F416082

General Info

Members Datasets Scaffolds Average Seq Length
344 231 688 312

Family's Representative Sequence

Representative Sequence 3300044712|Ga0453684_0218136|Ga0453684_0218136_960_2012
Length 350
Sequence MPLAAANTPAQPPALPRYLALAGPTASGKTAAALAIARQHAVEIISVDSALVYRGMDIGTAKPTAAELAAVPHHLINIRDPLHAYSAAEFVADARALMADITARGKLPLLVGGTMLYFKALRDGLDDMPKADPAVRAVIEQEAAQKGWPALHAELAQVDPVTAARLAPADSQRIARALEVYRISGQPMASFHTTKNIATCAGNTLATDQNGSTHPDQAMLISLEPQDRAWLHQRIAQRFDAMLADGFVDEVKALRARGDLHPDLPAMRCVGYRQAWDYLDALQTQAAAKPGGAALLATLRDTGIFATRQLAKRQITWLRSMPDRRVVACDAPDALAQVLALARTFITSAA

Samples

Sample ID Description Type Environment
1 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
2 3300002704 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mLB Metagenome Unclassified
3 3300002705 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mMS Metagenome Unclassified
4 3300002738 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mTSA Metagenome Unclassified
5 3300002741 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mCL Metagenome Unclassified
6 3300002774 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mTSA Metagenome Endosphere
7 3300002987 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mLB Metagenome Endosphere
8 3300003187 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mLB Metagenome Endosphere
9 3300003322 Sugarcane root Sample L2 Metagenome Unclassified
10 3300003354 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMS Metagenome Endosphere
11 3300003374 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMF Metagenome Endosphere
12 3300003763 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mCL_r2 Metagenome Endosphere
13 3300003771 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMF_r2 Metagenome Endosphere
14 3300003773 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mTSA_r2 Metagenome Endosphere
15 3300003775 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mCL_r2 Metagenome Endosphere
16 3300003781 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mLB_r2 Metagenome Endosphere
17 3300003784 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mLB_r2 Metagenome Endosphere
18 3300003790 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMS_r2 Metagenome Endosphere
19 3300003791 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 Metagenome Endosphere
20 3300003792 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mMS_r2 Metagenome Endosphere
21 3300003794 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 Metagenome Endosphere
22 3300004625 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mMF_r2 Metagenome Endosphere
23 3300005262 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMF (version 2) (version 3) Metagenome Endosphere
24 3300005295 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL3 v2 (version 2) Metagenome Rhizosphere
25 3300005327 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG Metagenome Rhizosphere
26 3300005339 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG Metagenome Rhizosphere
27 3300005353 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG Metagenome Rhizosphere
28 3300005355 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG Metagenome Rhizosphere
29 3300005367 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG Metagenome Rhizosphere
30 3300005530 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG Metagenome Rhizosphere
31 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
32 3300005577 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 Metagenome Rhizosphere
33 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
34 3300005719 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 Metagenome Rhizosphere
35 3300005841 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 Metagenome Rhizosphere
36 3300005842 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 Metagenome Rhizosphere
37 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
38 3300005844 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 Metagenome Rhizosphere
39 3300006048 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-3 Metagenome Endosphere
40 3300006195 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 Metagenome Endosphere
41 3300006353 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 Metagenome Endosphere
42 3300006846 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 Metagenome Rhizosphere
43 3300009036 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-4 metaG Metagenome Rhizosphere
44 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
45 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
46 3300009176 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG Metagenome Rhizosphere
47 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
48 3300009553 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG Metagenome Rhizosphere
49 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
50 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
51 3300014326 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG Metagenome Rhizosphere
52 3300014497 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-129_1 metaG Metagenome Rhizosphere
53 3300014968 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG Metagenome Rhizosphere
54 3300015261 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-104_1 MetaG Metagenome Rhizosphere
55 3300015262 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-113_1 MetaG Metagenome Rhizosphere
56 3300015265 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-103_1 MetaG Metagenome Rhizosphere
57 3300015683 Rizhosphere microbial communities from mature sugarcane plants Campinas, Sao Paulo, Brazil - 001.1_F04 Metagenome Rhizosphere
58 3300021361 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2 Metagenome Rhizosphere
59 3300025206 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mLB (SPAdes) (version 2) Metagenome Unclassified
60 3300025245 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mTSA (SPAdes) (version 3) Metagenome Endosphere
61 3300025246 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mTSA (SPAdes) (version 2) Metagenome Unclassified
62 3300025250 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mCL (SPAdes) (version 2) Metagenome Unclassified
63 3300025256 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mMS (SPAdes) (version 2) Metagenome Unclassified
64 3300025263 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mTSA_r2 (SPAdes) (version 3) Metagenome Endosphere
65 3300025272 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
66 3300025273 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMS_r2 (SPAdes) (version 3) Metagenome Endosphere
67 3300025284 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mLB (SPAdes) (version 2) Metagenome Endosphere
68 3300025291 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mLB_r2 (SPAdes) (version 3) Metagenome Endosphere
69 3300025292 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mLB_r2 (SPAdes) (version 2) Metagenome Endosphere
70 3300025294 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mLB (SPAdes) (version 2) Metagenome Endosphere
71 3300025295 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMF_r2 (SPAdes) (version 3) Metagenome Endosphere
72 3300025297 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF (SPAdes) (version 2) Metagenome Endosphere
73 3300025298 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 (SPAdes) (version 2) Metagenome Endosphere
74 3300025299 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mCL_r2 (SPAdes) (version 3) Metagenome Endosphere
75 3300025302 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMS (SPAdes) (version 2) Metagenome Endosphere
76 3300025303 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mMS_r2 (SPAdes) (version 2) Metagenome Endosphere
77 3300025304 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
78 3300025909 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
79 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
80 3300025919 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
81 3300025921 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
82 3300025923 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
83 3300025924 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
84 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
85 3300025986 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
86 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
87 3300026095 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes) (version 2) Metagenome Rhizosphere
88 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
89 3300026118 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes) (version 2) Metagenome Rhizosphere
90 3300027876 Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M3 S PM (SPAdes) (version 2) Metagenome Rhizosphere
91 3300027907 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes) (version 3) Metagenome Rhizosphere
92 3300028380 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes) (version 2) Metagenome Rhizosphere
93 3300028786 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 23_EM Metagenome Unclassified
94 3300028794 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM Metagenome Unclassified
95 3300031238 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-26 metaG Metagenome Rhizosphere
96 3300031251 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-21 metaG Metagenome Rhizosphere
97 3300031456 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 15_EM Metagenome Unclassified
98 3300031507 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 10_EM Metagenome Unclassified
99 3300031548 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3 Metagenome Rhizosphere
100 3300031616 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 9_EM Metagenome Unclassified
101 3300031727 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_050615r3r5 Metagenome Rhizosphere
102 3300031731 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-1 Metagenome Rhizosphere
103 3300031838 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 25_EM Metagenome Unclassified
104 3300031911 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1 Metagenome Rhizosphere
105 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
106 3300032004 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3 Metagenome Rhizosphere
107 3300032005 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-1 Metagenome Rhizosphere
108 3300033180 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 12_EM Metagenome Unclassified
109 3300034817 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_N_1 Metagenome Rhizosphere
110 3300035088 Populus rhizosphere microbial communities from soil in West Virginia, United States - WV94_WV_NoN_4 Metagenome Rhizosphere
111 3300035114 Populus rhizosphere microbial communities from soil in West Virginia, United States - WV94_WV_NoN_3 Metagenome Rhizosphere
112 3300035119 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_N_4 Metagenome Rhizosphere
113 3300035121 Populus rhizosphere microbial communities from soil in West Virginia, United States - WV94_WV_N_3 Metagenome Rhizosphere
114 3300037312 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_B SG_2 Metagenome Rhizosphere
