F415004

General Info

Members Datasets Scaffolds Average Seq Length
342 216 684 184

Family's Representative Sequence

Representative Sequence 3300003775|Ga0055524_1000317|Ga0055524_100031736
Length 203
Sequence VRLTLSLVGMPGGGKSTVGRLLARQLDMPFVDSDAEIEKDLGGESIKDYFARQGEASFRDLESRVIARLLEGAGADREMILATGGGAVLREINRERLKAHSTVVYLRSSPEELFRRLKHDTQRPLLQVANPLAKLRDLYGQRDPLYRRCAHFVLESSRPSVHGLANMILMQLELAGLIDPARVAATVGASEAPYTSGNDRSAS

Samples

Sample ID Description Type Environment
1 3300003775 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mCL_r2 Metagenome Endosphere
2 3300002704 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mLB Metagenome Unclassified
3 3300002705 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mMS Metagenome Unclassified
4 3300002738 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mTSA Metagenome Unclassified
5 3300002741 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mCL Metagenome Unclassified
6 3300002774 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mTSA Metagenome Endosphere
7 3300002987 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mLB Metagenome Endosphere
8 3300003187 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mLB Metagenome Endosphere
9 3300003215 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF Metagenome Endosphere
10 3300003316 Sugarcane root Sample L1 Metagenome Unclassified
11 3300003320 Sugarcane root Sample H2 Metagenome Unclassified
12 3300003322 Sugarcane root Sample L2 Metagenome Unclassified
13 3300003323 Sugarcane root Sample H1 Metagenome Unclassified
14 3300003752 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mCL_r2 Metagenome Endosphere
15 3300003756 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mMS_r2 Metagenome Endosphere
16 3300003759 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mMF_r2 Metagenome Endosphere
17 3300003761 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mTSA_r2 Metagenome Endosphere
18 3300003763 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mCL_r2 Metagenome Endosphere
19 3300003771 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMF_r2 Metagenome Endosphere
20 3300003773 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mTSA_r2 Metagenome Endosphere
21 3300003781 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mLB_r2 Metagenome Endosphere
22 3300003784 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mLB_r2 Metagenome Endosphere
23 3300003790 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMS_r2 Metagenome Endosphere
24 3300003791 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 Metagenome Endosphere
25 3300003792 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mMS_r2 Metagenome Endosphere
26 3300003794 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 Metagenome Endosphere
27 3300005262 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMF (version 2) (version 3) Metagenome Endosphere
28 3300005327 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG Metagenome Rhizosphere
29 3300005328 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG Metagenome Rhizosphere
30 3300005334 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 Metagenome Rhizosphere
31 3300005338 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 Metagenome Rhizosphere
32 3300005339 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG Metagenome Rhizosphere
33 3300005354 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG Metagenome Rhizosphere
34 3300005355 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG Metagenome Rhizosphere
35 3300005364 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG Metagenome Rhizosphere
36 3300005366 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG Metagenome Rhizosphere
37 3300005367 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG Metagenome Rhizosphere
38 3300005455 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG Metagenome Rhizosphere
39 3300005456 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG Metagenome Rhizosphere
40 3300005459 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 Metagenome Rhizosphere
41 3300005467 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG Metagenome Rhizosphere
42 3300005543 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG Metagenome Rhizosphere
43 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
44 3300005577 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 Metagenome Rhizosphere
45 3300005578 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 Metagenome Rhizosphere
46 3300005617 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 Metagenome Rhizosphere
47 3300005618 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 Metagenome Rhizosphere
48 3300005719 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 Metagenome Rhizosphere
49 3300005842 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 Metagenome Rhizosphere
50 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
51 3300006038 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 Metagenome Endosphere
52 3300006042 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-3 Metagenome Endosphere
53 3300006051 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 Metagenome Endosphere
54 3300006177 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-2 Metagenome Endosphere
55 3300006178 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 Metagenome Endosphere
56 3300006186 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-4 Metagenome Endosphere
57 3300006195 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 Metagenome Endosphere
58 3300006353 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 Metagenome Endosphere
59 3300006881 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 Metagenome Rhizosphere
60 3300006931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 (version 2) (version 2) Metagenome Rhizosphere
61 3300006944 Root nodule microbial communities of legume samples collected from California, USA - Cow pea red BW Metagenome Nodule
62 3300009098 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG Metagenome Rhizosphere
63 3300009174 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG Metagenome Rhizosphere
64 3300009176 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG Metagenome Rhizosphere
65 3300009177 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG Metagenome Rhizosphere
66 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
67 3300011119 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG Metagenome Rhizosphere
68 3300012497 Arabidopsis rhizosphere microbial communities from North Carolina - M.Cvi.2.old.240510 Metagenome Rhizosphere
69 3300013296 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG Metagenome Rhizosphere
70 3300013297 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG Metagenome Rhizosphere
71 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
72 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
73 3300014325 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG Metagenome Rhizosphere
74 3300014968 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG Metagenome Rhizosphere
75 3300021361 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2 Metagenome Rhizosphere
76 3300025206 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mLB (SPAdes) (version 2) Metagenome Unclassified
77 3300025226 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mMS_r2 (SPAdes) (version 2) Metagenome Endosphere
78 3300025230 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mMF_r2 (SPAdes) (version 2) Metagenome Endosphere
79 3300025242 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mTSA_r2 (SPAdes) (version 2) Metagenome Endosphere
80 3300025245 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mTSA (SPAdes) (version 3) Metagenome Endosphere
81 3300025246 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mTSA (SPAdes) (version 2) Metagenome Unclassified
82 3300025250 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mCL (SPAdes) (version 2) Metagenome Unclassified
83 3300025253 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
84 3300025254 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mMF_r2 (SPAdes) (version 2) Metagenome Endosphere
85 3300025256 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mMS (SPAdes) (version 2) Metagenome Unclassified
86 3300025263 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mTSA_r2 (SPAdes) (version 3) Metagenome Endosphere
87 3300025272 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
88 3300025273 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMS_r2 (SPAdes) (version 3) Metagenome Endosphere
89 3300025284 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mLB (SPAdes) (version 2) Metagenome Endosphere
90 3300025291 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mLB_r2 (SPAdes) (version 3) Metagenome Endosphere
91 3300025292 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mLB_r2 (SPAdes) (version 2) Metagenome Endosphere
92 3300025294 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mLB (SPAdes) (version 2) Metagenome Endosphere
93 3300025295 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMF_r2 (SPAdes) (version 3) Metagenome Endosphere
94 3300025297 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF (SPAdes) (version 2) Metagenome Endosphere
95 3300025298 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 (SPAdes) (version 2) Metagenome Endosphere
96 3300025299 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mCL_r2 (SPAdes) (version 3) Metagenome Endosphere
97 3300025302 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMS (SPAdes) (version 2) Metagenome Endosphere
98 3300025303 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mMS_r2 (SPAdes) (version 2) Metagenome Endosphere
99 3300025304 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
100 3300025907 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
101 3300025909 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
102 3300025914 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
103 3300025919 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
104 3300025926 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
105 3300025931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
106 3300025933 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
107 3300025934 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
108 3300025940 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
109 3300025941 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
110 3300025942 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes) (version 2) Metagenome Rhizosphere
111 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
