F415003

General Info

Members Datasets Scaffolds Average Seq Length
342 221 684 180

Family's Representative Sequence

Representative Sequence 3300003775|Ga0055524_1000314|Ga0055524_100031413
Length 171
Sequence MTATSTATSTVSRVALVDPKQAQGDVKVVLDQIQGAFGATPAMFRAVANSPAALKSLWGSFGALGGGVIPARLGEQIAVAVADRNACEYCLAAHTMLGRKAGASALRFALKVVNDRAQVTDADVQSLREAGFDDGAIVEILAHVALNLFTNYVNVAFAVPVDFPSVKLRRG

Samples

Sample ID Description Type Environment
1 3300003775 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mCL_r2 Metagenome Endosphere
2 3300002704 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mLB Metagenome Unclassified
3 3300002705 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mMS Metagenome Unclassified
4 3300002738 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mTSA Metagenome Unclassified
5 3300002741 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mCL Metagenome Unclassified
6 3300002773 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMS Metagenome Endosphere
7 3300002774 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mTSA Metagenome Endosphere
8 3300002987 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mLB Metagenome Endosphere
9 3300003187 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mLB Metagenome Endosphere
10 3300003215 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF Metagenome Endosphere
11 3300003320 Sugarcane root Sample H2 Metagenome Unclassified
12 3300003323 Sugarcane root Sample H1 Metagenome Unclassified
13 3300003354 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMS Metagenome Endosphere
14 3300003374 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMF Metagenome Endosphere
15 3300003771 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMF_r2 Metagenome Endosphere
16 3300003773 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mTSA_r2 Metagenome Endosphere
17 3300003781 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mLB_r2 Metagenome Endosphere
18 3300003784 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mLB_r2 Metagenome Endosphere
19 3300003790 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMS_r2 Metagenome Endosphere
20 3300003791 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 Metagenome Endosphere
21 3300003792 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mMS_r2 Metagenome Endosphere
22 3300003794 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 Metagenome Endosphere
23 3300004625 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mMF_r2 Metagenome Endosphere
24 3300005262 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMF (version 2) (version 3) Metagenome Endosphere
25 3300005339 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG Metagenome Rhizosphere
26 3300005366 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG Metagenome Rhizosphere
27 3300005457 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG Metagenome Rhizosphere
28 3300005458 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG Metagenome Rhizosphere
29 3300005530 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG Metagenome Rhizosphere
30 3300005985 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
31 3300006051 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 Metagenome Endosphere
32 3300006177 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-2 Metagenome Endosphere
33 3300006186 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-4 Metagenome Endosphere
34 3300006195 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 Metagenome Endosphere
35 3300006353 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 Metagenome Endosphere
36 3300009011 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-4 metaG Metagenome Rhizosphere
37 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
38 3300009148 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG Metagenome Rhizosphere
39 3300012497 Arabidopsis rhizosphere microbial communities from North Carolina - M.Cvi.2.old.240510 Metagenome Rhizosphere
40 3300013100 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6-5 metaG Metagenome Rhizosphere
41 3300014326 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG Metagenome Rhizosphere
42 3300014497 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-129_1 metaG Metagenome Rhizosphere
43 3300017792 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG Metagenome Rhizosphere
44 3300025206 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mLB (SPAdes) (version 2) Metagenome Unclassified
45 3300025208 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mTSA (SPAdes) (version 2) Metagenome Endosphere
46 3300025245 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mTSA (SPAdes) (version 3) Metagenome Endosphere
47 3300025246 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mTSA (SPAdes) (version 2) Metagenome Unclassified
48 3300025250 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mCL (SPAdes) (version 2) Metagenome Unclassified
49 3300025253 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
50 3300025256 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mMS (SPAdes) (version 2) Metagenome Unclassified
51 3300025258 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMS (SPAdes) (version 3) Metagenome Endosphere
52 3300025263 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mTSA_r2 (SPAdes) (version 3) Metagenome Endosphere
53 3300025273 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMS_r2 (SPAdes) (version 3) Metagenome Endosphere
54 3300025284 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mLB (SPAdes) (version 2) Metagenome Endosphere
55 3300025291 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mLB_r2 (SPAdes) (version 3) Metagenome Endosphere
56 3300025292 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mLB_r2 (SPAdes) (version 2) Metagenome Endosphere
57 3300025294 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mLB (SPAdes) (version 2) Metagenome Endosphere
58 3300025295 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMF_r2 (SPAdes) (version 3) Metagenome Endosphere
59 3300025297 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF (SPAdes) (version 2) Metagenome Endosphere
60 3300025298 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 (SPAdes) (version 2) Metagenome Endosphere
61 3300025299 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mCL_r2 (SPAdes) (version 3) Metagenome Endosphere
62 3300025302 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMS (SPAdes) (version 2) Metagenome Endosphere
63 3300025303 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mMS_r2 (SPAdes) (version 2) Metagenome Endosphere
64 3300025304 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
65 3300025912 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
66 3300025919 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
67 3300025921 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
68 3300025933 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
69 3300025935 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
70 3300027471 Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M3 AM (SPAdes) (version 2) Metagenome Rhizosphere
71 3300027876 Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M3 S PM (SPAdes) (version 2) Metagenome Rhizosphere
72 3300028794 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM Metagenome Unclassified
73 3300030734 Rhizosphere soil microbial communities in healthy wheat plant from Wellcamp field in Toowoomba, Australia - sample 5 Metagenome Rhizosphere
74 3300031239 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-24 metaG Metagenome Rhizosphere
75 3300031251 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-21 metaG Metagenome Rhizosphere
76 3300031456 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 15_EM Metagenome Unclassified
77 3300031548 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3 Metagenome Rhizosphere
78 3300031730 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 19_EM Metagenome Unclassified
79 3300031731 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-1 Metagenome Rhizosphere
80 3300031824 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-2 Metagenome Rhizosphere
81 3300031901 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2 Metagenome Rhizosphere
82 3300031911 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1 Metagenome Rhizosphere
83 3300031995 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2 Metagenome Rhizosphere
84 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
85 3300032004 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3 Metagenome Rhizosphere
86 3300032005 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-1 Metagenome Rhizosphere
87 3300032126 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-2 Metagenome Rhizosphere
88 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
89 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
90 3300038705 Coralloid root microbial communities from Raymundo Flores, Chiapas, Mexico - RF1-T1 Metagenome Unclassified
91 3300039145 Coralloid root microbial communities from Jiquipilas, Chiapas, Mexico - JP6-T1 Metagenome Unclassified
92 3300041404 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0216DE14Z070717_5272 Metagenome Rhizosphere
93 3300041413 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - SB0710WE14Z080117_6839 Metagenome Rhizosphere
94 3300041452 Perennial ryegrass root microbial community from Lincoln, Canterbury, New Zealand - RGR17_4 MetaG Metagenome Rhizoplane
95 3300041459 Perennial ryegrass root microbial community from Lincoln, Canterbury, New Zealand - RGR18_11 MetaG Metagenome Rhizoplane
96 3300041463 Perennial ryegrass root microbial community from Lincoln, Canterbury, New Zealand - RGR18_7 MetaG Metagenome Rhizoplane
97 3300041509 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR17_6 MetaG Metagenome Unclassified
98 3300041512 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR18_11 MetaG Metagenome Unclassified
99 3300041997 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0317DE14Z082817_5607 Metagenome Rhizosphere
100 3300041999 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0821WE14Z070717_5297 Metagenome Rhizosphere
101 3300042000 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0512FE14Z081617_5539 Metagenome Rhizosphere
102 3300042004 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0612WE14Z082817_5619 Metagenome Rhizosphere
103 3300042006 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0612WE14Z080117_5437 Metagenome Rhizosphere
