3160136
340 JGI24740J21852_10003265
341 JGI24739J22299_10001202
342 JGI24739J22299_10039245
343 JGI24737J22298_10017138
344 JGI24735J21928_10007595
345 JGI24738J21930_10000043
346 JGI24738J21930_10003045
347 JGI24749J21850_1000053
348 JGI25150J39212_1000098
349 JGI25165J46597_1000181
350 JGI25153J46596_10000055
351 JGI25153J46596_10000172
352 Ga0055536_1001217
353 Ga0055530_10000035
354 Ga0055530_10002834
355 Ga0055531_10000431
356 Ga0065704_10002483
357 Ga0065704_10071395
358 Ga0070658_10000081
359 Ga0070658_10042452
360 Ga0070666_10004429
361 Ga0070680_100049620
362 Ga0070680_100060851
363 Ga0068868_100079727
364 Ga0070660_100000044
365 Ga0070660_100046821
366 Ga0070691_10002835
367 Ga0070668_100000228
368 Ga0070668_100000428
369 Ga0070668_100142202
370 Ga0070669_100000459
371 Ga0070669_100016216
372 Ga0070659_100000027
373 Ga0070667_100000686
374 Ga0070667_100000754
375 Ga0070667_100001788
376 Ga0070667_100011172
377 Ga0070713_100075267
378 Ga0070662_100077787
379 Ga0070662_100102750
380 Ga0070681_10007480
381 Ga0070679_100096908
382 Ga0070684_100175869
383 Ga0068853_100000140
384 Ga0068853_100000281
385 Ga0068853_100125072
386 Ga0070665_100001398
387 Ga0070665_100119001
388 Ga0068855_100000313
389 Ga0068855_100039197
390 Ga0068855_100346772
391 Ga0068854_100000524
392 Ga0068856_100132649
393 Ga0068852_100000112
394 Ga0068852_100111301
395 Ga0068859_100064948
396 Ga0068859_100288220
397 Ga0068864_100012984
398 Ga0068863_100000413
399 Ga0068863_100084599
400 Ga0068858_100000364
401 Ga0068860_100000424
402 Ga0068860_100000999
403 Ga0068860_100031773
404 Ga0068860_100076843
405 Ga0068860_100086891
406 Ga0068862_100106118
407 Ga0068862_100241811
408 Ga0075370_10000028
409 Ga0097620_100064948
410 Ga0097620_100288242
411 Ga0105250_10074753
412 Ga0105240_10000156
413 Ga0105240_10004294
414 Ga0105240_10416807
415 Ga0105245_10007786
416 Ga0105247_10031148
417 Ga0105247_10046684
418 Ga0105241_10127654
419 Ga0105248_10015198
420 Ga0105248_10024513
421 Ga0105248_10044174
422 Ga0105248_10128085
423 Ga0105237_10000325
424 Ga0105237_10071717
425 Ga0105238_10285192
426 Ga0105249_10004686
427 Ga0105249_10013177
428 Ga0105249_10049568
429 Ga0105239_10000118
430 Ga0105239_10207632
431 Ga0157373_10077614
432 Ga0157371_10001355
433 Ga0157371_10080092
434 Ga0157370_10006996
435 Ga0157370_10009682
436 Ga0157370_10251238
437 Ga0157369_10000782
438 Ga0157369_10001623
439 Ga0157369_10008099
440 Ga0157369_10021165
441 Ga0157369_10041371
442 Ga0157369_10056392
443 Ga0157372_10000832
444 Ga0157372_10389594
445 Ga0157372_10398648
446 Ga0163163_10063300
447 Ga0163161_10145736
448 Ga0207427_104455
449 Ga0207425_1000005
450 Ga0209129_1000423
451 Ga0209233_1000045
452 Ga0209676_1000085
453 Ga0209676_1001055
454 Ga0209676_1008928
455 Ga0209025_1000873
456 Ga0209758_1000002
457 Ga0209758_1000007
458 Ga0209758_1020195
459 Ga0209050_1000042
460 Ga0209050_1000801
461 Ga0209050_1002605
462 Ga0207426_1021722
463 Ga0209051_1029839
464 Ga0209257_1000558
465 Ga0209257_1002880
466 Ga0207713_1017868
467 Ga0207713_1038824
468 Ga0207647_10001261
469 Ga0207647_10042258
470 Ga0207647_10078104
471 Ga0207645_10034320
472 Ga0207705_10000193
473 Ga0207707_10005336
474 Ga0207695_10000250
475 Ga0207695_10002981
476 Ga0207695_10034745
477 Ga0207695_10295919
478 Ga0207671_10000100
479 Ga0207671_10045092
480 Ga0207660_10000171
481 Ga0207660_10085147
482 Ga0207660_10129289
483 Ga0207657_10001156
484 Ga0207652_10076390
485 Ga0207681_10000676
486 Ga0207681_10003027
487 Ga0207681_10006274
488 Ga0207694_10005798
489 Ga0207694_10211043
490 Ga0207687_10109545
491 Ga0207700_10021135
492 Ga0207690_10000067
493 Ga0207706_10013435
494 Ga0207706_10198006
495 Ga0207711_10000676
496 Ga0207711_10010093
497 Ga0207667_10000006
