F415776

General Info

Members Datasets Scaffolds Average Seq Length
343 208 687 450

Family's Representative Sequence

Representative Sequence 3300053153|Ga0500616_0000043|Ga0500616_0000043_267031_268461
Length 476
Sequence LNKRRASFLEGENEEYKDQTEIMGKKLLTANINIPGIETFDVYRKNGGYASVEKALKTMTPDEVTEEVKKSGLRGRGGAGFPAGMKWSFLDRKSEKPRYLVCNADESEPGTFKDRYLMEKIPHLLIEGMITGSYALGARTSYIYIRGEYMYIVRILEKAIEEAYAAGFLGQNILGTPYSLDLYVHPGAGAYICGEETALLESLEGKRGNPRLKPPFPAVAGLYAAPTVVNNVETIAAVVPIVNGGGDEYAKIGIGKSTGTKLISASGHINKPGIYEIDLGLPVEEFIYSDEYCGGIWRGRKMKAVVAGGSSVPILPADLILKTAKGEQRLMTYESLADGGFVSGTMLGSGGFIVYDETACIVRNLWTFARFYHHESCGQCSPCREGTGWMEKVLHRIEHGHGHMSDIDLLVDVAKKIEGNTICPLGDAAAWPVASAIRHFREEFEYHVKYPEKVSNPKHFELEPFRSEKKLEAVGA