115 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
116 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
117 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
118 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
119 3300039447 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2 v2 Metagenome Rhizosphere
120 3300041404 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0216DE14Z070717_5272 Metagenome Rhizosphere
121 3300041407 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0216DE14Z080117_5416 Metagenome Rhizosphere
122 3300041410 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0116DE14Z082817_5596 Metagenome Rhizosphere
123 3300041411 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0409DE14Z080117_6708 Metagenome Rhizosphere
124 3300041486 Perennial ryegrass root microbial community from Lincoln, Canterbury, New Zealand - RGR18_9 MetaG Metagenome Rhizoplane
125 3300041997 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0317DE14Z082817_5607 Metagenome Rhizosphere
126 3300041999 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0821WE14Z070717_5297 Metagenome Rhizosphere
127 3300042000 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0512FE14Z081617_5539 Metagenome Rhizosphere
128 3300042002 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0612DE14Z082817_5616 Metagenome Rhizosphere
129 3300042004 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0612WE14Z082817_5619 Metagenome Rhizosphere
130 3300042006 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0612WE14Z080117_5437 Metagenome Rhizosphere
131 3300042007 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0612DE14Z070717_5290 Metagenome Rhizosphere
132 3300042014 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0216WE14Z070717_5275 Metagenome Rhizosphere
133 3300042015 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0503WE14Z070717_5287 Metagenome Rhizosphere
134 3300042120 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0913L_E14_082316_2192 Metagenome Rhizosphere
135 3300042126 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0218F_E14_070516_87 Metagenome Rhizosphere
136 3300042127 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC1030F_E14_070516_91 Metagenome Rhizosphere
137 3300042128 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0117W_E14_070716_123 Metagenome Rhizosphere
138 3300042130 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC1030L_E14_070516_97 Metagenome Rhizosphere
139 3300042435 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0503WE14Z082817_5613 Metagenome Rhizosphere
140 3300042876 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9GH_GED Metagenome Rhizosphere
141 3300044658 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC1R Metagenome Rhizosphere
142 3300044683 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA3R Metagenome Rhizosphere
143 3300044706 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA3R Metagenome Rhizosphere
144 3300044735 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA1R Metagenome Rhizosphere
145 3300044765 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA2R Metagenome Rhizosphere
146 3300045049 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC3R Metagenome Rhizosphere
147 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
148 3300046454 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-198-CL2_38_5 rhizosphere Metagenome Rhizosphere
149 3300046460 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co3_31_37 rhizosphere Metagenome Rhizosphere
150 3300046471 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co3_9_34 rhizosphere Metagenome Rhizosphere
151 3300046491 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co2_41_23 rhizosphere Metagenome Rhizosphere
152 3300046492 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co3_21_57 rhizosphere Metagenome Rhizosphere
153 3300046501 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co3_27_41 rhizosphere Metagenome Rhizosphere
154 3300046506 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co1_30_3 rhizosphere Metagenome Rhizosphere
155 3300046507 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co2_62_14 rhizosphere Metagenome Rhizosphere
156 3300046512 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co2_50_17 rhizosphere Metagenome Rhizosphere
157 3300046513 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-351-Co2_42_17 rhizosphere Metagenome Rhizosphere
158 3300046519 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co2_51_16 rhizosphere Metagenome Rhizosphere
159 3300046522 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 rhizosphere Metagenome Rhizosphere
160 3300046524 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co1_12_9 rhizosphere Metagenome Rhizosphere
161 3300046538 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co1_12_7 rhizosphere Metagenome Rhizosphere
162 3300046539 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co3_13_34 rhizosphere Metagenome Rhizosphere
163 3300046557 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL1_25_34 rhizosphere Metagenome Rhizosphere
164 3300046558 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co3_6_53 rhizosphere Metagenome Rhizosphere
165 3300046615 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-866-Co3_27_48 rhizosphere Metagenome Rhizosphere
166 3300046616 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co1_14_4 rhizosphere Metagenome Rhizosphere
167 3300046648 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co3_15_40 rhizosphere Metagenome Rhizosphere
168 3300046660 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co1_32_7 rhizosphere Metagenome Rhizosphere
169 3300046664 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co1_5_9 rhizosphere Metagenome Rhizosphere
170 3300046665 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co3_16_51 rhizosphere Metagenome Rhizosphere
171 3300046684 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co2_44_8 rhizosphere Metagenome Rhizosphere
172 3300046689 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL2_54_28 rhizosphere Metagenome Rhizosphere
173 3300046691 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co3_14_51 rhizosphere Metagenome Rhizosphere
174 3300046692 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co1_37_5 rhizosphere Metagenome Rhizosphere
175 3300046694 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 rhizosphere Metagenome Rhizosphere
176 3300047469 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co3_31_39 rhizosphere Metagenome Rhizosphere
177 3300047472 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co2_54_22 rhizosphere Metagenome Rhizosphere
178 3300048920 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1e N15 Metagenome Unclassified
179 3300048921 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1f N15 Metagenome Unclassified
180 3300048924 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_3e N15 Metagenome Unclassified
181 3300048925 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8x unlabeled Metagenome Unclassified
182 3300048926 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8y unlabeled Metagenome Unclassified
183 3300048927 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_4e N15 Metagenome Unclassified
184 3300048928 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_5e N15 Metagenome Unclassified
185 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
186 3300049460 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWA-24-3-Co2_41_10 rhizosphere Metagenome Rhizosphere
187 3300049517 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - G24_B_5_control Metagenome Rhizosphere
188 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
189 3300049662 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - F2_A_2_control Metagenome Rhizosphere
190 3300049705 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - C1_A_2_drought Metagenome Rhizosphere
191 3300049758 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - D15_A_3_drought Metagenome Rhizosphere
192 3300050489 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-2 re-annotation Metagenome Endosphere
193 3300050493 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 re-annotation Metagenome Endosphere
194 3300050496 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 re-annotation Metagenome Endosphere
195 3300050509 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 re-annotation Metagenome Rhizosphere
196 3300050511 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation Metagenome Rhizosphere
197 3300053088 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co1_37_5 endosphere Metagenome Endosphere
198 3300053092 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co3_15_40 endosphere Metagenome Endosphere
199 3300053093 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co2_62_24 endosphere Metagenome Endosphere
200 3300053117 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co2_62_25 endosphere Metagenome Endosphere
201 3300053118 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co3_13_34 endosphere Metagenome Endosphere
202 3300053125 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL1_28_5 endosphere Metagenome Endosphere
203 3300053136 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL2_62_7 endosphere Metagenome Endosphere
204 3300053154 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL2_38_7 endosphere Metagenome Endosphere
205 3300053177 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL1_23_5 endosphere Metagenome Endosphere
206 3300053178 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL2_41_30 endosphere Metagenome Endosphere
207 3300053730 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co2_68_28 endosphere Metagenome Endosphere
208 2511231002 Polaromonas sp. CF318 Isolate Rhizosphere
209 2511231003 Herbaspirillum sp. CF444 Isolate Rhizosphere
210 2600255292 Janthinobacterium lividum NFR18 Isolate Rhizoplane
211 2643221544 Pelomonas sp. Root1444 Isolate Unclassified
212 2643221585 Pelomonas sp. Root662 Isolate Unclassified
213 2643221639 Pelomonas sp. Root1217 Isolate Unclassified
214 2643221646 Pelomonas sp. Root1237 Isolate Unclassified
215 2643221656 Pelomonas sp. Root405 Isolate Unclassified
216 2738541297 Duganella sp. GV083 Isolate Unclassified
217 2738541337 Pelomonas sp. BT06 Isolate Unclassified
218 2738541357 Duganella sp. GV053 Isolate Unclassified
219 2738543003 Duganella sp. GV066 Isolate Unclassified
220 2738543026 Duganella sp. GV089 Isolate Unclassified
221 2738543029 Duganella sp. GV039 Isolate Unclassified
222 2821131069 Duganella sp. 1224 Isolate Unclassified
223 2842733646 Variovorax sp. R-72446 Isolate Unclassified
224 2846033681 Chromobacterium sinusclupearum MWU13-2610 Isolate Rhizosphere
225 2857547612 Janthinobacterium sp. R-74502 Isolate Unclassified
226 2857564685 Duganella sp. R-74599 Isolate Unclassified
227 2885080285 Janthinobacterium sp. AD80 Isolate Rhizosphere
228 2885192300 Variovorax sp. MHTC-1 Isolate Rhizosphere
229 2932410948 Janthinobacterium lividum 2829 Isolate Rhizosphere
230 2932416698 Janthinobacterium lividum 2830 Isolate Rhizosphere
231 2939631187 Ottowia thiooxydans 2709 Isolate Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 93.02
Metatranscriptomes 0
Isolates 6.98