104 3300042007 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0612DE14Z070717_5290 Metagenome Rhizosphere
105 3300042014 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0216WE14Z070717_5275 Metagenome Rhizosphere
106 3300042120 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0913L_E14_082316_2192 Metagenome Rhizosphere
107 3300042127 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC1030F_E14_070516_91 Metagenome Rhizosphere
108 3300042129 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0624L_E14_070516_95 Metagenome Rhizosphere
109 3300042130 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC1030L_E14_070516_97 Metagenome Rhizosphere
110 3300042435 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0503WE14Z082817_5613 Metagenome Rhizosphere
111 3300042437 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0821LE14Z081617_5554 Metagenome Rhizosphere
112 3300042530 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0530L_E14_082316_2047 Metagenome Rhizosphere
113 3300042533 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0826F_E14_072516_1472 Metagenome Rhizosphere
114 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
115 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
116 3300046453 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co3_8_57 rhizosphere Metagenome Rhizosphere
117 3300046460 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co3_31_37 rhizosphere Metagenome Rhizosphere
118 3300046506 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co1_30_3 rhizosphere Metagenome Rhizosphere
119 3300046507 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co2_62_14 rhizosphere Metagenome Rhizosphere
120 3300046515 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co2_62_25 rhizosphere Metagenome Rhizosphere
121 3300046519 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co2_51_16 rhizosphere Metagenome Rhizosphere
122 3300046522 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 rhizosphere Metagenome Rhizosphere
123 3300046525 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co1_23_6 rhizosphere Metagenome Rhizosphere
124 3300046558 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co3_6_53 rhizosphere Metagenome Rhizosphere
125 3300046694 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 rhizosphere Metagenome Rhizosphere
126 3300047472 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co2_54_22 rhizosphere Metagenome Rhizosphere
127 3300048911 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8v unlabeled Metagenome Rhizoplane
128 3300048912 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8w unlabeled Metagenome Rhizoplane
129 3300048913 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4c N15 Metagenome Rhizoplane
130 3300048917 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6c N15 Metagenome Rhizoplane
131 3300048919 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_7x unlabeled Metagenome Unclassified
132 3300048920 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1e N15 Metagenome Unclassified
133 3300048921 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1f N15 Metagenome Unclassified
134 3300048922 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2e N15 Metagenome Unclassified
135 3300048923 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2f N15 Metagenome Unclassified
136 3300048924 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_3e N15 Metagenome Unclassified
137 3300048925 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8x unlabeled Metagenome Unclassified
138 3300048926 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8y unlabeled Metagenome Unclassified
139 3300048927 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_4e N15 Metagenome Unclassified
140 3300048928 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_5e N15 Metagenome Unclassified
141 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
142 3300049523 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - J25_B_7_control Metagenome Rhizosphere
143 3300049579 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 Metagenome Rhizosphere
144 3300049593 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_02 Metagenome Rhizosphere
145 3300049661 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - I5_B_0_control Metagenome Rhizosphere
146 3300049665 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - H4_A_2_drought Metagenome Rhizosphere
147 3300049668 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - I4_B_2_drought Metagenome Rhizosphere
148 3300049669 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - C1_B_2_drought Metagenome Rhizosphere
149 3300049670 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - F4_B_2_drought Metagenome Rhizosphere
150 3300049687 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - F14_A_4_drought Metagenome Rhizosphere
151 3300049704 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - G2_A_2_control Metagenome Rhizosphere
152 3300049706 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - J2_B_2_control Metagenome Rhizosphere
153 3300049757 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - F2_B_2_control Metagenome Rhizosphere
154 3300049760 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - F12_A_4_control Metagenome Rhizosphere
155 3300049761 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - I14_A_4_control Metagenome Rhizosphere
156 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
157 3300050489 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-2 re-annotation Metagenome Endosphere
158 3300050491 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 re-annotation Metagenome Endosphere
159 3300050492 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 re-annotation Metagenome Endosphere
160 3300050493 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 re-annotation Metagenome Endosphere
161 3300050496 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 re-annotation Metagenome Endosphere
162 3300050511 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation Metagenome Rhizosphere
163 3300050516 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-4 re-annotation Metagenome Endosphere
164 3300053080 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-905-CL1_32_20 endosphere Metagenome Endosphere
165 3300053090 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co3_31_39 endosphere Metagenome Endosphere
166 3300053094 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-234-CL1_24_28 endosphere Metagenome Endosphere
167 3300053098 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co1_16_8 endosphere Metagenome Endosphere
168 3300053103 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co1_30_3 endosphere Metagenome Endosphere
169 3300053117 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co2_62_25 endosphere Metagenome Endosphere
170 3300053121 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL2_42_16 endosphere Metagenome Endosphere
171 3300053129 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-866-Co2_58_19 endosphere Metagenome Endosphere
172 3300053131 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co3_35_48 endosphere Metagenome Endosphere
173 3300053136 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL2_62_7 endosphere Metagenome Endosphere
174 3300053140 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL1_33_12 endosphere Metagenome Endosphere
175 3300053151 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co1_22_4 endosphere Metagenome Endosphere
176 3300053156 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 endosphere Metagenome Endosphere
177 3300053724 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co3_21_62 endosphere Metagenome Endosphere
178 3300055283 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-4579-CL1_25_23_RD_R2 endosphere Metagenome Endosphere
179 2547132130 Stenotrophomonas maltophilia RR-10 Isolate Unclassified
180 2547132374 Acidovorax radicis N35 Isolate Unclassified
181 2551306166 Nocardia tenerifensis NBRC 101015 Isolate Rhizosphere
182 2585428057 Methylibium sp. YR605 Isolate Rhizosphere
183 2588253510 Rhizobacter sp. OV335 Isolate Rhizosphere
184 2643221570 Acidovorax sp. Root568 Isolate Unclassified
185 2643221585 Pelomonas sp. Root662 Isolate Unclassified
186 2643221592 Rhizobacter sp. Root16D2 Isolate Unclassified
187 2643221596 Acidovorax sp. Root70 Isolate Unclassified
188 2643221625 Rhizobacter sp. Root29 Isolate Unclassified
189 2643221639 Pelomonas sp. Root1217 Isolate Unclassified
190 2643221646 Pelomonas sp. Root1237 Isolate Unclassified
191 2643221648 Rhizobacter sp. Root1238 Isolate Unclassified
192 2643221652 Acidovorax sp. Root402 Isolate Unclassified
193 2643221656 Pelomonas sp. Root405 Isolate Unclassified
194 2643221683 Variovorax sp. Root473 Isolate Unclassified
195 2643221717 Acidovorax sp. Root267 Isolate Unclassified
196 2738541277 Variovorax sp. GV051 Isolate Unclassified
197 2738541307 Variovorax sp. GV008 Isolate Unclassified
198 2738541337 Pelomonas sp. BT06 Isolate Unclassified
199 2738543019 Variovorax sp. GV040 Isolate Unclassified
200 2747842428 Stenotrophomonas sp. WCS2014-113 Isolate Unclassified
201 2758568621 Promicromonospora sukumoe SAI-064 Isolate Unclassified
202 2765235840 Stenotrophomonas maltophilia AA1 Isolate Unclassified
203 2816332141 Stenotrophomonas muris 1190 (v2) (version 2) Isolate Unclassified
204 2831864461 Roseateles noduli HZ7 Isolate Nodule
205 2834641062 Cupriavidus gilardii JZ4 Isolate Unclassified
206 2842391507 Stenotrophomonas maltophilia SEMIA 4027 Isolate Nodule
207 2842733646 Variovorax sp. R-72446 Isolate Unclassified
208 2852663356 Microbacterium sp. JAI119 Isolate Rhizosphere
209 2858950400 Achromobacter sp. K91 Isolate Unclassified
210 2904449895 Variovorax sp. 1763 Isolate Rhizosphere
211 2919134579 Stenotrophomonas geniculata 1733 Isolate Rhizosphere
212 2932431166 Cellulosimicrobium sp. 4261 Isolate Rhizosphere
213 2937610967 Stenotrophomonas maltophilia EP20 Isolate Unclassified
214 2941479691
215 2945909444 Variovorax sp. CRF3-Va-1 W1I1 Isolate Rhizosphere
216 2946080515 Microbacterium sp. W4I20 Isolate Rhizosphere
217 2961064222 Stenotrophomonas maltophilia EP13 Isolate Unclassified
218 2990710928 Acidovorax delafieldii SLBN-75 Isolate Rhizosphere
219 8002811521 Leucobacter chinensis NC76-1 Isolate Rhizosphere
220 8003014200 Lysobacter changpingensis Cm-3-T8 Isolate Rhizosphere
221 8004182704 Microbacterium paraoxydans ku-mp Isolate Unclassified

