F415380

General Info

Members Datasets Scaffolds Average Seq Length
342 197 684 486

Family's Representative Sequence

Representative Sequence iso_pu_bacteria|2919085039|2919086769
Length 550
Sequence RVWAGPEYTRVVFDLSGPATYKMSQGDTPGSVVLDIAGSSVTGDFSAPGAQGLFKSMTTGRQGGGARLVASVDARAKPKSFLLKPAGDYGYRLVLDLYPGGQSDPGDNSPTDNDMPAIAKAAAQADAEAAADTPTVAPSGGKRGRAGKTAKTISAGSPPMLTGERKVVVAIDAGHGGEDPGARGATGLREKDVTLQVARELADQINRQPGMQAVLTRNGDYFIPLKRRYQIAREHNADMFVSIHADAFKNGDAKGSSVWVLSPRGKTSEASRWLADRENRADLVGGVSLDDKDDSLAAVLLDLQQGYAMQASESIAGNVLKALGRLGPTHRGYVERANFVVLRSPDVPSILVETAFITNPTEEKRLRDDGHRRELATAVLGGVRNYFESMPPPGTWFAAQAARRNGTSLASTAASAPAAPAVASDAGAVASDAVKAATTRVVASREPVAKAPASRAPTPASRPEPAPLKGGAKRPPSDAIVVQTVDAPPKPAAPAGRADDNVRDLHRVNRGETLTGIAQQYGVSVGALKSANKMNDNNVRIGSVMVIPSS