112 3300025960 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
113 3300025981 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 (SPAdes) (version 2) Metagenome Rhizosphere
114 3300025986 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
115 3300026023 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 (SPAdes) (version 2) Metagenome Rhizosphere
116 3300026035 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes) (version 2) Metagenome Rhizosphere
117 3300026067 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
118 3300026088 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes) (version 2) Metagenome Rhizosphere
119 3300026089 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes) (version 2) Metagenome Rhizosphere
120 3300026095 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes) (version 2) Metagenome Rhizosphere
121 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
122 3300026118 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes) (version 2) Metagenome Rhizosphere
123 3300027296 Root nodule microbial communities of legume samples collected from California, USA - Cow pea red BW (SPAdes) (version 2) Metagenome Nodule
124 3300027312 Agave microbial communities from Guanajuato, Mexico - At.Am.rz (SPAdes) (version 2) Metagenome Rhizosphere
125 3300027876 Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M3 S PM (SPAdes) (version 2) Metagenome Rhizosphere
126 3300028381 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) Metagenome Rhizosphere
127 3300028666 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-19 metaG Metagenome Rhizosphere
128 3300028786 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 23_EM Metagenome Unclassified
129 3300028794 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM Metagenome Unclassified
130 3300029957 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-14-19 metaG Metagenome Rhizosphere
131 3300030500 Agave microbial communities from Guanajuato, Mexico - At.Am.rz (v2) (version 3) Metagenome Rhizosphere
132 3300031456 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 15_EM Metagenome Unclassified
133 3300031507 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 10_EM Metagenome Unclassified
134 3300031548 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3 Metagenome Rhizosphere
135 3300031616 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 9_EM Metagenome Unclassified
136 3300031730 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 19_EM Metagenome Unclassified
137 3300031901 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2 Metagenome Rhizosphere
138 3300031911 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1 Metagenome Rhizosphere
139 3300033179 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 7_EM Metagenome Unclassified
140 3300033180 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 12_EM Metagenome Unclassified
141 3300035691 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_NoN_4 Metagenome Rhizosphere
142 3300036401 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_16 Metagenome Rhizosphere
143 3300037068 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_16 Metagenome Rhizosphere
144 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
145 3300039447 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2 v2 Metagenome Rhizosphere
146 3300041459 Perennial ryegrass root microbial community from Lincoln, Canterbury, New Zealand - RGR18_11 MetaG Metagenome Rhizoplane
147 3300041486 Perennial ryegrass root microbial community from Lincoln, Canterbury, New Zealand - RGR18_9 MetaG Metagenome Rhizoplane
148 3300042438 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0311FE14Z081617_5533 Metagenome Rhizosphere
149 3300042439 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0612FE14Z071817_5363 Metagenome Rhizosphere
150 3300044673 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Bulk_9BB_GED Metagenome Rhizosphere
151 3300044683 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA3R Metagenome Rhizosphere
152 3300044684 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC4R Metagenome Rhizosphere
153 3300044693 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC2R Metagenome Rhizosphere
154 3300044694 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC3R Metagenome Rhizosphere
155 3300044706 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA3R Metagenome Rhizosphere
156 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
157 3300044719 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC1R Metagenome Rhizosphere
158 3300044735 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA1R Metagenome Rhizosphere
159 3300044765 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA2R Metagenome Rhizosphere
160 3300044842 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA2R Metagenome Rhizosphere
161 3300044901 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA4R Metagenome Rhizosphere
162 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
163 3300045836 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC4R Metagenome Rhizosphere
164 3300046454 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-198-CL2_38_5 rhizosphere Metagenome Rhizosphere
165 3300046462 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-86-CL2_69_17 rhizosphere Metagenome Rhizosphere
166 3300046475 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-845-CL1_31_22 rhizosphere Metagenome Rhizosphere
167 3300046492 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co3_21_57 rhizosphere Metagenome Rhizosphere
168 3300046506 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co1_30_3 rhizosphere Metagenome Rhizosphere
169 3300046507 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co2_62_14 rhizosphere Metagenome Rhizosphere
170 3300046519 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co2_51_16 rhizosphere Metagenome Rhizosphere
171 3300046524 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co1_12_9 rhizosphere Metagenome Rhizosphere
172 3300046529 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-866-CL2_50_11 rhizosphere Metagenome Rhizosphere
173 3300046539 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co3_13_34 rhizosphere Metagenome Rhizosphere
174 3300046557 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL1_25_34 rhizosphere Metagenome Rhizosphere
175 3300046660 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co1_32_7 rhizosphere Metagenome Rhizosphere
176 3300046691 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co3_14_51 rhizosphere Metagenome Rhizosphere
177 3300046694 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 rhizosphere Metagenome Rhizosphere
178 3300046794 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-133-Co1_27_3 rhizosphere Metagenome Rhizosphere
179 3300047472 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co2_54_22 rhizosphere Metagenome Rhizosphere
180 3300048903 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7v unlabeled Metagenome Rhizoplane
181 3300048911 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8v unlabeled Metagenome Rhizoplane
182 3300048912 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8w unlabeled Metagenome Rhizoplane
183 3300048915 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5c N15 Metagenome Rhizoplane
184 3300048916 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5d N15 Metagenome Rhizoplane
185 3300048921 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1f N15 Metagenome Unclassified
186 3300048927 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_4e N15 Metagenome Unclassified
187 3300049649 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - J5_A_0_drought Metagenome Rhizosphere
188 3300049662 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - F2_A_2_control Metagenome Rhizosphere
189 3300049686 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - I11_B_3_control Metagenome Rhizosphere
190 3300050491 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 re-annotation Metagenome Endosphere
191 3300050492 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 re-annotation Metagenome Endosphere
192 3300050493 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 re-annotation Metagenome Endosphere
193 3300050494 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 re-annotation Metagenome Endosphere
194 3300050496 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 re-annotation Metagenome Endosphere
195 3300050516 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-4 re-annotation Metagenome Endosphere
196 3300053080 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-905-CL1_32_20 endosphere Metagenome Endosphere
197 3300053086 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co2_62_14 endosphere Metagenome Endosphere
198 3300053092 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co3_15_40 endosphere Metagenome Endosphere
199 3300053093 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co2_62_24 endosphere Metagenome Endosphere
200 3300053111 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-258-CL2_67_23 endosphere Metagenome Endosphere
201 3300053117 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co2_62_25 endosphere Metagenome Endosphere
202 3300053122 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL3_77_6 endosphere Metagenome Endosphere
203 3300053139 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co1_23_3 endosphere Metagenome Endosphere
204 3300053145 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL3_84_27 endosphere Metagenome Endosphere
205 3300053147 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-351-Co3_11_46 endosphere Metagenome Endosphere
206 3300053154 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL2_38_7 endosphere Metagenome Endosphere
207 3300053156 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 endosphere Metagenome Endosphere
208 3300053730 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co2_68_28 endosphere Metagenome Endosphere
209 3300055283 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-4579-CL1_25_23_RD_R2 endosphere Metagenome Endosphere
210 3300061719 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC2R1 Metagenome Rhizosphere
211 2643221592 Rhizobacter sp. Root16D2 Isolate Unclassified
212 2643221625 Rhizobacter sp. Root29 Isolate Unclassified
213 2643221648 Rhizobacter sp. Root1238 Isolate Unclassified
214 2831864461 Roseateles noduli HZ7 Isolate Nodule
215 2886848708 Mitsuaria sp. TWR114 Isolate Rhizosphere
216 2928115317 Pseudacidovorax sp. 1753 Isolate Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 98.25
Metatranscriptomes 0
Isolates 1.75