Type Distribution

Type Percentage (%)
Metagenomes 87.43
Metatranscriptomes 0
Isolates 12.57

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 38.3
Nodule 0.58
Rhizoplane 2.34
Rhizosphere 32.46
Stem 0
Stem Tuber 0
Unclassified 0

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0055524_1000314 3300003775 Bacteria 45893
2 JGI25155J39150_1000057 3300002704 Bacteria 72575
3 JGI25156J39149_1000073 3300002705 Bacteria 77465
4 JGI25154J39366_1000097 3300002738 Bacteria 77399
5 JGI25154J39366_1002271 3300002738 Bacteria 5209
6 JGI25157J39369_1000089 3300002741 Bacteria 77465
7 JGI25152J39213_1036122 3300002773 Bacteria 725
8 JGI25150J39212_1007122 3300002774 Bacteria 2266
9 JGI25159J45721_1000385 3300002987 Bacteria 20489
10 JGI25159J45721_1002857 3300002987 Bacteria 6337
11 JGI25159J45721_1013124 3300002987 Bacteria 1935
12 JGI25151J46595_10004075 3300003187 Bacteria 7836
13 JGI25151J46595_10011172 3300003187 Bacteria 4136
14 JGI25153J46596_10000279 3300003215 Bacteria 39072
15 rootH2_10036534 3300003320 Bacteria 11772
16 rootH1_10006128 3300003323 Bacteria 10191
17 rootH1_10023959 3300003323 Bacteria 4531
18 rootH1_10086838 3300003323 Bacteria 4146
19 JGI25160J50197_1000584 3300003354 Bacteria 20489
20 JGI25160J50197_1012928 3300003354 Bacteria 2869
21 JGI25161J50226_1000173 3300003374 Bacteria 43112
22 Ga0055526_1000280 3300003771 Bacteria 43010
23 Ga0055526_1002491 3300003771 Bacteria 12426
24 Ga0055526_1005832 3300003771 Bacteria 6921
25 Ga0055537_1000366 3300003773 Bacteria 30767
26 Ga0055524_1000264 3300003775 Bacteria 52840
27 Ga0055524_1045516 3300003775 Bacteria 1054
28 Ga0055536_1002498 3300003781 Bacteria 10321
29 Ga0055536_1006425 3300003781 Bacteria 5494
30 Ga0055534_1001297 3300003784 Bacteria 10118
31 Ga0055528_1001197 3300003790 Bacteria 16729
32 Ga0055530_10000903 3300003791 Bacteria 24424
33 Ga0055530_10026939 3300003791 Bacteria 1577
34 Ga0055530_10051784 3300003791 Bacteria 950
35 Ga0055540_1000264 3300003792 Bacteria 47407
36 Ga0055540_1000637 3300003792 Bacteria 24868
37 Ga0055540_1000916 3300003792 Bacteria 19242
38 Ga0055531_10008839 3300003794 Bacteria 5238
39 Ga0055531_10009823 3300003794 Bacteria 4847
40 Ga0055543_1001947 3300004625 Bacteria 7366
41 Ga0055543_1032851 3300004625 Bacteria 899
42 Ga0065165_1005947 3300005262 Bacteria 6602
43 Ga0065165_1009979 3300005262 Bacteria 4176
44 Ga0065165_1010121 3300005262 Bacteria 4127
45 Ga0065165_1013949 3300005262 Bacteria 3150
46 Ga0070660_100778404 3300005339 Bacteria 804
47 Ga0070659_100003021 3300005366 Bacteria 11974
48 Ga0070662_100002531 3300005457 Bacteria 11267
49 Ga0070681_10006991 3300005458 Bacteria 10984
50 Ga0070679_100256694 3300005530 Bacteria 1703
51 Ga0081539_10171464 3300005985 Bacteria 1025
52 Ga0075364_10260103 3300006051 Bacteria 1180
53 Ga0075362_10000661 3300006177 Bacteria 10159
54 Ga0075369_10017853 3300006186 Bacteria 2882
55 Ga0075369_10125025 3300006186 Bacteria 1166
56 Ga0075366_10180352 3300006195 Bacteria 1283
57 Ga0075366_10274938 3300006195 Bacteria 1029
58 Ga0075366_10313357 3300006195 Bacteria 961
59 Ga0075370_10027938 3300006353 Bacteria 3133
60 Ga0075370_10083126 3300006353 Bacteria 1842
61 Ga0075370_10314200 3300006353 Bacteria 933
62 Ga0105251_10069556 3300009011 Bacteria 1641
63 Ga0111539_11443510 3300009094 Bacteria 798
64 Ga0105243_10004820 3300009148 Bacteria 10599
65 Ga0105243_10005139 3300009148 Bacteria 10254
66 Ga0157319_1000001 3300012497 Bacteria 423237
67 Ga0157373_10043279 3300013100 Bacteria 3217
68 Ga0157380_10531813 3300014326 Bacteria 1149
69 Ga0182008_10000575 3300014497 Bacteria 27134
70 Ga0163161_10455722 3300017792 Bacteria 1035
71 Ga0209435_100008 3300025206 Bacteria 503644
72 Ga0209436_113102 3300025208 Bacteria 1372
73 Ga0207425_1000795 3300025245 Bacteria 16102
74 Ga0207425_1002016 3300025245 Bacteria 7565
75 Ga0209646_1000013 3300025246 Bacteria 565830
76 Ga0209646_1000014 3300025246 Bacteria 550484
77 Ga0209646_1000029 3300025246 Bacteria 386414
78 Ga0209026_1000016 3300025250 Bacteria 386457
79 Ga0209677_100797 3300025253 Bacteria 15815
80 Ga0209759_1000016 3300025256 Bacteria 386414
81 Ga0209129_1000027 3300025258 Bacteria 409587
82 Ga0209129_1006161 3300025258 Bacteria 3984
83 Ga0209565_1000041 3300025263 Bacteria 251081
84 Ga0209673_1000012 3300025273 Bacteria 579480
85 Ga0209673_1026548 3300025273 Bacteria 1899
86 Ga0209130_1000014 3300025284 Bacteria 412039
87 Ga0209130_1001388 3300025284 Bacteria 16276
88 Ga0209130_1002357 3300025284 Bacteria 9578
89 Ga0209130_1007340 3300025284 Bacteria 3415
90 Ga0209675_1000370 3300025291 Bacteria 38280
91 Ga0209675_1001008 3300025291 Bacteria 17685
92 Ga0209675_1004212 3300025291 Bacteria 6497
93 Ga0209675_1008255 3300025291 Bacteria 3854
94 Ga0209676_1000013 3300025292 Bacteria 816080