Samples

Sample ID Description Type Environment
1 3300001904 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2 Metagenome Rhizosphere
2 3300001979 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6 Metagenome Rhizosphere
3 3300001989 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5 Metagenome Rhizosphere
4 3300001990 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3 Metagenome Rhizosphere
5 3300002067 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C1 Metagenome Rhizosphere
6 3300002075 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4 Metagenome Rhizosphere
7 3300002737 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mTSA Metagenome Endosphere
8 3300002741 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mCL Metagenome Unclassified
9 3300002771 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mLB Metagenome Endosphere
10 3300002772 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mMS Metagenome Endosphere
11 3300003214 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mCL Metagenome Endosphere
12 3300003320 Sugarcane root Sample H2 Metagenome Unclassified
13 3300003322 Sugarcane root Sample L2 Metagenome Unclassified
14 3300003578 Arabidopsis root microbial communities from the University of North Carolina, USA - metaT NBMF1_36_input_d2 (Metagenome Metatranscriptome, Counting Only) Metatranscriptome Unclassified
15 3300003751 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mLB_r2 Metagenome Endosphere
16 3300003756 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mMS_r2 Metagenome Endosphere
17 3300003761 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mTSA_r2 Metagenome Endosphere
18 3300003762 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mMF_r2 Metagenome Endosphere
19 3300003763 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mCL_r2 Metagenome Endosphere
20 3300005262 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMF (version 2) (version 3) Metagenome Endosphere
21 3300005327 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG Metagenome Rhizosphere
22 3300005331 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG Metagenome Rhizosphere
23 3300005335 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG Metagenome Rhizosphere
24 3300005336 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG Metagenome Rhizosphere
25 3300005337 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3L metaG Metagenome Rhizosphere
26 3300005339 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG Metagenome Rhizosphere
27 3300005344 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG Metagenome Rhizosphere
28 3300005347 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG Metagenome Rhizosphere
29 3300005366 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG Metagenome Rhizosphere
30 3300005435 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG Metagenome Rhizosphere
31 3300005436 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG Metagenome Rhizosphere
32 3300005444 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-1 metaG Metagenome Rhizosphere
33 3300005455 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG Metagenome Rhizosphere
34 3300005458 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG Metagenome Rhizosphere
35 3300005466 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3L metaG Metagenome Rhizosphere
36 3300005530 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG Metagenome Rhizosphere
37 3300005539 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 Metagenome Rhizosphere
38 3300005546 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-3 metaG Metagenome Rhizosphere
39 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
40 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
41 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
42 3300005616 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 Metagenome Rhizosphere
43 3300005834 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C1-2 Metagenome Rhizosphere
44 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
45 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
46 3300009101 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG Metagenome Rhizosphere
47 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
48 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
49 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
50 3300013100 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6-5 metaG Metagenome Rhizosphere
51 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
52 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
53 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
54 3300014497 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-129_1 metaG Metagenome Rhizosphere
55 3300014969 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG Metagenome Rhizosphere
56 3300015261 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-104_1 MetaG Metagenome Rhizosphere
57 3300015262 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-113_1 MetaG Metagenome Rhizosphere
58 3300015265 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-103_1 MetaG Metagenome Rhizosphere
59 3300015685 Plant tissue microbial consortia from sugarcane, Campinas, Sao Paulo, Brazil - 002.5_G12 Metagenome Unclassified
60 3300015687 Rizhosphere microbial communities from mature sugarcane plants Campinas, Sao Paulo, Brazil - 002.1_G08 Metagenome Rhizosphere
61 3300017792 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG Metagenome Rhizosphere
62 3300025207 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mLB (SPAdes) (version 2) Metagenome Endosphere
63 3300025224 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mLB_r2 (SPAdes) (version 2) Metagenome Endosphere
64 3300025225 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mTSA_r2 (SPAdes) (version 2) Metagenome Endosphere
65 3300025226 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mMS_r2 (SPAdes) (version 2) Metagenome Endosphere
66 3300025228 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mMS_r2 (SPAdes) (version 2) Metagenome Endosphere
67 3300025231 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mMS (SPAdes) (version 2) Metagenome Endosphere
68 3300025233 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mTSA (SPAdes) (version 2) Metagenome Endosphere
69 3300025242 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mTSA_r2 (SPAdes) (version 2) Metagenome Endosphere
70 3300025246 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mTSA (SPAdes) (version 2) Metagenome Unclassified
71 3300025250 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mCL (SPAdes) (version 2) Metagenome Unclassified
72 3300025254 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mMF_r2 (SPAdes) (version 2) Metagenome Endosphere
73 3300025256 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mMS (SPAdes) (version 2) Metagenome Unclassified
74 3300025258 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMS (SPAdes) (version 3) Metagenome Endosphere
75 3300025261 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mCL (SPAdes) (version 2) Metagenome Endosphere
76 3300025272 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
77 3300025302 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMS (SPAdes) (version 2) Metagenome Endosphere
78 3300025903 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
79 3300025904 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2 (SPAdes) (version 2) Metagenome Rhizosphere
80 3300025909 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
81 3300025912 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
82 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
83 3300025914 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
84 3300025915 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
85 3300025917 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
86 3300025919 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
87 3300025921 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
88 3300025924 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
89 3300025929 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
90 3300025932 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
91 3300025933 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
92 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
93 3300025972 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
94 3300025981 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 (SPAdes) (version 2) Metagenome Rhizosphere
95 3300026041 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes) (version 2) Metagenome Rhizosphere
96 3300026067 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
97 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
98 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
99 3300026142 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes) (version 2) Metagenome Rhizosphere
100 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
101 3300028381 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) Metagenome Rhizosphere
102 3300031911 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1 Metagenome Rhizosphere
103 3300033180 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 12_EM Metagenome Unclassified
104 3300036712 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S_170502SBrCrA Metagenome Rhizosphere
105 3300037312 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_B SG_2 Metagenome Rhizosphere
106 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
107 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
108 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
109 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
110 3300041404 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0216DE14Z070717_5272 Metagenome Rhizosphere
111 3300041486 Perennial ryegrass root microbial community from Lincoln, Canterbury, New Zealand - RGR18_9 MetaG Metagenome Rhizoplane
112 3300042184 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0627D_E14_080116_2630 Metagenome Rhizosphere
113 3300042438 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0311FE14Z081617_5533 Metagenome Rhizosphere
114 3300044658 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC1R Metagenome Rhizosphere
115 3300044672 Roots microbial communities from millet plant in semiarid region near Thies, Senegal - COA3E Metagenome Unclassified
116 3300044684 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC4R Metagenome Rhizosphere
117 3300044706 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA3R Metagenome Rhizosphere
118 3300045836 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC4R Metagenome Rhizosphere
119 3300046452 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-351-Co3_11_46 rhizosphere Metagenome Rhizosphere
120 3300046460 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co3_31_37 rhizosphere Metagenome Rhizosphere
121 3300046471 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co3_9_34 rhizosphere Metagenome Rhizosphere
122 3300046492 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co3_21_57 rhizosphere Metagenome Rhizosphere
123 3300046501 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co3_27_41 rhizosphere Metagenome Rhizosphere
124 3300046507 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co2_62_14 rhizosphere Metagenome Rhizosphere
125 3300046512 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co2_50_17 rhizosphere Metagenome Rhizosphere
126 3300046513 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-351-Co2_42_17 rhizosphere Metagenome Rhizosphere
127 3300046515 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co2_62_25 rhizosphere Metagenome Rhizosphere
128 3300046518 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co1_22_4 rhizosphere Metagenome Rhizosphere
129 3300046519 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co2_51_16 rhizosphere Metagenome Rhizosphere
130 3300046524 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co1_12_9 rhizosphere Metagenome Rhizosphere
131 3300046538 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co1_12_7 rhizosphere Metagenome Rhizosphere
132 3300046616 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co1_14_4 rhizosphere Metagenome Rhizosphere
133 3300046648 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co3_15_40 rhizosphere Metagenome Rhizosphere
134 3300046660 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co1_32_7 rhizosphere Metagenome Rhizosphere
135 3300046665 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co3_16_51 rhizosphere Metagenome Rhizosphere
136 3300046692 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co1_37_5 rhizosphere Metagenome Rhizosphere
137 3300046794 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-133-Co1_27_3 rhizosphere Metagenome Rhizosphere
138 3300046810 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co2_51_17 rhizosphere Metagenome Rhizosphere
139 3300047323 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWA-24-3-Co3_23_35 rhizosphere Metagenome Rhizosphere
140 3300047446 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co3_35_48 rhizosphere Metagenome Rhizosphere
141 3300047469 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co3_31_39 rhizosphere Metagenome Rhizosphere
142 3300047472 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co2_54_22 rhizosphere Metagenome Rhizosphere
143 3300048904 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7w unlabeled Metagenome Rhizoplane
144 3300048908 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2d N15 Metagenome Rhizoplane
145 3300048909 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3c N15 Metagenome Rhizoplane
146 3300048910 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3d N15 Metagenome Rhizoplane
147 3300048918 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6d N15 Metagenome Rhizoplane
148 3300048920 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1e N15 Metagenome Unclassified
149 3300048921 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1f N15 Metagenome Unclassified
150 3300048922 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2e N15 Metagenome Unclassified
151 3300048923 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2f N15 Metagenome Unclassified
152 3300048924 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_3e N15 Metagenome Unclassified
153 3300048925 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8x unlabeled Metagenome Unclassified
154 3300048927 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_4e N15 Metagenome Unclassified
155 3300048928 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_5e N15 Metagenome Unclassified
156 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
157 3300049459 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co2_62_24 rhizosphere Metagenome Rhizosphere
158 3300049460 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWA-24-3-Co2_41_10 rhizosphere Metagenome Rhizosphere
159 3300049570 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_03 Metagenome Rhizosphere
160 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
161 3300049572 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 Metagenome Rhizosphere
162 3300049573 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_01 Metagenome Rhizosphere
163 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
164 3300049579 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 Metagenome Rhizosphere
165 3300049580 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_01 Metagenome Rhizosphere
166 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
167 3300049585 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_03 Metagenome Rhizosphere
168 3300049586 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 Metagenome Rhizosphere
169 3300049593 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_02 Metagenome Rhizosphere
170 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
171 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
172 3300053087 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co3_14_51 endosphere Metagenome Endosphere
173 3300053730 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co2_68_28 endosphere Metagenome Endosphere
174 2919085039 Luteibacter sp. 1214 Isolate Unclassified
175 2537561836 Rhodanobacter spathiphylli B39 Isolate Unclassified
176 2593339238 Luteibacter sp. UNCMF366Tsu5.1 Isolate Unclassified
177 2593339239 Luteibacter sp. UNCMF331Sha3.1 Isolate Unclassified
178 2643221562 Rhodanobacter sp. Root561 Isolate Unclassified
179 2643221577 Rhodanobacter sp. Root627 Isolate Unclassified
180 2643221685 Rhodanobacter sp. Root480 Isolate Unclassified
181 2687453130 Dyella thiooxydans ATSB10 Isolate Unclassified
182 2718218334 Luteibacter rhizovicinus LJ96 Isolate Rhizosphere
183 2734482264 Dyella sp. AD052 Isolate Unclassified
184 2738543009 Luteibacter sp. OK325 Isolate Unclassified
185 2739367700 Dyella sp. YR388 Isolate Unclassified
186 2818991440 Luteibacter yeojuensis 583 Isolate Unclassified
187 2842914999 Luteibacter sp. R-72151 Isolate Unclassified
188 2842918807 Luteibacter sp. R-73110 Isolate Unclassified
189 2884338543 Luteibacter pinisoli MAH-14 Isolate Rhizosphere
190 2884411467 Dyella sp. AD56 Isolate Rhizosphere
191 2895395659 Rhodanobacter sp. T12-5 Isolate Unclassified
192 2904463128 Luteibacter yeojuensis 3191 Isolate Unclassified
193 2919404418 Luteibacter sp. 3190 Isolate Unclassified
194 2928963466 Dyella japonica 1073 Isolate Unclassified
195 2939611941 Rhodanobacter soli 1757 Isolate Rhizosphere
196 2941471342 Luteibacter sp. 621 Isolate Unclassified
197 2953994433 Luteibacter sp. W1I16 Isolate Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 92.69
Metatranscriptomes 0.29
Isolates 7.02