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 36.55
Nodule 0.88
Rhizoplane 2.05
Rhizosphere 47.37
Stem 0
Stem Tuber 0
Unclassified 1.75

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0055524_1000317 3300003775 Bacteria 45570
2 JGI25155J39150_1000024 3300002704 Bacteria 133561
3 JGI25156J39149_1000005 3300002705 Bacteria 263980
4 JGI25156J39149_1011615 3300002705 Bacteria 1981
5 JGI25154J39366_1000017 3300002738 Bacteria 252448
6 JGI25157J39369_1000003 3300002741 Bacteria 274935
7 JGI25150J39212_1005003 3300002774 Bacteria 2873
8 JGI25159J45721_1001965 3300002987 Bacteria 8190
9 JGI25151J46595_10003242 3300003187 Bacteria 9057
10 JGI25151J46595_10004391 3300003187 Bacteria 7471
11 JGI25153J46596_10001636 3300003215 Bacteria 13291
12 rootH1_10097901 3300003316 Bacteria 3840
13 rootH2_10028249 3300003320 Bacteria 4673
14 rootH2_10081784 3300003320 Bacteria 2128
15 rootL2_10003381 3300003322 Bacteria 63123
16 rootL2_10107491 3300003322 Bacteria 2847
17 rootL2_10147086 3300003322 Bacteria 1564
18 rootH1_10036641 3300003323 Bacteria 9957
19 rootH1_10042252 3300003323 Bacteria 3661
20 rootH1_10064552 3300003323 Bacteria 4696
21 Ga0055539_1000538 3300003752 Bacteria 11436
22 Ga0055533_1000040 3300003756 Bacteria 242927
23 Ga0055525_1000004 3300003759 Bacteria 888039
24 Ga0055525_1000457 3300003759 Bacteria 23158
25 Ga0055535_1000774 3300003761 Bacteria 23588
26 Ga0055529_1000053 3300003763 Bacteria 198996
27 Ga0055526_1001565 3300003771 Bacteria 16108
28 Ga0055526_1001575 3300003771 Bacteria 16046
29 Ga0055526_1005206 3300003771 Bacteria 7553
30 Ga0055537_1001319 3300003773 Bacteria 10151
31 Ga0055524_1000073 3300003775 Bacteria 123033
32 Ga0055524_1005940 3300003775 Bacteria 5373
33 Ga0055536_1004311 3300003781 Bacteria 7318
34 Ga0055534_1000714 3300003784 Bacteria 16273
35 Ga0055528_1007563 3300003790 Bacteria 4788
36 Ga0055528_1037524 3300003790 Bacteria 1138
37 Ga0055530_10001983 3300003791 Bacteria 13918
38 Ga0055540_1000037 3300003792 Bacteria 162957
39 Ga0055531_10001381 3300003794 Bacteria 18012
40 Ga0055531_10006354 3300003794 Bacteria 6724
41 Ga0065165_1000290 3300005262 Bacteria 85623
42 Ga0065165_1001212 3300005262 Bacteria 29719
43 Ga0065165_1002321 3300005262 Bacteria 16656
44 Ga0065165_1006773 3300005262 Bacteria 5865
45 Ga0070658_10040386 3300005327 Bacteria 3764
46 Ga0070658_10150569 3300005327 Bacteria 1948
47 Ga0070658_10169870 3300005327 Bacteria 1832
48 Ga0070676_10021195 3300005328 Bacteria 3637
49 Ga0068869_100023567 3300005334 Bacteria 4253
50 Ga0068868_100233152 3300005338 Bacteria 1545
51 Ga0068868_100691547 3300005338 Bacteria 912
52 Ga0070660_100006480 3300005339 Bacteria 8116
53 Ga0070675_100070901 3300005354 Bacteria 2889
54 Ga0070671_100602991 3300005355 Unclassified 949
55 Ga0070673_100015711 3300005364 Bacteria 5327
56 Ga0070673_100019732 3300005364 Bacteria 4845
57 Ga0070659_100018642 3300005366 Bacteria 5238
58 Ga0070659_100105768 3300005366 Bacteria 2268
59 Ga0070667_100277559 3300005367 Bacteria 1504
60 Ga0070667_100741200 3300005367 Bacteria 910
61 Ga0070667_101565808 3300005367 Bacteria 619
62 Ga0070663_100129261 3300005455 Bacteria 1916
63 Ga0070678_100106607 3300005456 Bacteria 2184
64 Ga0068867_100319769 3300005459 Bacteria 1285
65 Ga0070706_100329915 3300005467 Bacteria 1423
66 Ga0070672_100336543 3300005543 Bacteria 1285
67 Ga0068855_100014930 3300005563 Bacteria 9358
68 Ga0068857_100112397 3300005577 Bacteria 2449
69 Ga0068854_100133114 3300005578 Bacteria 1900
70 Ga0068859_100346274 3300005617 Bacteria 1581
71 Ga0068859_100761994 3300005617 Bacteria 1056
72 Ga0068864_100064947 3300005618 Bacteria 3166
73 Ga0068861_100051704 3300005719 Bacteria 3120
74 Ga0068858_100341417 3300005842 Bacteria 1433
75 Ga0068860_100047191 3300005843 Bacteria 4106
76 Ga0068860_100102709 3300005843 Bacteria 2728
77 Ga0075365_10079935 3300006038 Bacteria 2213
78 Ga0075365_10643946 3300006038 Bacteria 749
79 Ga0075368_10003301 3300006042 Bacteria 5372
80 Ga0075364_10035671 3300006051 Bacteria 3214
81 Ga0075362_10025205 3300006177 Bacteria 2529
82 Ga0075362_10197575 3300006177 Bacteria 978
83 Ga0075367_10139450 3300006178 Bacteria 1502
84 Ga0075367_10140264 3300006178 Bacteria 1497
85 Ga0075369_10173737 3300006186 Bacteria 990
86 Ga0075366_10000511 3300006195 Bacteria 17917
87 Ga0075366_10002013 3300006195 Bacteria 10309
88 Ga0075366_10012379 3300006195 Bacteria 4839
89 Ga0075366_10012389 3300006195 Bacteria 4837
90 Ga0075366_10014929 3300006195 Bacteria 4441
91 Ga0075366_10016715 3300006195 Bacteria 4218
92 Ga0075366_10118978 3300006195 Bacteria 1591
93 Ga0075370_10000514 3300006353 Bacteria 14756
94 Ga0075370_10003854 3300006353 Bacteria 7182
95 Ga0075370_10014058 3300006353 Bacteria 4263
96 Ga0075370_10038290 3300006353 Bacteria 2698
97 Ga0068865_101436396 3300006881 Bacteria 617
98 Ga0097620_100346257 3300006931 Bacteria 1581