Samples

Sample ID Description Type Environment
1 3300053153 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 endosphere Metagenome Endosphere
2 3300001904 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2 Metagenome Rhizosphere
3 3300001989 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5 Metagenome Rhizosphere
4 3300001990 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3 Metagenome Rhizosphere
5 3300002067 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C1 Metagenome Rhizosphere
6 3300002773 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMS Metagenome Endosphere
7 3300002774 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mTSA Metagenome Endosphere
8 3300003187 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mLB Metagenome Endosphere
9 3300003214 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mCL Metagenome Endosphere
10 3300003215 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF Metagenome Endosphere
11 3300003316 Sugarcane root Sample L1 Metagenome Unclassified
12 3300003320 Sugarcane root Sample H2 Metagenome Unclassified
13 3300003322 Sugarcane root Sample L2 Metagenome Unclassified
14 3300003323 Sugarcane root Sample H1 Metagenome Unclassified
15 3300003781 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mLB_r2 Metagenome Endosphere
16 3300003794 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 Metagenome Endosphere
17 3300004799 Switchgrass rhizosphere and bulk soil microbial communities from Kellogg Biological Station, Michigan, USA for expression studies - soil CB-3 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
18 3300004800 Switchgrass rhizosphere and bulk soil microbial communities from Kellogg Biological Station, Michigan, USA for expression studies - soil CB-1 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
19 3300004803 Switchgrass rhizosphere and bulk soil microbial communities from Kellogg Biological Station, Michigan, USA for expression studies - soil CB-2 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
20 3300005262 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMF (version 2) (version 3) Metagenome Endosphere
21 3300005288 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Rhizosphere Soil Replicate 2: eDNA_1 v2 (version 2) Metagenome Rhizosphere
22 3300005289 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 v2 (version 2) Metagenome Rhizosphere
23 3300005327 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG Metagenome Rhizosphere
24 3300005336 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG Metagenome Rhizosphere
25 3300005339 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG Metagenome Rhizosphere
26 3300005455 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG Metagenome Rhizosphere
27 3300005457 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG Metagenome Rhizosphere
28 3300005458 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG Metagenome Rhizosphere
29 3300005530 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG Metagenome Rhizosphere
30 3300005539 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 Metagenome Rhizosphere
31 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
32 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
33 3300005578 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 Metagenome Rhizosphere
34 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
35 3300005834 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C1-2 Metagenome Rhizosphere
36 3300005841 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 Metagenome Rhizosphere
37 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
38 3300005937 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1 Metagenome Rhizosphere
39 3300006195 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 Metagenome Endosphere
40 3300006881 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 Metagenome Rhizosphere
41 3300009036 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-4 metaG Metagenome Rhizosphere
42 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
43 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
44 3300009098 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG Metagenome Rhizosphere
45 3300009174 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG Metagenome Rhizosphere
46 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
47 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
48 3300010159 Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_3 Metagenome Rhizosphere
49 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
50 3300013100 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6-5 metaG Metagenome Rhizosphere
51 3300013102 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG Metagenome Rhizosphere
52 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
53 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
54 3300013296 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG Metagenome Rhizosphere
55 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
56 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
57 3300014326 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG Metagenome Rhizosphere
58 3300014497 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-129_1 metaG Metagenome Rhizosphere
59 3300015261 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-104_1 MetaG Metagenome Rhizosphere
60 3300015262 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-113_1 MetaG Metagenome Rhizosphere
61 3300015682 Rizhosphere microbial communities from mature sugarcane plants Campinas, Sao Paulo, Brazil - 001.1_A01 Metagenome Rhizosphere
62 3300017792 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG Metagenome Rhizosphere
63 3300020077 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5pm-1 (Metagenome Metatranscriptome) (v2) (version 2) Metatranscriptome Rhizosphere
64 3300025231 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mMS (SPAdes) (version 2) Metagenome Endosphere
65 3300025233 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mTSA (SPAdes) (version 2) Metagenome Endosphere
66 3300025245 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mTSA (SPAdes) (version 3) Metagenome Endosphere
67 3300025258 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMS (SPAdes) (version 3) Metagenome Endosphere
68 3300025261 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mCL (SPAdes) (version 2) Metagenome Endosphere
69 3300025292 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mLB_r2 (SPAdes) (version 2) Metagenome Endosphere
70 3300025294 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mLB (SPAdes) (version 2) Metagenome Endosphere
71 3300025297 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF (SPAdes) (version 2) Metagenome Endosphere
72 3300025298 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 (SPAdes) (version 2) Metagenome Endosphere
73 3300025304 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
74 3300025321 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C1-2 (SPAdes) (version 2) Metagenome Rhizosphere
75 3300025728 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
76 3300025904 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2 (SPAdes) (version 2) Metagenome Rhizosphere
77 3300025909 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
78 3300025911 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
79 3300025912 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
80 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
81 3300025914 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
82 3300025919 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
83 3300025921 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
84 3300025927 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
85 3300025933 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
86 3300025938 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 (SPAdes) (version 2) Metagenome Rhizosphere
87 3300025945 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
88 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
89 3300026067 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
90 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
91 3300026095 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes) (version 2) Metagenome Rhizosphere
92 3300026142 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes) (version 2) Metagenome Rhizosphere
93 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
94 3300028381 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) Metagenome Rhizosphere
95 3300028786 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 23_EM Metagenome Unclassified
96 3300028794 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM Metagenome Unclassified
97 3300031251 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-21 metaG Metagenome Rhizosphere
98 3300031507 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 10_EM Metagenome Unclassified
99 3300031548 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3 Metagenome Rhizosphere
100 3300031711 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-26 metaG Metagenome Rhizosphere
101 3300031731 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-1 Metagenome Rhizosphere
102 3300031903 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-1 Metagenome Rhizosphere
103 3300031911 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1 Metagenome Rhizosphere
104 3300031995 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2 Metagenome Rhizosphere
105 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
106 3300032004 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3 Metagenome Rhizosphere
107 3300032126 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-2 Metagenome Rhizosphere
108 3300033179 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 7_EM Metagenome Unclassified
109 3300033180 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 12_EM Metagenome Unclassified
110 3300035170 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_1 Metagenome Rhizosphere
111 3300035695 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_19 Metagenome Rhizosphere
112 3300036401 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_16 Metagenome Rhizosphere
113 3300037312 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_B SG_2 Metagenome Rhizosphere
114 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
115 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
116 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
117 3300042014 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0216WE14Z070717_5275 Metagenome Rhizosphere
118 3300042435 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0503WE14Z082817_5613 Metagenome Rhizosphere
119 3300042876 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9GH_GED Metagenome Rhizosphere
120 3300044656 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA1R Metagenome Rhizosphere
121 3300044673 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Bulk_9BB_GED Metagenome Rhizosphere
122 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
123 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
124 3300046453 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co3_8_57 rhizosphere Metagenome Rhizosphere
125 3300046459 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL3_88_32 rhizosphere Metagenome Rhizosphere
126 3300046460 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co3_31_37 rhizosphere Metagenome Rhizosphere
127 3300046462 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-86-CL2_69_17 rhizosphere Metagenome Rhizosphere
128 3300046471 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co3_9_34 rhizosphere Metagenome Rhizosphere
129 3300046492 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co3_21_57 rhizosphere Metagenome Rhizosphere
130 3300046506 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co1_30_3 rhizosphere Metagenome Rhizosphere
131 3300046507 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co2_62_14 rhizosphere Metagenome Rhizosphere
132 3300046512 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co2_50_17 rhizosphere Metagenome Rhizosphere
133 3300046513 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-351-Co2_42_17 rhizosphere Metagenome Rhizosphere
134 3300046518 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co1_22_4 rhizosphere Metagenome Rhizosphere
135 3300046520 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co2_47_23 rhizosphere Metagenome Rhizosphere
136 3300046523 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co3_28_42 rhizosphere Metagenome Rhizosphere
137 3300046526 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-4579-CL1_25_23 rhizosphere Metagenome Rhizosphere
138 3300046529 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-866-CL2_50_11 rhizosphere Metagenome Rhizosphere
139 3300046535 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL1_28_16 rhizosphere Metagenome Rhizosphere
140 3300046538 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co1_12_7 rhizosphere Metagenome Rhizosphere
141 3300046558 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co3_6_53 rhizosphere Metagenome Rhizosphere
142 3300046616 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co1_14_4 rhizosphere Metagenome Rhizosphere
143 3300046660 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co1_32_7 rhizosphere Metagenome Rhizosphere
144 3300046665 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co3_16_51 rhizosphere Metagenome Rhizosphere
145 3300046694 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 rhizosphere Metagenome Rhizosphere
146 3300046810 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co2_51_17 rhizosphere Metagenome Rhizosphere
147 3300047320 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co2_68_28 rhizosphere Metagenome Rhizosphere
148 3300047321 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL3_98_5 rhizosphere Metagenome Rhizosphere
149 3300047323 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWA-24-3-Co3_23_35 rhizosphere Metagenome Rhizosphere
150 3300047443 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co3_24_32 rhizosphere Metagenome Rhizosphere
151 3300047469 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co3_31_39 rhizosphere Metagenome Rhizosphere
152 3300047472 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co2_54_22 rhizosphere Metagenome Rhizosphere
153 3300048918 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6d N15 Metagenome Rhizoplane
154 3300048925 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8x unlabeled Metagenome Unclassified
155 3300048926 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8y unlabeled Metagenome Unclassified
156 3300049459 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co2_62_24 rhizosphere Metagenome Rhizosphere
157 3300049531 Metatranscriptome of panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - H4_A_2_drought (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
158 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
159 3300049572 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 Metagenome Rhizosphere
160 3300049573 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_01 Metagenome Rhizosphere
161 3300049582 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_03 Metagenome Rhizosphere
162 3300049661 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - I5_B_0_control Metagenome Rhizosphere
163 3300049670 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - F4_B_2_drought Metagenome Rhizosphere
164 3300049671 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - H12_A_3_drought Metagenome Rhizosphere
165 3300049674 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - F11_A_3_drought Metagenome Rhizosphere
166 3300049686 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - I11_B_3_control Metagenome Rhizosphere
167 3300049758 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - D15_A_3_drought Metagenome Rhizosphere
168 3300049761 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - I14_A_4_control Metagenome Rhizosphere
169 3300050493 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 re-annotation Metagenome Endosphere
170 3300053093 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co2_62_24 endosphere Metagenome Endosphere
171 3300053122 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL3_77_6 endosphere Metagenome Endosphere
172 3300053125 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL1_28_5 endosphere Metagenome Endosphere
173 3300053151 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co1_22_4 endosphere Metagenome Endosphere
174 3300053156 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 endosphere Metagenome Endosphere
175 3300053161 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co3_16_51 endosphere Metagenome Endosphere
176 2522125168 Dyadobacter beijingensis DSM 21582 Isolate Rhizosphere
177 2585427687 Pedobacter borealis DSM 19626 Isolate Rhizosphere
178 2599185184 Mucilaginibacter sp. NFR10 Isolate Rhizoplane
179 2738541283 Pedobacter sp. OK701 Isolate Unclassified
180 2738541284 Pedobacter sp. YR016 Isolate Unclassified
181 2738541302 Pedobacter sp. CF074 Isolate Unclassified
182 2738543023 Pedobacter sp. OK628 Isolate Unclassified
183 2739367651 Pedobacter sp. OK291 Isolate Unclassified
184 2739367656 Pedobacter sp. CF523 Isolate Unclassified
185 2739367663 Pedobacter sp. YR510 Isolate Unclassified
186 2775506987 Pedobacter ginsengisoli T01R-27 Isolate Unclassified
187 2818991437 Pedobacter terrae 518 Isolate Unclassified
188 2842722452 Pedobacter sp. R-72249 Isolate Unclassified
189 2842909656 Pedobacter sp. R-72393 Isolate Unclassified
190 2849281842 Pedobacter sp. AK013 Isolate Rhizosphere
191 2852623160 Mucilaginibacter sp. AK015 Isolate Rhizosphere
192 2852627209 Pedobacter sp. AK017 Isolate Rhizosphere
193 2857627736 Pedobacter sp. R-74587 Isolate Unclassified
194 2884933994 Mucilaginibacter sp. 14171R-50 Isolate Rhizosphere
195 2890804823 Fluviicola sp. SGL-29 Isolate Rhizosphere
196 2902048731 Pedobacter ureilyticus THG-T11 Isolate Rhizosphere
197 2904445276 Pedobacter terrae 1734 Isolate Rhizosphere
198 2910245624 Adhaeribacter radiodurans KUDC8001 Isolate Rhizosphere
199 2911138879 Spirosoma sp. KUDC1026 Isolate Rhizosphere
200 2919186247 Pedobacter africanus 2697 Isolate Rhizosphere
201 2919437846 Mucilaginibacter pocheonensis 3262 Isolate Rhizosphere
202 2928078545 Mucilaginibacter rubeus 1215 Isolate Unclassified
203 2928147474 Mucilaginibacter rubeus 2025 Isolate Unclassified
204 2932082852 Mucilaginibacter sp. 3215 Isolate Rhizosphere
205 2939664404 Pedobacter africanus 2990 Isolate Rhizosphere
206 2945997725 Pedobacter sp. W3I1 Isolate Rhizosphere
207 2954016120 Flavobacterium sp. W4I14 Isolate Rhizosphere
208 2977232053 Mucilaginibacter terrae SORGH_AS 422 Isolate Unclassified

