F415110

General Info

Members Datasets Scaffolds Average Seq Length
342 218 684 300

Family's Representative Sequence

Representative Sequence 3300006353|Ga0075370_10043426|Ga0075370_100434262
Length 318
Sequence MRRAGPRAPRPSPPADGMSTMHASLPLQAALRQVSHEMDRQFDALLPVPGDPRAALYEAMRHATIGGGKRLRPLLVFATARLFGVDRSCAARVATAIECIHVYSLIHDDLPAMDDDDMRRGKPTVHRAFDEATAILAGDCLHALAFELLAHEATHPDPFVRIELSGELARASGPSGMAGGQMMDLEAEKSSFDLPTVTRLQAMKTGALIACSVEMGAILGRVPPEGRTGLRGYARDLGLAFQIADDILDAEGDEAVAGKKLRKDGERGKETFLSLLGIDRAREQAQMLVAQAVSHLHAHGSEADLLRDIARFVLERDR

Samples

Sample ID Description Type Environment
1 3300006353 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 Metagenome Endosphere
2 3300000041 Arabidopsis rhizosphere microbial communities from the University of North Carolina - sample from Arabidopsis cpr5 old rhizosphere Metagenome Rhizosphere
3 3300002459 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6 Metagenome Rhizosphere
4 3300002774 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mTSA Metagenome Endosphere
5 3300003215 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF Metagenome Endosphere
6 3300003322 Sugarcane root Sample L2 Metagenome Unclassified
7 3300003773 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mTSA_r2 Metagenome Endosphere
8 3300003775 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mCL_r2 Metagenome Endosphere
9 3300003781 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mLB_r2 Metagenome Endosphere
10 3300003791 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 Metagenome Endosphere
11 3300003792 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mMS_r2 Metagenome Endosphere
12 3300003794 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 Metagenome Endosphere
13 3300005262 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMF (version 2) (version 3) Metagenome Endosphere
14 3300005331 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG Metagenome Rhizosphere
15 3300005333 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-3 metaG Metagenome Rhizosphere
16 3300005335 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG Metagenome Rhizosphere
17 3300005347 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG Metagenome Rhizosphere
18 3300005353 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG Metagenome Rhizosphere
19 3300005355 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG Metagenome Rhizosphere
20 3300005356 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG Metagenome Rhizosphere
21 3300005364 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG Metagenome Rhizosphere
22 3300005367 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG Metagenome Rhizosphere
23 3300005440 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-3 metaG Metagenome Rhizosphere
24 3300005445 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG Metagenome Rhizosphere
25 3300005456 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG Metagenome Rhizosphere
26 3300005459 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 Metagenome Rhizosphere
27 3300005539 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 Metagenome Rhizosphere
28 3300005543 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG Metagenome Rhizosphere
29 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
30 3300005564 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG Metagenome Rhizosphere
31 3300005577 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 Metagenome Rhizosphere
32 3300005615 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-3 metaG Metagenome Rhizosphere
33 3300005617 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 Metagenome Rhizosphere
34 3300005618 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 Metagenome Rhizosphere
35 3300005719 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 Metagenome Rhizosphere
36 3300005841 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 Metagenome Rhizosphere
37 3300005842 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 Metagenome Rhizosphere
38 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
39 3300005844 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 Metagenome Rhizosphere
40 3300006042 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-3 Metagenome Endosphere
41 3300006178 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 Metagenome Endosphere
42 3300006847 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 Metagenome Rhizosphere
43 3300006881 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 Metagenome Rhizosphere
44 3300006931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 (version 2) (version 2) Metagenome Rhizosphere
45 3300009011 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-4 metaG Metagenome Rhizosphere
46 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
47 3300009101 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG Metagenome Rhizosphere
48 3300009177 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG Metagenome Rhizosphere
49 3300009553 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG Metagenome Rhizosphere
50 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
51 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
52 3300014326 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG Metagenome Rhizosphere
53 3300014968 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG Metagenome Rhizosphere
54 3300017792 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG Metagenome Rhizosphere
55 3300020081 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-3 (Metagenome Metatranscriptome) (v2) (version 2) Metatranscriptome Rhizosphere
56 3300020082 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-4 (Metagenome Metatranscriptome) (v2) (version 2) Metatranscriptome Rhizosphere
57 3300021377 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R7 Metagenome Unclassified
58 3300021384 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 Metagenome Unclassified
59 3300025229 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mLB_r2 (SPAdes) (version 2) Metagenome Endosphere
60 3300025245 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mTSA (SPAdes) (version 3) Metagenome Endosphere
61 3300025258 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMS (SPAdes) (version 3) Metagenome Endosphere
62 3300025263 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mTSA_r2 (SPAdes) (version 3) Metagenome Endosphere
63 3300025273 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMS_r2 (SPAdes) (version 3) Metagenome Endosphere
64 3300025292 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mLB_r2 (SPAdes) (version 2) Metagenome Endosphere
65 3300025294 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mLB (SPAdes) (version 2) Metagenome Endosphere
66 3300025295 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMF_r2 (SPAdes) (version 3) Metagenome Endosphere
67 3300025297 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF (SPAdes) (version 2) Metagenome Endosphere
68 3300025298 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 (SPAdes) (version 2) Metagenome Endosphere
69 3300025299 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mCL_r2 (SPAdes) (version 3) Metagenome Endosphere
70 3300025303 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mMS_r2 (SPAdes) (version 2) Metagenome Endosphere
71 3300025304 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
72 3300025315 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA, with PhiX - S5 (SPAdes) (version 2) Metagenome Rhizosphere
73 3300025893 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
74 3300025900 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
75 3300025903 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
76 3300025923 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
77 3300025925 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
78 3300025926 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
79 3300025931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
80 3300025933 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
81 3300025940 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
82 3300025941 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
83 3300025945 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
84 3300025972 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
85 3300025981 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 (SPAdes) (version 2) Metagenome Rhizosphere
86 3300025986 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
87 3300026035 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes) (version 2) Metagenome Rhizosphere
88 3300026041 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes) (version 2) Metagenome Rhizosphere
89 3300026088 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes) (version 2) Metagenome Rhizosphere
90 3300026089 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes) (version 2) Metagenome Rhizosphere
91 3300026095 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes) (version 2) Metagenome Rhizosphere
92 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
93 3300026118 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes) (version 2) Metagenome Rhizosphere
94 3300026121 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
95 3300027866 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-3 (SPAdes) (version 2) Metagenome Endosphere
96 3300028380 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes) (version 2) Metagenome Rhizosphere
97 3300028381 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) Metagenome Rhizosphere
98 3300028786 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 23_EM Metagenome Unclassified
99 3300030733 Rhizosphere soil microbial communities in infected wheat plant from Wellcamp field in Toowoomba, Australia - sample 2 Metagenome Rhizosphere
100 3300031548 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3 Metagenome Rhizosphere
101 3300031731 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-1 Metagenome Rhizosphere
102 3300031824 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-2 Metagenome Rhizosphere
103 3300031852 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-3 Metagenome Rhizosphere
104 3300031901 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2 Metagenome Rhizosphere
105 3300031903 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-1 Metagenome Rhizosphere
106 3300031911 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1 Metagenome Rhizosphere
107 3300031995 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2 Metagenome Rhizosphere
108 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
109 3300032004 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3 Metagenome Rhizosphere
110 3300032005 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-1 Metagenome Rhizosphere