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 25.29
Nodule 0
Rhizoplane 0.58
Rhizosphere 57.56
Stem 0
Stem Tuber 0
Unclassified 0

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0453684_0218136 3300044712 Bacteria 2211
2 JGI25155J39150_1000051 3300002704 Bacteria 76772
3 JGI25155J39150_1000172 3300002704 Bacteria 28433
4 JGI25155J39150_1000682 3300002704 Bacteria 6359
5 JGI25156J39149_1000155 3300002705 Bacteria 50271
6 JGI25154J39366_1000170 3300002738 Bacteria 50275
7 JGI25154J39366_1000544 3300002738 Bacteria 18751
8 JGI25157J39369_1000091 3300002741 Bacteria 76837
9 JGI25150J39212_1003037 3300002774 Bacteria 4028
10 JGI25159J45721_1000098 3300002987 Bacteria 41673
11 JGI25159J45721_1001780 3300002987 Bacteria 8635
12 JGI25151J46595_10002443 3300003187 Bacteria 11187
13 JGI25151J46595_10013815 3300003187 Bacteria 3622
14 JGI25151J46595_10030562 3300003187 Bacteria 2116
15 rootL2_10029821 3300003322 Bacteria 4787
16 rootL2_10108928 3300003322 Bacteria 2150
17 JGI25160J50197_1000067 3300003354 Bacteria 113436
18 JGI25161J50226_1000035 3300003374 Bacteria 133666
19 Ga0055529_1000127 3300003763 Bacteria 109148
20 Ga0055526_1002517 3300003771 Bacteria 12330
21 Ga0055526_1004041 3300003771 Bacteria 9014
22 Ga0055526_1005035 3300003771 Bacteria 7724
23 Ga0055537_1000156 3300003773 Bacteria 51559
24 Ga0055537_1000187 3300003773 Bacteria 46437
25 Ga0055537_1000223 3300003773 Bacteria 41876
26 Ga0055537_1000427 3300003773 Bacteria 27480
27 Ga0055537_1008033 3300003773 Bacteria 2473
28 Ga0055524_1000006 3300003775 Bacteria 324702
29 Ga0055536_1009386 3300003781 Bacteria 4046
30 Ga0055534_1000230 3300003784 Bacteria 40350
31 Ga0055534_1000925 3300003784 Bacteria 13262
32 Ga0055528_1001059 3300003790 Bacteria 18161
33 Ga0055530_10000154 3300003791 Bacteria 61878
34 Ga0055530_10017025 3300003791 Bacteria 2291
35 Ga0055540_1000005 3300003792 Bacteria 378126
36 Ga0055531_10000078 3300003794 Bacteria 105599
37 Ga0055531_10014102 3300003794 Bacteria 3628
38 Ga0055543_1000775 3300004625 Bacteria 15884
39 Ga0065165_1006745 3300005262 Bacteria 5885
40 Ga0065165_1041281 3300005262 Bacteria 1370
41 Ga0065165_1049648 3300005262 Bacteria 1199
42 Ga0065707_10089557 3300005295 Bacteria 4339
43 Ga0070658_10083693 3300005327 Bacteria 2623
44 Ga0070660_100020685 3300005339 Bacteria 4841
45 Ga0070669_100080036 3300005353 Bacteria 2431
46 Ga0070671_100003639 3300005355 Bacteria 12069
47 Ga0070667_100545575 3300005367 Bacteria 1065
48 Ga0070679_100247777 3300005530 Bacteria 1738
49 Ga0068855_100000592 3300005563 Bacteria 44394
50 Ga0068855_100061494 3300005563 Bacteria 4388
51 Ga0068857_100222316 3300005577 Bacteria 1725
52 Ga0068856_100107104 3300005614 Bacteria 2790
53 Ga0068856_100125945 3300005614 Bacteria 2565
54 Ga0068861_100010140 3300005719 Bacteria 6533
55 Ga0068863_100055765 3300005841 Bacteria 3742
56 Ga0068858_100035828 3300005842 Bacteria 4602
57 Ga0068860_100247614 3300005843 Bacteria 1735
58 Ga0068862_100063880 3300005844 Bacteria 3168
59 Ga0068862_100151351 3300005844 Bacteria 2065
60 Ga0075363_100013504 3300006048 Bacteria 3962
61 Ga0075366_10009838 3300006195 Bacteria 5348
62 Ga0075366_10020004 3300006195 Bacteria 3881
63 Ga0075370_10013574 3300006353 Bacteria 4334
64 Ga0075430_100008736 3300006846 Bacteria 8550
65 Ga0105244_10002932 3300009036 Bacteria 12590
66 Ga0105240_10065605 3300009093 Bacteria 4506
67 Ga0105240_10078652 3300009093 Bacteria 4061
68 Ga0111539_10021093 3300009094 Bacteria 8022
69 Ga0105242_10222061 3300009176 Bacteria 1689
70 Ga0105238_10035904 3300009551 Bacteria 5039
71 Ga0105238_10285029 3300009551 Bacteria 1634
72 Ga0105249_10016323 3300009553 Bacteria 6588
73 Ga0163162_10781354 3300013306 Bacteria 1073
74 Ga0157375_10164148 3300013308 Bacteria 2365
75 Ga0157380_10001963 3300014326 Bacteria 13692
76 Ga0182008_10002758 3300014497 Bacteria 10894
77 Ga0157379_10482548 3300014968 Bacteria 1147
78 Ga0182006_1000014 3300015261 Bacteria 340159
79 Ga0182007_10000686 3300015262 Bacteria 19385
80 Ga0182005_1000014 3300015265 Bacteria 389763
81 Ga0183362_10003 3300015683 Bacteria 977584
82 Ga0213872_10000002 3300021361 Bacteria 554092
83 Ga0213872_10000079 3300021361 Bacteria 89092
84 Ga0213872_10000437 3300021361 Bacteria 34175
85 Ga0213872_10064802 3300021361 Bacteria 1650
86 Ga0213872_10089264 3300021361 Bacteria 1380
87 Ga0209435_100062 3300025206 Bacteria 77288
88 Ga0207425_1001551 3300025245 Bacteria 9374
89 Ga0207425_1006170 3300025245 Bacteria 3309
90 Ga0209646_1000001 3300025246 Bacteria 3092932
91 Ga0209646_1000052 3300025246 Bacteria 286370
92 Ga0209026_1000224 3300025250 Bacteria 77298
93 Ga0209026_1003959 3300025250 Bacteria 4625
94 Ga0209759_1000013 3300025256 Bacteria 399300
95 Ga0209759_1000514 3300025256 Bacteria 41893
96 Ga0209565_1000006 3300025263 Bacteria 897294
97 Ga0209565_1000246 3300025263 Bacteria 57871