95 Ga0209676_1000139 3300025292 Bacteria 177886
96 Ga0209676_1000235 3300025292 Bacteria 119060
97 Ga0209676_1001669 3300025292 Bacteria 19275
98 Ga0209676_1006596 3300025292 Bacteria 5684
99 Ga0209025_1004325 3300025294 Bacteria 12415
100 Ga0209025_1030499 3300025294 Bacteria 2580
101 Ga0209025_1097561 3300025294 Bacteria 941
102 Ga0209564_1000005 3300025295 Bacteria 1147192
103 Ga0209564_1000139 3300025295 Bacteria 180328
104 Ga0209564_1001362 3300025295 Bacteria 25652
105 Ga0209564_1001460 3300025295 Bacteria 24001
106 Ga0209758_1000052 3300025297 Bacteria 338962
107 Ga0209758_1005021 3300025297 Bacteria 10542
108 Ga0209758_1049452 3300025297 Bacteria 1484
109 Ga0209758_1071163 3300025297 Bacteria 1094
110 Ga0209050_1000008 3300025298 Bacteria 1144179
111 Ga0209050_1000165 3300025298 Bacteria 152109
112 Ga0209050_1002853 3300025298 Bacteria 13702
113 Ga0209050_1003796 3300025298 Bacteria 10791
114 Ga0209050_1005937 3300025298 Bacteria 7434
115 Ga0209050_1010787 3300025298 Bacteria 4447
116 Ga0209050_1047330 3300025298 Bacteria 1121
117 Ga0209256_1000039 3300025299 Bacteria 372337
118 Ga0209256_1000213 3300025299 Bacteria 108298
119 Ga0209256_1003827 3300025299 Bacteria 10077
120 Ga0207426_1000174 3300025302 Bacteria 160877
121 Ga0207426_1003351 3300025302 Bacteria 8814
122 Ga0207426_1008441 3300025302 Bacteria 4159
123 Ga0209051_1000005 3300025303 Bacteria 1142353
124 Ga0209051_1000257 3300025303 Bacteria 88842
125 Ga0209051_1000355 3300025303 Bacteria 67873
126 Ga0209051_1008421 3300025303 Bacteria 5461
127 Ga0209051_1050062 3300025303 Bacteria 1402
128 Ga0209257_1000017 3300025304 Bacteria 866287
129 Ga0209257_1000031 3300025304 Bacteria 688770
130 Ga0209257_1000805 3300025304 Bacteria 45597
131 Ga0209257_1006217 3300025304 Bacteria 7834
132 Ga0209257_1007763 3300025304 Bacteria 6375
133 Ga0209257_1023387 3300025304 Bacteria 2174
134 Ga0209257_1038678 3300025304 Bacteria 1443
135 Ga0207707_10005566 3300025912 Bacteria 11022
136 Ga0207657_10018498 3300025919 Bacteria 6647
137 Ga0207652_10220324 3300025921 Bacteria 1710
138 Ga0207706_10001664 3300025933 Bacteria 21964
139 Ga0207709_10000292 3300025935 Bacteria 56565
140 Ga0207709_10001746 3300025935 Bacteria 14628
141 Ga0209995_1003566 3300027471 Bacteria 2479
142 Ga0209974_10007016 3300027876 Bacteria 3899
143 Ga0307515_10004066 3300028794 Bacteria 30515
144 Ga0307515_10116488 3300028794 Bacteria 3067
145 Ga0316179_1118365 3300030734 Bacteria 694
146 Ga0265328_10003583 3300031239 Bacteria 6850
147 Ga0265327_10000479 3300031251 Bacteria 70467
148 Ga0307513_10000037 3300031456 Bacteria 175364
149 Ga0307513_10454176 3300031456 Bacteria 1005
150 Ga0307408_100000513 3300031548 Bacteria 33428
151 Ga0307408_100001607 3300031548 Bacteria 16708
152 Ga0307408_100003657 3300031548 Bacteria 10478
153 Ga0307408_100075721 3300031548 Bacteria 2501
154 Ga0307516_10001952 3300031730 Bacteria 28258
155 Ga0307516_10372827 3300031730 Bacteria 1090
156 Ga0307405_10013384 3300031731 Bacteria 4373
157 Ga0307405_10201392 3300031731 Bacteria 1446
158 Ga0307405_10329578 3300031731 Bacteria 1169
159 Ga0307405_11301727 3300031731 Bacteria 632
160 Ga0307413_10576483 3300031824 Bacteria 917
161 Ga0307406_10000279 3300031901 Bacteria 30071
162 Ga0307406_10009622 3300031901 Bacteria 5432
163 Ga0307406_10238423 3300031901 Bacteria 1363
164 Ga0307412_10432728 3300031911 Bacteria 1079
165 Ga0307412_10729812 3300031911 Bacteria 853
166 Ga0307412_10820046 3300031911 Bacteria 809
167 Ga0307409_101174084 3300031995 Bacteria 790
168 Ga0307416_100045887 3300032002 Bacteria 3444
169 Ga0307414_10727280 3300032004 Bacteria 900
170 Ga0307411_10018121 3300032005 Bacteria 4031
171 Ga0307411_10022047 3300032005 Bacteria 3742
172 Ga0307411_10391856 3300032005 Bacteria 1146
173 Ga0307415_100604179 3300032126 Bacteria 977
174 Ga0395900_0354188 3300037418 Bacteria 1441
175 Ga0395905_0001795 3300037471 Bacteria 24890
176 Ga0237819_10718 3300038705 Bacteria 1186
177 Ga0237816_00003 3300039145 Bacteria 18184
178 Ga0439436_0016141 3300041404 Bacteria 2244
179 Ga0439465_0021501 3300041413 Bacteria 2023
180 Ga0451793_0640250 3300041452 Bacteria 779
181 Ga0451793_1850884 3300041452 Bacteria 1198
182 Ga0451800_0799271 3300041459 Bacteria 1581
183 Ga0451804_1132592 3300041463 Bacteria 3355
184 Ga0451843_0644681 3300041509 Bacteria 680
185 Ga0451853_2848468 3300041512 Bacteria 2354
186 Ga0451853_3573487 3300041512 Bacteria 828
187 Ga0439431_0022990 3300041997 Bacteria 1506
188 Ga0439433_0027169 3300041999 Bacteria 1297
189 Ga0439437_002526 3300042000 Bacteria 1962
190 Ga0439445_0142172 3300042004 Bacteria 696
191 Ga0439432_005563 3300042006 Bacteria 4531
192 Ga0439449_0011387 3300042007 Bacteria 3347
193 Ga0439449_0069546 3300042007 Bacteria 1298