Type Distribution

Type Percentage (%)
Metagenomes 88.92
Metatranscriptomes 1.46
Isolates 9.62

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 11.95
Nodule 0
Rhizoplane 0.58
Rhizosphere 76.68
Stem 0
Stem Tuber 0
Unclassified 0

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0500616_0000043 3300053153 Bacteria 342930
2 JGI24736J21556_1003634 3300001904 Bacteria 2667
3 JGI24739J22299_10019994 3300001989 Bacteria 2394
4 JGI24737J22298_10000060 3300001990 Bacteria 32592
5 JGI24735J21928_10000032 3300002067 Bacteria 72360
6 JGI25152J39213_1000064 3300002773 Bacteria 70321
7 JGI25150J39212_1000004 3300002774 Bacteria 417320
8 JGI25151J46595_10000002 3300003187 Bacteria 731381
9 JGI25165J46597_1000742 3300003214 Bacteria 25223
10 JGI25153J46596_10000037 3300003215 Bacteria 182199
11 rootH1_10004943 3300003316 Bacteria 35922
12 rootH1_10004943 3300003323 Bacteria 7849
13 rootH2_10009361 3300003320 Bacteria 18045
14 rootH2_10012611 3300003320 Bacteria 9224
15 rootH2_10056807 3300003320 Bacteria 2223
16 rootH2_10172198 3300003320 Bacteria 2601
17 rootL2_10184165 3300003322 Bacteria 4816
18 rootH1_10010623 3300003323 Bacteria 3304
19 rootH1_10012646 3300003323 Bacteria 62371
20 rootH1_10027403 3300003323 Bacteria 72977
21 rootH1_10037602 3300003323 Bacteria 6763
22 rootH1_10128349 3300003323 Bacteria 6398
23 Ga0055536_1000006 3300003781 Bacteria 347733
24 Ga0055531_10000868 3300003794 Bacteria 24791
25 Ga0058863_10008894 3300004799 Bacteria 11745
26 Ga0058861_11827112 3300004800 Bacteria 5337
27 Ga0058862_10143705 3300004803 Bacteria 8181
28 Ga0065165_1000176 3300005262 Bacteria 113592
29 Ga0065165_1001313 3300005262 Bacteria 27754
30 Ga0065714_10003510 3300005288 Bacteria 9251
31 Ga0065714_10006750 3300005288 Bacteria 4529
32 Ga0065714_10013705 3300005288 Bacteria 2657
33 Ga0065714_10065068 3300005288 Bacteria 13285
34 Ga0065714_10065706 3300005288 Bacteria 8788
35 Ga0065714_10100956 3300005288 Bacteria 1642
36 Ga0065704_10000273 3300005289 Bacteria 42739
37 Ga0065704_10090701 3300005289 Bacteria 2769
38 Ga0070658_10000008 3300005327 Bacteria 319912
39 Ga0070680_100005673 3300005336 Bacteria 9465
40 Ga0070660_100004582 3300005339 Bacteria 9553
41 Ga0070660_100008013 3300005339 Bacteria 7382
42 Ga0070663_100030150 3300005455 Bacteria 3714
43 Ga0070662_100000090 3300005457 Bacteria 49884
44 Ga0070681_10019337 3300005458 Bacteria 6817
45 Ga0070679_100019798 3300005530 Bacteria 6552
46 Ga0068853_100214069 3300005539 Bacteria 1757
47 Ga0070665_100000118 3300005548 Bacteria 149830
48 Ga0068855_100000049 3300005563 Bacteria 145321
49 Ga0068855_100000155 3300005563 Bacteria 86903
50 Ga0068855_100032317 3300005563 Bacteria 6250
51 Ga0068854_100163732 3300005578 Bacteria 1725
52 Ga0068856_100001430 3300005614 Bacteria 25032
53 Ga0068856_100007465 3300005614 Bacteria 10673
54 Ga0068856_100007533 3300005614 Bacteria 10623
55 Ga0068851_10000057 3300005834 Bacteria 66791
56 Ga0068863_100233134 3300005841 Bacteria 1776
57 Ga0068860_100057443 3300005843 Bacteria 3699
58 Ga0081455_10008205 3300005937 Bacteria 10887
59 Ga0075366_10000135 3300006195 Bacteria 30916
60 Ga0075366_10000556 3300006195 Bacteria 17427
61 Ga0068865_100002736 3300006881 Bacteria 10472
62 Ga0105244_10008757 3300009036 Bacteria 6292
63 Ga0105240_10002021 3300009093 Bacteria 33455
64 Ga0105240_10054425 3300009093 Bacteria 5015
65 Ga0105240_10084083 3300009093 Bacteria 3903
66 Ga0111539_10149423 3300009094 Bacteria 2735
67 Ga0105245_10072888 3300009098 Bacteria 3121
68 Ga0105241_10000804 3300009174 Bacteria 23826
69 Ga0105237_10000394 3300009545 Bacteria 62227
70 Ga0105237_10001504 3300009545 Bacteria 30678
71 Ga0105237_10003766 3300009545 Bacteria 17851
72 Ga0105237_10010052 3300009545 Bacteria 10092
73 Ga0105238_10040227 3300009551 Bacteria 4738
74 Ga0099796_10009344 3300010159 Bacteria 2651
75 Ga0105239_10000049 3300010375 Bacteria 177578
76 Ga0105239_10000166 3300010375 Bacteria 94743
77 Ga0105239_10012380 3300010375 Bacteria 9498
78 Ga0105239_10017420 3300010375 Bacteria 7945
79 Ga0105239_10020179 3300010375 Bacteria 7352
80 Ga0105239_10247045 3300010375 Bacteria 2004
81 Ga0157373_10000086 3300013100 Bacteria 80524
82 Ga0157373_10001842 3300013100 Bacteria 16117
83 Ga0157373_10008022 3300013100 Bacteria 7847
84 Ga0157371_10000027 3300013102 Bacteria 269243
85 Ga0157371_10007301 3300013102 Bacteria 8975
86 Ga0157371_10011057 3300013102 Bacteria 6991
87 Ga0157370_10002773 3300013104 Bacteria 20941
88 Ga0157370_10003748 3300013104 Bacteria 17761
89 Ga0157370_10060967 3300013104 Bacteria 3580
90 Ga0157369_10000053 3300013105 Bacteria 162962
91 Ga0157369_10003605 3300013105 Bacteria 18401
92 Ga0157374_10000301 3300013296 Bacteria 45768
93 Ga0157374_10040216 3300013296 Bacteria 4305
94 Ga0163162_10000012 3300013306 Bacteria 292674
95 Ga0163162_10000078 3300013306 Bacteria 89842