98 Ga0209565_1000345 3300025263 Bacteria 40893
99 Ga0209565_1003658 3300025263 Bacteria 4892
100 Ga0209455_1000051 3300025272 Bacteria 369818
101 Ga0209673_1000004 3300025273 Bacteria 896155
102 Ga0209673_1000043 3300025273 Bacteria 291503
103 Ga0209130_1000241 3300025284 Bacteria 70093
104 Ga0209130_1000623 3300025284 Bacteria 33778
105 Ga0209675_1000006 3300025291 Bacteria 732267
106 Ga0209675_1000309 3300025291 Bacteria 44113
107 Ga0209675_1001121 3300025291 Bacteria 16339
108 Ga0209676_1000007 3300025292 Bacteria 1029371
109 Ga0209676_1007229 3300025292 Bacteria 5281
110 Ga0209025_1001588 3300025294 Bacteria 28622
111 Ga0209025_1003916 3300025294 Bacteria 13410
112 Ga0209025_1004522 3300025294 Bacteria 12001
113 Ga0209564_1000064 3300025295 Bacteria 316431
114 Ga0209564_1000285 3300025295 Bacteria 102585
115 Ga0209564_1001560 3300025295 Bacteria 22537
116 Ga0209564_1004906 3300025295 Bacteria 7928
117 Ga0209758_1016293 3300025297 Bacteria 3785
118 Ga0209050_1000003 3300025298 Bacteria 1609245
119 Ga0209050_1013526 3300025298 Bacteria 3614
120 Ga0209050_1015141 3300025298 Bacteria 3264
121 Ga0209256_1000001 3300025299 Bacteria 2166974
122 Ga0209256_1000179 3300025299 Bacteria 123865
123 Ga0207426_1000247 3300025302 Bacteria 119659
124 Ga0207426_1002083 3300025302 Bacteria 13829
125 Ga0209051_1000003 3300025303 Bacteria 1609245
126 Ga0209051_1007166 3300025303 Bacteria 6141
127 Ga0209257_1000020 3300025304 Bacteria 773356
128 Ga0209257_1000032 3300025304 Bacteria 680354
129 Ga0209257_1005213 3300025304 Bacteria 9318
130 Ga0207705_10007076 3300025909 Bacteria 8275
131 Ga0207695_10263561 3300025913 Bacteria 1620
132 Ga0207657_10043481 3300025919 Bacteria 3956
133 Ga0207652_10213941 3300025921 Bacteria 1736
134 Ga0207681_10070175 3300025923 Bacteria 2439
135 Ga0207694_10132095 3300025924 Bacteria 2002
136 Ga0207667_10018033 3300025949 Bacteria 7928
137 Ga0207658_10483146 3300025986 Bacteria 1101
138 Ga0207702_10031178 3300026078 Bacteria 4443
139 Ga0207702_10073154 3300026078 Bacteria 2955
140 Ga0207676_10090845 3300026095 Bacteria 2507
141 Ga0207674_10332299 3300026116 Bacteria 1470
142 Ga0207675_100017318 3300026118 Bacteria 6728
143 Ga0209974_10020853 3300027876 Bacteria 2172
144 Ga0207428_10011848 3300027907 Bacteria 7683
145 Ga0268265_10032318 3300028380 Bacteria 3791
146 Ga0307517_10000644 3300028786 Bacteria 59773
147 Ga0307515_10000195 3300028794 Bacteria 148138
148 Ga0307515_10000991 3300028794 Bacteria 64898
149 Ga0307515_10013057 3300028794 Bacteria 15557
150 Ga0265332_10000014 3300031238 Bacteria 249035
151 Ga0265327_10000425 3300031251 Bacteria 77143
152 Ga0307513_10000004 3300031456 Bacteria 558931
153 Ga0307513_10000054 3300031456 Bacteria 148887
154 Ga0307513_10123783 3300031456 Bacteria 2546
155 Ga0307509_10000041 3300031507 Bacteria 182302
156 Ga0307408_100000064 3300031548 Bacteria 122509
157 Ga0307408_100000521 3300031548 Bacteria 33246
158 Ga0307508_10001442 3300031616 Bacteria 26756
159 Ga0316576_10150726 3300031727 Bacteria 1752
160 Ga0307405_10008216 3300031731 Bacteria 5278
161 Ga0307518_10021341 3300031838 Bacteria 4658
162 Ga0307412_10047451 3300031911 Bacteria 2821
163 Ga0307416_100176629 3300032002 Bacteria 1996
164 Ga0307414_10003289 3300032004 Bacteria 8614
165 Ga0307411_10000474 3300032005 Bacteria 13958
166 Ga0307411_10010390 3300032005 Bacteria 4959
167 Ga0307510_10009870 3300033180 Bacteria 11360
168 Ga0373948_0001756 3300034817 Bacteria 3082
169 Ga0373940_0002056 3300035088 Bacteria 3821
170 Ga0373939_0000010 3300035114 Bacteria 68491
171 Ga0373956_0140985 3300035119 Bacteria 1131
172 Ga0373960_0013015 3300035121 Bacteria 2078
173 Ga0395899_0000355 3300037312 Bacteria 56049
174 Ga0395899_0000956 3300037312 Bacteria 27045
175 Ga0395899_0007917 3300037312 Bacteria 8185
176 Ga0395899_0063387 3300037312 Bacteria 2719
177 Ga0395899_0140700 3300037312 Bacteria 1717
178 Ga0395900_0016730 3300037418 Bacteria 7481
179 Ga0395900_0168962 3300037418 Bacteria 2227
180 Ga0395900_0416684 3300037418 Bacteria 1304
181 Ga0395900_0471066 3300037418 Bacteria 1209
182 Ga0395898_0001296 3300037466 Bacteria 36599
183 Ga0395898_0017655 3300037466 Bacteria 7284
184 Ga0395905_0021566 3300037471 Bacteria 6090
185 Ga0395905_0022155 3300037471 Bacteria 6010
186 Ga0395905_0097773 3300037471 Bacteria 2756
187 Ga0395905_0159357 3300037471 Bacteria 2121
188 Ga0395901_0003128 3300038443 Bacteria 16623
189 Ga0395901_0003697 3300038443 Bacteria 15427
190 Ga0395901_0026731 3300038443 Bacteria 5924
191 Ga0436361_0049305 3300039447 Bacteria 21131
192 Ga0436361_0313742 3300039447 Bacteria 4571
193 Ga0436361_0594091 3300039447 Bacteria 35115
194 Ga0436361_0948667 3300039447 Bacteria 9918
195 Ga0436361_0998971 3300039447 Bacteria 4431
196 Ga0439436_0000937 3300041404 Bacteria 8032
197 Ga0439436_0046504 3300041404 Bacteria 1233