99 Ga0097620_100761950 3300006931 Bacteria 1056
100 Ga0099823_1000016 3300006944 Bacteria 87614
101 Ga0105245_10234563 3300009098 Bacteria 1776
102 Ga0105241_10400488 3300009174 Bacteria 1204
103 Ga0105241_11268141 3300009174 Unclassified 700
104 Ga0105242_10155877 3300009176 Bacteria 1995
105 Ga0105248_10056750 3300009177 Bacteria 4393
106 Ga0105237_10026249 3300009545 Bacteria 5953
107 Ga0105246_10076786 3300011119 Bacteria 2368
108 Ga0157319_1000005 3300012497 Bacteria 372810
109 Ga0157374_10539565 3300013296 Bacteria 1173
110 Ga0157378_10096579 3300013297 Bacteria 2693
111 Ga0163162_10195045 3300013306 Bacteria 2154
112 Ga0163162_11050759 3300013306 Bacteria 922
113 Ga0157375_10074999 3300013308 Bacteria 3406
114 Ga0157375_10208315 3300013308 Bacteria 2112
115 Ga0157375_11071097 3300013308 Bacteria 943
116 Ga0157375_11166449 3300013308 Bacteria 903
117 Ga0157375_11452589 3300013308 Bacteria 809
118 Ga0163163_10384990 3300014325 Bacteria 1460
119 Ga0157379_10031217 3300014968 Bacteria 4746
120 Ga0157379_10866391 3300014968 Bacteria 855
121 Ga0213872_10000131 3300021361 Bacteria 68632
122 Ga0213872_10146497 3300021361 Bacteria 1033
123 Ga0209435_100002 3300025206 Bacteria 794178
124 Ga0209674_100066 3300025226 Bacteria 256739
125 Ga0209674_109552 3300025226 Bacteria 1076
126 Ga0209563_100013 3300025230 Bacteria 941463
127 Ga0209563_100129 3300025230 Bacteria 99977
128 Ga0209563_106452 3300025230 Bacteria 2011
129 Ga0209258_100074 3300025242 Bacteria 271062
130 Ga0209258_101051 3300025242 Bacteria 12152
131 Ga0207425_1000513 3300025245 Bacteria 23641
132 Ga0209646_1000001 3300025246 Bacteria 3092932
133 Ga0209026_1000001 3300025250 Bacteria 1228671
134 Ga0209677_100052 3300025253 Bacteria 167826
135 Ga0209148_1035094 3300025254 Bacteria 723
136 Ga0209759_1000001 3300025256 Bacteria 2799452
137 Ga0209759_1000564 3300025256 Bacteria 37417
138 Ga0209759_1001901 3300025256 Bacteria 10270
139 Ga0209759_1014434 3300025256 Bacteria 2089
140 Ga0209565_1000128 3300025263 Bacteria 108959
141 Ga0209455_1000066 3300025272 Bacteria 316811
142 Ga0209673_1000008 3300025273 Bacteria 626013
143 Ga0209673_1005115 3300025273 Bacteria 6721
144 Ga0209673_1007131 3300025273 Bacteria 5231
145 Ga0209673_1023613 3300025273 Bacteria 2089
146 Ga0209130_1000338 3300025284 Bacteria 53907
147 Ga0209675_1000099 3300025291 Bacteria 128911
148 Ga0209676_1000023 3300025292 Bacteria 589732
149 Ga0209025_1003851 3300025294 Bacteria 13627
150 Ga0209025_1013957 3300025294 Bacteria 4998
151 Ga0209564_1000008 3300025295 Bacteria 953227
152 Ga0209564_1000543 3300025295 Bacteria 60959
153 Ga0209564_1001126 3300025295 Bacteria 31456
154 Ga0209758_1000124 3300025297 Bacteria 189933
155 Ga0209758_1018620 3300025297 Bacteria 3392
156 Ga0209050_1000022 3300025298 Bacteria 565239
157 Ga0209050_1000718 3300025298 Bacteria 48528
158 Ga0209050_1002415 3300025298 Bacteria 16117
159 Ga0209256_1000001 3300025299 Bacteria 2166974
160 Ga0209256_1000410 3300025299 Bacteria 67789
161 Ga0209256_1000820 3300025299 Bacteria 39537
162 Ga0209256_1038224 3300025299 Bacteria 1245
163 Ga0207426_1003322 3300025302 Bacteria 8893
164 Ga0209051_1000013 3300025303 Bacteria 565239
165 Ga0209051_1000726 3300025303 Bacteria 35771
166 Ga0209257_1000042 3300025304 Bacteria 537149
167 Ga0209257_1000774 3300025304 Bacteria 47334
168 Ga0209257_1001459 3300025304 Bacteria 27942
169 Ga0207645_10040533 3300025907 Bacteria 2982
170 Ga0207705_10090145 3300025909 Bacteria 2244
171 Ga0207705_10107003 3300025909 Bacteria 2063
172 Ga0207705_10632259 3300025909 Bacteria 832
173 Ga0207671_10130167 3300025914 Bacteria 1931
174 Ga0207657_10019672 3300025919 Bacteria 6402
175 Ga0207659_10161332 3300025926 Bacteria 1760
176 Ga0207644_10151077 3300025931 Bacteria 1797
177 Ga0207644_10160624 3300025931 Bacteria 1746
178 Ga0207644_10683904 3300025931 Bacteria 855
179 Ga0207706_10013768 3300025933 Bacteria 7339
180 Ga0207686_10014377 3300025934 Bacteria 4404
181 Ga0207691_10075863 3300025940 Bacteria 3030
182 Ga0207711_10006659 3300025941 Bacteria 9726
183 Ga0207689_10024806 3300025942 Bacteria 5028
184 Ga0207689_10115660 3300025942 Bacteria 2205
185 Ga0207667_10027371 3300025949 Bacteria 6206
186 Ga0207667_10218492 3300025949 Bacteria 1953
187 Ga0207651_10002726 3300025960 Bacteria 8474
188 Ga0207651_10862850 3300025960 Bacteria 805
189 Ga0207640_10058224 3300025981 Bacteria 2545
190 Ga0207658_10259743 3300025986 Bacteria 1480
191 Ga0207658_10751100 3300025986 Bacteria 883
192 Ga0207658_11277293 3300025986 Bacteria 671
193 Ga0207677_10351644 3300026023 Bacteria 1235
194 Ga0207677_10490129 3300026023 Unclassified 1061
195 Ga0207703_10254030 3300026035 Bacteria 1586
196 Ga0207678_10064244 3300026067 Bacteria 3154
197 Ga0207641_10066689 3300026088 Bacteria 3081
198 Ga0207648_10033989 3300026089 Bacteria 4496
199 Ga0207676_10014402 3300026095 Bacteria 5690
200 Ga0207674_10045888 3300026116 Bacteria 4491