498 Ga0207667_10000091
499 Ga0207667_10075847
500 Ga0207667_10111876
501 Ga0207712_10010759
502 Ga0207668_10000167
503 Ga0207668_10002089
504 Ga0207640_10000906
505 Ga0207658_10000587
506 Ga0207658_10000820
507 Ga0207658_10000849
508 Ga0207658_10001370
509 Ga0207677_10082572
510 Ga0207703_10000383
511 Ga0207639_10000038
512 Ga0207639_10000267
513 Ga0207702_10020439
514 Ga0207702_10100678
515 Ga0207641_10000050
516 Ga0207641_10090603
517 Ga0207698_10000081
518 Ga0207698_10001707
519 Ga0207698_10063641
520 Ga0268266_10173492
521 Ga0268265_10059288
522 Ga0268264_10000345
523 Ga0268264_10000471
524 Ga0268264_10020618
525 Ga0268264_10155174
526 Ga0307515_10000093
527 Ga0265338_10008938
528 Ga0307408_100006942
529 Ga0307408_100039803
530 Ga0307405_10006457
531 Ga0307405_10043774
532 Ga0307407_10150897
533 Ga0307412_10001280
534 Ga0307412_10018319
535 Ga0307412_10103766
536 Ga0307409_100287092
537 Ga0307416_100104709
538 Ga0307414_10001336
539 Ga0307414_10005919
540 Ga0395899_0000530
541 Ga0395899_0007460
542 Ga0395900_0014218
543 Ga0395900_0170035
544 Ga0395900_0227558
545 Ga0395898_0000315
546 Ga0395898_0030194
547 Ga0395898_0206598
548 Ga0395898_0471057
549 Ga0395905_0000005
550 Ga0395905_0008881
551 Ga0395905_0120734
552 Ga0395905_0180916
553 Ga0395905_0233122
554 Ga0395905_0254443
555 Ga0395901_0000242
556 Ga0395901_0005112
557 Ga0395901_0014885
558 Ga0395901_0219592
559 Ga0395901_0615779
560 Ga0436365_0694988
561 Ga0439439_0003745
562 Ga0439461_0001699
563 Ga0439465_0002955
564 Ga0439431_0003370
565 Ga0439445_0000066
566 Ga0439445_0002506
567 Ga0453683_0014708
568 Ga0466965_0030232
569 Ga0466961_0000117
570 Ga0466970_0115823
571 Ga0466959_0223337
572 Ga0495603_0065232
573 Ga0495653_0123968
574 Ga0495650_0001776
575 Ga0495580_0002002
576 Ga0495580_0017251
577 Ga0495585_0001077
578 Ga0495596_0000171
579 Ga0495606_0002696
580 Ga0495606_0106938
581 Ga0495610_0000165
582 Ga0495610_0000170
583 Ga0495610_0000496
584 Ga0495620_0002683
585 Ga0495620_0003501
586 Ga0495628_0036645
587 Ga0495632_0001359
588 Ga0495643_0000215
589 Ga0495648_0000088
590 Ga0495648_0071164
591 Ga0495652_0013336
592 Ga0495634_0029807
593 Ga0495625_0020685
594 Ga0495671_0009906
595 Ga0495600_0222792
596 Ga0495604_0101053
597 Ga0495680_0076749
598 Ga0495681_0000104
599 Ga0495681_0000209
600 Ga0495602_0021872
601 Ga0496100_0051926
602 Ga0496102_0000377
603 Ga0496103_0000128
604 Ga0496107_0100139
605 Ga0496110_0271107
606 Ga0496113_0017250
607 Ga0496114_0231007
608 Ga0496117_0003410
609 Ga0496118_0017222
610 Ga0496119_0002895
611 Ga0496120_0003995
612 Ga0496121_0000024
613 Ga0496121_0000065
614 Ga0496123_0001729
615 Ga0496123_0037559
616 Ga0496123_0138889
617 Ga0496124_0002003
618 Ga0496124_0002122
619 Ga0496124_0011208
620 Ga0496124_0095939
621 Ga0496124_0162775
622 Ga0496125_0014732
623 Ga0496125_0048382
624 Ga0496125_0055759
625 Ga0496126_0000493
626 Ga0501223_000018
627 Ga0501224_000002
628 Ga0501233_000006
629 Ga0501233_004216
630 Ga0501259_001125
631 Ga0501261_000033
632 Ga0501234_000123
633 Ga0501234_000167
634 Ga0501281_00253
635 Ga0501282_001205
636 Ga0501044_0001276
637 Ga0501226_000026
638 nmdc:mga07m45_3_c1
639 Ga0500643_000001
640 Ga0500643_002783
641 Ga0500594_0002376
642 Ga0500655_000007
643 Ga0500655_000008
644 Ga0500568_0001526
645 Ga0500616_0001532
646 Ga0500616_0004042
647 Ga0500627_0000165
648 Ga0500645_013208
649 2510248053
650 2515685773
651 2585261029
652 2599742208
653 2600227220
654 2738710940
655 2738743217
656 2738849365
657 2738865094
658 2739297612
659 2739352834
660 2739359290
661 2778126695
662 2819715298
663 2852656786
664 2895884663
665 2928029519
666 2928101049
667 2928115877
668 2928962122
669 2928963020
670 642617581
671 8018846496
672 8020948599