96 Ga0163162_10001704 3300013306 Bacteria 20605
97 Ga0163162_10157883 3300013306 Bacteria 2389
98 Ga0157372_10000039 3300013307 Bacteria 165839
99 Ga0157372_10002381 3300013307 Bacteria 20343
100 Ga0157372_10025844 3300013307 Bacteria 6386
101 Ga0157380_10000001 3300014326 Bacteria 254890
102 Ga0157380_10000314 3300014326 Bacteria 29344
103 Ga0182008_10000020 3300014497 Bacteria 228333
104 Ga0182008_10000053 3300014497 Bacteria 102934
105 Ga0182008_10000336 3300014497 Bacteria 36783
106 Ga0182008_10009526 3300014497 Bacteria 5238
107 Ga0182008_10059651 3300014497 Bacteria 1882
108 Ga0182006_1001480 3300015261 Bacteria 14113
109 Ga0182006_1001934 3300015261 Bacteria 11766
110 Ga0182006_1002073 3300015261 Bacteria 11213
111 Ga0182006_1002254 3300015261 Bacteria 10653
112 Ga0182007_10000005 3300015262 Bacteria 442702
113 Ga0182007_10020801 3300015262 Bacteria 2339
114 Ga0182007_10024589 3300015262 Bacteria 2106
115 Ga0183373_1007 3300015682 Bacteria 282776
116 Ga0163161_10022159 3300017792 Bacteria 4471
117 Ga0163161_10069997 3300017792 Bacteria 2565
118 Ga0206351_10407532 3300020077 Bacteria 2565
119 Ga0207427_100122 3300025231 Bacteria 99064
120 Ga0209437_100048 3300025233 Bacteria 405107
121 Ga0209437_100102 3300025233 Bacteria 224216
122 Ga0207425_1000003 3300025245 Bacteria 1145342
123 Ga0209129_1000022 3300025258 Bacteria 440876
124 Ga0209233_1000029 3300025261 Bacteria 641642
125 Ga0209676_1000039 3300025292 Bacteria 443158
126 Ga0209676_1000485 3300025292 Bacteria 64653
127 Ga0209025_1000007 3300025294 Bacteria 1145109
128 Ga0209758_1000012 3300025297 Bacteria 949866
129 Ga0209050_1000033 3300025298 Bacteria 442615
130 Ga0209050_1004236 3300025298 Bacteria 9858
131 Ga0209050_1035231 3300025298 Bacteria 1483
132 Ga0209257_1000006 3300025304 Bacteria 1570111
133 Ga0207656_10000048 3300025321 Bacteria 46689
134 Ga0207655_1022845 3300025728 Bacteria 3119
135 Ga0207647_10000018 3300025904 Bacteria 124816
136 Ga0207705_10000026 3300025909 Bacteria 256051
137 Ga0207654_10001026 3300025911 Bacteria 15268
138 Ga0207654_10017176 3300025911 Bacteria 3780
139 Ga0207707_10013779 3300025912 Bacteria 7051
140 Ga0207695_10000142 3300025913 Bacteria 214715
141 Ga0207695_10014909 3300025913 Bacteria 9174
142 Ga0207695_10015835 3300025913 Bacteria 8858
143 Ga0207695_10082084 3300025913 Bacteria 3260
144 Ga0207671_10000110 3300025914 Bacteria 126480
145 Ga0207671_10001102 3300025914 Bacteria 32573
146 Ga0207671_10001959 3300025914 Bacteria 22712
147 Ga0207671_10019924 3300025914 Bacteria 5117
148 Ga0207671_10022720 3300025914 Bacteria 4739
149 Ga0207657_10023154 3300025919 Bacteria 5790
150 Ga0207652_10003461 3300025921 Bacteria 13016
151 Ga0207652_10045181 3300025921 Bacteria 3754
152 Ga0207687_10040078 3300025927 Bacteria 3209
153 Ga0207706_10005255 3300025933 Bacteria 12077
154 Ga0207704_10000047 3300025938 Bacteria 84386
155 Ga0207679_10085714 3300025945 Bacteria 2421
156 Ga0207667_10000015 3300025949 Bacteria 417534
157 Ga0207667_10012483 3300025949 Bacteria 9783
158 Ga0207667_10026801 3300025949 Bacteria 6289
159 Ga0207667_10064910 3300025949 Bacteria 3809
160 Ga0207667_10098100 3300025949 Bacteria 3024
161 Ga0207667_10286904 3300025949 Bacteria 1682
162 Ga0207678_10047328 3300026067 Bacteria 3719
163 Ga0207702_10002682 3300026078 Bacteria 16707
164 Ga0207702_10019319 3300026078 Bacteria 5638
165 Ga0207702_10069316 3300026078 Bacteria 3032
166 Ga0207702_10084771 3300026078 Bacteria 2760
167 Ga0207676_10136556 3300026095 Bacteria 2093
168 Ga0207698_10010495 3300026142 Bacteria 5959
169 Ga0268266_10000121 3300028379 Bacteria 154995
170 Ga0268264_10039110 3300028381 Bacteria 3919
171 Ga0307517_10000198 3300028786 Bacteria 102181
172 Ga0307515_10000001 3300028794 Bacteria 4259510
173 Ga0307515_10000003 3300028794 Bacteria 891317
174 Ga0307515_10001436 3300028794 Bacteria 53821
175 Ga0307515_10056048 3300028794 Bacteria 5739
176 Ga0307515_10154315 3300028794 Bacteria 2380
177 Ga0265327_10014797 3300031251 Bacteria 5080
178 Ga0265327_10067597 3300031251 Bacteria 1800
179 Ga0307509_10123427 3300031507 Bacteria 2562
180 Ga0307408_100000396 3300031548 Bacteria 39439
181 Ga0307408_100000464 3300031548 Bacteria 35518
182 Ga0307408_100000560 3300031548 Bacteria 32128
183 Ga0307408_100001326 3300031548 Bacteria 18558
184 Ga0307408_100028499 3300031548 Bacteria 3859
185 Ga0265314_10009334 3300031711 Bacteria 8301
186 Ga0307405_10019142 3300031731 Bacteria 3795
187 Ga0307405_10056208 3300031731 Bacteria 2467
188 Ga0307405_10058318 3300031731 Bacteria 2429
189 Ga0307407_10000001 3300031903 Bacteria 570048
190 Ga0307412_10000001 3300031911 Bacteria 822691
191 Ga0307409_100080694 3300031995 Bacteria 2626
192 Ga0307416_100000008 3300032002 Bacteria 401343
193 Ga0307416_100000457 3300032002 Bacteria 20948
194 Ga0307414_10000414 3300032004 Bacteria 23018