111 3300032126 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-2 Metagenome Rhizosphere
112 3300037312 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_B SG_2 Metagenome Rhizosphere
113 3300037853 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 v2 Metagenome Unclassified
114 3300038705 Coralloid root microbial communities from Raymundo Flores, Chiapas, Mexico - RF1-T1 Metagenome Unclassified
115 3300039437 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 v2 Metagenome Unclassified
116 3300039450 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R7 v2 Metagenome Unclassified
117 3300041404 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0216DE14Z070717_5272 Metagenome Rhizosphere
118 3300041406 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0503DE14Z070717_5284 Metagenome Rhizosphere
119 3300041407 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0216DE14Z080117_5416 Metagenome Rhizosphere
120 3300041410 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0116DE14Z082817_5596 Metagenome Rhizosphere
121 3300041413 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - SB0710WE14Z080117_6839 Metagenome Rhizosphere
122 3300041486 Perennial ryegrass root microbial community from Lincoln, Canterbury, New Zealand - RGR18_9 MetaG Metagenome Rhizoplane
123 3300041997 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0317DE14Z082817_5607 Metagenome Rhizosphere
124 3300042002 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0612DE14Z082817_5616 Metagenome Rhizosphere
125 3300042004 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0612WE14Z082817_5619 Metagenome Rhizosphere
126 3300042006 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0612WE14Z080117_5437 Metagenome Rhizosphere
127 3300042010 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0503WE14Z080117_5431 Metagenome Rhizosphere
128 3300042014 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0216WE14Z070717_5275 Metagenome Rhizosphere
129 3300042015 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0503WE14Z070717_5287 Metagenome Rhizosphere
130 3300042156 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0116WE14Z082817_5593 Metagenome Rhizosphere
131 3300042435 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0503WE14Z082817_5613 Metagenome Rhizosphere
132 3300046452 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-351-Co3_11_46 rhizosphere Metagenome Rhizosphere
133 3300046453 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co3_8_57 rhizosphere Metagenome Rhizosphere
134 3300046460 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co3_31_37 rhizosphere Metagenome Rhizosphere
135 3300046471 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co3_9_34 rhizosphere Metagenome Rhizosphere
136 3300046506 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co1_30_3 rhizosphere Metagenome Rhizosphere
137 3300046512 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co2_50_17 rhizosphere Metagenome Rhizosphere
138 3300046513 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-351-Co2_42_17 rhizosphere Metagenome Rhizosphere
139 3300046519 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co2_51_16 rhizosphere Metagenome Rhizosphere
140 3300046520 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co2_47_23 rhizosphere Metagenome Rhizosphere
141 3300046524 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co1_12_9 rhizosphere Metagenome Rhizosphere
142 3300046528 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co1_24_3 rhizosphere Metagenome Rhizosphere
143 3300046537 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co3_21_62 rhizosphere Metagenome Rhizosphere
144 3300046539 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co3_13_34 rhizosphere Metagenome Rhizosphere
145 3300046557 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL1_25_34 rhizosphere Metagenome Rhizosphere
146 3300046558 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co3_6_53 rhizosphere Metagenome Rhizosphere
147 3300046616 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co1_14_4 rhizosphere Metagenome Rhizosphere
148 3300046660 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co1_32_7 rhizosphere Metagenome Rhizosphere
149 3300046664 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co1_5_9 rhizosphere Metagenome Rhizosphere
150 3300046665 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co3_16_51 rhizosphere Metagenome Rhizosphere
151 3300046684 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co2_44_8 rhizosphere Metagenome Rhizosphere
152 3300046691 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co3_14_51 rhizosphere Metagenome Rhizosphere
153 3300046692 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co1_37_5 rhizosphere Metagenome Rhizosphere
154 3300047469 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co3_31_39 rhizosphere Metagenome Rhizosphere
155 3300047470 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWA-24-3-Co1_3_5 rhizosphere Metagenome Rhizosphere
156 3300047472 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co2_54_22 rhizosphere Metagenome Rhizosphere
157 3300048906 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1d N15 Metagenome Rhizoplane
158 3300048911 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8v unlabeled Metagenome Rhizoplane
159 3300048912 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8w unlabeled Metagenome Rhizoplane
160 3300048913 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4c N15 Metagenome Rhizoplane
161 3300048914 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4d N15 Metagenome Rhizoplane
162 3300048918 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6d N15 Metagenome Rhizoplane
163 3300048924 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_3e N15 Metagenome Unclassified
164 3300048925 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8x unlabeled Metagenome Unclassified
165 3300048926 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8y unlabeled Metagenome Unclassified
166 3300048927 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_4e N15 Metagenome Unclassified
167 3300048928 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_5e N15 Metagenome Unclassified
168 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
169 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
170 3300049585 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_03 Metagenome Rhizosphere
171 3300049587 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_02 Metagenome Rhizosphere
172 3300049663 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - I4_A_2_drought Metagenome Rhizosphere
173 3300049664 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - B5_A_2_drought Metagenome Rhizosphere
174 3300049668 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - I4_B_2_drought Metagenome Rhizosphere
175 3300049707 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - B5_B_2_drought Metagenome Rhizosphere
176 3300049758 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - D15_A_3_drought Metagenome Rhizosphere
177 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
178 3300049853 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - F4_A_2_drought Metagenome Rhizosphere
179 3300050494 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 re-annotation Metagenome Endosphere
180 3300050495 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-3 re-annotation Metagenome Endosphere
181 3300050496 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 re-annotation Metagenome Endosphere
182 3300050510 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 re-annotation Metagenome Rhizosphere
183 3300050511 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation Metagenome Rhizosphere
184 3300053087 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co3_14_51 endosphere Metagenome Endosphere
185 3300053094 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-234-CL1_24_28 endosphere Metagenome Endosphere
186 3300053104 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co2_41_23 endosphere Metagenome Endosphere
187 3300053118 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co3_13_34 endosphere Metagenome Endosphere
188 3300053119 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL1_25_34 endosphere Metagenome Endosphere
189 3300053130 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co2_44_8 endosphere Metagenome Endosphere
190 3300053134 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co1_7_5 endosphere Metagenome Endosphere
191 3300053136 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL2_62_7 endosphere Metagenome Endosphere
192 3300053139 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co1_23_3 endosphere Metagenome Endosphere
193 3300053151 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co1_22_4 endosphere Metagenome Endosphere
194 3300053156 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 endosphere Metagenome Endosphere
195 3300053157 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-86-CL2_69_17 endosphere Metagenome Endosphere
196 3300053158 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-866-Co1_10_5 endosphere Metagenome Endosphere
197 3300053177 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL1_23_5 endosphere Metagenome Endosphere
198 3300053730 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co2_68_28 endosphere Metagenome Endosphere
199 3300055283 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-4579-CL1_25_23_RD_R2 endosphere Metagenome Endosphere
200 3300059424 Rhizosphere soil microbial communities from sorghum plant in University of Arizona Maricopa Agricultural Center, AZ, USA - 10_0-15_MAC_RHIZO_20210810 Metagenome Rhizosphere
201 2512564014 Sphingobium sp. AP49 Isolate Rhizosphere
202 2599185359 Sphingomonas sp. NFR04 Isolate Rhizoplane
203 2643221622 Sphingomonas sp. Root241 Isolate Unclassified
204 2775507255 Sphingobium indicum B90A Isolate Rhizosphere
205 2808606401 Sphingobium sp. AEW010 Isolate Rhizosphere
206 2808606404 Sphingobium sp. AEW013 Isolate Rhizosphere
207 2808606405 Sphingobium sp. AEW001 Isolate Rhizosphere
208 2818991466 Sphingomonas trueperi 1152a Isolate Unclassified
209 2879163058 Sphingomonas pokkalii L3B27 Isolate Rhizosphere
210 2880518877 Sphingobium sp. JAI105 Isolate Rhizosphere
211 2885427238 Sphingomonas mesophila SYSUP0001 Isolate Stem Tuber
212 2896429255 Sphingomonas rhizophila KACC 19189 Isolate Rhizosphere
213 2919709256 Sphingobium xenophagum 4256 Isolate Unclassified
214 2928027323 Sphingomonas sp. 1185 Isolate Unclassified
215 2928526807 Sphingomonas trueperi 1770 Isolate Rhizosphere
216 2928968154 Sphingomonas trueperi 1075 Isolate Unclassified
217 2990265787 Sphingomonas sp. SORGH_AS802 Isolate Aerial Root
218 2993693658 Sphingomonas sp. SORGH_AS438 Isolate Aerial Root