198 Ga0439447_026803 3300041407 Bacteria 1474
199 Ga0439461_0020188 3300041410 Bacteria 1317
200 Ga0439466_0052040 3300041411 Bacteria 1339
201 Ga0451807_1753838 3300041486 Bacteria 1215
202 Ga0439431_0001180 3300041997 Bacteria 5715
203 Ga0439433_0001961 3300041999 Bacteria 4310
204 Ga0439437_001221 3300042000 Bacteria 2702
205 Ga0439442_005727 3300042002 Bacteria 2489
206 Ga0439445_0000771 3300042004 Bacteria 6714
207 Ga0439432_000167 3300042006 Bacteria 22831
208 Ga0439432_016519 3300042006 Bacteria 2483
209 Ga0439449_0001887 3300042007 Bacteria 8259
210 Ga0439449_0002369 3300042007 Bacteria 7377
211 Ga0439457_011161 3300042014 Bacteria 2050
212 Ga0439457_012401 3300042014 Bacteria 1921
213 Ga0439462_0002288 3300042015 Bacteria 4427
214 Ga0450917_000439 3300042120 Bacteria 3137
215 Ga0450888_000243 3300042126 Bacteria 4987
216 Ga0450890_005317 3300042127 Bacteria 1658
217 Ga0450897_000064 3300042128 Bacteria 4806
218 Ga0450892_000213 3300042130 Bacteria 6912
219 Ga0439434_0001963 3300042435 Bacteria 5952
220 Ga0451577_0008906 3300042876 Bacteria 9714
221 Ga0451577_0009081 3300042876 Bacteria 9593
222 Ga0451577_0258998 3300042876 Bacteria 1575
223 Ga0451577_0556273 3300042876 Bacteria 1041
224 Ga0466972_0000029 3300044658 Bacteria 165236
225 Ga0466965_0002765 3300044683 Bacteria 7537
226 Ga0466965_0005265 3300044683 Bacteria 5817
227 Ga0466964_0108345 3300044706 Bacteria 1235
228 Ga0453684_0027220 3300044712 Bacteria 8208
229 Ga0453684_0071880 3300044712 Bacteria 4371
230 Ga0453684_0078090 3300044712 Bacteria 4145
231 Ga0466968_0105850 3300044735 Bacteria 1260
232 Ga0466970_0075915 3300044765 Bacteria 1810
233 Ga0466959_0031584 3300045049 Bacteria 3918
234 Ga0451576_0002177 3300045051 Bacteria 30313
235 Ga0451576_0030401 3300045051 Bacteria 5772
236 Ga0451576_0108811 3300045051 Bacteria 2884
237 Ga0451576_0160447 3300045051 Bacteria 2346
238 Ga0495592_0001970 3300046454 Bacteria 14493
239 Ga0495638_0004731 3300046460 Bacteria 10275
240 Ga0495638_0019932 3300046460 Bacteria 4434
241 Ga0495638_0064728 3300046460 Bacteria 2252
242 Ga0495650_0004092 3300046471 Bacteria 10185
243 Ga0495584_0000254 3300046491 Bacteria 38075
244 Ga0495585_0012649 3300046492 Bacteria 4967
245 Ga0495585_0048880 3300046492 Bacteria 2351
246 Ga0495607_0005633 3300046501 Bacteria 8928
247 Ga0495583_0051569 3300046506 Bacteria 1875
248 Ga0495606_0000290 3300046507 Bacteria 87022
249 Ga0495606_0002198 3300046507 Bacteria 23385
250 Ga0495606_0007056 3300046507 Bacteria 10175
251 Ga0495610_0002816 3300046512 Bacteria 14177
252 Ga0495610_0006390 3300046512 Bacteria 8124
253 Ga0495610_0159867 3300046512 Bacteria 953
254 Ga0495616_0022809 3300046513 Bacteria 3375
255 Ga0495632_0098549 3300046519 Bacteria 1379
256 Ga0495643_0021424 3300046522 Bacteria 3708
257 Ga0495648_0015095 3300046524 Bacteria 5624
258 Ga0495609_0003914 3300046538 Bacteria 8350
259 Ga0495621_0003078 3300046539 Bacteria 4555
260 Ga0495622_0008817 3300046557 Bacteria 4670
261 Ga0495633_0001171 3300046558 Bacteria 21096
262 Ga0495633_0005790 3300046558 Bacteria 7458
263 Ga0495633_0010187 3300046558 Bacteria 5143
264 Ga0495656_0000141 3300046615 Bacteria 26743
265 Ga0495668_0000049 3300046616 Bacteria 217657
266 Ga0495668_0000177 3300046616 Bacteria 94811
267 Ga0495668_0001394 3300046616 Bacteria 23536
268 Ga0495611_0130407 3300046648 Bacteria 1172
269 Ga0495625_0003184 3300046660 Bacteria 16701
270 Ga0495659_0001441 3300046664 Bacteria 8067
271 Ga0495661_0054738 3300046665 Bacteria 2394
272 Ga0495669_0039054 3300046684 Bacteria 2101
273 Ga0495613_0224548 3300046689 Bacteria 1317
274 Ga0495670_0146225 3300046691 Bacteria 1238
275 Ga0495671_0001262 3300046692 Bacteria 17291
276 Ga0495671_0045798 3300046692 Bacteria 2189
277 Ga0495649_0000166 3300046694 Bacteria 57538
278 Ga0495673_0000027 3300047469 Bacteria 475440
279 Ga0495686_0000539 3300047472 Bacteria 54152
280 Ga0495686_0002547 3300047472 Bacteria 17027
281 Ga0495686_0119957 3300047472 Bacteria 1569
282 Ga0496117_0000001 3300048920 Bacteria 2526244
283 Ga0496118_0000008 3300048921 Bacteria 644537
284 Ga0496118_0027726 3300048921 Bacteria 4785
285 Ga0496118_0086851 3300048921 Bacteria 2172
286 Ga0496121_0059590 3300048924 Bacteria 3146
287 Ga0496121_0076098 3300048924 Bacteria 2677
288 Ga0496121_0274566 3300048924 Bacteria 1156
289 Ga0496122_0000342 3300048925 Bacteria 100753
290 Ga0496122_0002399 3300048925 Bacteria 26741
291 Ga0496123_0000057 3300048926 Bacteria 228608
292 Ga0496123_0005360 3300048926 Bacteria 12945
293 Ga0496124_0082995 3300048927 Bacteria 2630
294 Ga0496125_0032505 3300048928 Bacteria 4634
295 Ga0496126_0144518 3300048929 Bacteria 2044
296 Ga0496126_0352324 3300048929 Bacteria 1204
297 Ga0495682_0027020 3300049460 Bacteria 2130
298 Ga0501294_003158 3300049517 Bacteria 1553
299 Ga0501034_0076282 3300049571 Bacteria 3359