195 Ga0307414_10000470 3300032004 Bacteria 21107
196 Ga0307414_10002491 3300032004 Bacteria 9655
197 Ga0307414_10017713 3300032004 Bacteria 4365
198 Ga0307415_100096313 3300032126 Bacteria 2157
199 Ga0307507_10000099 3300033179 Bacteria 139532
200 Ga0307510_10005580 3300033180 Bacteria 14995
201 Ga0373943_0023571 3300035170 Bacteria 2863
202 Ga0373927_0013797 3300035695 Bacteria 5363
203 Ga0373937_0252335 3300036401 Bacteria 1663
204 Ga0395899_0000024 3300037312 Bacteria 357402
205 Ga0395899_0000027 3300037312 Bacteria 337387
206 Ga0395899_0019564 3300037312 Bacteria 5141
207 Ga0395900_0001518 3300037418 Bacteria 27559
208 Ga0395900_0006443 3300037418 Bacteria 12236
209 Ga0395905_0000327 3300037471 Bacteria 68334
210 Ga0395901_0000921 3300038443 Bacteria 32043
211 Ga0395901_0008911 3300038443 Bacteria 10162
212 Ga0439457_009459 3300042014 Bacteria 2268
213 Ga0439457_010721 3300042014 Bacteria 2100
214 Ga0439434_0007986 3300042435 Bacteria 3101
215 Ga0451577_0000435 3300042876 Bacteria 74303
216 Ga0451577_0053529 3300042876 Bacteria 3603
217 Ga0451577_0054835 3300042876 Bacteria 3558
218 Ga0451577_0109438 3300042876 Bacteria 2471
219 Ga0451577_0120114 3300042876 Bacteria 2354
220 Ga0466969_0013019 3300044656 Bacteria 4381
221 Ga0453683_0000032 3300044673 Bacteria 241702
222 Ga0453683_0123681 3300044673 Bacteria 1629
223 Ga0453684_0043918 3300044712 Bacteria 5994
224 Ga0453684_0086754 3300044712 Bacteria 3882
225 Ga0453684_0091420 3300044712 Bacteria 3756
226 Ga0453684_0091421 3300044712 Bacteria 3756
227 Ga0453684_0201051 3300044712 Bacteria 2323
228 Ga0453684_0280631 3300044712 Bacteria 1900
229 Ga0451576_0000002 3300045051 Bacteria 1670975
230 Ga0451576_0049378 3300045051 Bacteria 4415
231 Ga0451576_0050192 3300045051 Bacteria 4376
232 Ga0451576_0126315 3300045051 Bacteria 2665
233 Ga0495627_020755 3300046453 Bacteria 2186
234 Ga0495629_0000011 3300046459 Bacteria 268675
235 Ga0495638_0000026 3300046460 Bacteria 347061
236 Ga0495651_0163613 3300046462 Bacteria 1592
237 Ga0495650_0000231 3300046471 Bacteria 113969
238 Ga0495650_0021584 3300046471 Bacteria 3107
239 Ga0495585_0000037 3300046492 Bacteria 133335
240 Ga0495585_0001133 3300046492 Bacteria 21876
241 Ga0495583_0019511 3300046506 Bacteria 3537
242 Ga0495583_0075335 3300046506 Bacteria 1476
243 Ga0495606_0000060 3300046507 Bacteria 185907
244 Ga0495606_0015512 3300046507 Bacteria 5864
245 Ga0495606_0019314 3300046507 Bacteria 5076
246 Ga0495610_0000129 3300046512 Bacteria 83051
247 Ga0495610_0000751 3300046512 Bacteria 30621
248 Ga0495610_0004381 3300046512 Bacteria 10458
249 Ga0495616_0002278 3300046513 Bacteria 12835
250 Ga0495616_0010131 3300046513 Bacteria 5470
251 Ga0495631_0001037 3300046518 Bacteria 17230
252 Ga0495637_0023168 3300046520 Bacteria 2826
253 Ga0495644_0010092 3300046523 Bacteria 3638
254 Ga0495666_0001280 3300046526 Bacteria 12186
255 Ga0495652_0134095 3300046529 Bacteria 1956
256 Ga0495586_0001350 3300046535 Bacteria 13620
257 Ga0495609_0004430 3300046538 Bacteria 7680
258 Ga0495609_0015197 3300046538 Bacteria 3607
259 Ga0495609_0015664 3300046538 Bacteria 3546
260 Ga0495633_0000015 3300046558 Bacteria 254484
261 Ga0495633_0004451 3300046558 Bacteria 8910
262 Ga0495633_0005395 3300046558 Bacteria 7834
263 Ga0495668_0000041 3300046616 Bacteria 229462
264 Ga0495625_0000191 3300046660 Bacteria 97363
265 Ga0495625_0001074 3300046660 Bacteria 35469
266 Ga0495625_0005576 3300046660 Bacteria 11413
267 Ga0495625_0071270 3300046660 Bacteria 2439
268 Ga0495625_0071948 3300046660 Bacteria 2425
269 Ga0495625_0112808 3300046660 Bacteria 1857
270 Ga0495661_0002833 3300046665 Bacteria 13136
271 Ga0495661_0057828 3300046665 Bacteria 2313
272 Ga0495649_0000061 3300046694 Bacteria 97338
273 Ga0495660_0022764 3300046810 Bacteria 3575
274 Ga0495672_0025765 3300047320 Bacteria 3759
275 Ga0495676_0011411 3300047321 Bacteria 8020
276 Ga0495683_0015934 3300047323 Bacteria 3904
277 Ga0495687_000570 3300047443 Bacteria 43484
278 Ga0495673_0011433 3300047469 Bacteria 4772
279 Ga0495686_0000679 3300047472 Bacteria 46024
280 Ga0495686_0006807 3300047472 Bacteria 8675
281 Ga0496115_0096387 3300048918 Bacteria 2422
282 Ga0496122_0010569 3300048925 Bacteria 9484
283 Ga0496123_0000777 3300048926 Bacteria 51679
284 Ga0495678_017094 3300049459 Bacteria 3296
285 Ga0501315_003371 3300049531 Bacteria 1593
286 Ga0501034_0000002 3300049571 Bacteria 565510
287 Ga0501036_0044228 3300049572 Bacteria 3772
288 Ga0501037_0027353 3300049573 Bacteria 4213
289 Ga0501048_0074241 3300049582 Bacteria 2400
290 Ga0501217_022154 3300049661 Bacteria 1505
291 Ga0501236_000548 3300049670 Bacteria 4220
292 Ga0501238_003536 3300049671 Bacteria 1923
293 Ga0501242_003786 3300049674 Bacteria 1652
294 Ga0501257_000642 3300049686 Bacteria 6950
295 Ga0501241_006710 3300049758 Bacteria 2114
296 Ga0501264_000950 3300049761 Bacteria 3601