201 Ga0207675_100019391 3300026118 Bacteria 6345
202 Ga0209389_1001405 3300027296 Bacteria 16897
203 Ga0209371_1007228 3300027312 Bacteria 3912
204 Ga0209974_10008186 3300027876 Bacteria 3579
205 Ga0209974_10011629 3300027876 Bacteria 2954
206 Ga0268264_10030739 3300028381 Bacteria 4402
207 Ga0265336_10000024 3300028666 Bacteria 188787
208 Ga0307517_10001980 3300028786 Bacteria 33373
209 Ga0307517_10103140 3300028786 Bacteria 2231
210 Ga0307515_10442275 3300028794 Unclassified 917
211 Ga0265324_10001205 3300029957 Bacteria 15349
212 Ga0268256_1007318 3300030500 Bacteria 3957
213 Ga0307513_10006082 3300031456 Bacteria 15835
214 Ga0307513_10018577 3300031456 Bacteria 8302
215 Ga0307513_10056911 3300031456 Bacteria 4171
216 Ga0307509_10000249 3300031507 Bacteria 87094
217 Ga0307509_10004509 3300031507 Bacteria 20026
218 Ga0307509_10008908 3300031507 Bacteria 12652
219 Ga0307509_10208401 3300031507 Bacteria 1783
220 Ga0307509_10393090 3300031507 Bacteria 1096
221 Ga0307509_10647363 3300031507 Bacteria 726
222 Ga0307408_100019721 3300031548 Bacteria 4543
223 Ga0307408_100022284 3300031548 Bacteria 4302
224 Ga0307508_10000143 3300031616 Bacteria 85046
225 Ga0307508_10005160 3300031616 Bacteria 12503
226 Ga0307508_10036011 3300031616 Bacteria 4457
227 Ga0307516_10001817 3300031730 Bacteria 29320
228 Ga0307516_10005873 3300031730 Bacteria 14531
229 Ga0307406_10262481 3300031901 Bacteria 1307
230 Ga0307412_10019955 3300031911 Bacteria 4070
231 Ga0307507_10281174 3300033179 Bacteria 1040
232 Ga0307510_10048179 3300033180 Bacteria 4551
233 Ga0373931_0014455 3300035691 Bacteria 3859
234 Ga0373937_0325909 3300036401 Bacteria 1453
235 Ga0373925_0157276 3300037068 Bacteria 1788
236 Ga0395905_0053758 3300037471 Bacteria 3769
237 Ga0395905_0084542 3300037471 Bacteria 2973
238 Ga0395905_0087289 3300037471 Bacteria 2925
239 Ga0395905_0145603 3300037471 Bacteria 2229
240 Ga0436361_0185784 3300039447 Bacteria 1043
241 Ga0451800_1312607 3300041459 Bacteria 850
242 Ga0451807_2452816 3300041486 Bacteria 836
243 Ga0439459_0004541 3300042438 Bacteria 2237
244 Ga0439464_0141691 3300042439 Bacteria 749
245 Ga0453683_0005720 3300044673 Bacteria 8629
246 Ga0466965_0017789 3300044683 Bacteria 3400
247 Ga0466965_0036696 3300044683 Bacteria 2404
248 Ga0466965_0410489 3300044683 Bacteria 749
249 Ga0466966_0001608 3300044684 Bacteria 14540
250 Ga0466961_0021561 3300044693 Bacteria 4145
251 Ga0466961_0041184 3300044693 Bacteria 2961
252 Ga0466961_0227077 3300044693 Bacteria 1149
253 Ga0466963_0093568 3300044694 Bacteria 2049
254 Ga0466964_0011087 3300044706 Bacteria 3405
255 Ga0466964_0152551 3300044706 Bacteria 1072
256 Ga0453684_0026485 3300044712 Bacteria 8369
257 Ga0453684_0062252 3300044712 Bacteria 4781
258 Ga0453684_0064942 3300044712 Bacteria 4658
259 Ga0453684_1337710 3300044712 Bacteria 746
260 Ga0466971_0001621 3300044719 Bacteria 9495
261 Ga0466971_0118125 3300044719 Bacteria 1226
262 Ga0466968_0051911 3300044735 Bacteria 1753
263 Ga0466970_0000785 3300044765 Bacteria 15347
264 Ga0466957_0153408 3300044842 Bacteria 1491
265 Ga0466957_0215530 3300044842 Bacteria 1266
266 Ga0466960_0100091 3300044901 Bacteria 1491
267 Ga0451576_0018111 3300045051 Bacteria 7728
268 Ga0466958_0017287 3300045836 Bacteria 4166
269 Ga0466958_0021302 3300045836 Bacteria 3786
270 Ga0495592_0002035 3300046454 Bacteria 14230
271 Ga0495651_0571138 3300046462 Bacteria 716
272 Ga0495639_0186840 3300046475 Bacteria 1010
273 Ga0495585_0252795 3300046492 Bacteria 879
274 Ga0495583_0000946 3300046506 Bacteria 33756
275 Ga0495606_0003394 3300046507 Bacteria 16932
276 Ga0495632_0017604 3300046519 Bacteria 3939
277 Ga0495648_0026255 3300046524 Bacteria 3925
278 Ga0495652_0414985 3300046529 Bacteria 950
279 Ga0495621_0002386 3300046539 Bacteria 5055
280 Ga0495622_0206595 3300046557 Bacteria 874
281 Ga0495625_0035306 3300046660 Bacteria 3686
282 Ga0495625_0080518 3300046660 Bacteria 2268
283 Ga0495625_0447064 3300046660 Bacteria 799
284 Ga0495670_0017119 3300046691 Bacteria 3565
285 Ga0495649_0003229 3300046694 Bacteria 11125
286 Ga0495649_0098428 3300046694 Bacteria 1556
287 Ga0495589_0004026 3300046794 Bacteria 7878
288 Ga0495686_0003418 3300047472 Bacteria 13793
289 Ga0495686_0034424 3300047472 Bacteria 3262
290 Ga0496100_0189109 3300048903 Bacteria 1494
291 Ga0496108_0112343 3300048911 Bacteria 2331
292 Ga0496109_0186635 3300048912 Bacteria 1948
293 Ga0496112_0029931 3300048915 Bacteria 5267
294 Ga0496113_0180015 3300048916 Bacteria 1676
295 Ga0496118_0201811 3300048921 Bacteria 1177
296 Ga0496124_0026809 3300048927 Bacteria 5188
297 Ga0501198_000024 3300049649 Bacteria 67171
298 Ga0501222_000020 3300049662 Bacteria 67164
299 Ga0501257_069067 3300049686 Bacteria 901
300 nmdc:mga00v17_56082_c1 3300050491 Bacteria 2408
301 nmdc:mga0yw44_250348_c1 3300050492 Bacteria 1179
302 nmdc:mga0yw44_597863_c1 3300050492 Bacteria 749