Type Distribution

Type Percentage (%)
Metagenomes 94.15
Metatranscriptomes 0.58
Isolates 5.26

Biome Distribution

Category Percentage (%)
Aerial Root 0.58
Bulb 0
Endosphere 20.76
Nodule 0
Rhizoplane 2.92
Rhizosphere 66.08
Stem 0
Stem Tuber 0.29
Unclassified 0

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0075370_10043426 3300006353 Bacteria 2541
2 ARcpr5oldR_c002840 3300000041 Bacteria 1573
3 JGI24751J29686_10008397 3300002459 Bacteria 2113
4 JGI25150J39212_1000711 3300002774 Bacteria 11968
5 JGI25153J46596_10000008 3300003215 Bacteria 376808
6 JGI25153J46596_10000186 3300003215 Bacteria 60427
7 rootL2_10054065 3300003322 Bacteria 1286
8 rootL2_10065594 3300003322 Bacteria 2002
9 Ga0055537_1005121 3300003773 Bacteria 3578
10 Ga0055524_1000154 3300003775 Bacteria 80540
11 Ga0055536_1012993 3300003781 Bacteria 3039
12 Ga0055530_10000235 3300003791 Bacteria 49659
13 Ga0055530_10015196 3300003791 Bacteria 2528
14 Ga0055540_1003423 3300003792 Bacteria 7672
15 Ga0055540_1006395 3300003792 Bacteria 4685
16 Ga0055531_10000361 3300003794 Bacteria 44091
17 Ga0055531_10002285 3300003794 Bacteria 12963
18 Ga0065165_1002195 3300005262 Bacteria 17529
19 Ga0065165_1004795 3300005262 Bacteria 8074
20 Ga0065165_1005295 3300005262 Bacteria 7349
21 Ga0070670_100000964 3300005331 Bacteria 22587
22 Ga0070670_100001075 3300005331 Bacteria 21713
23 Ga0070670_100003439 3300005331 Bacteria 13136
24 Ga0070677_10000705 3300005333 Bacteria 11228
25 Ga0070666_10000089 3300005335 Bacteria 64147
26 Ga0070666_10134075 3300005335 Bacteria 1722
27 Ga0070668_100035049 3300005347 Bacteria 3825
28 Ga0070669_100000024 3300005353 Bacteria 173107
29 Ga0070669_100003409 3300005353 Bacteria 11441
30 Ga0070669_100018244 3300005353 Bacteria 5013
31 Ga0070669_100118539 3300005353 Bacteria 2016
32 Ga0070669_100203759 3300005353 Bacteria 1558
33 Ga0070671_100000006 3300005355 Bacteria 250635
34 Ga0070671_100031481 3300005355 Bacteria 4382
35 Ga0070674_100010543 3300005356 Bacteria 5593
36 Ga0070673_100034866 3300005364 Bacteria 3812
37 Ga0070667_100000051 3300005367 Bacteria 155117
38 Ga0070667_100137672 3300005367 Bacteria 2135
39 Ga0070705_100050586 3300005440 Bacteria 2418
40 Ga0070708_100039593 3300005445 Bacteria 4125
41 Ga0070678_100006580 3300005456 Bacteria 6830
42 Ga0068867_100064156 3300005459 Bacteria 2731
43 Ga0068853_100005871 3300005539 Bacteria 9677
44 Ga0070672_100005676 3300005543 Bacteria 8310
45 Ga0070665_100095368 3300005548 Bacteria 2980
46 Ga0070664_100061185 3300005564 Bacteria 3209
47 Ga0068857_100041131 3300005577 Bacteria 4099
48 Ga0068857_100142369 3300005577 Bacteria 2168
49 Ga0070702_100134803 3300005615 Bacteria 1565
50 Ga0068859_100000256 3300005617 Bacteria 52870
51 Ga0068859_100001398 3300005617 Bacteria 24478
52 Ga0068859_100014519 3300005617 Bacteria 7909
53 Ga0068864_100001437 3300005618 Bacteria 19648
54 Ga0068864_100012452 3300005618 Bacteria 7033
55 Ga0068861_100000279 3300005719 Bacteria 28775
56 Ga0068861_100000799 3300005719 Bacteria 18980
57 Ga0068861_100004837 3300005719 Bacteria 9057
58 Ga0068863_100000028 3300005841 Bacteria 181662
59 Ga0068863_100005179 3300005841 Bacteria 12862
60 Ga0068858_100047175 3300005842 Bacteria 3994
61 Ga0068860_100005743 3300005843 Bacteria 12515
62 Ga0068860_100041662 3300005843 Bacteria 4386
63 Ga0068862_100000310 3300005844 Bacteria 53315
64 Ga0068862_100108207 3300005844 Bacteria 2438
65 Ga0068862_100190712 3300005844 Bacteria 1844
66 Ga0075368_10000166 3300006042 Bacteria 17785
67 Ga0075367_10000165 3300006178 Bacteria 20961
68 Ga0075431_100145230 3300006847 Bacteria 2445
69 Ga0068865_100164537 3300006881 Bacteria 1695
70 Ga0097620_100000256 3300006931 Bacteria 52870
71 Ga0097620_100001398 3300006931 Bacteria 24478
72 Ga0097620_100014519 3300006931 Bacteria 7909
73 Ga0105251_10023016 3300009011 Bacteria 3223
74 Ga0111539_10267250 3300009094 Bacteria 1991
75 Ga0105247_10000644 3300009101 Bacteria 27956
76 Ga0105248_10182105 3300009177 Bacteria 2367
77 Ga0105248_10232476 3300009177 Bacteria 2075
78 Ga0105249_10035644 3300009553 Bacteria 4512
79 Ga0157369_10506573 3300013105 Bacteria 1249
80 Ga0163162_10041138 3300013306 Bacteria 4623
81 Ga0157380_10010666 3300014326 Bacteria 6617
82 Ga0157380_10012365 3300014326 Bacteria 6192
83 Ga0157380_10012714 3300014326 Bacteria 6113
84 Ga0157379_10081986 3300014968 Bacteria 2890
85 Ga0163161_10009743 3300017792 Bacteria 6657
86 Ga0206354_10580221 3300020081 Bacteria 4717
87 Ga0206353_12045443 3300020082 Bacteria 1296
88 Ga0213874_10063074 3300021377 Bacteria 1165
89 Ga0213876_10187513 3300021384 Bacteria 1100
90 Ga0209147_102314 3300025229 Bacteria 4913
91 Ga0207425_1000049 3300025245 Bacteria 180735
92 Ga0209129_1004041 3300025258 Bacteria 5987
93 Ga0209565_1000007 3300025263 Bacteria 784361
94 Ga0209565_1000170 3300025263 Bacteria 84580
95 Ga0209565_1014885 3300025263 Bacteria 1771