297 nmdc:mga0k408_1014_c1 3300050493 Bacteria 15426
298 nmdc:mga0k408_31_c1 3300050493 Bacteria 85612
299 Ga0500651_0000058 3300053093 Bacteria 72493
300 Ga0500608_000440 3300053122 Bacteria 15676
301 Ga0500618_000016 3300053125 Bacteria 164049
302 Ga0500618_032078 3300053125 Bacteria 1230
303 Ga0500604_0002355 3300053151 Bacteria 5173
304 Ga0500616_0002606 3300053153 Bacteria 14749
305 Ga0500616_0025459 3300053153 Bacteria 3282
306 Ga0500616_0061962 3300053153 Bacteria 1934
307 Ga0500622_0000163 3300053156 Bacteria 70679
308 Ga0500622_0000895 3300053156 Bacteria 25374
309 Ga0500622_0003011 3300053156 Bacteria 11645
310 Ga0500622_0010132 3300053156 Bacteria 5187
311 Ga0500634_0055997 3300053161 Bacteria 2108
312 2522549155 2522125168 Bacteria 7376607
313 2586206984 2585427687 Bacteria 5544917
314 2599481422 2599185184 Bacteria 6430550
315 2738756037 2738541283 Bacteria 7222293
316 2738763339 2738541284 Bacteria 5199923
317 2738854592 2738541302 Bacteria 5944758
318 2739304129 2738543023 Bacteria 6767879
319 2739587103 2739367651 Bacteria 6359826
320 2739615201 2739367656 Bacteria 5152243
321 2739645673 2739367663 Bacteria 5040914
322 2776616056 2775506987 Bacteria 5373360
323 2819547568 2818991437 Bacteria 5805520
324 2842726581 2842722452 Bacteria 6263924
325 2842911425 2842909656 Bacteria 6185908
326 2849284229 2849281842 Bacteria 6065644
327 2852627066 2852623160 Bacteria 4376875
328 2852630699 2852627209 Bacteria 5896285
329 2857627834 2857627736 Bacteria 5625397
330 2884935200 2884933994 Bacteria 4535041
331 2890807088 2890804823 Bacteria 3717572
332 2902050047 2902048731 Bacteria 4976191
333 2904449004 2904445276 Bacteria 5310396
334 2910246231 2910245624 Bacteria 6935613
335 2911139683 2911138879 Bacteria 5811561
336 2919190656 2919186247 Bacteria 6244071
337 2919443057 2919437846 Bacteria 6199444
338 2928083283 2928078545 Bacteria 6534839
339 2928152745 2928147474 Bacteria 6512076
340 2932088293 2932082852 Bacteria 6563563
341 2939669134 2939664404 Bacteria 6364494
342 2946003118 2945997725 Bacteria 6404843
343 2954019977 2954016120 Bacteria 6446024
344 2977234015 2977232053 Bacteria 5485925
345 Ga0500616_0000043
346 JGI24736J21556_1003634
347 JGI24739J22299_10019994
348 JGI24737J22298_10000060
349 JGI24735J21928_10000032
350 JGI25152J39213_1000064
351 JGI25150J39212_1000004
352 JGI25151J46595_10000002
353 JGI25165J46597_1000742
354 JGI25153J46596_10000037
355 rootH1_10004943
356 rootH2_10009361
357 rootH2_10012611
358 rootH2_10056807
359 rootH2_10172198
360 rootL2_10184165
361 rootH1_10010623
362 rootH1_10012646
363 rootH1_10027403
364 rootH1_10037602
365 rootH1_10128349
366 Ga0055536_1000006
367 Ga0055531_10000868
368 Ga0058863_10008894
369 Ga0058861_11827112
370 Ga0058862_10143705
371 Ga0065165_1000176
372 Ga0065165_1001313
373 Ga0065714_10003510
374 Ga0065714_10006750
375 Ga0065714_10013705
376 Ga0065714_10065068
377 Ga0065714_10065706
378 Ga0065714_10100956
379 Ga0065704_10000273
380 Ga0065704_10090701
381 Ga0070658_10000008
382 Ga0070680_100005673
383 Ga0070660_100004582
384 Ga0070660_100008013
385 Ga0070663_100030150
386 Ga0070662_100000090
387 Ga0070681_10019337
388 Ga0070679_100019798
389 Ga0068853_100214069
390 Ga0070665_100000118
391 Ga0068855_100000049
392 Ga0068855_100000155
393 Ga0068855_100032317
394 Ga0068854_100163732
395 Ga0068856_100001430
396 Ga0068856_100007465
397 Ga0068856_100007533
398 Ga0068851_10000057
399 Ga0068863_100233134
400 Ga0068860_100057443
401 Ga0081455_10008205
402 Ga0075366_10000135
403 Ga0075366_10000556
404 Ga0068865_100002736
405 Ga0105244_10008757
406 Ga0105240_10002021
407 Ga0105240_10054425
408 Ga0105240_10084083
409 Ga0111539_10149423
410 Ga0105245_10072888
411 Ga0105241_10000804
412 Ga0105237_10000394
413 Ga0105237_10001504
414 Ga0105237_10003766
415 Ga0105237_10010052
416 Ga0105238_10040227
417 Ga0099796_10009344
418 Ga0105239_10000049
419 Ga0105239_10000166
420 Ga0105239_10012380
421 Ga0105239_10017420
422 Ga0105239_10020179
423 Ga0105239_10247045
424 Ga0157373_10000086
425 Ga0157373_10001842
426 Ga0157373_10008022
427 Ga0157371_10000027
428 Ga0157371_10007301
429 Ga0157371_10011057
430 Ga0157370_10002773
431 Ga0157370_10003748
432 Ga0157370_10060967
433 Ga0157369_10000053
434 Ga0157369_10003605
435 Ga0157374_10000301
436 Ga0157374_10040216
437 Ga0163162_10000012
438 Ga0163162_10000078
439 Ga0163162_10001704
440 Ga0163162_10157883
441 Ga0157372_10000039
442 Ga0157372_10002381
443 Ga0157372_10025844
444 Ga0157380_10000001
445 Ga0157380_10000314
446 Ga0182008_10000020
447 Ga0182008_10000053
448 Ga0182008_10000336
449 Ga0182008_10009526
450 Ga0182008_10059651
451 Ga0182006_1001480
452 Ga0182006_1001934
453 Ga0182006_1002073
454 Ga0182006_1002254
455 Ga0182007_10000005
456 Ga0182007_10020801
457 Ga0182007_10024589
458 Ga0183373_1007
459 Ga0163161_10022159
460 Ga0163161_10069997