194 Ga0439449_0129231 3300042007 Bacteria 939
195 Ga0439457_033675 3300042014 Bacteria 1138
196 Ga0450917_000010 3300042120 Bacteria 8334
197 Ga0450890_002224 3300042127 Bacteria 2696
198 Ga0450891_000505 3300042129 Bacteria 4095
199 Ga0450892_000853 3300042130 Bacteria 3338
200 Ga0439434_0039908 3300042435 Bacteria 1441
201 Ga0439434_0041881 3300042435 Bacteria 1407
202 Ga0439444_0081870 3300042437 Bacteria 708
203 Ga0450916_000658 3300042530 Bacteria 3126
204 Ga0450901_002271 3300042533 Bacteria 2103
205 Ga0453684_0869236 3300044712 Bacteria 968
206 Ga0451576_0115584 3300045051 Bacteria 2793
207 Ga0495627_049626 3300046453 Bacteria 1266
208 Ga0495638_0061475 3300046460 Bacteria 2321
209 Ga0495583_0233783 3300046506 Bacteria 740
210 Ga0495606_0370597 3300046507 Bacteria 754
211 Ga0495620_0119533 3300046515 Bacteria 1039
212 Ga0495632_0009735 3300046519 Bacteria 5761
213 Ga0495643_0082623 3300046522 Bacteria 1669
214 Ga0495663_0000590 3300046525 Bacteria 12723
215 Ga0495633_0003438 3300046558 Bacteria 10537
216 Ga0495649_0076540 3300046694 Bacteria 1791
217 Ga0495686_0585071 3300047472 Bacteria 579
218 Ga0496108_0217630 3300048911 Bacteria 1659
219 Ga0496109_0142879 3300048912 Bacteria 2238
220 Ga0496110_0212877 3300048913 Bacteria 1757
221 Ga0496114_0555893 3300048917 Bacteria 1014
222 Ga0496116_0022109 3300048919 Bacteria 4779
223 Ga0496116_0080688 3300048919 Bacteria 2019
224 Ga0496117_0007860 3300048920 Bacteria 10261
225 Ga0496117_0278705 3300048920 Bacteria 896
226 Ga0496118_0024492 3300048921 Bacteria 5205
227 Ga0496118_0205937 3300048921 Bacteria 1159
228 Ga0496119_0005394 3300048922 Bacteria 12281
229 Ga0496119_0034309 3300048922 Bacteria 3345
230 Ga0496119_0058776 3300048922 Bacteria 2314
231 Ga0496119_0104663 3300048922 Bacteria 1582
232 Ga0496120_0011832 3300048923 Bacteria 5970
233 Ga0496120_0272038 3300048923 Bacteria 786
234 Ga0496121_0000703 3300048924 Bacteria 62228
235 Ga0496121_0001405 3300048924 Bacteria 40772
236 Ga0496121_0006799 3300048924 Bacteria 14014
237 Ga0496122_0002160 3300048925 Bacteria 28824
238 Ga0496122_0027524 3300048925 Bacteria 4857
239 Ga0496122_0037081 3300048925 Bacteria 3931
240 Ga0496122_0092103 3300048925 Bacteria 2061
241 Ga0496122_0150819 3300048925 Bacteria 1435
242 Ga0496123_0000304 3300048926 Bacteria 95535
243 Ga0496123_0031077 3300048926 Bacteria 3893
244 Ga0496123_0051448 3300048926 Bacteria 2743
245 Ga0496123_0071815 3300048926 Bacteria 2157
246 Ga0496123_0071967 3300048926 Bacteria 2153
247 Ga0496123_0187445 3300048926 Bacteria 1073
248 Ga0496124_0002983 3300048927 Bacteria 21176
249 Ga0496124_0156106 3300048927 Bacteria 1784
250 Ga0496125_0000146 3300048928 Bacteria 154919
251 Ga0496125_0166776 3300048928 Bacteria 1487
252 Ga0496125_0361608 3300048928 Bacteria 862
253 Ga0496126_0038956 3300048929 Bacteria 4417
254 Ga0496126_0140931 3300048929 Bacteria 2075
255 Ga0496126_0154988 3300048929 Bacteria 1961
256 Ga0496126_0763463 3300048929 Bacteria 745
257 Ga0501300_038136 3300049523 Bacteria 720
258 Ga0501043_0197049 3300049579 Bacteria 1564
259 Ga0501077_0431897 3300049593 Bacteria 843
260 Ga0501217_021970 3300049661 Bacteria 1510
261 Ga0501227_055302 3300049665 Bacteria 1008
262 Ga0501233_124043 3300049668 Bacteria 700
263 Ga0501235_001372 3300049669 Bacteria 5159
264 Ga0501236_015663 3300049670 Bacteria 1065
265 Ga0501258_001684 3300049687 Bacteria 1846
266 Ga0501221_010753 3300049704 Bacteria 1632
267 Ga0501229_000562 3300049706 Bacteria 4180
268 Ga0501232_014464 3300049757 Bacteria 947
269 Ga0501263_004893 3300049760 Bacteria 1495
270 Ga0501264_034132 3300049761 Bacteria 598
271 Ga0501035_1150896 3300049822 Bacteria 604
272 nmdc:mga03683_264_c2 3300050489 Bacteria 3470
273 nmdc:mga03683_65495_c2 3300050489 Bacteria 1204
274 nmdc:mga00v17_226327_c1 3300050491 Bacteria 1211
275 nmdc:mga0yw44_180051_c1 3300050492 Bacteria 1391
276 nmdc:mga0k408_304377_c1 3300050493 Bacteria 951
277 nmdc:mga0k408_79020_c2 3300050493 Bacteria 1000
278 nmdc:mga07m45_223689_c1 3300050496 Bacteria 1095
279 nmdc:mga07m45_42341_c1 3300050496 Bacteria 2552
280 nmdc:mga08y16_1115917_c1 3300050511 Bacteria 763
281 nmdc:mga0sz30_18873_c1 3300050516 Bacteria 2764
282 Ga0500635_0048161 3300053080 Bacteria 1451
283 Ga0500646_0020685 3300053090 Bacteria 1749
284 Ga0500566_0194014 3300053094 Bacteria 1031
285 Ga0500650_0077605 3300053098 Bacteria 1552
286 Ga0500555_025522 3300053103 Bacteria 1692
287 Ga0500555_104457 3300053103 Bacteria 717
288 Ga0500593_000332 3300053117 Bacteria 19012
289 Ga0500607_006332 3300053121 Bacteria 7508
290 Ga0500628_000592 3300053129 Bacteria 6630
291 Ga0500628_001324 3300053129 Bacteria 4264
292 Ga0500652_000097 3300053131 Bacteria 35527
293 Ga0500559_0000570 3300053136 Bacteria 25507