96 Ga0209673_1001919 3300025273 Bacteria 16530
97 Ga0209673_1006861 3300025273 Bacteria 5398
98 Ga0209676_1004023 3300025292 Bacteria 8468
99 Ga0209025_1000068 3300025294 Bacteria 294129
100 Ga0209564_1000733 3300025295 Bacteria 46758
101 Ga0209564_1038097 3300025295 Bacteria 1343
102 Ga0209758_1000017 3300025297 Bacteria 754393
103 Ga0209758_1000019 3300025297 Bacteria 743682
104 Ga0209050_1000001 3300025298 Bacteria 3563507
105 Ga0209050_1000071 3300025298 Bacteria 295478
106 Ga0209050_1000108 3300025298 Bacteria 222534
107 Ga0209050_1014083 3300025298 Bacteria 3480
108 Ga0209256_1000008 3300025299 Bacteria 975723
109 Ga0209051_1000239 3300025303 Bacteria 92575
110 Ga0209257_1000027 3300025304 Bacteria 703541
111 Ga0209257_1001303 3300025304 Bacteria 30370
112 Ga0209257_1001609 3300025304 Bacteria 25860
113 Ga0209257_1003512 3300025304 Bacteria 13341
114 Ga0209257_1011381 3300025304 Bacteria 4294
115 Ga0207697_10000419 3300025315 Bacteria 24002
116 Ga0207697_10008882 3300025315 Bacteria 4369
117 Ga0207682_10003154 3300025893 Bacteria 7222
118 Ga0207710_10000700 3300025900 Bacteria 18794
119 Ga0207680_10000481 3300025903 Bacteria 18900
120 Ga0207681_10000004 3300025923 Bacteria 559005
121 Ga0207681_10003633 3300025923 Bacteria 9591
122 Ga0207681_10135985 3300025923 Bacteria 1824
123 Ga0207650_10002357 3300025925 Bacteria 13129
124 Ga0207650_10003090 3300025925 Bacteria 11462
125 Ga0207650_10049939 3300025925 Bacteria 3091
126 Ga0207650_10068432 3300025925 Bacteria 2666
127 Ga0207659_10002277 3300025926 Bacteria 11433
128 Ga0207644_10000009 3300025931 Bacteria 251643
129 Ga0207706_10001776 3300025933 Bacteria 21179
130 Ga0207691_10024273 3300025940 Bacteria 5702
131 Ga0207711_10126009 3300025941 Bacteria 2291
132 Ga0207679_10102831 3300025945 Bacteria 2238
133 Ga0207668_10000047 3300025972 Bacteria 101453
134 Ga0207668_10001399 3300025972 Bacteria 14213
135 Ga0207668_10062258 3300025972 Bacteria 2627
136 Ga0207668_10299601 3300025972 Bacteria 1326
137 Ga0207640_10008627 3300025981 Bacteria 5665
138 Ga0207658_10000057 3300025986 Bacteria 124003
139 Ga0207658_10002888 3300025986 Bacteria 12319
140 Ga0207703_10304188 3300026035 Bacteria 1455
141 Ga0207639_10057207 3300026041 Bacteria 2993
142 Ga0207641_10000014 3300026088 Bacteria 336170
143 Ga0207641_10016289 3300026088 Bacteria 6087
144 Ga0207648_10072221 3300026089 Bacteria 3008
145 Ga0207676_10000532 3300026095 Bacteria 31972
146 Ga0207674_10161151 3300026116 Bacteria 2197
147 Ga0207675_100000071 3300026118 Bacteria 77575
148 Ga0207675_100000740 3300026118 Bacteria 32427
149 Ga0207675_100003945 3300026118 Bacteria 14400
150 Ga0207683_10008377 3300026121 Bacteria 8843
151 Ga0209813_10000062 3300027866 Bacteria 43852
152 Ga0268265_10001269 3300028380 Bacteria 21775
153 Ga0268265_10008180 3300028380 Bacteria 7066
154 Ga0268265_10160681 3300028380 Bacteria 1908
155 Ga0268264_10000069 3300028381 Bacteria 270492
156 Ga0268264_10004744 3300028381 Bacteria 11545
157 Ga0268264_10055120 3300028381 Bacteria 3322
158 Ga0307517_10013196 3300028786 Bacteria 11251
159 Ga0314311_1248065 3300030733 Bacteria 2323
160 Ga0307408_100006645 3300031548 Bacteria 7667
161 Ga0307405_10029054 3300031731 Bacteria 3227
162 Ga0307405_10031920 3300031731 Bacteria 3106
163 Ga0307405_10051402 3300031731 Bacteria 2557
164 Ga0307413_10018144 3300031824 Bacteria 3684
165 Ga0307413_10181113 3300031824 Bacteria 1502
166 Ga0307410_10007948 3300031852 Bacteria 5848
167 Ga0307410_10010249 3300031852 Bacteria 5297
168 Ga0307410_10114521 3300031852 Bacteria 1956
169 Ga0307410_10116127 3300031852 Bacteria 1944
170 Ga0307410_10314926 3300031852 Bacteria 1239
171 Ga0307406_10009811 3300031901 Bacteria 5388
172 Ga0307406_10298794 3300031901 Bacteria 1236
173 Ga0307407_10081321 3300031903 Bacteria 1960
174 Ga0307407_10091528 3300031903 Bacteria 1865
175 Ga0307412_10000165 3300031911 Bacteria 46841
176 Ga0307412_10000329 3300031911 Bacteria 30093
177 Ga0307412_10013654 3300031911 Bacteria 4771
178 Ga0307412_10058618 3300031911 Bacteria 2576
179 Ga0307412_10257587 3300031911 Bacteria 1358
180 Ga0307409_100030128 3300031995 Bacteria 3894
181 Ga0307409_100062239 3300031995 Bacteria 2921
182 Ga0307416_100055479 3300032002 Bacteria 3191
183 Ga0307416_100064073 3300032002 Bacteria 3013
184 Ga0307416_100263181 3300032002 Bacteria 1687
185 Ga0307414_10000177 3300032004 Bacteria 43274
186 Ga0307414_10001811 3300032004 Bacteria 11052
187 Ga0307414_10026869 3300032004 Bacteria 3710
188 Ga0307414_10039529 3300032004 Bacteria 3178
189 Ga0307414_10091207 3300032004 Bacteria 2264
190 Ga0307414_10242638 3300032004 Bacteria 1492
191 Ga0307411_10002997 3300032005 Bacteria 7690
192 Ga0307411_10007426 3300032005 Bacteria 5584
193 Ga0307411_10092187 3300032005 Bacteria 2118
194 Ga0307411_10117567 3300032005 Bacteria 1916
195 Ga0307411_10155625 3300032005 Bacteria 1705