461 Ga0206351_10407532
462 Ga0207427_100122
463 Ga0209437_100048
464 Ga0209437_100102
465 Ga0207425_1000003
466 Ga0209129_1000022
467 Ga0209233_1000029
468 Ga0209676_1000039
469 Ga0209676_1000485
470 Ga0209025_1000007
471 Ga0209758_1000012
472 Ga0209050_1000033
473 Ga0209050_1004236
474 Ga0209050_1035231
475 Ga0209257_1000006
476 Ga0207656_10000048
477 Ga0207655_1022845
478 Ga0207647_10000018
479 Ga0207705_10000026
480 Ga0207654_10001026
481 Ga0207654_10017176
482 Ga0207707_10013779
483 Ga0207695_10000142
484 Ga0207695_10014909
485 Ga0207695_10015835
486 Ga0207695_10082084
487 Ga0207671_10000110
488 Ga0207671_10001102
489 Ga0207671_10001959
490 Ga0207671_10019924
491 Ga0207671_10022720
492 Ga0207657_10023154
493 Ga0207652_10003461
494 Ga0207652_10045181
495 Ga0207687_10040078
496 Ga0207706_10005255
497 Ga0207704_10000047
498 Ga0207679_10085714
499 Ga0207667_10000015
500 Ga0207667_10012483
501 Ga0207667_10026801
502 Ga0207667_10064910
503 Ga0207667_10098100
504 Ga0207667_10286904
505 Ga0207678_10047328
506 Ga0207702_10002682
507 Ga0207702_10019319
508 Ga0207702_10069316
509 Ga0207702_10084771
510 Ga0207676_10136556
511 Ga0207698_10010495
512 Ga0268266_10000121
513 Ga0268264_10039110
514 Ga0307517_10000198
515 Ga0307515_10000001
516 Ga0307515_10000003
517 Ga0307515_10001436
518 Ga0307515_10056048
519 Ga0307515_10154315
520 Ga0265327_10014797
521 Ga0265327_10067597
522 Ga0307509_10123427
523 Ga0307408_100000396
524 Ga0307408_100000464
525 Ga0307408_100000560
526 Ga0307408_100001326
527 Ga0307408_100028499
528 Ga0265314_10009334
529 Ga0307405_10019142
530 Ga0307405_10056208
531 Ga0307405_10058318
532 Ga0307407_10000001
533 Ga0307412_10000001
534 Ga0307409_100080694
535 Ga0307416_100000008
536 Ga0307416_100000457
537 Ga0307414_10000414
538 Ga0307414_10000470
539 Ga0307414_10002491
540 Ga0307414_10017713
541 Ga0307415_100096313
542 Ga0307507_10000099
543 Ga0307510_10005580
544 Ga0373943_0023571
545 Ga0373927_0013797
546 Ga0373937_0252335
547 Ga0395899_0000024
548 Ga0395899_0000027
549 Ga0395899_0019564
550 Ga0395900_0001518
551 Ga0395900_0006443
552 Ga0395905_0000327
553 Ga0395901_0000921
554 Ga0395901_0008911
555 Ga0439457_009459
556 Ga0439457_010721
557 Ga0439434_0007986
558 Ga0451577_0000435
559 Ga0451577_0053529
560 Ga0451577_0054835
561 Ga0451577_0109438
562 Ga0451577_0120114
563 Ga0466969_0013019
564 Ga0453683_0000032
565 Ga0453683_0123681
566 Ga0453684_0043918
567 Ga0453684_0086754
568 Ga0453684_0091420
569 Ga0453684_0091421
570 Ga0453684_0201051
571 Ga0453684_0280631
572 Ga0451576_0000002
573 Ga0451576_0049378
574 Ga0451576_0050192
575 Ga0451576_0126315
576 Ga0495627_020755
577 Ga0495629_0000011
578 Ga0495638_0000026
579 Ga0495651_0163613
580 Ga0495650_0000231
581 Ga0495650_0021584
582 Ga0495585_0000037
583 Ga0495585_0001133
584 Ga0495583_0019511
585 Ga0495583_0075335
586 Ga0495606_0000060
587 Ga0495606_0015512
588 Ga0495606_0019314
589 Ga0495610_0000129
590 Ga0495610_0000751
591 Ga0495610_0004381
592 Ga0495616_0002278
593 Ga0495616_0010131
594 Ga0495631_0001037
595 Ga0495637_0023168
596 Ga0495644_0010092
597 Ga0495666_0001280
598 Ga0495652_0134095
599 Ga0495586_0001350
600 Ga0495609_0004430
601 Ga0495609_0015197
602 Ga0495609_0015664
603 Ga0495633_0000015
604 Ga0495633_0004451
605 Ga0495633_0005395
606 Ga0495668_0000041
607 Ga0495625_0000191
608 Ga0495625_0001074
609 Ga0495625_0005576
610 Ga0495625_0071270
611 Ga0495625_0071948
612 Ga0495625_0112808
613 Ga0495661_0002833
614 Ga0495661_0057828
615 Ga0495649_0000061
616 Ga0495660_0022764
617 Ga0495672_0025765
618 Ga0495676_0011411
619 Ga0495683_0015934
620 Ga0495687_000570
621 Ga0495673_0011433
622 Ga0495686_0000679
623 Ga0495686_0006807
624 Ga0496115_0096387
625 Ga0496122_0010569
626 Ga0496123_0000777
627 Ga0495678_017094
628 Ga0501315_003371
629 Ga0501034_0000002
630 Ga0501036_0044228
631 Ga0501037_0027353
632 Ga0501048_0074241
633 Ga0501217_022154
634 Ga0501236_000548
635 Ga0501238_003536
636 Ga0501242_003786
637 Ga0501257_000642
638 Ga0501241_006710
639 Ga0501264_000950
640 nmdc:mga0k408_1014_c1
641 nmdc:mga0k408_31_c1
642 Ga0500651_0000058
643 Ga0500608_000440
644 Ga0500618_000016
645 Ga0500618_032078
646 Ga0500604_0002355
647 Ga0500616_0002606
648 Ga0500616_0025459
649 Ga0500616_0061962
650 Ga0500622_0000163
651 Ga0500622_0000895
652 Ga0500622_0003011
653 Ga0500622_0010132
654 Ga0500634_0055997
655 2522549155
656 2586206984
657 2599481422
658 2738756037
659 2738763339
660 2738854592
661 2739304129
662 2739587103
663 2739615201
664 2739645673
665 2776616056
666 2819547568
667 2842726581
668 2842911425
669 2849284229
670 2852627066
671 2852630699
672 2857627834
673 2884935200
674 2890807088
675 2902050047
676 2904449004
677 2910246231
678 2911139683
679 2919190656
680 2919443057
681 2928083283
682 2928152745
683 2932088293
684 2939669134
685 2946003118
686 2954019977
687 2977234015