294 Ga0500573_0012684 3300053140 Bacteria 4737
295 Ga0500604_0017215 3300053151 Bacteria 1997
296 Ga0500622_0000359 3300053156 Bacteria 44261
297 Ga0500622_0002137 3300053156 Bacteria 14691
298 Ga0500570_138962 3300053724 Bacteria 899
299 Ga0500661_010066 3300055283 Bacteria 1723
300 2547500987 2547132130 Bacteria 4660562
301 2548500220 2547132374 Bacteria 5530232
302 2552112156 2551306166 Bacteria 9731570
303 2587728208 2585428057 Bacteria 6737412
304 2588291117 2588253510 Bacteria 6901809
305 2643864761 2643221570 Bacteria 5103772
306 2643935227 2643221585 Bacteria 5812563
307 2643971947 2643221592 Bacteria 6608788
308 2643991136 2643221596 Bacteria 5006805
309 2644142145 2643221625 Bacteria 6512927
310 2644221916 2643221639 Bacteria 6649903
311 2644257288 2643221646 Bacteria 6433402
312 2644275840 2643221648 Bacteria 6521465
313 2644294008 2643221652 Bacteria 5140275
314 2644314875 2643221656 Bacteria 5809961
315 2644468416 2643221683 Bacteria 5749203
316 2644644463 2643221717 Bacteria 5676132
317 2738720973 2738541277 Bacteria 7458140
318 2738886229 2738541307 Bacteria 8606193
319 2739055131 2738541337 Bacteria 6183410
320 2739280172 2738543019 Bacteria 7459457
321 2747950942 2747842428 Bacteria 4689383
322 2760624362 2758568621 Bacteria 5967089
323 2765579214 2765235840 Bacteria 4663337
324 2816517308 2816332141 Bacteria 4436036
325 2831866723 2831864461 Bacteria 6502356
326 2834645122 2834641062 Bacteria 5559922
327 2842392106 2842391507 Bacteria 4486072
328 2842736538 2842733646 Bacteria 5716726
329 2852663926 2852663356 Bacteria 4090475
330 2858955137 2858950400 Bacteria 6783797
331 2904453719 2904449895 Bacteria 6927402
332 2919135826 2919134579 Bacteria 4480386
333 2932434267 2932431166 Bacteria 4215299
334 2937612737 2937610967 Bacteria 4618818
335 2941485511
336 2945910828 2945909444 Bacteria 7065066
337 2946083182 2946080515 Bacteria 4310960
338 2961067546 2961064222 Bacteria 4749990
339 2990711781 2990710928 Bacteria 5002431
340 8002813303 8002811521 Bacteria 2942897
341 8003014209 8003014200 Bacteria 4059994
342 8004184397 8004182704 Bacteria 3391155
343 Ga0055524_1000314
344 JGI25155J39150_1000057
345 JGI25156J39149_1000073
346 JGI25154J39366_1000097
347 JGI25154J39366_1002271
348 JGI25157J39369_1000089
349 JGI25152J39213_1036122
350 JGI25150J39212_1007122
351 JGI25159J45721_1000385
352 JGI25159J45721_1002857
353 JGI25159J45721_1013124
354 JGI25151J46595_10004075
355 JGI25151J46595_10011172
356 JGI25153J46596_10000279
357 rootH2_10036534
358 rootH1_10006128
359 rootH1_10023959
360 rootH1_10086838
361 JGI25160J50197_1000584
362 JGI25160J50197_1012928
363 JGI25161J50226_1000173
364 Ga0055526_1000280
365 Ga0055526_1002491
366 Ga0055526_1005832
367 Ga0055537_1000366
368 Ga0055524_1000264
369 Ga0055524_1045516
370 Ga0055536_1002498
371 Ga0055536_1006425
372 Ga0055534_1001297
373 Ga0055528_1001197
374 Ga0055530_10000903
375 Ga0055530_10026939
376 Ga0055530_10051784
377 Ga0055540_1000264
378 Ga0055540_1000637
379 Ga0055540_1000916
380 Ga0055531_10008839
381 Ga0055531_10009823
382 Ga0055543_1001947
383 Ga0055543_1032851
384 Ga0065165_1005947
385 Ga0065165_1009979
386 Ga0065165_1010121
387 Ga0065165_1013949
388 Ga0070660_100778404
389 Ga0070659_100003021
390 Ga0070662_100002531
391 Ga0070681_10006991
392 Ga0070679_100256694
393 Ga0081539_10171464
394 Ga0075364_10260103
395 Ga0075362_10000661
396 Ga0075369_10017853
397 Ga0075369_10125025
398 Ga0075366_10180352
399 Ga0075366_10274938
400 Ga0075366_10313357
401 Ga0075370_10027938
402 Ga0075370_10083126
403 Ga0075370_10314200
404 Ga0105251_10069556
405 Ga0111539_11443510
406 Ga0105243_10004820
407 Ga0105243_10005139
408 Ga0157319_1000001
409 Ga0157373_10043279
410 Ga0157380_10531813
411 Ga0182008_10000575
412 Ga0163161_10455722
413 Ga0209435_100008
414 Ga0209436_113102
415 Ga0207425_1000795
416 Ga0207425_1002016
417 Ga0209646_1000013
418 Ga0209646_1000014
419 Ga0209646_1000029
420 Ga0209026_1000016
421 Ga0209677_100797
422 Ga0209759_1000016
423 Ga0209129_1000027
424 Ga0209129_1006161
425 Ga0209565_1000041
426 Ga0209673_1000012
427 Ga0209673_1026548
428 Ga0209130_1000014
429 Ga0209130_1001388
430 Ga0209130_1002357
431 Ga0209130_1007340
432 Ga0209675_1000370
433 Ga0209675_1001008
434 Ga0209675_1004212
435 Ga0209675_1008255
436 Ga0209676_1000013
437 Ga0209676_1000139
438 Ga0209676_1000235
439 Ga0209676_1001669
440 Ga0209676_1006596
441 Ga0209025_1004325
442 Ga0209025_1030499
443 Ga0209025_1097561
444 Ga0209564_1000005
445 Ga0209564_1000139
446 Ga0209564_1001362
447 Ga0209564_1001460
448 Ga0209758_1000052
449 Ga0209758_1005021
450 Ga0209758_1049452
451 Ga0209758_1071163
452 Ga0209050_1000008
453 Ga0209050_1000165
454 Ga0209050_1002853
455 Ga0209050_1003796
456 Ga0209050_1005937
457 Ga0209050_1010787
458 Ga0209050_1047330