300 Ga0501222_001911 3300049662 Bacteria 2887
301 Ga0501225_0008366 3300049705 Bacteria 2970
302 Ga0501241_008287 3300049758 Bacteria 1899
303 nmdc:mga03683_4751_c1 3300050489 Bacteria 4533
304 nmdc:mga0k408_25582_c1 3300050493 Bacteria 3343
305 nmdc:mga07m45_2655_c1 3300050496 Bacteria 8425
306 nmdc:mga07m45_8862_c1 3300050496 Bacteria 5192
307 nmdc:mga0qj67_5716_c1 3300050509 Bacteria 9098
308 nmdc:mga08y16_4964_c1 3300050511 Bacteria 13905
309 Ga0500644_0001578 3300053088 Bacteria 5974
310 Ga0500583_0039908 3300053092 Bacteria 2124
311 Ga0500651_0002268 3300053093 Bacteria 10089
312 Ga0500593_000195 3300053117 Bacteria 24547
313 Ga0500594_0002004 3300053118 Bacteria 4402
314 Ga0500618_003964 3300053125 Bacteria 4896
315 Ga0500559_0000109 3300053136 Bacteria 65246
316 Ga0500619_070179 3300053154 Bacteria 1164
317 Ga0500636_0080713 3300053177 Bacteria 1874
318 Ga0500637_0013265 3300053178 Bacteria 4317
319 Ga0500645_000336 3300053730 Bacteria 33456
320 Ga0500645_040569 3300053730 Bacteria 1376
321 2511245676 2511231002 Bacteria 5042903
322 2511248122 2511231003 Bacteria 5606035
323 2601670625 2600255292 Bacteria 6300551
324 2643746526 2643221544 Bacteria 5886209
325 2643935446 2643221585 Bacteria 5812563
326 2644220910 2643221639 Bacteria 6649903
327 2644259754 2643221646 Bacteria 6433402
328 2644317228 2643221656 Bacteria 5809961
329 2738825466 2738541297 Bacteria 6549566
330 2739057338 2738541337 Bacteria 6183410
331 2739149263 2738541357 Bacteria 6549408
332 2739191182 2738543003 Bacteria 6549560
333 2739317659 2738543026 Bacteria 6549408
334 2739335900 2738543029 Bacteria 6549249
335 2821134060 2821131069 Bacteria 6108407
336 2842736219 2842733646 Bacteria 5716726
337 2846036338 2846033681 Bacteria 4377894
338 2857548030 2857547612 Bacteria 6179999
339 2857565876 2857564685 Bacteria 6290584
340 2885082071 2885080285 Bacteria 6355622
341 2885196152 2885192300 Bacteria 5882526
342 2932412621 2932410948 Bacteria 6312192
343 2932420136 2932416698 Bacteria 6315112
344 2939632812 2939631187 Bacteria 6118131
345 Ga0453684_0218136
346 JGI25155J39150_1000051
347 JGI25155J39150_1000172
348 JGI25155J39150_1000682
349 JGI25156J39149_1000155
350 JGI25154J39366_1000170
351 JGI25154J39366_1000544
352 JGI25157J39369_1000091
353 JGI25150J39212_1003037
354 JGI25159J45721_1000098
355 JGI25159J45721_1001780
356 JGI25151J46595_10002443
357 JGI25151J46595_10013815
358 JGI25151J46595_10030562
359 rootL2_10029821
360 rootL2_10108928
361 JGI25160J50197_1000067
362 JGI25161J50226_1000035
363 Ga0055529_1000127
364 Ga0055526_1002517
365 Ga0055526_1004041
366 Ga0055526_1005035
367 Ga0055537_1000156
368 Ga0055537_1000187
369 Ga0055537_1000223
370 Ga0055537_1000427
371 Ga0055537_1008033
372 Ga0055524_1000006
373 Ga0055536_1009386
374 Ga0055534_1000230
375 Ga0055534_1000925
376 Ga0055528_1001059
377 Ga0055530_10000154
378 Ga0055530_10017025
379 Ga0055540_1000005
380 Ga0055531_10000078
381 Ga0055531_10014102
382 Ga0055543_1000775
383 Ga0065165_1006745
384 Ga0065165_1041281
385 Ga0065165_1049648
386 Ga0065707_10089557
387 Ga0070658_10083693
388 Ga0070660_100020685
389 Ga0070669_100080036
390 Ga0070671_100003639
391 Ga0070667_100545575
392 Ga0070679_100247777
393 Ga0068855_100000592
394 Ga0068855_100061494
395 Ga0068857_100222316
396 Ga0068856_100107104
397 Ga0068856_100125945
398 Ga0068861_100010140
399 Ga0068863_100055765
400 Ga0068858_100035828
401 Ga0068860_100247614
402 Ga0068862_100063880
403 Ga0068862_100151351
404 Ga0075363_100013504
405 Ga0075366_10009838
406 Ga0075366_10020004
407 Ga0075370_10013574
408 Ga0075430_100008736
409 Ga0105244_10002932
410 Ga0105240_10065605
411 Ga0105240_10078652
412 Ga0111539_10021093
413 Ga0105242_10222061
414 Ga0105238_10035904
415 Ga0105238_10285029
416 Ga0105249_10016323
417 Ga0163162_10781354
418 Ga0157375_10164148
419 Ga0157380_10001963
420 Ga0182008_10002758
421 Ga0157379_10482548
422 Ga0182006_1000014
423 Ga0182007_10000686
424 Ga0182005_1000014
425 Ga0183362_10003
426 Ga0213872_10000002
427 Ga0213872_10000079
428 Ga0213872_10000437
429 Ga0213872_10064802
430 Ga0213872_10089264
431 Ga0209435_100062
432 Ga0207425_1001551
433 Ga0207425_1006170
434 Ga0209646_1000001
435 Ga0209646_1000052
436 Ga0209026_1000224
437 Ga0209026_1003959
438 Ga0209759_1000013
439 Ga0209759_1000514
440 Ga0209565_1000006
441 Ga0209565_1000246
442 Ga0209565_1000345
443 Ga0209565_1003658
444 Ga0209455_1000051
445 Ga0209673_1000004
446 Ga0209673_1000043
447 Ga0209130_1000241
448 Ga0209130_1000623
449 Ga0209675_1000006
450 Ga0209675_1000309
451 Ga0209675_1001121
452 Ga0209676_1000007
453 Ga0209676_1007229
454 Ga0209025_1001588
455 Ga0209025_1003916
456 Ga0209025_1004522
457 Ga0209564_1000064
458 Ga0209564_1000285
459 Ga0209564_1001560
460 Ga0209564_1004906
461 Ga0209758_1016293
462 Ga0209050_1000003
463 Ga0209050_1013526
464 Ga0209050_1015141
