F414787

General Info

Members Datasets Scaffolds Average Seq Length
341 170 682 496

Family's Representative Sequence

Representative Sequence 3300031247|Ga0265340_10013804|Ga0265340_100138043
Length 596
Sequence MAGVGQRLEIRQGQSLVMTPQLQQAIKLLQLSNLELAEYCEQELERNPLLERDDESTPGERADEALSREDFSKASDLDQAAHENMYDGGEAPAPARVAEAPQGSLTDWTKVGSGNAFEGEDGIESSVAAATSLKDHLESQLSIAALLPEDRMILLALIDAVDETGYLRADPMDIAHRLGCEREDVEAVLGVLHGFDPVGVGARDLAECLSLQLKALDRLDPAMQALLTRLDLVARRDMSQLCALCGVDAEDIADMISEIRQLNPKPGLAFGAEPVTPVVPDVFVKEGPDGNWQIELNSETLPRLLVNNQYYGTVSRTARDKESKNYLADCLNNANWLVKSLDQRARTILKVASEIVRHQDAFLTHGVRHLRPLNLRIIAEAISMHESTVSRVTSNKYIATPRGLFELKYFFTASIQSVNGTESHSAEAVRDRIREMIENEEPREILSDDRIVALLTADGVNIARRTVAKYREALRIPSSVEPRRFWARAPGSGQKLSVNVTPFFIGIFDEHCRPARARCRFAGPQGAVQKAVAPGTRGPRPWPDAPVRASHFRNLGGTGTVGNHRRGGRDRHSPWSHDRSQDHHRYFHATRTRHRL