459 Ga0209256_1000039
460 Ga0209256_1000213
461 Ga0209256_1003827
462 Ga0207426_1000174
463 Ga0207426_1003351
464 Ga0207426_1008441
465 Ga0209051_1000005
466 Ga0209051_1000257
467 Ga0209051_1000355
468 Ga0209051_1008421
469 Ga0209051_1050062
470 Ga0209257_1000017
471 Ga0209257_1000031
472 Ga0209257_1000805
473 Ga0209257_1006217
474 Ga0209257_1007763
475 Ga0209257_1023387
476 Ga0209257_1038678
477 Ga0207707_10005566
478 Ga0207657_10018498
479 Ga0207652_10220324
480 Ga0207706_10001664
481 Ga0207709_10000292
482 Ga0207709_10001746
483 Ga0209995_1003566
484 Ga0209974_10007016
485 Ga0307515_10004066
486 Ga0307515_10116488
487 Ga0316179_1118365
488 Ga0265328_10003583
489 Ga0265327_10000479
490 Ga0307513_10000037
491 Ga0307513_10454176
492 Ga0307408_100000513
493 Ga0307408_100001607
494 Ga0307408_100003657
495 Ga0307408_100075721
496 Ga0307516_10001952
497 Ga0307516_10372827
498 Ga0307405_10013384
499 Ga0307405_10201392
500 Ga0307405_10329578
501 Ga0307405_11301727
502 Ga0307413_10576483
503 Ga0307406_10000279
504 Ga0307406_10009622
505 Ga0307406_10238423
506 Ga0307412_10432728
507 Ga0307412_10729812
508 Ga0307412_10820046
509 Ga0307409_101174084
510 Ga0307416_100045887
511 Ga0307414_10727280
512 Ga0307411_10018121
513 Ga0307411_10022047
514 Ga0307411_10391856
515 Ga0307415_100604179
516 Ga0395900_0354188
517 Ga0395905_0001795
518 Ga0237819_10718
519 Ga0237816_00003
520 Ga0439436_0016141
521 Ga0439465_0021501
522 Ga0451793_0640250
523 Ga0451793_1850884
524 Ga0451800_0799271
525 Ga0451804_1132592
526 Ga0451843_0644681
527 Ga0451853_2848468
528 Ga0451853_3573487
529 Ga0439431_0022990
530 Ga0439433_0027169
531 Ga0439437_002526
532 Ga0439445_0142172
533 Ga0439432_005563
534 Ga0439449_0011387
535 Ga0439449_0069546
536 Ga0439449_0129231
537 Ga0439457_033675
538 Ga0450917_000010
539 Ga0450890_002224
540 Ga0450891_000505
541 Ga0450892_000853
542 Ga0439434_0039908
543 Ga0439434_0041881
544 Ga0439444_0081870
545 Ga0450916_000658
546 Ga0450901_002271
547 Ga0453684_0869236
548 Ga0451576_0115584
549 Ga0495627_049626
550 Ga0495638_0061475
551 Ga0495583_0233783
552 Ga0495606_0370597
553 Ga0495620_0119533
554 Ga0495632_0009735
555 Ga0495643_0082623
556 Ga0495663_0000590
557 Ga0495633_0003438
558 Ga0495649_0076540
559 Ga0495686_0585071
560 Ga0496108_0217630
561 Ga0496109_0142879
562 Ga0496110_0212877
563 Ga0496114_0555893
564 Ga0496116_0022109
565 Ga0496116_0080688
566 Ga0496117_0007860
567 Ga0496117_0278705
568 Ga0496118_0024492
569 Ga0496118_0205937
570 Ga0496119_0005394
571 Ga0496119_0034309
572 Ga0496119_0058776
573 Ga0496119_0104663
574 Ga0496120_0011832
575 Ga0496120_0272038
576 Ga0496121_0000703
577 Ga0496121_0001405
578 Ga0496121_0006799
579 Ga0496122_0002160
580 Ga0496122_0027524
581 Ga0496122_0037081
582 Ga0496122_0092103
583 Ga0496122_0150819
584 Ga0496123_0000304
585 Ga0496123_0031077
586 Ga0496123_0051448
587 Ga0496123_0071815
588 Ga0496123_0071967
589 Ga0496123_0187445
590 Ga0496124_0002983
591 Ga0496124_0156106
592 Ga0496125_0000146
593 Ga0496125_0166776
594 Ga0496125_0361608
595 Ga0496126_0038956
596 Ga0496126_0140931
597 Ga0496126_0154988
598 Ga0496126_0763463
599 Ga0501300_038136
600 Ga0501043_0197049
601 Ga0501077_0431897
602 Ga0501217_021970
603 Ga0501227_055302
604 Ga0501233_124043
605 Ga0501235_001372
606 Ga0501236_015663
607 Ga0501258_001684
608 Ga0501221_010753
609 Ga0501229_000562
610 Ga0501232_014464
611 Ga0501263_004893
612 Ga0501264_034132
613 Ga0501035_1150896
614 nmdc:mga03683_264_c2
615 nmdc:mga03683_65495_c2
616 nmdc:mga00v17_226327_c1
617 nmdc:mga0yw44_180051_c1
618 nmdc:mga0k408_304377_c1
619 nmdc:mga0k408_79020_c2
620 nmdc:mga07m45_223689_c1
621 nmdc:mga07m45_42341_c1
622 nmdc:mga08y16_1115917_c1
623 nmdc:mga0sz30_18873_c1
624 Ga0500635_0048161
625 Ga0500646_0020685
626 Ga0500566_0194014
627 Ga0500650_0077605
628 Ga0500555_025522
629 Ga0500555_104457
630 Ga0500593_000332
631 Ga0500607_006332
632 Ga0500628_000592
633 Ga0500628_001324
634 Ga0500652_000097
635 Ga0500559_0000570
636 Ga0500573_0012684
637 Ga0500604_0017215
638 Ga0500622_0000359
639 Ga0500622_0002137
640 Ga0500570_138962
641 Ga0500661_010066
642 2547500987
643 2548500220
644 2552112156
645 2587728208
646 2588291117
647 2643864761
648 2643935227
649 2643971947
650 2643991136
651 2644142145
652 2644221916
653 2644257288
654 2644275840
655 2644294008
656 2644314875
657 2644468416
658 2644644463
659 2738720973
660 2738886229
661 2739055131
662 2739280172
663 2747950942
664 2760624362
665 2765579214
666 2816517308
667 2831866723
668 2834645122
669 2842392106
670 2842736538
671 2852663926
672 2858955137
673 2904453719
674 2919135826
675 2932434267
676 2937612737
677 2941485511
678 2945910828
679 2946083182
680 2961067546
681 2990711781
682 8002813303
683 8003014209
684 8004184397