303 nmdc:mga0yw44_74542_c1 3300050492 Bacteria 2114
304 nmdc:mga0k408_10480_c1 3300050493 Bacteria 5014
305 nmdc:mga0k408_110738_c1 3300050493 Bacteria 1623
306 nmdc:mga0k408_13688_c1 3300050493 Bacteria 4455
307 nmdc:mga0k408_194208_c1 3300050493 Bacteria 1211
308 nmdc:mga0k408_1978_c1 3300050493 Bacteria 3387
309 nmdc:mga0k408_49346_c1 3300050493 Bacteria 2436
310 nmdc:mga0k408_8309_c1 3300050493 Bacteria 2683
311 nmdc:mga06z11_354347_c1 3300050494 Bacteria 879
312 nmdc:mga07m45_268485_c1 3300050496 Unclassified 993
313 nmdc:mga07m45_293_c1 3300050496 Bacteria 20191
314 nmdc:mga07m45_30013_c1 3300050496 Bacteria 3010
315 nmdc:mga07m45_3993_c1 3300050496 Bacteria 7176
316 nmdc:mga07m45_68595_c1 3300050496 Bacteria 2016
317 nmdc:mga07m45_78333_c1 3300050496 Bacteria 1886
318 nmdc:mga0sz30_18578_c1 3300050516 Bacteria 2784
319 nmdc:mga0sz30_40319_c1 3300050516 Bacteria 1963
320 nmdc:mga0sz30_94122_c1 3300050516 Bacteria 1305
321 Ga0500635_0000008 3300053080 Bacteria 167327
322 Ga0500578_0155688 3300053086 Unclassified 1421
323 Ga0500583_0043354 3300053092 Bacteria 2055
324 Ga0500651_0048364 3300053093 Bacteria 2672
325 Ga0500651_0087045 3300053093 Bacteria 1929
326 Ga0500572_099770 3300053111 Bacteria 927
327 Ga0500593_001947 3300053117 Bacteria 7453
328 Ga0500608_198378 3300053122 Bacteria 832
329 Ga0500568_0022830 3300053139 Bacteria 2669
330 Ga0500586_009093 3300053145 Bacteria 2740
331 Ga0500589_092604 3300053147 Bacteria 1328
332 Ga0500619_129372 3300053154 Bacteria 860
333 Ga0500622_0000552 3300053156 Bacteria 34296
334 Ga0500645_001906 3300053730 Bacteria 9923
335 Ga0500661_017150 3300055283 Bacteria 1293
336 Ga0466962_0080906 3300061719 Bacteria 1553
337 2643972861 2643221592 Bacteria 6608788
338 2644143292 2643221625 Bacteria 6512927
339 2644276271 2643221648 Bacteria 6521465
340 2831864621 2831864461 Bacteria 6502356
341 2886849312 2886848708 Bacteria 5632523
342 2928118054 2928115317 Bacteria 6477646
343 Ga0055524_1000317
344 JGI25155J39150_1000024
345 JGI25156J39149_1000005
346 JGI25156J39149_1011615
347 JGI25154J39366_1000017
348 JGI25157J39369_1000003
349 JGI25150J39212_1005003
350 JGI25159J45721_1001965
351 JGI25151J46595_10003242
352 JGI25151J46595_10004391
353 JGI25153J46596_10001636
354 rootH1_10097901
355 rootH2_10028249
356 rootH2_10081784
357 rootL2_10003381
358 rootL2_10107491
359 rootL2_10147086
360 rootH1_10036641
361 rootH1_10042252
362 rootH1_10064552
363 Ga0055539_1000538
364 Ga0055533_1000040
365 Ga0055525_1000004
366 Ga0055525_1000457
367 Ga0055535_1000774
368 Ga0055529_1000053
369 Ga0055526_1001565
370 Ga0055526_1001575
371 Ga0055526_1005206
372 Ga0055537_1001319
373 Ga0055524_1000073
374 Ga0055524_1005940
375 Ga0055536_1004311
376 Ga0055534_1000714
377 Ga0055528_1007563
378 Ga0055528_1037524
379 Ga0055530_10001983
380 Ga0055540_1000037
381 Ga0055531_10001381
382 Ga0055531_10006354
383 Ga0065165_1000290
384 Ga0065165_1001212
385 Ga0065165_1002321
386 Ga0065165_1006773
387 Ga0070658_10040386
388 Ga0070658_10150569
389 Ga0070658_10169870
390 Ga0070676_10021195
391 Ga0068869_100023567
392 Ga0068868_100233152
393 Ga0068868_100691547
394 Ga0070660_100006480
395 Ga0070675_100070901
396 Ga0070671_100602991
397 Ga0070673_100015711
398 Ga0070673_100019732
399 Ga0070659_100018642
400 Ga0070659_100105768
401 Ga0070667_100277559
402 Ga0070667_100741200
403 Ga0070667_101565808
404 Ga0070663_100129261
405 Ga0070678_100106607
406 Ga0068867_100319769
407 Ga0070706_100329915
408 Ga0070672_100336543
409 Ga0068855_100014930
410 Ga0068857_100112397
411 Ga0068854_100133114
412 Ga0068859_100346274
413 Ga0068859_100761994
414 Ga0068864_100064947
415 Ga0068861_100051704
416 Ga0068858_100341417
417 Ga0068860_100047191
418 Ga0068860_100102709
419 Ga0075365_10079935
420 Ga0075365_10643946
421 Ga0075368_10003301
422 Ga0075364_10035671
423 Ga0075362_10025205
424 Ga0075362_10197575
425 Ga0075367_10139450
426 Ga0075367_10140264
427 Ga0075369_10173737
428 Ga0075366_10000511
429 Ga0075366_10002013
430 Ga0075366_10012379
431 Ga0075366_10012389
432 Ga0075366_10014929
433 Ga0075366_10016715
434 Ga0075366_10118978
435 Ga0075370_10000514
436 Ga0075370_10003854
437 Ga0075370_10014058
438 Ga0075370_10038290
439 Ga0068865_101436396
440 Ga0097620_100346257
441 Ga0097620_100761950
442 Ga0099823_1000016
443 Ga0105245_10234563
444 Ga0105241_10400488
445 Ga0105241_11268141
446 Ga0105242_10155877
447 Ga0105248_10056750
448 Ga0105237_10026249
449 Ga0105246_10076786
450 Ga0157319_1000005
451 Ga0157374_10539565
452 Ga0157378_10096579
453 Ga0163162_10195045
454 Ga0163162_11050759
455 Ga0157375_10074999
456 Ga0157375_10208315
457 Ga0157375_11071097
458 Ga0157375_11166449
459 Ga0157375_11452589
460 Ga0163163_10384990
461 Ga0157379_10031217
462 Ga0157379_10866391
463 Ga0213872_10000131
464 Ga0213872_10146497
465 Ga0209435_100002
466 Ga0209674_100066
467 Ga0209674_109552
468 Ga0209563_100013