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF22022

Phage_int_M

Phage integrase central domain

138

233

0.97

PF13356

Arm-DNA-bind_3

Arm DNA-binding domain

49

131

0.95

PF00589

Phage_integrase

Phage integrase family

247

410

0.88

Structural Annotation

Top 5 Hits

ID Description Score Start End
3rmp-assembly1.cif.gz_C structural basis for the recognition of attp substrates by p4-like integrases 0.9454 3 74
3jtz-assembly1.cif.gz_A structure of the arm-type binding domain of hpi integrase 0.9245 3 74
3ju0-assembly1.cif.gz_A structure of the arm-type binding domain of hai7 integrase 0.9219 3 81
3rmp-assembly1.cif.gz_C structural basis for the recognition of attp substrates by p4-like integrases 0.8978 3 74
2khv-assembly1.cif.gz_A solution nmr structure of protein nmul_a0922 from nitrosospira multiformis. northeast structural genomics consortium target nmr38b. 0.8586 92 199
ID Description Score Start End Superfamily
af_P37326_1_84_3.30.160.390 Alpha Beta;2-Layer Sandwich;Double Stranded RNA Binding Domain;Integrase, DNA-binding domain 0.9457 4 82 3.30.160.390
3rmpC00 Alpha Beta;2-Layer Sandwich;Double Stranded RNA Binding Domain;Integrase, DNA-binding domain 0.9454 3 74 3.30.160.390
af_P39347_1_63_3.30.160.390 Alpha Beta;2-Layer Sandwich;Double Stranded RNA Binding Domain;Integrase, DNA-binding domain 0.9346 26 85 3.30.160.390
2khvA01 Mainly Alpha;Orthogonal Bundle;DNA polymerase; domain 1;Tyrosine recombinase, N-terminal domain 0.9327 92 175 1.10.150.130
af_P37326_196_376_1.10.443.10 Mainly Alpha;Orthogonal Bundle;hpI Integrase; Chain A;Intergrase catalytic core 0.9269 199 376 1.10.443.10
ID Description Score Start End GO Terms
AF-A0A502J3F0-F1-model_v4 DUF4102 domain-containing protein 0.9828 3 75 GO:0015074
AF-A0A2D5HGX2-F1-model_v4 Integrase DNA-binding domain-containing protein 0.9784 4 79 GO:0015074
AF-A0A2W6VED1-F1-model_v4 Integrase DNA-binding domain-containing protein 0.9689 1 83 GO:0015074
AF-A0A826J6A7-F1-model_v4 Integrase 0.9583 231 381 GO:0003677
GO:0006310
GO:0015074
AF-A0A258GVM3-F1-model_v4 Integrase DNA-binding domain-containing protein 0.9571 4 79 GO:0015074

Map