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF02627

CMD

Carboxymuconolactone decarboxylase family

51

110

0.87

Structural Annotation

Top 5 Hits

ID Description Score Start End
6e8l-assembly3.cif.gz_F crystal structure of alkyl hydroperoxidase d (ahpd) from streptococcus pneumoniae (strain d39/ nctc 7466) 0.9303 1 171
3lvy-assembly3.cif.gz_E crystal structure of carboxymuconolactone decarboxylase family protein smu.961 from streptococcus mutans 0.9183 6 171
3lvy-assembly3.cif.gz_F crystal structure of carboxymuconolactone decarboxylase family protein smu.961 from streptococcus mutans 0.9142 2 171
7xw1-assembly1.cif.gz_A the crystal structure of ahpd from pseudomonas aeruginosa 0.9121 40 165
3lvy-assembly2.cif.gz_D crystal structure of carboxymuconolactone decarboxylase family protein smu.961 from streptococcus mutans 0.9109 2 171
ID Description Score Start End Superfamily
af_Q2FVE0_2_139_1.20.1290.10 Mainly Alpha;Up-down Bundle;AhpD-like;AhpD-like 0.9168 39 165 1.20.1290.10
af_O53749_49_187_1.20.1290.10 Mainly Alpha;Up-down Bundle;AhpD-like;AhpD-like 0.9125 46 171 1.20.1290.10
3lvyC01 Mainly Alpha;Up-down Bundle;AhpD-like;AhpD-like 0.9075 17 171 1.20.1290.10
af_O53905_23_180_1.20.1290.10 Mainly Alpha;Up-down Bundle;AhpD-like;AhpD-like 0.902 33 175 1.20.1290.10
2o4dA00 Mainly Alpha;Up-down Bundle;AhpD-like;AhpD-like 0.8877 39 165 1.20.1290.10
ID Description Score Start End GO Terms
AF-A0A254NFF6-F1-model_v4 Carboxymuconolactone decarboxylase 0.9935 2 179 GO:0051920
AF-T0RGC7-F1-model_v4 Carboxymuconolactone decarboxylase family protein 0.9931 1 178 GO:0051920
AF-L2EA21-F1-model_v4 deleted 0.9931 18 179
AF-H4EZN4-F1-model_v4 Alkylhydroperoxidase like protein, AhpD family 0.992 12 181 GO:0051920
AF-A0A1H0TD21-F1-model_v4 Uncharacterized peroxidase-related enzyme 0.9904 1 179 GO:0051920

Map