196 Ga0307415_100066372 3300032126 Bacteria 2518
197 Ga0307415_100096259 3300032126 Bacteria 2157
198 Ga0307415_100223357 3300032126 Bacteria 1511
199 Ga0395899_0060434 3300037312 Bacteria 2792
200 Ga0436364_0007152 3300037853 Bacteria 1728
201 Ga0237819_01727 3300038705 Bacteria 5207
202 Ga0436365_1573510 3300039437 Bacteria 1735
203 Ga0436363_0101797 3300039450 Bacteria 1298
204 Ga0439436_0013523 3300041404 Bacteria 2467
205 Ga0439439_0004538 3300041406 Bacteria 3140
206 Ga0439439_0014734 3300041406 Bacteria 1905
207 Ga0439447_012713 3300041407 Bacteria 2410
208 Ga0439461_0000100 3300041410 Bacteria 11310
209 Ga0439465_0000480 3300041413 Bacteria 11878
210 Ga0451807_2144636 3300041486 Bacteria 2120
211 Ga0439431_0000138 3300041997 Bacteria 13196
212 Ga0439442_001376 3300042002 Bacteria 4815
213 Ga0439445_0001870 3300042004 Bacteria 4634
214 Ga0439432_000224 3300042006 Bacteria 20425
215 Ga0439432_016213 3300042006 Bacteria 2510
216 Ga0439452_009427 3300042010 Bacteria 2875
217 Ga0439457_024242 3300042014 Bacteria 1342
218 Ga0439462_0000289 3300042015 Bacteria 9272
219 Ga0439462_0001552 3300042015 Bacteria 5151
220 Ga0439446_0012995 3300042156 Bacteria 2279
221 Ga0439434_0004303 3300042435 Bacteria 4161
222 Ga0439434_0014786 3300042435 Bacteria 2323
223 Ga0495617_028160 3300046452 Bacteria 1889
224 Ga0495627_000584 3300046453 Bacteria 29144
225 Ga0495627_000871 3300046453 Bacteria 21374
226 Ga0495627_012152 3300046453 Bacteria 3066
227 Ga0495638_0000014 3300046460 Bacteria 417060
228 Ga0495638_0055240 3300046460 Bacteria 2466
229 Ga0495650_0010319 3300046471 Bacteria 5221
230 Ga0495583_0000072 3300046506 Bacteria 182057
231 Ga0495610_0000186 3300046512 Bacteria 69408
232 Ga0495616_0000182 3300046513 Bacteria 53346
233 Ga0495632_0010347 3300046519 Bacteria 5533
234 Ga0495637_0020325 3300046520 Bacteria 3057
235 Ga0495648_0000021 3300046524 Bacteria 246945
236 Ga0495648_0004271 3300046524 Bacteria 12254
237 Ga0495642_0027490 3300046528 Bacteria 2264
238 Ga0495598_0045531 3300046537 Bacteria 1300
239 Ga0495621_0021441 3300046539 Bacteria 2129
240 Ga0495622_0018993 3300046557 Bacteria 3202
241 Ga0495633_0052807 3300046558 Bacteria 1914
242 Ga0495668_0048832 3300046616 Bacteria 2347
243 Ga0495625_0085335 3300046660 Bacteria 2191
244 Ga0495625_0187121 3300046660 Bacteria 1374
245 Ga0495659_0061365 3300046664 Bacteria 1389
246 Ga0495659_0076768 3300046664 Bacteria 1261
247 Ga0495661_0056780 3300046665 Bacteria 2340
248 Ga0495669_0044491 3300046684 Bacteria 1978
249 Ga0495670_0000028 3300046691 Bacteria 90085
250 Ga0495670_0031082 3300046691 Bacteria 2653
251 Ga0495670_0086323 3300046691 Bacteria 1602
252 Ga0495671_0000028 3300046692 Bacteria 234938
253 Ga0495671_0007099 3300046692 Bacteria 6414
254 Ga0495673_0000058 3300047469 Bacteria 235044
255 Ga0495673_0032785 3300047469 Bacteria 2417
256 Ga0495681_0001332 3300047470 Bacteria 18673
257 Ga0495686_0005031 3300047472 Bacteria 10612
258 Ga0496103_0203573 3300048906 Bacteria 1273
259 Ga0496108_0000914 3300048911 Bacteria 22971
260 Ga0496108_0478300 3300048911 Bacteria 1088
261 Ga0496109_0051693 3300048912 Bacteria 3743
262 Ga0496110_0057006 3300048913 Bacteria 3438
263 Ga0496111_0050066 3300048914 Bacteria 3012
264 Ga0496111_0223110 3300048914 Bacteria 1400
265 Ga0496115_0001013 3300048918 Bacteria 20385
266 Ga0496121_0000189 3300048924 Bacteria 137827
267 Ga0496121_0003303 3300048924 Bacteria 23154
268 Ga0496122_0000083 3300048925 Bacteria 208744
269 Ga0496122_0153765 3300048925 Bacteria 1415
270 Ga0496123_0000097 3300048926 Bacteria 173894
271 Ga0496123_0019732 3300048926 Bacteria 5303
272 Ga0496123_0069339 3300048926 Bacteria 2214
273 Ga0496124_0002002 3300048927 Bacteria 27746
274 Ga0496124_0007069 3300048927 Bacteria 12023
275 Ga0496124_0060805 3300048927 Bacteria 3168
276 Ga0496124_0220786 3300048927 Bacteria 1425
277 Ga0496125_0009585 3300048928 Bacteria 9911
278 Ga0496125_0035550 3300048928 Bacteria 4367
279 Ga0496125_0084265 3300048928 Bacteria 2414
280 Ga0496125_0118384 3300048928 Bacteria 1897
281 Ga0496126_0018985 3300048929 Bacteria 6789
282 Ga0496126_0059355 3300048929 Bacteria 3445
283 Ga0496126_0257585 3300048929 Bacteria 1452
284 Ga0501034_0020877 3300049571 Bacteria 6685
285 Ga0501034_0040904 3300049571 Bacteria 4690
286 Ga0501069_0006135 3300049585 Bacteria 6278
287 Ga0501071_0239731 3300049587 Bacteria 1367
288 Ga0501223_006069 3300049663 Bacteria 2513
289 Ga0501224_000001 3300049664 Bacteria 308131
290 Ga0501233_017040 3300049668 Bacteria 1513
291 Ga0501234_000879 3300049707 Bacteria 4738
292 Ga0501241_006842 3300049758 Bacteria 2096
293 Ga0501044_0569736 3300049823 Bacteria 1028
294 Ga0501226_000047 3300049853 Bacteria 54518
295 nmdc:mga06z11_36_c1 3300050494 Bacteria 55905
296 nmdc:mga04h51_475_c1 3300050495 Bacteria 9623
297 nmdc:mga07m45_45165_c1 3300050496 Bacteria 2473