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF01512

Complex1_51K

Respiratory-chain NADH dehydrogenase 51 Kd subunit

68

240

0.97

PF10589

NADH_4Fe-4S

NADH-ubiquinone oxidoreductase-F iron-sulfur binding region

363

447

0.97

Structural Annotation

Top 5 Hits

ID Description Score Start End
7p61-assembly1.cif.gz_F complex i from e. coli, ddm-purified, with nadh, resting state 0.906 17 413
6vw7-assembly1.cif.gz_B formate dehydrogenase fdsabg subcomplex fdsbg from c. necator - nadh bound 0.903 2 410
8oh5-assembly1.cif.gz_B cryo-em structure of the electron bifurcating transhydrogenase stnabc complex from sporomusa ovata (state 2) 0.9007 2 413
6g2j-assembly1.cif.gz_F mouse mitochondrial complex i in the active state 0.8992 4 418
7p8n-assembly1.cif.gz_b tmhydabc- t. maritima hydrogenase with bridge closed 0.8984 2 414
ID Description Score Start End Superfamily
2fugA02 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;NADH-ubiquinone oxidoreductase 51kDa subunit 0.8809 50 227 3.40.50.11540
2fugA02 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;NADH-ubiquinone oxidoreductase 51kDa subunit 0.8717 50 227 3.40.50.11540
af_P9WIV7_336_431_1.20.1440.230 Mainly Alpha;Up-down Bundle;de novo design (two linked rop proteins);NADH-ubiquinone oxidoreductase 51kDa subunit, iron-sulphur binding domain 0.8525 325 414 1.20.1440.230
af_O94500_78_261_3.40.50.11540 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;NADH-ubiquinone oxidoreductase 51kDa subunit 0.8412 50 226 3.40.50.11540
af_A1ZAW7_585_680_1.20.1440.230 Mainly Alpha;Up-down Bundle;de novo design (two linked rop proteins);NADH-ubiquinone oxidoreductase 51kDa subunit, iron-sulphur binding domain 0.836 326 418 1.20.1440.230
ID Description Score Start End GO Terms
AF-A0A7X9KPD5-F1-model_v4 NADH-quinone oxidoreductase subunit F (EC 1.6.5.11) 0.9853 1 161 GO:0016491
GO:0046872
GO:0051539
AF-A0A7X9KPD5-F1-model_v4 NADH-quinone oxidoreductase subunit F (EC 1.6.5.11) 0.9792 1 161 GO:0016491
GO:0046872
GO:0051539
AF-A0A6B3C9I9-F1-model_v4 NADH-quinone oxidoreductase subunit F (EC 1.6.5.11) 0.9665 9 142 GO:0016491
GO:0046872
GO:0048038
GO:0051539
AF-A0A3N9NRM1-F1-model_v4 NADH-quinone oxidoreductase subunit F (EC 1.6.5.11) 0.964 17 148 GO:0016491
GO:0046872
GO:0048038
GO:0051539
AF-A0A4Q3Q8W7-F1-model_v4 deleted 0.9635 1 171

Map