465 Ga0209256_1000001
466 Ga0209256_1000179
467 Ga0207426_1000247
468 Ga0207426_1002083
469 Ga0209051_1000003
470 Ga0209051_1007166
471 Ga0209257_1000020
472 Ga0209257_1000032
473 Ga0209257_1005213
474 Ga0207705_10007076
475 Ga0207695_10263561
476 Ga0207657_10043481
477 Ga0207652_10213941
478 Ga0207681_10070175
479 Ga0207694_10132095
480 Ga0207667_10018033
481 Ga0207658_10483146
482 Ga0207702_10031178
483 Ga0207702_10073154
484 Ga0207676_10090845
485 Ga0207674_10332299
486 Ga0207675_100017318
487 Ga0209974_10020853
488 Ga0207428_10011848
489 Ga0268265_10032318
490 Ga0307517_10000644
491 Ga0307515_10000195
492 Ga0307515_10000991
493 Ga0307515_10013057
494 Ga0265332_10000014
495 Ga0265327_10000425
496 Ga0307513_10000004
497 Ga0307513_10000054
498 Ga0307513_10123783
499 Ga0307509_10000041
500 Ga0307408_100000064
501 Ga0307408_100000521
502 Ga0307508_10001442
503 Ga0316576_10150726
504 Ga0307405_10008216
505 Ga0307518_10021341
506 Ga0307412_10047451
507 Ga0307416_100176629
508 Ga0307414_10003289
509 Ga0307411_10000474
510 Ga0307411_10010390
511 Ga0307510_10009870
512 Ga0373948_0001756
513 Ga0373940_0002056
514 Ga0373939_0000010
515 Ga0373956_0140985
516 Ga0373960_0013015
517 Ga0395899_0000355
518 Ga0395899_0000956
519 Ga0395899_0007917
520 Ga0395899_0063387
521 Ga0395899_0140700
522 Ga0395900_0016730
523 Ga0395900_0168962
524 Ga0395900_0416684
525 Ga0395900_0471066
526 Ga0395898_0001296
527 Ga0395898_0017655
528 Ga0395905_0021566
529 Ga0395905_0022155
530 Ga0395905_0097773
531 Ga0395905_0159357
532 Ga0395901_0003128
533 Ga0395901_0003697
534 Ga0395901_0026731
535 Ga0436361_0049305
536 Ga0436361_0313742
537 Ga0436361_0594091
538 Ga0436361_0948667
539 Ga0436361_0998971
540 Ga0439436_0000937
541 Ga0439436_0046504
542 Ga0439447_026803
543 Ga0439461_0020188
544 Ga0439466_0052040
545 Ga0451807_1753838
546 Ga0439431_0001180
547 Ga0439433_0001961
548 Ga0439437_001221
549 Ga0439442_005727
550 Ga0439445_0000771
551 Ga0439432_000167
552 Ga0439432_016519
553 Ga0439449_0001887
554 Ga0439449_0002369
555 Ga0439457_011161
556 Ga0439457_012401
557 Ga0439462_0002288
558 Ga0450917_000439
559 Ga0450888_000243
560 Ga0450890_005317
561 Ga0450897_000064
562 Ga0450892_000213
563 Ga0439434_0001963
564 Ga0451577_0008906
565 Ga0451577_0009081
566 Ga0451577_0258998
567 Ga0451577_0556273
568 Ga0466972_0000029
569 Ga0466965_0002765
570 Ga0466965_0005265
571 Ga0466964_0108345
572 Ga0453684_0027220
573 Ga0453684_0071880
574 Ga0453684_0078090
575 Ga0466968_0105850
576 Ga0466970_0075915
577 Ga0466959_0031584
578 Ga0451576_0002177
579 Ga0451576_0030401
580 Ga0451576_0108811
581 Ga0451576_0160447
582 Ga0495592_0001970
583 Ga0495638_0004731
584 Ga0495638_0019932
585 Ga0495638_0064728
586 Ga0495650_0004092
587 Ga0495584_0000254
588 Ga0495585_0012649
589 Ga0495585_0048880
590 Ga0495607_0005633
591 Ga0495583_0051569
592 Ga0495606_0000290
593 Ga0495606_0002198
594 Ga0495606_0007056
595 Ga0495610_0002816
596 Ga0495610_0006390
597 Ga0495610_0159867
598 Ga0495616_0022809
599 Ga0495632_0098549
600 Ga0495643_0021424
601 Ga0495648_0015095
602 Ga0495609_0003914
603 Ga0495621_0003078
604 Ga0495622_0008817
605 Ga0495633_0001171
606 Ga0495633_0005790
607 Ga0495633_0010187
608 Ga0495656_0000141
609 Ga0495668_0000049
610 Ga0495668_0000177
611 Ga0495668_0001394
612 Ga0495611_0130407
613 Ga0495625_0003184
614 Ga0495659_0001441
615 Ga0495661_0054738
616 Ga0495669_0039054
617 Ga0495613_0224548
618 Ga0495670_0146225
619 Ga0495671_0001262
620 Ga0495671_0045798
621 Ga0495649_0000166
622 Ga0495673_0000027
623 Ga0495686_0000539
624 Ga0495686_0002547
625 Ga0495686_0119957
626 Ga0496117_0000001
627 Ga0496118_0000008
628 Ga0496118_0027726
629 Ga0496118_0086851
630 Ga0496121_0059590
631 Ga0496121_0076098
632 Ga0496121_0274566
633 Ga0496122_0000342
634 Ga0496122_0002399
635 Ga0496123_0000057
636 Ga0496123_0005360
637 Ga0496124_0082995
638 Ga0496125_0032505
639 Ga0496126_0144518
640 Ga0496126_0352324
641 Ga0495682_0027020
642 Ga0501294_003158
643 Ga0501034_0076282
644 Ga0501222_001911
645 Ga0501225_0008366
646 Ga0501241_008287
647 nmdc:mga03683_4751_c1
648 nmdc:mga0k408_25582_c1
649 nmdc:mga07m45_2655_c1
650 nmdc:mga07m45_8862_c1
651 nmdc:mga0qj67_5716_c1
652 nmdc:mga08y16_4964_c1
653 Ga0500644_0001578
654 Ga0500583_0039908
655 Ga0500651_0002268
656 Ga0500593_000195
657 Ga0500594_0002004
658 Ga0500618_003964
659 Ga0500559_0000109
660 Ga0500619_070179
661 Ga0500636_0080713
662 Ga0500637_0013265
663 Ga0500645_000336
664 Ga0500645_040569
665 2511245676
666 2511248122
667 2601670625
668 2643746526
669 2643935446
670 2644220910
671 2644259754
672 2644317228
673 2738825466
674 2739057338
675 2739149263
676 2739191182
677 2739317659
678 2739335900
679 2821134060
680 2842736219
681 2846036338
682 2857548030
683 2857565876
684 2885082071
685 2885196152
686 2932412621
687 2932420136
688 2939632812