Samples

Sample ID Description Type Environment
1 3300031247 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-25 metaG Metagenome Rhizosphere
2 3300003214 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mCL Metagenome Endosphere
3 3300003215 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF Metagenome Endosphere
4 3300005327 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG Metagenome Rhizosphere
5 3300005335 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG Metagenome Rhizosphere
6 3300005336 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG Metagenome Rhizosphere
7 3300005339 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG Metagenome Rhizosphere
8 3300005341 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-1 metaG Metagenome Rhizosphere
9 3300005344 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG Metagenome Rhizosphere
10 3300005347 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG Metagenome Rhizosphere
11 3300005354 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG Metagenome Rhizosphere
12 3300005364 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG Metagenome Rhizosphere
13 3300005366 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG Metagenome Rhizosphere
14 3300005367 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG Metagenome Rhizosphere
15 3300005434 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG Metagenome Rhizosphere
16 3300005435 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG Metagenome Rhizosphere
17 3300005436 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG Metagenome Rhizosphere
18 3300005438 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-2 metaG Metagenome Rhizosphere
19 3300005439 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG Metagenome Rhizosphere
20 3300005458 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG Metagenome Rhizosphere
21 3300005459 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 Metagenome Rhizosphere
22 3300005530 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG Metagenome Rhizosphere
23 3300005539 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 Metagenome Rhizosphere
24 3300005545 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-2 metaG Metagenome Rhizosphere
25 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
26 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
27 3300005577 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 Metagenome Rhizosphere
28 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
29 3300005616 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 Metagenome Rhizosphere
30 3300005842 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 Metagenome Rhizosphere
31 3300006175 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG Metagenome Rhizosphere
32 3300006177 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-2 Metagenome Endosphere
33 3300006237 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2) (version 2) Metagenome Rhizosphere
34 3300006358 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 Metagenome Rhizosphere
35 3300006914 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5 Metagenome Rhizosphere
36 3300007076 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 Metagenome Rhizosphere
37 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
38 3300009148 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG Metagenome Rhizosphere
39 3300009174 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG Metagenome Rhizosphere
40 3300009176 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG Metagenome Rhizosphere
41 3300009177 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG Metagenome Rhizosphere
42 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
43 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
44 3300009553 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG Metagenome Rhizosphere
45 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
46 3300011119 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG Metagenome Rhizosphere
47 3300013100 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6-5 metaG Metagenome Rhizosphere
48 3300013102 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG Metagenome Rhizosphere
49 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
50 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
51 3300013297 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG Metagenome Rhizosphere
52 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
53 3300014325 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG Metagenome Rhizosphere
54 3300014968 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG Metagenome Rhizosphere
55 3300025231 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mMS (SPAdes) (version 2) Metagenome Endosphere
56 3300025261 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mCL (SPAdes) (version 2) Metagenome Endosphere
57 3300025297 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF (SPAdes) (version 2) Metagenome Endosphere
58 3300025903 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
59 3300025906 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
60 3300025909 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
61 3300025911 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
62 3300025912 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
63 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
64 3300025914 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
65 3300025915 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
66 3300025917 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
67 3300025919 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
68 3300025920 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
69 3300025921 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
70 3300025924 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
71 3300025926 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
72 3300025928 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
73 3300025929 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
74 3300025932 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
75 3300025934 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
76 3300025935 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
77 3300025941 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
78 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
79 3300025960 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
80 3300025961 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
81 3300025972 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
82 3300025981 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 (SPAdes) (version 2) Metagenome Rhizosphere
83 3300025986 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
84 3300026035 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes) (version 2) Metagenome Rhizosphere
85 3300026041 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes) (version 2) Metagenome Rhizosphere
86 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
87 3300026088 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes) (version 2) Metagenome Rhizosphere
88 3300026089 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes) (version 2) Metagenome Rhizosphere
89 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
90 3300026121 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
91 3300026142 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes) (version 2) Metagenome Rhizosphere
92 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
93 3300028381 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) Metagenome Rhizosphere
94 3300028556 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-22 metaG Metagenome Rhizosphere
95 3300028573 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-20-23 metaG Metagenome Rhizosphere
96 3300028577 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-21 metaG Metagenome Rhizosphere
97 3300028800 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG Metagenome Rhizosphere
98 3300031238 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-26 metaG Metagenome Rhizosphere
99 3300031240 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-27 metaG Metagenome Rhizosphere
100 3300031241 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-14-20 metaG Metagenome Rhizosphere
101 3300031249 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-19 metaG Metagenome Rhizosphere
102 3300031250 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-23 metaG Metagenome Rhizosphere
103 3300031251 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-21 metaG Metagenome Rhizosphere
104 3300031344 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-5-22 metaG Metagenome Rhizosphere
105 3300031548 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3 Metagenome Rhizosphere
106 3300031595 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-23 metaG Metagenome Rhizosphere
107 3300031711 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-26 metaG Metagenome Rhizosphere
108 3300031712 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB3-27 metaG Metagenome Rhizosphere
109 3300031730 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 19_EM Metagenome Unclassified
110 3300031824 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-2 Metagenome Rhizosphere
111 3300032004 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3 Metagenome Rhizosphere
112 3300035112 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_NoN_16 Metagenome Rhizosphere
113 3300035172 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_N_3 Metagenome Rhizosphere
114 3300035691 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_NoN_4 Metagenome Rhizosphere
115 3300035695 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_19 Metagenome Rhizosphere
116 3300036401 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_16 Metagenome Rhizosphere
117 3300037068 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_16 Metagenome Rhizosphere
118 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
119 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
120 3300039437 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 v2 Metagenome Unclassified
121 3300046530 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-866-Co1_10_5 rhizosphere Metagenome Rhizosphere
122 3300046538 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co1_12_7 rhizosphere Metagenome Rhizosphere
123 3300046543 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL1_28_5 rhizosphere Metagenome Rhizosphere
124 3300046557 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL1_25_34 rhizosphere Metagenome Rhizosphere
125 3300046648 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co3_15_40 rhizosphere Metagenome Rhizosphere
126 3300046679 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL2_50_4 rhizosphere Metagenome Rhizosphere
127 3300048924 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_3e N15 Metagenome Unclassified
128 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
129 3300049460 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWA-24-3-Co2_41_10 rhizosphere Metagenome Rhizosphere
130 3300049569 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_02 Metagenome Rhizosphere
131 3300049570 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_03 Metagenome Rhizosphere
132 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
133 3300049572 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 Metagenome Rhizosphere
134 3300049573 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_01 Metagenome Rhizosphere
135 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
136 3300049575 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_03 Metagenome Rhizosphere
137 3300049579 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 Metagenome Rhizosphere
138 3300049580 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_01 Metagenome Rhizosphere
139 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
140 3300049582 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_03 Metagenome Rhizosphere
141 3300049583 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_01 Metagenome Rhizosphere
142 3300049586 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 Metagenome Rhizosphere
143 3300049588 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_03 Metagenome Rhizosphere
144 3300049589 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_01 Metagenome Rhizosphere
145 3300049590 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_02 Metagenome Rhizosphere
146 3300049741 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_01 Metagenome Rhizosphere
147 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
148 3300049744 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_02 Metagenome Rhizosphere
149 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
150 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
151 3300050489 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-2 re-annotation Metagenome Endosphere
152 3300050512 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 re-annotation Metagenome Rhizosphere
153 3300050513 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 re-annotation Metagenome Rhizosphere
154 3300050514 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5 re-annotation Metagenome Rhizosphere
155 3300053087 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co3_14_51 endosphere Metagenome Endosphere
156 3300053103 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co1_30_3 endosphere Metagenome Endosphere
157 3300053108 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-133-Co2_50_25 endosphere Metagenome Endosphere
158 3300053119 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL1_25_34 endosphere Metagenome Endosphere
159 3300053136 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL2_62_7 endosphere Metagenome Endosphere
160 3300053140 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL1_33_12 endosphere Metagenome Endosphere
161 3300053151 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co1_22_4 endosphere Metagenome Endosphere
162 3300053154 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL2_38_7 endosphere Metagenome Endosphere
163 3300053161 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co3_16_51 endosphere Metagenome Endosphere
164 3300053163 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-4579-CL2_50_20 endosphere Metagenome Endosphere
165 3300054114 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_03 Metagenome Rhizosphere
166 3300060353 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_01 Metagenome Rhizosphere
167 2643221580 Devosia sp. Root635 Isolate Unclassified
168 2643221598 Phenylobacterium sp. Root700 Isolate Unclassified
169 2643221674 Devosia sp. Root436 Isolate Unclassified
170 2932401849 Devosia sp. 2618 Isolate Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 98.83
Metatranscriptomes 0
Isolates 1.17

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 7.04
Nodule 0
Rhizoplane 0
Rhizosphere 90.03
Stem 0
Stem Tuber 0
Unclassified 0