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 14.62
Nodule 0
Rhizoplane 2.63
Rhizosphere 64.04
Stem 0
Stem Tuber 0
Unclassified 0

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 JGI24736J21556_1004255 3300001904 Bacteria 2454
2 JGI24740J21852_10012224 3300001979 Bacteria 3242
3 JGI24739J22299_10000301 3300001989 Bacteria 16793
4 JGI24737J22298_10001317 3300001990 Bacteria 8801
5 JGI24735J21928_10002905 3300002067 Bacteria 5900
6 JGI24738J21930_10005273 3300002075 Bacteria 3116
7 JGI25162J39368_1000226 3300002737 Bacteria 57732
8 JGI25162J39368_1000790 3300002737 Bacteria 21152
9 JGI25162J39368_1001503 3300002737 Bacteria 12152
10 JGI25162J39368_1002065 3300002737 Bacteria 8695
11 JGI25157J39369_1000345 3300002741 Bacteria 32775
12 JGI25157J39369_1000541 3300002741 Bacteria 22715
13 JGI25157J39369_1002029 3300002741 Bacteria 5830
14 JGI25163J39215_1000171 3300002771 Bacteria 25502
15 JGI25164J39214_1000214 3300002772 Bacteria 47762
16 JGI25164J39214_1000742 3300002772 Bacteria 12152
17 JGI25164J39214_1000752 3300002772 Bacteria 12009
18 JGI25165J46597_1000260 3300003214 Bacteria 70453
19 JGI25165J46597_1001473 3300003214 Bacteria 12149
20 JGI25165J46597_1002269 3300003214 Bacteria 6616
21 rootH2_10004402 3300003320 Bacteria 19303
22 rootH2_10146621 3300003320 Bacteria 2571
23 rootL2_10131042 3300003322 Bacteria 3650
24 Ga0006562J51391_1144215 3300003578 Bacteria 4276
25 Ga0055538_1001282 3300003751 Bacteria 5118
26 Ga0055533_1000711 3300003756 Bacteria 10825
27 Ga0055535_1000323 3300003761 Bacteria 48370
28 Ga0055542_1000067 3300003762 Bacteria 154585
29 Ga0055542_1000275 3300003762 Bacteria 57732
30 Ga0055529_1000233 3300003763 Bacteria 70453
31 Ga0065165_1000598 3300005262 Bacteria 52772
32 Ga0065165_1001244 3300005262 Bacteria 29035
33 Ga0070658_10001605 3300005327 Bacteria 19114
34 Ga0070670_100113281 3300005331 Bacteria 2338
35 Ga0070666_10000012 3300005335 Bacteria 244720
36 Ga0070680_100039792 3300005336 Bacteria 3804
37 Ga0070680_100086146 3300005336 Bacteria 2597
38 Ga0070682_100014826 3300005337 Bacteria 4510
39 Ga0070682_100041432 3300005337 Bacteria 2838
40 Ga0070660_100007972 3300005339 Bacteria 7400
41 Ga0070661_100004476 3300005344 Bacteria 9637
42 Ga0070668_100056565 3300005347 Bacteria 3030
43 Ga0070659_100003931 3300005366 Bacteria 10575
44 Ga0070714_100000650 3300005435 Bacteria 24670
45 Ga0070714_100035162 3300005435 Bacteria 4197
46 Ga0070713_100000697 3300005436 Bacteria 21613
47 Ga0070694_100043807 3300005444 Bacteria 2994
48 Ga0070663_100047970 3300005455 Bacteria 3027
49 Ga0070681_10000422 3300005458 Bacteria 34427
50 Ga0070681_10005861 3300005458 Bacteria 11895
51 Ga0070681_10172824 3300005458 Bacteria 2082
52 Ga0070685_10003620 3300005466 Bacteria 7842
53 Ga0070679_100046339 3300005530 Bacteria 4333
54 Ga0068853_100018135 3300005539 Bacteria 5821
55 Ga0070696_100004496 3300005546 Bacteria 9313
56 Ga0070696_100018008 3300005546 Bacteria 4771
57 Ga0070665_100005731 3300005548 Bacteria 12753
58 Ga0068855_100047136 3300005563 Bacteria 5092
59 Ga0068856_100000652 3300005614 Bacteria 37607
60 Ga0068856_100041438 3300005614 Bacteria 4525
61 Ga0068852_100006671 3300005616 Bacteria 8367
62 Ga0068851_10001144 3300005834 Bacteria 11493
63 Ga0068860_100201207 3300005843 Bacteria 1930
64 Ga0105240_10003480 3300009093 Bacteria 24428
65 Ga0105247_10006226 3300009101 Bacteria 7402
66 Ga0105237_10000007 3300009545 Bacteria 367690
67 Ga0105237_10033095 3300009545 Bacteria 5236
68 Ga0105238_10003195 3300009551 Bacteria 16356
69 Ga0105238_10009652 3300009551 Bacteria 9660
70 Ga0105238_10028781 3300009551 Bacteria 5658
71 Ga0105239_10000020 3300010375 Bacteria 264435
72 Ga0105239_10012353 3300010375 Bacteria 9511
73 Ga0105239_10070807 3300010375 Bacteria 3831
74 Ga0157373_10004922 3300013100 Bacteria 10056
75 Ga0157370_10000422 3300013104 Bacteria 53330
76 Ga0157370_10002917 3300013104 Bacteria 20365
77 Ga0157370_10006899 3300013104 Bacteria 12425
78 Ga0157370_10013489 3300013104 Bacteria 8415
79 Ga0157370_10027335 3300013104 Bacteria 5626
80 Ga0157369_10008218 3300013105 Bacteria 11965
81 Ga0157369_10018954 3300013105 Bacteria 7708
82 Ga0157369_10027269 3300013105 Bacteria 6334
83 Ga0157372_10021129 3300013307 Bacteria 7030
84 Ga0182008_10001234 3300014497 Bacteria 17552
85 Ga0182008_10010280 3300014497 Bacteria 5012
86 Ga0157376_10145121 3300014969 Bacteria 2134
87 Ga0182006_1000475 3300015261 Bacteria 31392
88 Ga0182006_1000544 3300015261 Bacteria 28489
89 Ga0182006_1016011 3300015261 Bacteria 3203
90 Ga0182007_10003607 3300015262 Bacteria 7261
91 Ga0182007_10016867 3300015262 Bacteria 2683
92 Ga0182007_10025605 3300015262 Bacteria 2053
93 Ga0182005_1000261 3300015265 Bacteria 33393
94 Ga0182005_1000513 3300015265 Bacteria 19831
95 Ga0182005_1004225 3300015265 Bacteria 4688