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF01715

IPPT

IPP transferase

51

321

0.92

PF01745

IPT

Isopentenyl transferase

16

84

0.92

Structural Annotation

Top 5 Hits

ID Description Score Start End
2zm5-assembly1.cif.gz_A crystal structure of trna modification enzyme miaa in the complex with trna(phe) 0.9324 3 310
3crr-assembly1.cif.gz_A structure of trna dimethylallyltransferase: rna modification through a channel 0.9228 1 312
2zm5-assembly1.cif.gz_A crystal structure of trna modification enzyme miaa in the complex with trna(phe) 0.9176 3 310
3crr-assembly1.cif.gz_A structure of trna dimethylallyltransferase: rna modification through a channel 0.9007 1 312
2qgn-assembly1.cif.gz_A crystal structure of trna isopentenylpyrophosphate transferase (bh2366) from bacillus halodurans, northeast structural genomics consortium target bhr41. 0.8944 3 316
ID Description Score Start End Superfamily
af_P16384_121_194_1.10.20.140 Mainly Alpha;Orthogonal Bundle;Histone, subunit A; 0.9973 115 180 1.10.20.140
3crrA02 Mainly Alpha;Orthogonal Bundle;Helix Hairpins;Crystal structure of tRNA isopentenylpyrophosphate transferase (bh2366) domain 0.9557 208 288 1.10.287.890
3crrA01 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;P-loop containing nucleotide triphosphate hydrolases 0.9545 1 112 3.40.50.300
2zm5B01 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;P-loop containing nucleotide triphosphate hydrolases 0.933 4 310 3.40.50.300
3exaA03 Mainly Alpha;Orthogonal Bundle;Helix Hairpins;Crystal structure of tRNA isopentenylpyrophosphate transferase (bh2366) domain 0.9248 206 287 1.10.287.890
ID Description Score Start End GO Terms
AF-A0A7H4PQY9-F1-model_v4 tRNA dimethylallyltransferase (EC 2.5.1.75) 0.9876 43 169 GO:0005524
GO:0006400
GO:0052381
AF-A0A6M1HZG2-F1-model_v4 deleted 0.9826 3 147
AF-A0A5C9B6K1-F1-model_v4 tRNA dimethylallyltransferase (EC 2.5.1.75) 0.9819 3 132 GO:0005524
GO:0006400
GO:0052381
AF-A0A0F9T3R4-F1-model_v4 tRNA dimethylallyltransferase (EC 2.5.1.75) 0.9758 4 120 GO:0005524
GO:0006400
GO:0052381
AF-A0A3D0W7X5-F1-model_v4 tRNA dimethylallyltransferase (EC 2.5.1.75) 0.9751 1 180 GO:0005524
GO:0006400
GO:0052381

Map