298 nmdc:mga06r32_252318_c1 3300050510 Bacteria 1752
299 nmdc:mga08y16_187000_c1 3300050511 Bacteria 2149
300 Ga0500643_000351 3300053087 Bacteria 36635
301 Ga0500643_001250 3300053087 Bacteria 15061
302 Ga0500643_001549 3300053087 Bacteria 13025
303 Ga0500643_011173 3300053087 Bacteria 3292
304 Ga0500643_017366 3300053087 Bacteria 2411
305 Ga0500566_0080512 3300053094 Bacteria 1813
306 Ga0500556_0000088 3300053104 Bacteria 86055
307 Ga0500594_0001216 3300053118 Bacteria 5568
308 Ga0500595_001051 3300053119 Bacteria 15380
309 Ga0500642_0000001 3300053130 Bacteria 1468402
310 Ga0500658_0001290 3300053134 Bacteria 10162
311 Ga0500658_0063442 3300053134 Bacteria 1542
312 Ga0500559_0007211 3300053136 Bacteria 4944
313 Ga0500559_0070623 3300053136 Bacteria 1571
314 Ga0500568_0022816 3300053139 Bacteria 2669
315 Ga0500604_0004006 3300053151 Bacteria 3933
316 Ga0500622_0049373 3300053156 Bacteria 2170
317 Ga0500624_000930 3300053157 Bacteria 6159
318 Ga0500627_0000774 3300053158 Bacteria 8513
319 Ga0500636_0041655 3300053177 Bacteria 2716
320 Ga0500645_000714 3300053730 Bacteria 20626
321 Ga0500645_002101 3300053730 Bacteria 9202
322 Ga0500645_030671 3300053730 Bacteria 1617
323 Ga0500661_003121 3300055283 Bacteria 3115
324 Ga0590075_035730 3300059424 Bacteria 1266
325 2512643920 2512564014 Bacteria 4639632
326 2600225828 2599185359 Bacteria 4772316
327 2644127775 2643221622 Bacteria 4212502
328 2778126026 2775507255 Bacteria 3945731
329 2809062872 2808606401 Bacteria 4586670
330 2809078836 2808606404 Bacteria 4652788
331 2809085896 2808606405 Bacteria 4586632
332 2819716369 2818991466 Bacteria 4748179
333 2879165322 2879163058 Bacteria 4223965
334 2880520151 2880518877 Bacteria 5012590
335 2885428659 2885427238 Bacteria 2291351
336 2896429864 2896429255 Bacteria 2557483
337 2919710481 2919709256 Bacteria 4318106
338 2928028487 2928027323 Bacteria 4382488
339 2928528824 2928526807 Bacteria 4760224
340 2928970377 2928968154 Bacteria 4633371
341 2990265888 2990265787 Bacteria 3943888
342 2993696321 2993693658 Bacteria 4040749
343 Ga0075370_10043426
344 ARcpr5oldR_c002840
345 JGI24751J29686_10008397
346 JGI25150J39212_1000711
347 JGI25153J46596_10000008
348 JGI25153J46596_10000186
349 rootL2_10054065
350 rootL2_10065594
351 Ga0055537_1005121
352 Ga0055524_1000154
353 Ga0055536_1012993
354 Ga0055530_10000235
355 Ga0055530_10015196
356 Ga0055540_1003423
357 Ga0055540_1006395
358 Ga0055531_10000361
359 Ga0055531_10002285
360 Ga0065165_1002195
361 Ga0065165_1004795
362 Ga0065165_1005295
363 Ga0070670_100000964
364 Ga0070670_100001075
365 Ga0070670_100003439
366 Ga0070677_10000705
367 Ga0070666_10000089
368 Ga0070666_10134075
369 Ga0070668_100035049
370 Ga0070669_100000024
371 Ga0070669_100003409
372 Ga0070669_100018244
373 Ga0070669_100118539
374 Ga0070669_100203759
375 Ga0070671_100000006
376 Ga0070671_100031481
377 Ga0070674_100010543
378 Ga0070673_100034866
379 Ga0070667_100000051
380 Ga0070667_100137672
381 Ga0070705_100050586
382 Ga0070708_100039593
383 Ga0070678_100006580
384 Ga0068867_100064156
385 Ga0068853_100005871
386 Ga0070672_100005676
387 Ga0070665_100095368
388 Ga0070664_100061185
389 Ga0068857_100041131
390 Ga0068857_100142369
391 Ga0070702_100134803
392 Ga0068859_100000256
393 Ga0068859_100001398
394 Ga0068859_100014519
395 Ga0068864_100001437
396 Ga0068864_100012452
397 Ga0068861_100000279
398 Ga0068861_100000799
399 Ga0068861_100004837
400 Ga0068863_100000028
401 Ga0068863_100005179
402 Ga0068858_100047175
403 Ga0068860_100005743
404 Ga0068860_100041662
405 Ga0068862_100000310
406 Ga0068862_100108207
407 Ga0068862_100190712
408 Ga0075368_10000166
409 Ga0075367_10000165
410 Ga0075431_100145230
411 Ga0068865_100164537
412 Ga0097620_100000256
413 Ga0097620_100001398
414 Ga0097620_100014519
415 Ga0105251_10023016
416 Ga0111539_10267250
417 Ga0105247_10000644
418 Ga0105248_10182105
419 Ga0105248_10232476
420 Ga0105249_10035644
421 Ga0157369_10506573
422 Ga0163162_10041138
423 Ga0157380_10010666
424 Ga0157380_10012365
425 Ga0157380_10012714
426 Ga0157379_10081986
427 Ga0163161_10009743
428 Ga0206354_10580221
429 Ga0206353_12045443
430 Ga0213874_10063074
431 Ga0213876_10187513
432 Ga0209147_102314
433 Ga0207425_1000049
434 Ga0209129_1004041
435 Ga0209565_1000007
436 Ga0209565_1000170
437 Ga0209565_1014885
438 Ga0209673_1001919
439 Ga0209673_1006861
440 Ga0209676_1004023
441 Ga0209025_1000068
442 Ga0209564_1000733
443 Ga0209564_1038097
444 Ga0209758_1000017
445 Ga0209758_1000019
446 Ga0209050_1000001
447 Ga0209050_1000071
448 Ga0209050_1000108
449 Ga0209050_1014083
450 Ga0209256_1000008
451 Ga0209051_1000239
452 Ga0209257_1000027
453 Ga0209257_1001303
454 Ga0209257_1001609
455 Ga0209257_1003512
456 Ga0209257_1011381
457 Ga0207697_10000419
458 Ga0207697_10008882
459 Ga0207682_10003154
460 Ga0207710_10000700
461 Ga0207680_10000481
462 Ga0207681_10000004