96 Ga0183369_1006 3300015685 Bacteria 449058
97 Ga0183368_1003 3300015687 Bacteria 1276390
98 Ga0163161_10002263 3300017792 Bacteria 13801
99 Ga0163161_10083960 3300017792 Bacteria 2348
100 Ga0209760_100210 3300025207 Bacteria 26868
101 Ga0209784_100068 3300025224 Bacteria 152526
102 Ga0209566_101916 3300025225 Bacteria 4576
103 Ga0209674_100012 3300025226 Bacteria 950162
104 Ga0209674_101988 3300025226 Bacteria 4747
105 Ga0209672_100963 3300025228 Bacteria 12793
106 Ga0207427_100156 3300025231 Bacteria 77311
107 Ga0207427_100312 3300025231 Bacteria 33663
108 Ga0207427_100334 3300025231 Bacteria 31251
109 Ga0209437_100126 3300025233 Bacteria 192521
110 Ga0209437_100139 3300025233 Bacteria 172506
111 Ga0209437_100147 3300025233 Bacteria 161997
112 Ga0209437_100154 3300025233 Bacteria 153383
113 Ga0209437_101062 3300025233 Bacteria 8991
114 Ga0209258_100049 3300025242 Bacteria 358328
115 Ga0209258_101576 3300025242 Bacteria 7587
116 Ga0209646_1000517 3300025246 Bacteria 17280
117 Ga0209026_1000099 3300025250 Bacteria 161750
118 Ga0209026_1000405 3300025250 Bacteria 38212
119 Ga0209026_1000914 3300025250 Bacteria 15138
120 Ga0209148_1000002 3300025254 Bacteria 2399500
121 Ga0209148_1000010 3300025254 Bacteria 1265567
122 Ga0209148_1001677 3300025254 Bacteria 9931
123 Ga0209759_1000316 3300025256 Bacteria 64846
124 Ga0209759_1003052 3300025256 Bacteria 6895
125 Ga0209759_1007463 3300025256 Bacteria 3513
126 Ga0209759_1011421 3300025256 Bacteria 2526
127 Ga0209129_1005997 3300025258 Bacteria 4080
128 Ga0209129_1006817 3300025258 Bacteria 3575
129 Ga0209233_1000009 3300025261 Bacteria 1265567
130 Ga0209233_1000083 3300025261 Bacteria 336016
131 Ga0209233_1000092 3300025261 Bacteria 308668
132 Ga0209233_1000191 3300025261 Bacteria 127938
133 Ga0209455_1000086 3300025272 Bacteria 244650
134 Ga0209455_1000357 3300025272 Bacteria 42718
135 Ga0209455_1005656 3300025272 Bacteria 3821
136 Ga0207426_1015579 3300025302 Bacteria 2754
137 Ga0207680_10000013 3300025903 Bacteria 244716
138 Ga0207647_10000287 3300025904 Bacteria 41379
139 Ga0207647_10001225 3300025904 Bacteria 19750
140 Ga0207647_10021661 3300025904 Bacteria 4286
141 Ga0207705_10006840 3300025909 Bacteria 8426
142 Ga0207707_10000380 3300025912 Bacteria 46409
143 Ga0207707_10018802 3300025912 Bacteria 6027
144 Ga0207695_10001214 3300025913 Bacteria 44135
145 Ga0207695_10001325 3300025913 Bacteria 41991
146 Ga0207695_10007938 3300025913 Bacteria 13392
147 Ga0207671_10000074 3300025914 Bacteria 156482
148 Ga0207693_10164890 3300025915 Bacteria 1744
149 Ga0207660_10078150 3300025917 Bacteria 2424
150 Ga0207657_10058905 3300025919 Bacteria 3303
151 Ga0207652_10067397 3300025921 Bacteria 3104
152 Ga0207694_10028859 3300025924 Bacteria 4232
153 Ga0207694_10086838 3300025924 Bacteria 2463
154 Ga0207664_10000239 3300025929 Bacteria 41739
155 Ga0207664_10006363 3300025929 Bacteria 8117
156 Ga0207690_10004302 3300025932 Bacteria 8402
157 Ga0207690_10043776 3300025932 Bacteria 2948
158 Ga0207706_10105633 3300025933 Bacteria 2478
159 Ga0207667_10007269 3300025949 Bacteria 13354
160 Ga0207668_10043013 3300025972 Bacteria 3062
161 Ga0207640_10073461 3300025981 Bacteria 2311
162 Ga0207639_10074203 3300026041 Bacteria 2670
163 Ga0207678_10002963 3300026067 Bacteria 15378
164 Ga0207678_10026883 3300026067 Bacteria 5019
165 Ga0207678_10062874 3300026067 Bacteria 3190
166 Ga0207702_10000185 3300026078 Bacteria 74602
167 Ga0207674_10082942 3300026116 Bacteria 3205
168 Ga0207698_10002628 3300026142 Bacteria 10676
169 Ga0268266_10000021 3300028379 Bacteria 522453
170 Ga0268264_10168311 3300028381 Bacteria 1980
171 Ga0307412_10000781 3300031911 Bacteria 18387
172 Ga0307510_10000977 3300033180 Bacteria 30289
173 Ga0307510_10035492 3300033180 Bacteria 5568
174 Ga0316584_0034531 3300036712 Bacteria 3749
175 Ga0395899_0042048 3300037312 Bacteria 3413
176 Ga0395900_0000059 3300037418 Bacteria 205996
177 Ga0395900_0002590 3300037418 Bacteria 19782
178 Ga0395900_0009916 3300037418 Bacteria 9753
179 Ga0395900_0043161 3300037418 Bacteria 4647
180 Ga0395900_0071371 3300037418 Bacteria 3570
181 Ga0395898_0005590 3300037466 Bacteria 13559
182 Ga0395898_0015427 3300037466 Bacteria 7834
183 Ga0395898_0213708 3300037466 Bacteria 1840
184 Ga0395905_0153144 3300037471 Bacteria 2169
185 Ga0395901_0000153 3300038443 Bacteria 89901
186 Ga0395901_0000816 3300038443 Bacteria 34537
187 Ga0395901_0030740 3300038443 Bacteria 5533
188 Ga0395901_0088795 3300038443 Bacteria 3233
189 Ga0395901_0143067 3300038443 Bacteria 2514
190 Ga0439436_0000027 3300041404 Bacteria 53417
191 Ga0451807_2647826 3300041486 Bacteria 2467
192 Ga0450908_000108 3300042184 Bacteria 16859
193 Ga0439459_0000829 3300042438 Bacteria 4313
194 Ga0466972_0012286 3300044658 Bacteria 4303
195 Ga0466982_0000013 3300044672 Bacteria 136227
196 Ga0466982_0002835 3300044672 Bacteria 7270