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0265340_10013804 3300031247 Bacteria 4234
2 JGI25165J46597_1000013 3300003214 Bacteria 402100
3 JGI25165J46597_1004596 3300003214 Bacteria 2909
4 JGI25153J46596_10001136 3300003215 Bacteria 16098
5 Ga0070658_10002358 3300005327 Bacteria 15835
6 Ga0070658_10126770 3300005327 Bacteria 2125
7 Ga0070666_10000260 3300005335 Bacteria 34878
8 Ga0070666_10046348 3300005335 Bacteria 2916
9 Ga0070666_10092003 3300005335 Bacteria 2084
10 Ga0070680_100002795 3300005336 Bacteria 12963
11 Ga0070660_100006376 3300005339 Bacteria 8178
12 Ga0070660_100017959 3300005339 Bacteria 5161
13 Ga0070660_100019262 3300005339 Bacteria 4997
14 Ga0070691_10002989 3300005341 Bacteria 7568
15 Ga0070691_10004788 3300005341 Bacteria 6161
16 Ga0070661_100000041 3300005344 Bacteria 99916
17 Ga0070668_100005741 3300005347 Bacteria 9204
18 Ga0070675_100117716 3300005354 Bacteria 2255
19 Ga0070673_100024692 3300005364 Bacteria 4411
20 Ga0070659_100024396 3300005366 Bacteria 4636
21 Ga0070667_100011475 3300005367 Bacteria 7327
22 Ga0070709_10004594 3300005434 Bacteria 7456
23 Ga0070714_100056442 3300005435 Bacteria 3359
24 Ga0070713_100000003 3300005436 Bacteria 245840
25 Ga0070713_100177125 3300005436 Bacteria 1914
26 Ga0070701_10036458 3300005438 Bacteria 2478
27 Ga0070711_100041192 3300005439 Bacteria 3118
28 Ga0070681_10000001 3300005458 Bacteria 946857
29 Ga0068867_100086054 3300005459 Bacteria 2377
30 Ga0070679_100004699 3300005530 Bacteria 12598
31 Ga0070679_100038666 3300005530 Bacteria 4743
32 Ga0070679_100040539 3300005530 Bacteria 4633
33 Ga0070679_100089430 3300005530 Bacteria 3066
34 Ga0068853_100001311 3300005539 Bacteria 17870
35 Ga0068853_100023383 3300005539 Bacteria 5173
36 Ga0068853_100031790 3300005539 Bacteria 4466
37 Ga0070695_100005828 3300005545 Bacteria 7265
38 Ga0070665_100004633 3300005548 Bacteria 14374
39 Ga0070665_100051690 3300005548 Bacteria 4121
40 Ga0068855_100000142 3300005563 Bacteria 92185
41 Ga0068855_100006915 3300005563 Bacteria 13759
42 Ga0068855_100010825 3300005563 Bacteria 11014
43 Ga0068855_100036170 3300005563 Bacteria 5879
44 Ga0068855_100144670 3300005563 Bacteria 2708
45 Ga0068857_100000050 3300005577 Bacteria 65116
46 Ga0068856_100014680 3300005614 Bacteria 7560
47 Ga0068856_100202218 3300005614 Bacteria 2001
48 Ga0068852_100006261 3300005616 Bacteria 8587
49 Ga0068852_100163441 3300005616 Bacteria 2080
50 Ga0068858_100021564 3300005842 Bacteria 6021
51 Ga0068858_100088711 3300005842 Bacteria 2877
52 Ga0070712_100000326 3300006175 Bacteria 26980
53 Ga0070712_100005593 3300006175 Bacteria 7776
54 Ga0075362_10001153 3300006177 Bacteria 8255
55 Ga0075362_10033851 3300006177 Bacteria 2224
56 Ga0097621_100008147 3300006237 Bacteria 7536
57 Ga0068871_100000015 3300006358 Bacteria 97550
58 Ga0075436_100000038 3300006914 Bacteria 82918
59 Ga0075435_100094469 3300007076 Bacteria 2472
60 Ga0105240_10004248 3300009093 Bacteria 21898
61 Ga0105240_10005507 3300009093 Bacteria 18867
62 Ga0105240_10013229 3300009093 Bacteria 11350
63 Ga0105240_10030765 3300009093 Bacteria 6973
64 Ga0105240_10032682 3300009093 Bacteria 6733
65 Ga0105240_10060100 3300009093 Bacteria 4739
66 Ga0105243_10001896 3300009148 Bacteria 17836
67 Ga0105241_10008292 3300009174 Bacteria 7648
68 Ga0105241_10022992 3300009174 Bacteria 4622
69 Ga0105241_10025651 3300009174 Bacteria 4381
70 Ga0105242_10006696 3300009176 Bacteria 8890
71 Ga0105248_10000013 3300009177 Bacteria 328864
72 Ga0105248_10031574 3300009177 Bacteria 5919
73 Ga0105237_10000053 3300009545 Bacteria 158890
74 Ga0105237_10003068 3300009545 Bacteria 20136
75 Ga0105237_10020905 3300009545 Bacteria 6737
76 Ga0105237_10024275 3300009545 Bacteria 6204
77 Ga0105237_10067252 3300009545 Bacteria 3577
78 Ga0105238_10003928 3300009551 Bacteria 14750
79 Ga0105238_10017441 3300009551 Bacteria 7296
80 Ga0105238_10032188 3300009551 Bacteria 5336
81 Ga0105238_10268894 3300009551 Bacteria 1685
82 Ga0105249_10112698 3300009553 Bacteria 2573
83 Ga0105239_10001462 3300010375 Bacteria 31410
84 Ga0105239_10003590 3300010375 Bacteria 18946
85 Ga0105239_10022302 3300010375 Bacteria 6980
86 Ga0105246_10028377 3300011119 Bacteria 3676
87 Ga0157373_10001769 3300013100 Bacteria 16440
88 Ga0157371_10018927 3300013102 Bacteria 5084
89 Ga0157370_10028545 3300013104 Bacteria 5487
90 Ga0157370_10123801 3300013104 Bacteria 2414
91 Ga0157369_10003941 3300013105 Bacteria 17611
92 Ga0157369_10126296 3300013105 Bacteria 2711
93 Ga0157378_10026791 3300013297 Bacteria 5083
94 Ga0157372_10034494 3300013307 Bacteria 5563
95 Ga0163163_10001131 3300014325 Bacteria 22661
96 Ga0163163_10190767 3300014325 Bacteria 2098
97 Ga0157379_10001517 3300014968 Bacteria 19118
98 Ga0157379_10003202 3300014968 Bacteria 13869
99 Ga0157379_10066469 3300014968 Bacteria 3223
100 Ga0157379_10137606 3300014968 Bacteria 2201