463 Ga0207681_10003633
464 Ga0207681_10135985
465 Ga0207650_10002357
466 Ga0207650_10003090
467 Ga0207650_10049939
468 Ga0207650_10068432
469 Ga0207659_10002277
470 Ga0207644_10000009
471 Ga0207706_10001776
472 Ga0207691_10024273
473 Ga0207711_10126009
474 Ga0207679_10102831
475 Ga0207668_10000047
476 Ga0207668_10001399
477 Ga0207668_10062258
478 Ga0207668_10299601
479 Ga0207640_10008627
480 Ga0207658_10000057
481 Ga0207658_10002888
482 Ga0207703_10304188
483 Ga0207639_10057207
484 Ga0207641_10000014
485 Ga0207641_10016289
486 Ga0207648_10072221
487 Ga0207676_10000532
488 Ga0207674_10161151
489 Ga0207675_100000071
490 Ga0207675_100000740
491 Ga0207675_100003945
492 Ga0207683_10008377
493 Ga0209813_10000062
494 Ga0268265_10001269
495 Ga0268265_10008180
496 Ga0268265_10160681
497 Ga0268264_10000069
498 Ga0268264_10004744
499 Ga0268264_10055120
500 Ga0307517_10013196
501 Ga0314311_1248065
502 Ga0307408_100006645
503 Ga0307405_10029054
504 Ga0307405_10031920
505 Ga0307405_10051402
506 Ga0307413_10018144
507 Ga0307413_10181113
508 Ga0307410_10007948
509 Ga0307410_10010249
510 Ga0307410_10114521
511 Ga0307410_10116127
512 Ga0307410_10314926
513 Ga0307406_10009811
514 Ga0307406_10298794
515 Ga0307407_10081321
516 Ga0307407_10091528
517 Ga0307412_10000165
518 Ga0307412_10000329
519 Ga0307412_10013654
520 Ga0307412_10058618
521 Ga0307412_10257587
522 Ga0307409_100030128
523 Ga0307409_100062239
524 Ga0307416_100055479
525 Ga0307416_100064073
526 Ga0307416_100263181
527 Ga0307414_10000177
528 Ga0307414_10001811
529 Ga0307414_10026869
530 Ga0307414_10039529
531 Ga0307414_10091207
532 Ga0307414_10242638
533 Ga0307411_10002997
534 Ga0307411_10007426
535 Ga0307411_10092187
536 Ga0307411_10117567
537 Ga0307411_10155625
538 Ga0307415_100066372
539 Ga0307415_100096259
540 Ga0307415_100223357
541 Ga0395899_0060434
542 Ga0436364_0007152
543 Ga0237819_01727
544 Ga0436365_1573510
545 Ga0436363_0101797
546 Ga0439436_0013523
547 Ga0439439_0004538
548 Ga0439439_0014734
549 Ga0439447_012713
550 Ga0439461_0000100
551 Ga0439465_0000480
552 Ga0451807_2144636
553 Ga0439431_0000138
554 Ga0439442_001376
555 Ga0439445_0001870
556 Ga0439432_000224
557 Ga0439432_016213
558 Ga0439452_009427
559 Ga0439457_024242
560 Ga0439462_0000289
561 Ga0439462_0001552
562 Ga0439446_0012995
563 Ga0439434_0004303
564 Ga0439434_0014786
565 Ga0495617_028160
566 Ga0495627_000584
567 Ga0495627_000871
568 Ga0495627_012152
569 Ga0495638_0000014
570 Ga0495638_0055240
571 Ga0495650_0010319
572 Ga0495583_0000072
573 Ga0495610_0000186
574 Ga0495616_0000182
575 Ga0495632_0010347
576 Ga0495637_0020325
577 Ga0495648_0000021
578 Ga0495648_0004271
579 Ga0495642_0027490
580 Ga0495598_0045531
581 Ga0495621_0021441
582 Ga0495622_0018993
583 Ga0495633_0052807
584 Ga0495668_0048832
585 Ga0495625_0085335
586 Ga0495625_0187121
587 Ga0495659_0061365
588 Ga0495659_0076768
589 Ga0495661_0056780
590 Ga0495669_0044491
591 Ga0495670_0000028
592 Ga0495670_0031082
593 Ga0495670_0086323
594 Ga0495671_0000028
595 Ga0495671_0007099
596 Ga0495673_0000058
597 Ga0495673_0032785
598 Ga0495681_0001332
599 Ga0495686_0005031
600 Ga0496103_0203573
601 Ga0496108_0000914
602 Ga0496108_0478300
603 Ga0496109_0051693
604 Ga0496110_0057006
605 Ga0496111_0050066
606 Ga0496111_0223110
607 Ga0496115_0001013
608 Ga0496121_0000189
609 Ga0496121_0003303
610 Ga0496122_0000083
611 Ga0496122_0153765
612 Ga0496123_0000097
613 Ga0496123_0019732
614 Ga0496123_0069339
615 Ga0496124_0002002
616 Ga0496124_0007069
617 Ga0496124_0060805
618 Ga0496124_0220786
619 Ga0496125_0009585
620 Ga0496125_0035550
621 Ga0496125_0084265
622 Ga0496125_0118384
623 Ga0496126_0018985
624 Ga0496126_0059355
625 Ga0496126_0257585
626 Ga0501034_0020877
627 Ga0501034_0040904
628 Ga0501069_0006135
629 Ga0501071_0239731
630 Ga0501223_006069
631 Ga0501224_000001
632 Ga0501233_017040
633 Ga0501234_000879
634 Ga0501241_006842
635 Ga0501044_0569736
636 Ga0501226_000047
637 nmdc:mga06z11_36_c1
638 nmdc:mga04h51_475_c1
639 nmdc:mga07m45_45165_c1
640 nmdc:mga06r32_252318_c1
641 nmdc:mga08y16_187000_c1
642 Ga0500643_000351
643 Ga0500643_001250
644 Ga0500643_001549
645 Ga0500643_011173
646 Ga0500643_017366
647 Ga0500566_0080512
648 Ga0500556_0000088
649 Ga0500594_0001216
650 Ga0500595_001051
651 Ga0500642_0000001
652 Ga0500658_0001290
653 Ga0500658_0063442
654 Ga0500559_0007211
655 Ga0500559_0070623
656 Ga0500568_0022816
657 Ga0500604_0004006
658 Ga0500622_0049373
659 Ga0500624_000930
660 Ga0500627_0000774
661 Ga0500636_0041655
662 Ga0500645_000714
663 Ga0500645_002101
664 Ga0500645_030671
665 Ga0500661_003121
666 Ga0590075_035730
667 2512643920
668 2600225828
669 2644127775
670 2778126026
671 2809062872
672 2809078836
673 2809085896
674 2819716369
675 2879165322
676 2880520151
677 2885428659
678 2896429864
679 2919710481
680 2928028487
681 2928528824
682 2928970377
683 2990265888
684 2993696321