197 Ga0466966_0002357 3300044684 Bacteria 12336
198 Ga0466964_0022588 3300044706 Bacteria 2442
199 Ga0466958_0037239 3300045836 Bacteria 2915
200 Ga0495617_000213 3300046452 Bacteria 35551
201 Ga0495617_000596 3300046452 Bacteria 18398
202 Ga0495638_0000007 3300046460 Bacteria 602783
203 Ga0495638_0001525 3300046460 Bacteria 20852
204 Ga0495638_0001952 3300046460 Bacteria 17692
205 Ga0495638_0001995 3300046460 Bacteria 17416
206 Ga0495650_0000497 3300046471 Bacteria 59612
207 Ga0495650_0001484 3300046471 Bacteria 22453
208 Ga0495650_0003493 3300046471 Bacteria 11412
209 Ga0495585_0000625 3300046492 Bacteria 32826
210 Ga0495585_0004279 3300046492 Bacteria 9295
211 Ga0495607_0000012 3300046501 Bacteria 195369
212 Ga0495607_0003808 3300046501 Bacteria 11381
213 Ga0495607_0041068 3300046501 Bacteria 2749
214 Ga0495606_0001257 3300046507 Bacteria 35388
215 Ga0495606_0001303 3300046507 Bacteria 34371
216 Ga0495606_0002115 3300046507 Bacteria 24116
217 Ga0495606_0006966 3300046507 Bacteria 10277
218 Ga0495606_0074184 3300046507 Bacteria 2132
219 Ga0495610_0001380 3300046512 Bacteria 21565
220 Ga0495616_0000423 3300046513 Bacteria 32568
221 Ga0495620_0001298 3300046515 Bacteria 15206
222 Ga0495631_0003656 3300046518 Bacteria 8398
223 Ga0495631_0006884 3300046518 Bacteria 5832
224 Ga0495632_0000019 3300046519 Bacteria 215713
225 Ga0495648_0001269 3300046524 Bacteria 25185
226 Ga0495648_0004834 3300046524 Bacteria 11371
227 Ga0495609_0012285 3300046538 Bacteria 4061
228 Ga0495668_0003294 3300046616 Bacteria 12234
229 Ga0495611_0000001 3300046648 Bacteria 2628469
230 Ga0495611_0000302 3300046648 Bacteria 33489
231 Ga0495625_0000325 3300046660 Bacteria 72731
232 Ga0495625_0005118 3300046660 Bacteria 12121
233 Ga0495625_0015681 3300046660 Bacteria 5991
234 Ga0495625_0029602 3300046660 Bacteria 4092
235 Ga0495625_0036095 3300046660 Bacteria 3637
236 Ga0495661_0001502 3300046665 Bacteria 19421
237 Ga0495671_0001281 3300046692 Bacteria 17150
238 Ga0495589_0000144 3300046794 Bacteria 65654
239 Ga0495660_0000436 3300046810 Bacteria 34957
240 Ga0495660_0000755 3300046810 Bacteria 24422
241 Ga0495683_0000513 3300047323 Bacteria 29708
242 Ga0495679_000001 3300047446 Bacteria 1607568
243 Ga0495673_0000072 3300047469 Bacteria 213166
244 Ga0495673_0000498 3300047469 Bacteria 41800
245 Ga0495673_0001239 3300047469 Bacteria 21140
246 Ga0495686_0000263 3300047472 Bacteria 94308
247 Ga0495686_0002324 3300047472 Bacteria 18174
248 Ga0495686_0007081 3300047472 Bacteria 8453
249 Ga0495686_0012881 3300047472 Bacteria 5830
250 Ga0496101_0001284 3300048904 Bacteria 15020
251 Ga0496105_0001649 3300048908 Bacteria 15902
252 Ga0496106_0001522 3300048909 Bacteria 17429
253 Ga0496107_0055941 3300048910 Bacteria 2850
254 Ga0496107_0118314 3300048910 Bacteria 1951
255 Ga0496115_0000025 3300048918 Bacteria 151658
256 Ga0496115_0001594 3300048918 Bacteria 16290
257 Ga0496115_0002239 3300048918 Bacteria 13857
258 Ga0496117_0004951 3300048920 Bacteria 14305
259 Ga0496117_0019844 3300048920 Bacteria 5503
260 Ga0496117_0022075 3300048920 Bacteria 5116
261 Ga0496118_0002079 3300048921 Bacteria 28158
262 Ga0496118_0003060 3300048921 Bacteria 21484
263 Ga0496118_0007552 3300048921 Bacteria 11483
264 Ga0496118_0022535 3300048921 Bacteria 5501
265 Ga0496119_0000058 3300048922 Bacteria 173131
266 Ga0496119_0005728 3300048922 Bacteria 11775
267 Ga0496119_0044025 3300048922 Bacteria 2815
268 Ga0496120_0001252 3300048923 Bacteria 31938
269 Ga0496120_0001892 3300048923 Bacteria 23232
270 Ga0496121_0000355 3300048924 Bacteria 94479
271 Ga0496121_0000401 3300048924 Bacteria 86663
272 Ga0496121_0003768 3300048924 Bacteria 21184
273 Ga0496121_0033002 3300048924 Bacteria 4694
274 Ga0496122_0050230 3300048925 Bacteria 3183
275 Ga0496122_0054503 3300048925 Bacteria 3002
276 Ga0496124_0000472 3300048927 Bacteria 69226
277 Ga0496124_0001586 3300048927 Bacteria 32782
278 Ga0496125_0005837 3300048928 Bacteria 13520
279 Ga0496125_0031137 3300048928 Bacteria 4760
280 Ga0496126_0001102 3300048929 Bacteria 45348
281 Ga0496126_0018003 3300048929 Bacteria 7022
282 Ga0496126_0018597 3300048929 Bacteria 6879
283 Ga0495678_000938 3300049459 Bacteria 25345
284 Ga0495678_027986 3300049459 Bacteria 2384
285 Ga0495682_0001348 3300049460 Bacteria 13552
286 Ga0495682_0010598 3300049460 Bacteria 3563
287 Ga0501033_0003826 3300049570 Bacteria 12248
288 Ga0501033_0012379 3300049570 Bacteria 6512
289 Ga0501034_0004478 3300049571 Bacteria 15529
290 Ga0501034_0063926 3300049571 Bacteria 3694
291 Ga0501034_0260934 3300049571 Bacteria 1675
292 Ga0501036_0024565 3300049572 Bacteria 5081
293 Ga0501037_0012562 3300049573 Bacteria 6239
294 Ga0501037_0014600 3300049573 Bacteria 5779
295 Ga0501038_0096006 3300049574 Bacteria 2475
296 Ga0501043_0029464 3300049579 Bacteria 4312