101 Ga0157379_10223274 3300014968 Bacteria 1707
102 Ga0207427_102970 3300025231 Bacteria 3958
103 Ga0209233_1000013 3300025261 Bacteria 1013785
104 Ga0209233_1002175 3300025261 Bacteria 7347
105 Ga0209233_1006417 3300025261 Bacteria 3793
106 Ga0209758_1000036 3300025297 Bacteria 441671
107 Ga0207680_10015387 3300025903 Bacteria 3991
108 Ga0207699_10002435 3300025906 Bacteria 8784
109 Ga0207705_10000390 3300025909 Bacteria 38824
110 Ga0207654_10002392 3300025911 Bacteria 9589
111 Ga0207707_10000001 3300025912 Bacteria 1212482
112 Ga0207707_10004041 3300025912 Bacteria 13006
113 Ga0207695_10000003 3300025913 Bacteria 1368691
114 Ga0207695_10026008 3300025913 Bacteria 6539
115 Ga0207695_10026386 3300025913 Bacteria 6484
116 Ga0207695_10063607 3300025913 Bacteria 3803
117 Ga0207671_10000555 3300025914 Bacteria 50279
118 Ga0207671_10005690 3300025914 Bacteria 11395
119 Ga0207671_10009600 3300025914 Bacteria 8066
120 Ga0207693_10000369 3300025915 Bacteria 41242
121 Ga0207660_10001013 3300025917 Bacteria 18630
122 Ga0207660_10001356 3300025917 Bacteria 16424
123 Ga0207657_10002224 3300025919 Bacteria 21049
124 Ga0207657_10006944 3300025919 Bacteria 11665
125 Ga0207657_10024876 3300025919 Bacteria 5535
126 Ga0207649_10000437 3300025920 Bacteria 30058
127 Ga0207652_10000353 3300025921 Bacteria 47513
128 Ga0207652_10002876 3300025921 Bacteria 14402
129 Ga0207652_10037380 3300025921 Bacteria 4110
130 Ga0207652_10067683 3300025921 Bacteria 3097
131 Ga0207652_10070158 3300025921 Bacteria 3043
132 Ga0207694_10000125 3300025924 Bacteria 81711
133 Ga0207694_10008634 3300025924 Bacteria 7692
134 Ga0207694_10046300 3300025924 Bacteria 3362
135 Ga0207659_10033150 3300025926 Bacteria 3552
136 Ga0207700_10000083 3300025928 Bacteria 58710
137 Ga0207700_10072877 3300025928 Bacteria 2650
138 Ga0207700_10125898 3300025928 Bacteria 2085
139 Ga0207664_10004717 3300025929 Bacteria 9253
140 Ga0207664_10047589 3300025929 Bacteria 3370
141 Ga0207690_10030959 3300025932 Bacteria 3419
142 Ga0207686_10003116 3300025934 Bacteria 8924
143 Ga0207709_10010796 3300025935 Bacteria 5029
144 Ga0207711_10000003 3300025941 Bacteria 1042791
145 Ga0207711_10010769 3300025941 Bacteria 7604
146 Ga0207667_10000092 3300025949 Bacteria 148077
147 Ga0207667_10040539 3300025949 Bacteria 4958
148 Ga0207667_10041081 3300025949 Bacteria 4920
149 Ga0207651_10041030 3300025960 Bacteria 3068
150 Ga0207712_10041984 3300025961 Bacteria 3147
151 Ga0207668_10012019 3300025972 Bacteria 5284
152 Ga0207640_10020196 3300025981 Bacteria 3952
153 Ga0207658_10009084 3300025986 Bacteria 6741
154 Ga0207658_10026260 3300025986 Bacteria 4082
155 Ga0207703_10019358 3300026035 Bacteria 5318
156 Ga0207703_10040995 3300026035 Bacteria 3708
157 Ga0207639_10032673 3300026041 Bacteria 3833
158 Ga0207639_10050903 3300026041 Bacteria 3148
159 Ga0207639_10053858 3300026041 Bacteria 3072
160 Ga0207639_10062760 3300026041 Bacteria 2875
161 Ga0207639_10070828 3300026041 Bacteria 2725
162 Ga0207639_10141534 3300026041 Bacteria 2005
163 Ga0207702_10000045 3300026078 Bacteria 144714
164 Ga0207702_10024763 3300026078 Bacteria 4979
165 Ga0207641_10099980 3300026088 Bacteria 2553
166 Ga0207648_10010010 3300026089 Bacteria 9020
167 Ga0207674_10000026 3300026116 Bacteria 151359
168 Ga0207674_10053735 3300026116 Bacteria 4104
169 Ga0207674_10178871 3300026116 Bacteria 2073
170 Ga0207683_10068142 3300026121 Bacteria 3141
171 Ga0207698_10005517 3300026142 Bacteria 7826
172 Ga0268266_10000708 3300028379 Bacteria 45085
173 Ga0268266_10002956 3300028379 Bacteria 17530
174 Ga0268266_10011691 3300028379 Bacteria 7616
175 Ga0268264_10087783 3300028381 Bacteria 2675
176 Ga0265337_1004798 3300028556 Bacteria 5535
177 Ga0265334_10001637 3300028573 Bacteria 10747
178 Ga0265318_10000447 3300028577 Bacteria 31118
179 Ga0265318_10006027 3300028577 Bacteria 5624
180 Ga0265338_10000017 3300028800 Bacteria 344481
181 Ga0265338_10004338 3300028800 Bacteria 19224
182 Ga0265338_10006800 3300028800 Bacteria 14410
183 Ga0265338_10010768 3300028800 Bacteria 10666
184 Ga0265338_10021711 3300028800 Bacteria 6679
185 Ga0265338_10108694 3300028800 Bacteria 2239
186 Ga0265332_10023861 3300031238 Bacteria 2695
187 Ga0265320_10000217 3300031240 Bacteria 46656
188 Ga0265325_10000008 3300031241 Bacteria 186174
189 Ga0265325_10000092 3300031241 Bacteria 63555
190 Ga0265325_10002516 3300031241 Bacteria 12332
191 Ga0265325_10015859 3300031241 Bacteria 4226
192 Ga0265325_10023108 3300031241 Bacteria 3400
193 Ga0265340_10000276 3300031247 Bacteria 26836
194 Ga0265340_10003116 3300031247 Bacteria 9401
195 Ga0265340_10019805 3300031247 Bacteria 3463
196 Ga0265339_10001046 3300031249 Bacteria 21077
197 Ga0265339_10009111 3300031249 Bacteria 6270
198 Ga0265339_10010871 3300031249 Bacteria 5628
199 Ga0265339_10028131 3300031249 Bacteria 3200