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF00348

polyprenyl_synt

Polyprenyl synthetase

53

309

0.91

Structural Annotation

Top 5 Hits

ID Description Score Start End
4kkm-assembly1.cif.gz_A crystal structure of a fpp/gfpp synthase (target efi-501952) from zymomonas mobilis, apo structure 0.9818 6 293
4kkm-assembly1.cif.gz_B crystal structure of a fpp/gfpp synthase (target efi-501952) from zymomonas mobilis, apo structure 0.9805 5 294
4kkm-assembly1.cif.gz_B crystal structure of a fpp/gfpp synthase (target efi-501952) from zymomonas mobilis, apo structure 0.9701 5 294
4llt-assembly1.cif.gz_B crystal structure of a farnesyl diphosphate synthase from roseobacter denitrificans och 114, target efi-509393, with two ipp and calcium bound in active site 0.9653 7 299
7lbj-assembly1.cif.gz_B crystal structure of octaprenyl diphosphate synthase from stenotrophomonas maltophilia 0.965 6 299
ID Description Score Start End Superfamily
4kkmB00 Mainly Alpha;Orthogonal Bundle;Farnesyl Diphosphate Synthase;Farnesyl Diphosphate Synthase 0.9805 5 294 1.10.600.10
4kkmB00 Mainly Alpha;Orthogonal Bundle;Farnesyl Diphosphate Synthase;Farnesyl Diphosphate Synthase 0.9701 5 294 1.10.600.10
3zcdA00 Mainly Alpha;Orthogonal Bundle;Farnesyl Diphosphate Synthase;Farnesyl Diphosphate Synthase 0.947 8 297 1.10.600.10
3ucaB00 Mainly Alpha;Orthogonal Bundle;Farnesyl Diphosphate Synthase;Farnesyl Diphosphate Synthase 0.9452 12 299 1.10.600.10
2h8oA00 Mainly Alpha;Orthogonal Bundle;Farnesyl Diphosphate Synthase;Farnesyl Diphosphate Synthase 0.9401 7 295 1.10.600.10
ID Description Score Start End GO Terms
AF-A0A4Q2ITG7-F1-model_v4 Polyprenyl synthetase family protein 0.9974 4 299 GO:0004659
GO:0005737
GO:0008299
AF-A0A7X1KKY8-F1-model_v4 Polyprenyl synthetase family protein 0.9958 5 299 GO:0004659
GO:0005737
GO:0008299
AF-A0A840F7R2-F1-model_v4 Farnesyl diphosphate synthase (EC 2.5.1.1, EC 2.5.1.10) 0.9948 3 299 GO:0004659
GO:0005737
GO:0008299
AF-A0A520I5E3-F1-model_v4 Polyprenyl synthetase family protein 0.9937 9 146 GO:0004659
GO:0008299
AF-A0A7V8KNK5-F1-model_v4 deleted 0.9932 61 299

Map