297 Ga0501043_0057782 3300049579 Bacteria 3045
298 Ga0501046_0015267 3300049580 Bacteria 6459
299 Ga0501046_0034281 3300049580 Bacteria 4098
300 Ga0501047_0040460 3300049581 Bacteria 4508
301 Ga0501047_0042492 3300049581 Bacteria 4392
302 Ga0501069_0000419 3300049585 Bacteria 19242
303 Ga0501070_0001470 3300049586 Bacteria 21108
304 Ga0501070_0005506 3300049586 Bacteria 10802
305 Ga0501070_0026629 3300049586 Bacteria 4851
306 Ga0501070_0037412 3300049586 Bacteria 4051
307 Ga0501077_0012073 3300049593 Bacteria 5407
308 Ga0501035_0012780 3300049822 Bacteria 7756
309 Ga0501035_0028105 3300049822 Bacteria 5136
310 Ga0501035_0045895 3300049822 Bacteria 3930
311 Ga0501035_0122589 3300049822 Bacteria 2271
312 Ga0501035_0167334 3300049822 Bacteria 1900
313 Ga0501044_0009120 3300049823 Bacteria 10836
314 Ga0501044_0021247 3300049823 Bacteria 6929
315 Ga0501044_0078872 3300049823 Bacteria 3337
316 Ga0501044_0186559 3300049823 Bacteria 2038
317 Ga0500643_000120 3300053087 Bacteria 81701
318 Ga0500645_003160 3300053730 Bacteria 6851
319 2919086769 2919085039 Bacteria 4532964
320 2538833027 2537561836 Bacteria 3910579
321 2595448076 2593339238 Bacteria 4182970
322 2595451372 2593339239 Bacteria 4124669
323 2643830889 2643221562 Bacteria 4048635
324 2643894169 2643221577 Bacteria 3710843
325 2644476371 2643221685 Bacteria 3673288
326 2687583358 2687453130 Bacteria 4227172
327 2721028593 2718218334 Bacteria 4765486
328 2735835816 2734482264 Unclassified 5014763
329 2739226979 2738543009 Bacteria 4944499
330 2739731925 2739367700 Bacteria 4747630
331 2819566560 2818991440 Bacteria 4774720
332 2842915034 2842914999 Bacteria 4419378
333 2842922266 2842918807 Bacteria 4289178
334 2884339595 2884338543 Bacteria 4610696
335 2884413344 2884411467 Bacteria 5246714
336 2895396913 2895395659 Bacteria 3983269
337 2904467216 2904463128 Bacteria 4775606
338 2919404451 2919404418 Bacteria 4232372
339 2928964623 2928963466 Bacteria 5165703
340 2939614284 2939611941 Bacteria 3892017
341 2941473817 2941471342 Bacteria 5018624
342 2953997384 2953994433 Bacteria 4303959
343 JGI24736J21556_1004255
344 JGI24740J21852_10012224
345 JGI24739J22299_10000301
346 JGI24737J22298_10001317
347 JGI24735J21928_10002905
348 JGI24738J21930_10005273
349 JGI25162J39368_1000226
350 JGI25162J39368_1000790
351 JGI25162J39368_1001503
352 JGI25162J39368_1002065
353 JGI25157J39369_1000345
354 JGI25157J39369_1000541
355 JGI25157J39369_1002029
356 JGI25163J39215_1000171
357 JGI25164J39214_1000214
358 JGI25164J39214_1000742
359 JGI25164J39214_1000752
360 JGI25165J46597_1000260
361 JGI25165J46597_1001473
362 JGI25165J46597_1002269
363 rootH2_10004402
364 rootH2_10146621
365 rootL2_10131042
366 Ga0006562J51391_1144215
367 Ga0055538_1001282
368 Ga0055533_1000711
369 Ga0055535_1000323
370 Ga0055542_1000067
371 Ga0055542_1000275
372 Ga0055529_1000233
373 Ga0065165_1000598
374 Ga0065165_1001244
375 Ga0070658_10001605
376 Ga0070670_100113281
377 Ga0070666_10000012
378 Ga0070680_100039792
379 Ga0070680_100086146
380 Ga0070682_100014826
381 Ga0070682_100041432
382 Ga0070660_100007972
383 Ga0070661_100004476
384 Ga0070668_100056565
385 Ga0070659_100003931
386 Ga0070714_100000650
387 Ga0070714_100035162
388 Ga0070713_100000697
389 Ga0070694_100043807
390 Ga0070663_100047970
391 Ga0070681_10000422
392 Ga0070681_10005861
393 Ga0070681_10172824
394 Ga0070685_10003620
395 Ga0070679_100046339
396 Ga0068853_100018135
397 Ga0070696_100004496
398 Ga0070696_100018008
399 Ga0070665_100005731
400 Ga0068855_100047136
401 Ga0068856_100000652
402 Ga0068856_100041438
403 Ga0068852_100006671
404 Ga0068851_10001144
405 Ga0068860_100201207
406 Ga0105240_10003480
407 Ga0105247_10006226
408 Ga0105237_10000007
409 Ga0105237_10033095
410 Ga0105238_10003195
411 Ga0105238_10009652
412 Ga0105238_10028781
413 Ga0105239_10000020
414 Ga0105239_10012353
415 Ga0105239_10070807
416 Ga0157373_10004922
417 Ga0157370_10000422
418 Ga0157370_10002917
419 Ga0157370_10006899
420 Ga0157370_10013489
421 Ga0157370_10027335
422 Ga0157369_10008218
423 Ga0157369_10018954
424 Ga0157369_10027269
425 Ga0157372_10021129
426 Ga0182008_10001234
427 Ga0182008_10010280
428 Ga0157376_10145121
429 Ga0182006_1000475
430 Ga0182006_1000544
431 Ga0182006_1016011
432 Ga0182007_10003607
433 Ga0182007_10016867
434 Ga0182007_10025605
435 Ga0182005_1000261
436 Ga0182005_1000513
437 Ga0182005_1004225
438 Ga0183369_1006
439 Ga0183368_1003
440 Ga0163161_10002263
441 Ga0163161_10083960
442 Ga0209760_100210
443 Ga0209784_100068
444 Ga0209566_101916
445 Ga0209674_100012
446 Ga0209674_101988
447 Ga0209672_100963
448 Ga0207427_100156
449 Ga0207427_100312
450 Ga0207427_100334
451 Ga0209437_100126
452 Ga0209437_100139
453 Ga0209437_100147
454 Ga0209437_100154
455 Ga0209437_101062
456 Ga0209258_100049
457 Ga0209258_101576
458 Ga0209646_1000517
459 Ga0209026_1000099