200 Ga0265331_10000020 3300031250 Bacteria 258149
201 Ga0265331_10008709 3300031250 Bacteria 5750
202 Ga0265331_10009066 3300031250 Bacteria 5619
203 Ga0265327_10000869 3300031251 Bacteria 44810
204 Ga0265327_10006845 3300031251 Bacteria 8984
205 Ga0265316_10022422 3300031344 Bacteria 5324
206 Ga0265316_10027957 3300031344 Bacteria 4659
207 Ga0265316_10065445 3300031344 Bacteria 2815
208 Ga0265316_10078569 3300031344 Bacteria 2533
209 Ga0307408_100177104 3300031548 Bacteria 1707
210 Ga0265313_10002285 3300031595 Bacteria 16811
211 Ga0265313_10003214 3300031595 Bacteria 13432
212 Ga0265313_10004608 3300031595 Bacteria 10465
213 Ga0265313_10024185 3300031595 Bacteria 3251
214 Ga0265314_10000188 3300031711 Bacteria 92043
215 Ga0265314_10001476 3300031711 Bacteria 26149
216 Ga0265314_10026953 3300031711 Bacteria 4310
217 Ga0265314_10045919 3300031711 Bacteria 3085
218 Ga0265342_10002290 3300031712 Bacteria 16669
219 Ga0265342_10011774 3300031712 Bacteria 5963
220 Ga0265342_10015478 3300031712 Bacteria 5014
221 Ga0307516_10021177 3300031730 Bacteria 6700
222 Ga0307516_10057415 3300031730 Bacteria 3792
223 Ga0307413_10028910 3300031824 Bacteria 3094
224 Ga0307414_10023268 3300032004 Bacteria 3927
225 Ga0307414_10029900 3300032004 Bacteria 3552
226 Ga0373932_0009946 3300035112 Bacteria 2295
227 Ga0373955_0004019 3300035172 Bacteria 6491
228 Ga0373931_0058601 3300035691 Bacteria 2069
229 Ga0373927_0029913 3300035695 Bacteria 3553
230 Ga0373937_0002752 3300036401 Bacteria 14665
231 Ga0373925_0051076 3300037068 Bacteria 3085
232 Ga0373925_0079211 3300037068 Bacteria 2496
233 Ga0395900_0219999 3300037418 Bacteria 1914
234 Ga0395898_0057155 3300037466 Bacteria 3802
235 Ga0436365_0238484 3300039437 Bacteria 4402
236 Ga0436365_1650855 3300039437 Bacteria 128546
237 Ga0495654_0048037 3300046530 Bacteria 2096
238 Ga0495609_0009095 3300046538 Bacteria 4823
239 Ga0495645_0038411 3300046543 Bacteria 3492
240 Ga0495622_0001953 3300046557 Bacteria 10115
241 Ga0495611_0034104 3300046648 Bacteria 2249
242 Ga0495623_0045574 3300046679 Bacteria 2785
243 Ga0496121_0005260 3300048924 Bacteria 16719
244 Ga0496126_0004966 3300048929 Bacteria 15516
245 Ga0496126_0010949 3300048929 Bacteria 9447
246 Ga0495682_0002045 3300049460 Bacteria 9895
247 Ga0501032_0005328 3300049569 Bacteria 9569
248 Ga0501033_0006428 3300049570 Bacteria 9201
249 Ga0501033_0012191 3300049570 Bacteria 6561
250 Ga0501033_0029285 3300049570 Bacteria 4138
251 Ga0501033_0037436 3300049570 Bacteria 3632
252 Ga0501033_0053181 3300049570 Bacteria 2999
253 Ga0501034_0009428 3300049571 Bacteria 10218
254 Ga0501034_0014496 3300049571 Bacteria 8117
255 Ga0501034_0035764 3300049571 Bacteria 5034
256 Ga0501036_0007778 3300049572 Bacteria 8765
257 Ga0501036_0033444 3300049572 Bacteria 4349
258 Ga0501037_0060519 3300049573 Bacteria 2762
259 Ga0501038_0002891 3300049574 Bacteria 16020
260 Ga0501038_0038455 3300049574 Bacteria 4190
261 Ga0501038_0071105 3300049574 Bacteria 2952
262 Ga0501038_0090764 3300049574 Bacteria 2560
263 Ga0501039_0005124 3300049575 Bacteria 9928
264 Ga0501039_0046275 3300049575 Bacteria 3361
265 Ga0501043_0010886 3300049579 Bacteria 7122
266 Ga0501043_0022476 3300049579 Bacteria 4944
267 Ga0501043_0056505 3300049579 Bacteria 3083
268 Ga0501046_0000911 3300049580 Bacteria 28909
269 Ga0501046_0015421 3300049580 Bacteria 6420
270 Ga0501046_0049813 3300049580 Bacteria 3312
271 Ga0501047_0006888 3300049581 Bacteria 10680
272 Ga0501047_0011126 3300049581 Bacteria 8517
273 Ga0501047_0012279 3300049581 Bacteria 8107
274 Ga0501047_0012552 3300049581 Bacteria 8023
275 Ga0501047_0017251 3300049581 Bacteria 6912
276 Ga0501047_0020364 3300049581 Bacteria 6370
277 Ga0501047_0030147 3300049581 Bacteria 5230
278 Ga0501047_0082882 3300049581 Bacteria 3082
279 Ga0501048_0156747 3300049582 Bacteria 1611
280 Ga0501067_0000500 3300049583 Bacteria 21522
281 Ga0501070_0000015 3300049586 Bacteria 179449
282 Ga0501070_0003152 3300049586 Bacteria 14359
283 Ga0501070_0004344 3300049586 Bacteria 12187
284 Ga0501072_0003562 3300049588 Bacteria 11718
285 Ga0501073_0010263 3300049589 Bacteria 6877
286 Ga0501073_0015564 3300049589 Bacteria 5517
287 Ga0501073_0055976 3300049589 Bacteria 2759
288 Ga0501073_0075635 3300049589 Bacteria 2344
289 Ga0501074_0021023 3300049590 Bacteria 4739
290 Ga0501079_0003469 3300049741 Bacteria 11592
291 Ga0501080_0004405 3300049742 Bacteria 12513
292 Ga0501080_0005131 3300049742 Bacteria 11667
293 Ga0501080_0022475 3300049742 Bacteria 5842
294 Ga0501080_0023136 3300049742 Bacteria 5762
295 Ga0501080_0047317 3300049742 Bacteria 4004
296 Ga0501080_0056725 3300049742 Bacteria 3646
297 Ga0501080_0150656 3300049742 Bacteria 2150
298 Ga0501083_0007460 3300049744 Bacteria 7750
299 Ga0501083_0055352 3300049744 Bacteria 2660
300 Ga0501035_0007755 3300049822 Bacteria 10027
301 Ga0501035_0008856 3300049822 Bacteria 9364
