F418098

General Info

Members Datasets Scaffolds Average Seq Length
349 206 698 385

Family's Representative Sequence

Representative Sequence iso_pu_bacteria|8056037122|8056038148
Length 422
Sequence SDLTGQSAAIEVFRAAAESSLRPRGEAHPTAPPTGSPTTQPPGPAPAQATDARGATDSMTHSWLITGPPGSGRSNLAYAFASALLCRFGGCGVCPDCTQVAARTHPDLAVLATERVIISIEEVRKLVSSSQFSPSVARYRVVVIEDADRMQERTSNVLLKALEEPPERTVWILCAPSEADLLPTIRSRVRSVRLRVPSTGDVASLLQRRDGVDAATAERAARESQSHIGMAHRLATNDEARARRAETLDLALGVRSVGDAVRGAARLLEIAGADAQAITLERDAEERESALRSLGVEPGQAVPPALRSQMKALEDDQKRRATRSLRDGIDRILTDLLSLYRDVVLVQLGAPDSVELVNEAIADRVREVAAGVDPAQTLAAMDAIADARRRIAANVAPALSLEAMLITLAEAGRTAASRKVSP

Samples

Sample ID Description Type Environment
1 3300001979 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6 Metagenome Rhizosphere
2 3300002067 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C1 Metagenome Rhizosphere
3 3300002772 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mMS Metagenome Endosphere
4 3300003214 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mCL Metagenome Endosphere
5 3300003578 Arabidopsis root microbial communities from the University of North Carolina, USA - metaT NBMF1_36_input_d2 (Metagenome Metatranscriptome, Counting Only) Metatranscriptome Unclassified
6 3300003752 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mCL_r2 Metagenome Endosphere
7 3300003756 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mMS_r2 Metagenome Endosphere
8 3300003759 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mMF_r2 Metagenome Endosphere
9 3300003760 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mMS_r2 Metagenome Endosphere
10 3300003762 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mMF_r2 Metagenome Endosphere
11 3300003763 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mCL_r2 Metagenome Endosphere
12 3300003841 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mTSA_r2 Metagenome Endosphere
13 3300005327 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG Metagenome Rhizosphere
14 3300005330 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3H metaG Metagenome Rhizosphere
15 3300005337 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3L metaG Metagenome Rhizosphere
16 3300005338 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 Metagenome Rhizosphere
17 3300005339 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG Metagenome Rhizosphere
18 3300005355 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG Metagenome Rhizosphere
19 3300005366 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG Metagenome Rhizosphere
20 3300005367 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG Metagenome Rhizosphere
21 3300005466 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3L metaG Metagenome Rhizosphere
22 3300005539 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 Metagenome Rhizosphere
23 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
24 3300005577 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 Metagenome Rhizosphere
25 3300005578 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 Metagenome Rhizosphere
26 3300005616 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 Metagenome Rhizosphere
27 3300005834 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C1-2 Metagenome Rhizosphere
28 3300005841 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 Metagenome Rhizosphere
29 3300005842 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 Metagenome Rhizosphere
30 3300006038 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 Metagenome Endosphere
31 3300006051 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 Metagenome Endosphere
32 3300009036 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-4 metaG Metagenome Rhizosphere
33 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
34 3300009174 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG Metagenome Rhizosphere
35 3300009177 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG Metagenome Rhizosphere
36 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
37 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
38 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
39 3300013102 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG Metagenome Rhizosphere
40 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
41 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
42 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
43 3300020069 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-2 (Metagenome Metatranscriptome) (v2) (version 2) Metatranscriptome Rhizosphere
44 3300020081 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-3 (Metagenome Metatranscriptome) (v2) (version 2) Metatranscriptome Rhizosphere
45 3300025225 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mTSA_r2 (SPAdes) (version 2) Metagenome Endosphere
46 3300025226 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mMS_r2 (SPAdes) (version 2) Metagenome Endosphere
47 3300025228 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mMS_r2 (SPAdes) (version 2) Metagenome Endosphere
48 3300025230 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mMF_r2 (SPAdes) (version 2) Metagenome Endosphere
49 3300025231 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mMS (SPAdes) (version 2) Metagenome Endosphere
50 3300025233 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mTSA (SPAdes) (version 2) Metagenome Endosphere
51 3300025253 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
52 3300025254 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mMF_r2 (SPAdes) (version 2) Metagenome Endosphere
53 3300025261 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mCL (SPAdes) (version 2) Metagenome Endosphere
54 3300025272 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
55 3300025321 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C1-2 (SPAdes) (version 2) Metagenome Rhizosphere
56 3300025904 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2 (SPAdes) (version 2) Metagenome Rhizosphere
57 3300025909 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
58 3300025911 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
59 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
60 3300025914 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
61 3300025920 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
62 3300025924 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
63 3300025932 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
64 3300025941 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
65 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
66 3300026035 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes) (version 2) Metagenome Rhizosphere
67 3300026041 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes) (version 2) Metagenome Rhizosphere
68 3300026088 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes) (version 2) Metagenome Rhizosphere
69 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
70 3300026118 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes) (version 2) Metagenome Rhizosphere
71 3300026142 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes) (version 2) Metagenome Rhizosphere
72 3300028794 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM Metagenome Unclassified
73 3300031649 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 16_EM Metagenome Unclassified
74 3300031731 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-1 Metagenome Rhizosphere