460 Ga0209026_1000405
461 Ga0209026_1000914
462 Ga0209148_1000002
463 Ga0209148_1000010
464 Ga0209148_1001677
465 Ga0209759_1000316
466 Ga0209759_1003052
467 Ga0209759_1007463
468 Ga0209759_1011421
469 Ga0209129_1005997
470 Ga0209129_1006817
471 Ga0209233_1000009
472 Ga0209233_1000083
473 Ga0209233_1000092
474 Ga0209233_1000191
475 Ga0209455_1000086
476 Ga0209455_1000357
477 Ga0209455_1005656
478 Ga0207426_1015579
479 Ga0207680_10000013
480 Ga0207647_10000287
481 Ga0207647_10001225
482 Ga0207647_10021661
483 Ga0207705_10006840
484 Ga0207707_10000380
485 Ga0207707_10018802
486 Ga0207695_10001214
487 Ga0207695_10001325
488 Ga0207695_10007938
489 Ga0207671_10000074
490 Ga0207693_10164890
491 Ga0207660_10078150
492 Ga0207657_10058905
493 Ga0207652_10067397
494 Ga0207694_10028859
495 Ga0207694_10086838
496 Ga0207664_10000239
497 Ga0207664_10006363
498 Ga0207690_10004302
499 Ga0207690_10043776
500 Ga0207706_10105633
501 Ga0207667_10007269
502 Ga0207668_10043013
503 Ga0207640_10073461
504 Ga0207639_10074203
505 Ga0207678_10002963
506 Ga0207678_10026883
507 Ga0207678_10062874
508 Ga0207702_10000185
509 Ga0207674_10082942
510 Ga0207698_10002628
511 Ga0268266_10000021
512 Ga0268264_10168311
513 Ga0307412_10000781
514 Ga0307510_10000977
515 Ga0307510_10035492
516 Ga0316584_0034531
517 Ga0395899_0042048
518 Ga0395900_0000059
519 Ga0395900_0002590
520 Ga0395900_0009916
521 Ga0395900_0043161
522 Ga0395900_0071371
523 Ga0395898_0005590
524 Ga0395898_0015427
525 Ga0395898_0213708
526 Ga0395905_0153144
527 Ga0395901_0000153
528 Ga0395901_0000816
529 Ga0395901_0030740
530 Ga0395901_0088795
531 Ga0395901_0143067
532 Ga0439436_0000027
533 Ga0451807_2647826
534 Ga0450908_000108
535 Ga0439459_0000829
536 Ga0466972_0012286
537 Ga0466982_0000013
538 Ga0466982_0002835
539 Ga0466966_0002357
540 Ga0466964_0022588
541 Ga0466958_0037239
542 Ga0495617_000213
543 Ga0495617_000596
544 Ga0495638_0000007
545 Ga0495638_0001525
546 Ga0495638_0001952
547 Ga0495638_0001995
548 Ga0495650_0000497
549 Ga0495650_0001484
550 Ga0495650_0003493
551 Ga0495585_0000625
552 Ga0495585_0004279
553 Ga0495607_0000012
554 Ga0495607_0003808
555 Ga0495607_0041068
556 Ga0495606_0001257
557 Ga0495606_0001303
558 Ga0495606_0002115
559 Ga0495606_0006966
560 Ga0495606_0074184
561 Ga0495610_0001380
562 Ga0495616_0000423
563 Ga0495620_0001298
564 Ga0495631_0003656
565 Ga0495631_0006884
566 Ga0495632_0000019
567 Ga0495648_0001269
568 Ga0495648_0004834
569 Ga0495609_0012285
570 Ga0495668_0003294
571 Ga0495611_0000001
572 Ga0495611_0000302
573 Ga0495625_0000325
574 Ga0495625_0005118
575 Ga0495625_0015681
576 Ga0495625_0029602
577 Ga0495625_0036095
578 Ga0495661_0001502
579 Ga0495671_0001281
580 Ga0495589_0000144
581 Ga0495660_0000436
582 Ga0495660_0000755
583 Ga0495683_0000513
584 Ga0495679_000001
585 Ga0495673_0000072
586 Ga0495673_0000498
587 Ga0495673_0001239
588 Ga0495686_0000263
589 Ga0495686_0002324
590 Ga0495686_0007081
591 Ga0495686_0012881
592 Ga0496101_0001284
593 Ga0496105_0001649
594 Ga0496106_0001522
595 Ga0496107_0055941
596 Ga0496107_0118314
597 Ga0496115_0000025
598 Ga0496115_0001594
599 Ga0496115_0002239
600 Ga0496117_0004951
601 Ga0496117_0019844
602 Ga0496117_0022075
603 Ga0496118_0002079
604 Ga0496118_0003060
605 Ga0496118_0007552
606 Ga0496118_0022535
607 Ga0496119_0000058
608 Ga0496119_0005728
609 Ga0496119_0044025
610 Ga0496120_0001252
611 Ga0496120_0001892
612 Ga0496121_0000355
613 Ga0496121_0000401
614 Ga0496121_0003768
615 Ga0496121_0033002
616 Ga0496122_0050230
617 Ga0496122_0054503
618 Ga0496124_0000472
619 Ga0496124_0001586
620 Ga0496125_0005837
621 Ga0496125_0031137
622 Ga0496126_0001102
623 Ga0496126_0018003
624 Ga0496126_0018597
625 Ga0495678_000938
626 Ga0495678_027986
627 Ga0495682_0001348
628 Ga0495682_0010598
629 Ga0501033_0003826
630 Ga0501033_0012379
631 Ga0501034_0004478
632 Ga0501034_0063926
633 Ga0501034_0260934
634 Ga0501036_0024565
635 Ga0501037_0012562
636 Ga0501037_0014600
637 Ga0501038_0096006
638 Ga0501043_0029464
639 Ga0501043_0057782
640 Ga0501046_0015267
641 Ga0501046_0034281
642 Ga0501047_0040460
643 Ga0501047_0042492
644 Ga0501069_0000419
645 Ga0501070_0001470
646 Ga0501070_0005506
647 Ga0501070_0026629
648 Ga0501070_0037412
649 Ga0501077_0012073
650 Ga0501035_0012780
651 Ga0501035_0028105
652 Ga0501035_0045895
653 Ga0501035_0122589
654 Ga0501035_0167334
655 Ga0501044_0009120
656 Ga0501044_0021247
657 Ga0501044_0078872
658 Ga0501044_0186559
659 Ga0500643_000120
660 Ga0500645_003160
661 2919086769
662 2538833027
663 2595448076
664 2595451372
665 2643830889
666 2643894169
667 2644476371
668 2687583358
669 2721028593
670 2735835816
671 2739226979
672 2739731925
673 2819566560
674 2842915034
675 2842922266
676 2884339595
677 2884413344
678 2895396913
679 2904467216
680 2919404451
681 2928964623
682 2939614284
683 2941473817
684 2953997384