302 Ga0501035_0009716 3300049822 Bacteria 8949
303 Ga0501035_0020912 3300049822 Bacteria 6014
304 Ga0501035_0023985 3300049822 Bacteria 5598
305 Ga0501035_0038788 3300049822 Bacteria 4312
306 Ga0501035_0079471 3300049822 Bacteria 2897
307 Ga0501035_0109668 3300049822 Bacteria 2419
308 Ga0501044_0000530 3300049823 Bacteria 46371
309 Ga0501044_0000612 3300049823 Bacteria 43350
310 Ga0501044_0008265 3300049823 Bacteria 11412
311 Ga0501044_0008804 3300049823 Bacteria 11038
312 Ga0501044_0011914 3300049823 Bacteria 9422
313 Ga0501044_0018391 3300049823 Bacteria 7488
314 Ga0501044_0061739 3300049823 Bacteria 3833
315 Ga0501044_0064630 3300049823 Bacteria 3735
316 nmdc:mga03683_20016_c1 3300050489 Bacteria 2562
317 nmdc:mga03683_52127_c1 3300050489 Bacteria 1710
318 nmdc:mga0n895_158053_c1 3300050512 Bacteria 2298
319 nmdc:mga0rr50_72867_c1 3300050513 Bacteria 2624
320 nmdc:mga08x19_95_c1 3300050514 Bacteria 78182
321 Ga0500643_000021 3300053087 Bacteria 284326
322 Ga0500555_010669 3300053103 Bacteria 2637
323 Ga0500555_019833 3300053103 Bacteria 1936
324 Ga0500562_000093 3300053108 Bacteria 37199
325 Ga0500595_000559 3300053119 Bacteria 22205
326 Ga0500595_016747 3300053119 Bacteria 2724
327 Ga0500559_0014129 3300053136 Bacteria 3375
328 Ga0500573_0000033 3300053140 Bacteria 117720
329 Ga0500604_0001866 3300053151 Bacteria 5848
330 Ga0500619_002277 3300053154 Bacteria 3658
331 Ga0500634_0003120 3300053161 Bacteria 7278
332 Ga0500639_009781 3300053163 Bacteria 5013
333 Ga0501084_0000769 3300054114 Bacteria 24411
334 Ga0501084_0007212 3300054114 Bacteria 9161
335 Ga0501084_0051555 3300054114 Bacteria 3444
336 Ga0501082_0003476 3300060353 Bacteria 13739
337 Ga0501082_0114893 3300060353 Bacteria 2331
338 2643910747 2643221580 Bacteria 3816678
339 2643998675 2643221598 Bacteria 4578346
340 2644412013 2643221674 Bacteria 3919126
341 2932405345 2932401849 Bacteria 4262978
342 Ga0265340_10013804
343 JGI25165J46597_1000013
344 JGI25165J46597_1004596
345 JGI25153J46596_10001136
346 Ga0070658_10002358
347 Ga0070658_10126770
348 Ga0070666_10000260
349 Ga0070666_10046348
350 Ga0070666_10092003
351 Ga0070680_100002795
352 Ga0070660_100006376
353 Ga0070660_100017959
354 Ga0070660_100019262
355 Ga0070691_10002989
356 Ga0070691_10004788
357 Ga0070661_100000041
358 Ga0070668_100005741
359 Ga0070675_100117716
360 Ga0070673_100024692
361 Ga0070659_100024396
362 Ga0070667_100011475
363 Ga0070709_10004594
364 Ga0070714_100056442
365 Ga0070713_100000003
366 Ga0070713_100177125
367 Ga0070701_10036458
368 Ga0070711_100041192
369 Ga0070681_10000001
370 Ga0068867_100086054
371 Ga0070679_100004699
372 Ga0070679_100038666
373 Ga0070679_100040539
374 Ga0070679_100089430
375 Ga0068853_100001311
376 Ga0068853_100023383
377 Ga0068853_100031790
378 Ga0070695_100005828
379 Ga0070665_100004633
380 Ga0070665_100051690
381 Ga0068855_100000142
382 Ga0068855_100006915
383 Ga0068855_100010825
384 Ga0068855_100036170
385 Ga0068855_100144670
386 Ga0068857_100000050
387 Ga0068856_100014680
388 Ga0068856_100202218
389 Ga0068852_100006261
390 Ga0068852_100163441
391 Ga0068858_100021564
392 Ga0068858_100088711
393 Ga0070712_100000326
394 Ga0070712_100005593
395 Ga0075362_10001153
396 Ga0075362_10033851
397 Ga0097621_100008147
398 Ga0068871_100000015
399 Ga0075436_100000038
400 Ga0075435_100094469
401 Ga0105240_10004248
402 Ga0105240_10005507
403 Ga0105240_10013229
404 Ga0105240_10030765
405 Ga0105240_10032682
406 Ga0105240_10060100
407 Ga0105243_10001896
408 Ga0105241_10008292
409 Ga0105241_10022992
410 Ga0105241_10025651
411 Ga0105242_10006696
412 Ga0105248_10000013
413 Ga0105248_10031574
414 Ga0105237_10000053
415 Ga0105237_10003068
416 Ga0105237_10020905
417 Ga0105237_10024275
418 Ga0105237_10067252
419 Ga0105238_10003928
420 Ga0105238_10017441
421 Ga0105238_10032188
422 Ga0105238_10268894
423 Ga0105249_10112698
424 Ga0105239_10001462
425 Ga0105239_10003590
426 Ga0105239_10022302
427 Ga0105246_10028377
428 Ga0157373_10001769
429 Ga0157371_10018927
430 Ga0157370_10028545
431 Ga0157370_10123801
432 Ga0157369_10003941
433 Ga0157369_10126296
434 Ga0157378_10026791
435 Ga0157372_10034494
436 Ga0163163_10001131
437 Ga0163163_10190767
438 Ga0157379_10001517
439 Ga0157379_10003202
440 Ga0157379_10066469
441 Ga0157379_10137606
442 Ga0157379_10223274
443 Ga0207427_102970
444 Ga0209233_1000013
445 Ga0209233_1002175
446 Ga0209233_1006417
447 Ga0209758_1000036
448 Ga0207680_10015387
449 Ga0207699_10002435
450 Ga0207705_10000390
451 Ga0207654_10002392
452 Ga0207707_10000001
453 Ga0207707_10004041
454 Ga0207695_10000003
455 Ga0207695_10026008
456 Ga0207695_10026386
457 Ga0207695_10063607
458 Ga0207671_10000555
459 Ga0207671_10005690
460 Ga0207671_10009600
461 Ga0207693_10000369
462 Ga0207660_10001013
463 Ga0207660_10001356
464 Ga0207657_10002224
465 Ga0207657_10006944
466 Ga0207657_10024876
467 Ga0207649_10000437