469 Ga0209563_100129
470 Ga0209563_106452
471 Ga0209258_100074
472 Ga0209258_101051
473 Ga0207425_1000513
474 Ga0209646_1000001
475 Ga0209026_1000001
476 Ga0209677_100052
477 Ga0209148_1035094
478 Ga0209759_1000001
479 Ga0209759_1000564
480 Ga0209759_1001901
481 Ga0209759_1014434
482 Ga0209565_1000128
483 Ga0209455_1000066
484 Ga0209673_1000008
485 Ga0209673_1005115
486 Ga0209673_1007131
487 Ga0209673_1023613
488 Ga0209130_1000338
489 Ga0209675_1000099
490 Ga0209676_1000023
491 Ga0209025_1003851
492 Ga0209025_1013957
493 Ga0209564_1000008
494 Ga0209564_1000543
495 Ga0209564_1001126
496 Ga0209758_1000124
497 Ga0209758_1018620
498 Ga0209050_1000022
499 Ga0209050_1000718
500 Ga0209050_1002415
501 Ga0209256_1000001
502 Ga0209256_1000410
503 Ga0209256_1000820
504 Ga0209256_1038224
505 Ga0207426_1003322
506 Ga0209051_1000013
507 Ga0209051_1000726
508 Ga0209257_1000042
509 Ga0209257_1000774
510 Ga0209257_1001459
511 Ga0207645_10040533
512 Ga0207705_10090145
513 Ga0207705_10107003
514 Ga0207705_10632259
515 Ga0207671_10130167
516 Ga0207657_10019672
517 Ga0207659_10161332
518 Ga0207644_10151077
519 Ga0207644_10160624
520 Ga0207644_10683904
521 Ga0207706_10013768
522 Ga0207686_10014377
523 Ga0207691_10075863
524 Ga0207711_10006659
525 Ga0207689_10024806
526 Ga0207689_10115660
527 Ga0207667_10027371
528 Ga0207667_10218492
529 Ga0207651_10002726
530 Ga0207651_10862850
531 Ga0207640_10058224
532 Ga0207658_10259743
533 Ga0207658_10751100
534 Ga0207658_11277293
535 Ga0207677_10351644
536 Ga0207677_10490129
537 Ga0207703_10254030
538 Ga0207678_10064244
539 Ga0207641_10066689
540 Ga0207648_10033989
541 Ga0207676_10014402
542 Ga0207674_10045888
543 Ga0207675_100019391
544 Ga0209389_1001405
545 Ga0209371_1007228
546 Ga0209974_10008186
547 Ga0209974_10011629
548 Ga0268264_10030739
549 Ga0265336_10000024
550 Ga0307517_10001980
551 Ga0307517_10103140
552 Ga0307515_10442275
553 Ga0265324_10001205
554 Ga0268256_1007318
555 Ga0307513_10006082
556 Ga0307513_10018577
557 Ga0307513_10056911
558 Ga0307509_10000249
559 Ga0307509_10004509
560 Ga0307509_10008908
561 Ga0307509_10208401
562 Ga0307509_10393090
563 Ga0307509_10647363
564 Ga0307408_100019721
565 Ga0307408_100022284
566 Ga0307508_10000143
567 Ga0307508_10005160
568 Ga0307508_10036011
569 Ga0307516_10001817
570 Ga0307516_10005873
571 Ga0307406_10262481
572 Ga0307412_10019955
573 Ga0307507_10281174
574 Ga0307510_10048179
575 Ga0373931_0014455
576 Ga0373937_0325909
577 Ga0373925_0157276
578 Ga0395905_0053758
579 Ga0395905_0084542
580 Ga0395905_0087289
581 Ga0395905_0145603
582 Ga0436361_0185784
583 Ga0451800_1312607
584 Ga0451807_2452816
585 Ga0439459_0004541
586 Ga0439464_0141691
587 Ga0453683_0005720
588 Ga0466965_0017789
589 Ga0466965_0036696
590 Ga0466965_0410489
591 Ga0466966_0001608
592 Ga0466961_0021561
593 Ga0466961_0041184
594 Ga0466961_0227077
595 Ga0466963_0093568
596 Ga0466964_0011087
597 Ga0466964_0152551
598 Ga0453684_0026485
599 Ga0453684_0062252
600 Ga0453684_0064942
601 Ga0453684_1337710
602 Ga0466971_0001621
603 Ga0466971_0118125
604 Ga0466968_0051911
605 Ga0466970_0000785
606 Ga0466957_0153408
607 Ga0466957_0215530
608 Ga0466960_0100091
609 Ga0451576_0018111
610 Ga0466958_0017287
611 Ga0466958_0021302
612 Ga0495592_0002035
613 Ga0495651_0571138
614 Ga0495639_0186840
615 Ga0495585_0252795
616 Ga0495583_0000946
617 Ga0495606_0003394
618 Ga0495632_0017604
619 Ga0495648_0026255
620 Ga0495652_0414985
621 Ga0495621_0002386
622 Ga0495622_0206595
623 Ga0495625_0035306
624 Ga0495625_0080518
625 Ga0495625_0447064
626 Ga0495670_0017119
627 Ga0495649_0003229
628 Ga0495649_0098428
629 Ga0495589_0004026
630 Ga0495686_0003418
631 Ga0495686_0034424
632 Ga0496100_0189109
633 Ga0496108_0112343
634 Ga0496109_0186635
635 Ga0496112_0029931
636 Ga0496113_0180015
637 Ga0496118_0201811
638 Ga0496124_0026809
639 Ga0501198_000024
640 Ga0501222_000020
641 Ga0501257_069067
642 nmdc:mga00v17_56082_c1
643 nmdc:mga0yw44_250348_c1
644 nmdc:mga0yw44_597863_c1
645 nmdc:mga0yw44_74542_c1
646 nmdc:mga0k408_10480_c1
647 nmdc:mga0k408_110738_c1
648 nmdc:mga0k408_13688_c1
649 nmdc:mga0k408_194208_c1
650 nmdc:mga0k408_1978_c1
651 nmdc:mga0k408_49346_c1
652 nmdc:mga0k408_8309_c1
653 nmdc:mga06z11_354347_c1
654 nmdc:mga07m45_268485_c1
655 nmdc:mga07m45_293_c1
656 nmdc:mga07m45_30013_c1
657 nmdc:mga07m45_3993_c1
658 nmdc:mga07m45_68595_c1
659 nmdc:mga07m45_78333_c1
660 nmdc:mga0sz30_18578_c1
661 nmdc:mga0sz30_40319_c1
662 nmdc:mga0sz30_94122_c1
663 Ga0500635_0000008
664 Ga0500578_0155688
665 Ga0500583_0043354
666 Ga0500651_0048364
667 Ga0500651_0087045
668 Ga0500572_099770
669 Ga0500593_001947
670 Ga0500608_198378
671 Ga0500568_0022830
672 Ga0500586_009093
673 Ga0500589_092604
674 Ga0500619_129372
675 Ga0500622_0000552
676 Ga0500645_001906
677 Ga0500661_017150
678 Ga0466962_0080906
679 2643972861
680 2644143292
681 2644276271
682 2831864621
683 2886849312
684 2928118054