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF01476

LysM

LysM domain

506

548

0.99

PF01520

Amidase_3

N-acetylmuramoyl-L-alanine amidase

169

385

0.98

PF11741

AMIN

AMIN domain

1

97

0.9

Structural Annotation

Top 5 Hits

ID Description Score Start End
4uz3-assembly3.cif.gz_C crystal structure of the n-terminal lysm domains from the putative nlpc/p60 d,l endopeptidase from t. thermophilus bound to n-acetyl-chitohexaose 0.9608 450 496
5jcd-assembly2.cif.gz_B crystal structure of oscebip 0.9557 452 495
4xcm-assembly1.cif.gz_A crystal structure of the putative nlpc/p60 d,l endopeptidase from t. thermophilus 0.953 451 496
4uz3-assembly3.cif.gz_C crystal structure of the n-terminal lysm domains from the putative nlpc/p60 d,l endopeptidase from t. thermophilus bound to n-acetyl-chitohexaose 0.9417 450 496
5c8q-assembly1.cif.gz_B crystal structure of mocvnh3 variant (mo0v) in complex with (n-glcnac)4 0.9223 450 494
ID Description Score Start End Superfamily
4uz3C00 Alpha Beta;Roll;Membrane-bound Lytic Murein Transglycosylase D; Chain A;LysM domain 0.9608 450 496 3.10.350.10
af_I1KQ51_169_229_3.10.350.10 Alpha Beta;Roll;Membrane-bound Lytic Murein Transglycosylase D; Chain A;LysM domain 0.9495 449 495 3.10.350.10
af_I1JZ72_160_227_3.10.350.10 Alpha Beta;Roll;Membrane-bound Lytic Murein Transglycosylase D; Chain A;LysM domain 0.9448 449 495 3.10.350.10
4uz3C00 Alpha Beta;Roll;Membrane-bound Lytic Murein Transglycosylase D; Chain A;LysM domain 0.9417 450 496 3.10.350.10
5c8qB02 Alpha Beta;Roll;Membrane-bound Lytic Murein Transglycosylase D; Chain A;LysM domain 0.9309 451 492 3.10.350.10
ID Description Score Start End GO Terms
AF-A0A7Y4SFY1-F1-model_v4 N-acetylmuramoyl-L-alanine amidase (EC 3.5.1.28) 0.8942 182 409 GO:0008745
GO:0009253
GO:0030288
AF-A0A7V8BRI6-F1-model_v4 deleted 0.8939 205 410
AF-W1Y252-F1-model_v4 N-acetylmuramoyl-L-alanine amidase AmiC 0.891 183 269 GO:0008745
GO:0009253
GO:0030288
AF-A0A508AX48-F1-model_v4 N-acetylmuramoyl-L-alanine amidase (EC 3.5.1.28) 0.8905 185 424 GO:0008745
GO:0009253
GO:0030288
AF-A0A259S7S4-F1-model_v4 N-acetylmuramoyl-L-alanine amidase (EC 3.5.1.28) 0.8774 223 416 GO:0008745
GO:0009253
GO:0030288

Map