468 Ga0207652_10000353
469 Ga0207652_10002876
470 Ga0207652_10037380
471 Ga0207652_10067683
472 Ga0207652_10070158
473 Ga0207694_10000125
474 Ga0207694_10008634
475 Ga0207694_10046300
476 Ga0207659_10033150
477 Ga0207700_10000083
478 Ga0207700_10072877
479 Ga0207700_10125898
480 Ga0207664_10004717
481 Ga0207664_10047589
482 Ga0207690_10030959
483 Ga0207686_10003116
484 Ga0207709_10010796
485 Ga0207711_10000003
486 Ga0207711_10010769
487 Ga0207667_10000092
488 Ga0207667_10040539
489 Ga0207667_10041081
490 Ga0207651_10041030
491 Ga0207712_10041984
492 Ga0207668_10012019
493 Ga0207640_10020196
494 Ga0207658_10009084
495 Ga0207658_10026260
496 Ga0207703_10019358
497 Ga0207703_10040995
498 Ga0207639_10032673
499 Ga0207639_10050903
500 Ga0207639_10053858
501 Ga0207639_10062760
502 Ga0207639_10070828
503 Ga0207639_10141534
504 Ga0207702_10000045
505 Ga0207702_10024763
506 Ga0207641_10099980
507 Ga0207648_10010010
508 Ga0207674_10000026
509 Ga0207674_10053735
510 Ga0207674_10178871
511 Ga0207683_10068142
512 Ga0207698_10005517
513 Ga0268266_10000708
514 Ga0268266_10002956
515 Ga0268266_10011691
516 Ga0268264_10087783
517 Ga0265337_1004798
518 Ga0265334_10001637
519 Ga0265318_10000447
520 Ga0265318_10006027
521 Ga0265338_10000017
522 Ga0265338_10004338
523 Ga0265338_10006800
524 Ga0265338_10010768
525 Ga0265338_10021711
526 Ga0265338_10108694
527 Ga0265332_10023861
528 Ga0265320_10000217
529 Ga0265325_10000008
530 Ga0265325_10000092
531 Ga0265325_10002516
532 Ga0265325_10015859
533 Ga0265325_10023108
534 Ga0265340_10000276
535 Ga0265340_10003116
536 Ga0265340_10019805
537 Ga0265339_10001046
538 Ga0265339_10009111
539 Ga0265339_10010871
540 Ga0265339_10028131
541 Ga0265331_10000020
542 Ga0265331_10008709
543 Ga0265331_10009066
544 Ga0265327_10000869
545 Ga0265327_10006845
546 Ga0265316_10022422
547 Ga0265316_10027957
548 Ga0265316_10065445
549 Ga0265316_10078569
550 Ga0307408_100177104
551 Ga0265313_10002285
552 Ga0265313_10003214
553 Ga0265313_10004608
554 Ga0265313_10024185
555 Ga0265314_10000188
556 Ga0265314_10001476
557 Ga0265314_10026953
558 Ga0265314_10045919
559 Ga0265342_10002290
560 Ga0265342_10011774
561 Ga0265342_10015478
562 Ga0307516_10021177
563 Ga0307516_10057415
564 Ga0307413_10028910
565 Ga0307414_10023268
566 Ga0307414_10029900
567 Ga0373932_0009946
568 Ga0373955_0004019
569 Ga0373931_0058601
570 Ga0373927_0029913
571 Ga0373937_0002752
572 Ga0373925_0051076
573 Ga0373925_0079211
574 Ga0395900_0219999
575 Ga0395898_0057155
576 Ga0436365_0238484
577 Ga0436365_1650855
578 Ga0495654_0048037
579 Ga0495609_0009095
580 Ga0495645_0038411
581 Ga0495622_0001953
582 Ga0495611_0034104
583 Ga0495623_0045574
584 Ga0496121_0005260
585 Ga0496126_0004966
586 Ga0496126_0010949
587 Ga0495682_0002045
588 Ga0501032_0005328
589 Ga0501033_0006428
590 Ga0501033_0012191
591 Ga0501033_0029285
592 Ga0501033_0037436
593 Ga0501033_0053181
594 Ga0501034_0009428
595 Ga0501034_0014496
596 Ga0501034_0035764
597 Ga0501036_0007778
598 Ga0501036_0033444
599 Ga0501037_0060519
600 Ga0501038_0002891
601 Ga0501038_0038455
602 Ga0501038_0071105
603 Ga0501038_0090764
604 Ga0501039_0005124
605 Ga0501039_0046275
606 Ga0501043_0010886
607 Ga0501043_0022476
608 Ga0501043_0056505
609 Ga0501046_0000911
610 Ga0501046_0015421
611 Ga0501046_0049813
612 Ga0501047_0006888
613 Ga0501047_0011126
614 Ga0501047_0012279
615 Ga0501047_0012552
616 Ga0501047_0017251
617 Ga0501047_0020364
618 Ga0501047_0030147
619 Ga0501047_0082882
620 Ga0501048_0156747
621 Ga0501067_0000500
622 Ga0501070_0000015
623 Ga0501070_0003152
624 Ga0501070_0004344
625 Ga0501072_0003562
626 Ga0501073_0010263
627 Ga0501073_0015564
628 Ga0501073_0055976
629 Ga0501073_0075635
630 Ga0501074_0021023
631 Ga0501079_0003469
632 Ga0501080_0004405
633 Ga0501080_0005131
634 Ga0501080_0022475
635 Ga0501080_0023136
636 Ga0501080_0047317
637 Ga0501080_0056725
638 Ga0501080_0150656
639 Ga0501083_0007460
640 Ga0501083_0055352
641 Ga0501035_0007755
642 Ga0501035_0008856
643 Ga0501035_0009716
644 Ga0501035_0020912
645 Ga0501035_0023985
646 Ga0501035_0038788
647 Ga0501035_0079471
648 Ga0501035_0109668
649 Ga0501044_0000530
650 Ga0501044_0000612
651 Ga0501044_0008265
652 Ga0501044_0008804
653 Ga0501044_0011914
654 Ga0501044_0018391
655 Ga0501044_0061739
656 Ga0501044_0064630
657 nmdc:mga03683_20016_c1
658 nmdc:mga03683_52127_c1
659 nmdc:mga0n895_158053_c1
660 nmdc:mga0rr50_72867_c1
661 nmdc:mga08x19_95_c1
662 Ga0500643_000021
663 Ga0500555_010669
664 Ga0500555_019833
665 Ga0500562_000093
666 Ga0500595_000559
667 Ga0500595_016747
668 Ga0500559_0014129
669 Ga0500573_0000033
670 Ga0500604_0001866
671 Ga0500619_002277
672 Ga0500634_0003120
673 Ga0500639_009781
674 Ga0501084_0000769
675 Ga0501084_0007212
676 Ga0501084_0051555
677 Ga0501082_0003476
678 Ga0501082_0114893
679 2643910747
680 2643998675
681 2644412013
682 2932405345