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF01202

SKI

Shikimate kinase

11

173

0.93

PF13207

AAA_17

AAA domain

8

127

0.82

PF13238

AAA_18

AAA domain

6

130

0.71

Structural Annotation

Top 5 Hits

ID Description Score Start End
1u8a-assembly1.cif.gz_A crystal structure of mycobacterium tuberculosis shikimate kinase in complex with shikimate and adp at 2.15 angstrom resolution 0.966 42 203
2dft-assembly1.cif.gz_A structure of shikimate kinase from mycobacterium tuberculosis complexed with adp and mg at 2.8 angstrons of resolution 0.9606 42 203
1kag-assembly2.cif.gz_B crystal structure of the escherichia coli shikimate kinase i (arok) 0.958 40 204
2iyz-assembly1.cif.gz_A shikimate kinase from mycobacterium tuberculosis in complex with shikimate-3-phosphate and adp 0.9468 42 212
1shk-assembly2.cif.gz_B the three-dimensional structure of shikimate kinase from erwinia chrysanthemi 0.9429 41 206
ID Description Score Start End Superfamily
af_I1JY85_1_186_3.40.50.300 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;P-loop containing nucleotide triphosphate hydrolases 0.9268 49 208 3.40.50.300
2shkA00 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;P-loop containing nucleotide triphosphate hydrolases 0.9267 40 206 3.40.50.300
3n2eC00 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;P-loop containing nucleotide triphosphate hydrolases 0.9266 40 210 3.40.50.300
4y0aA00 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;P-loop containing nucleotide triphosphate hydrolases 0.9259 39 211 3.40.50.300
1kagA00 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;P-loop containing nucleotide triphosphate hydrolases 0.9153 38 204 3.40.50.300
ID Description Score Start End GO Terms
AF-A2SKH2-F1-model_v4 Shikimate kinase (SK) (EC 2.7.1.71) 0.9936 40 211 GO:0000287
GO:0004765
GO:0005524
GO:0005829
GO:0008652
GO:0009073
GO:0009423
AF-J2JY20-F1-model_v4 Shikimate kinase (SK) (EC 2.7.1.71) 0.9909 56 210 GO:0000287
GO:0004765
GO:0005524
GO:0005829
GO:0008652
GO:0009073
GO:0009423
AF-U5N849-F1-model_v4 Shikimate kinase (SK) (EC 2.7.1.71) 0.9871 42 203 GO:0000287
GO:0004765
GO:0005524
GO:0005829
GO:0008652
GO:0009073
GO:0009423
AF-A0A368C254-F1-model_v4 shikimate kinase (EC 2.7.1.71) 0.9817 41 129 GO:0004765
GO:0005524
GO:0005829
GO:0008652
GO:0009073
GO:0009423
AF-A0A841RNE0-F1-model_v4 deleted 0.9813 40 212

Map