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF04552

Sigma54_DBD

Sigma-54, DNA binding domain

324

484

0.98

PF00309

Sigma54_AID

Sigma-54 factor, Activator interacting domain (AID)

7

52

0.97

PF04963

Sigma54_CBD

Sigma-54 factor, core binding domain

122

310

0.96

Structural Annotation

Top 5 Hits

ID Description Score Start End
4a12-assembly1.cif.gz_B structure of the global transcription regulator fapr from staphylococcus aureus in complex with dna operator 0.8966 429 496
2o9l-assembly1.cif.gz_A amber refined nmr structure of the sigma-54 rpon domain bound to the-24 promoter element 0.8675 434 487
2p5l-assembly2.cif.gz_H crystal structure of a dimer of n-terminal domains of ahrc in complex with an 18bp dna operator site 0.8652 433 479
2ahq-assembly1.cif.gz_A solution structure of the c-terminal rpon domain of sigma-54 from aquifex aeolicus 0.8012 433 478
2o9l-assembly1.cif.gz_A amber refined nmr structure of the sigma-54 rpon domain bound to the-24 promoter element 0.7467 434 487
ID Description Score Start End Superfamily
2o9lA01 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Homeodomain-like 0.8675 434 487 1.10.10.60
3lajA01 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.8661 434 478 1.10.10.10
2p5lH00 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.8652 433 479 1.10.10.10
2p5lC00 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.8554 433 479 1.10.10.10
5ui5V01 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;RNA polymerase sigma-54 factor, core-binding domain 0.8543 139 207 1.10.10.1330
ID Description Score Start End GO Terms
AF-A0A519Y5H6-F1-model_v4 deleted 0.9946 352 495
AF-A0A4Q0S3Q9-F1-model_v4 RNA polymerase sigma54 factor 0.9917 328 488 GO:0001216
GO:0016987
AF-A0A836TNG6-F1-model_v4 RNA polymerase sigma-54 factor 0.9866 289 493 GO:0001216
GO:0016987
AF-A0A529XBV5-F1-model_v4 deleted 0.9844 322 497
AF-A0A3N5P7X3-F1-model_v4 RNA polymerase sigma factor 54 DNA-binding domain-containing protein 0.981 326 488 GO:0001216
GO:0016987

Map