75 3300031824 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-2 Metagenome Rhizosphere
76 3300031901 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2 Metagenome Rhizosphere
77 3300031995 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2 Metagenome Rhizosphere
78 3300037312 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_B SG_2 Metagenome Rhizosphere
79 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
80 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
81 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
82 3300041452 Perennial ryegrass root microbial community from Lincoln, Canterbury, New Zealand - RGR17_4 MetaG Metagenome Rhizoplane
83 3300044658 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC1R Metagenome Rhizosphere
84 3300044683 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA3R Metagenome Rhizosphere
85 3300044684 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC4R Metagenome Rhizosphere
86 3300044693 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC2R Metagenome Rhizosphere
87 3300044719 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC1R Metagenome Rhizosphere
88 3300044735 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA1R Metagenome Rhizosphere
89 3300044765 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA2R Metagenome Rhizosphere
90 3300044901 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA4R Metagenome Rhizosphere
91 3300045049 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC3R Metagenome Rhizosphere
92 3300045976 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA4R Metagenome Rhizosphere
93 3300046457 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-133-Co2_50_25 rhizosphere Metagenome Rhizosphere
94 3300046471 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co3_9_34 rhizosphere Metagenome Rhizosphere
95 3300046523 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co3_28_42 rhizosphere Metagenome Rhizosphere
96 3300046530 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-866-Co1_10_5 rhizosphere Metagenome Rhizosphere
97 3300046543 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL1_28_5 rhizosphere Metagenome Rhizosphere
98 3300046615 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-866-Co3_27_48 rhizosphere Metagenome Rhizosphere
99 3300047320 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co2_68_28 rhizosphere Metagenome Rhizosphere
100 3300047472 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co2_54_22 rhizosphere Metagenome Rhizosphere
101 3300048091 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co2_54_7 rhizosphere Metagenome Rhizosphere
102 3300048904 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7w unlabeled Metagenome Rhizoplane
103 3300048905 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1c N15 Metagenome Rhizoplane
104 3300048906 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1d N15 Metagenome Rhizoplane
105 3300048907 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2c N15 Metagenome Rhizoplane
106 3300048911 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8v unlabeled Metagenome Rhizoplane
107 3300048917 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6c N15 Metagenome Rhizoplane
108 3300048918 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6d N15 Metagenome Rhizoplane
109 3300048920 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1e N15 Metagenome Unclassified
110 3300048921 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1f N15 Metagenome Unclassified
111 3300048922 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2e N15 Metagenome Unclassified
112 3300048923 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2f N15 Metagenome Unclassified
113 3300048924 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_3e N15 Metagenome Unclassified
114 3300048925 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8x unlabeled Metagenome Unclassified
115 3300048926 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8y unlabeled Metagenome Unclassified
116 3300048927 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_4e N15 Metagenome Unclassified
117 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
118 3300049568 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_01 Metagenome Rhizosphere
119 3300049569 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_02 Metagenome Rhizosphere
120 3300049570 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_03 Metagenome Rhizosphere
121 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
122 3300049572 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 Metagenome Rhizosphere
123 3300049573 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_01 Metagenome Rhizosphere
124 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
125 3300049575 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_03 Metagenome Rhizosphere
126 3300049578 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_03 Metagenome Rhizosphere
127 3300049579 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 Metagenome Rhizosphere
128 3300049580 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_01 Metagenome Rhizosphere
129 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
130 3300049583 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_01 Metagenome Rhizosphere
131 3300049585 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_03 Metagenome Rhizosphere
132 3300049586 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 Metagenome Rhizosphere
133 3300049587 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_02 Metagenome Rhizosphere
134 3300049588 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_03 Metagenome Rhizosphere
135 3300049589 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_01 Metagenome Rhizosphere
136 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
137 3300049744 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_02 Metagenome Rhizosphere
138 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
139 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
140 3300050491 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 re-annotation Metagenome Endosphere
141 3300050494 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 re-annotation Metagenome Endosphere
142 3300050516 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-4 re-annotation Metagenome Endosphere
143 3300053080 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-905-CL1_32_20 endosphere Metagenome Endosphere
144 3300053087 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co3_14_51 endosphere Metagenome Endosphere
145 3300053098 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co1_16_8 endosphere Metagenome Endosphere
146 3300053104 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co2_41_23 endosphere Metagenome Endosphere
147 3300053108 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-133-Co2_50_25 endosphere Metagenome Endosphere
148 3300053117 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co2_62_25 endosphere Metagenome Endosphere
149 3300053133 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWA-24-3-Co2_41_10 endosphere Metagenome Endosphere
150 3300053136 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL2_62_7 endosphere Metagenome Endosphere
151 3300053139 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co1_23_3 endosphere Metagenome Endosphere
152 3300053140 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL1_33_12 endosphere Metagenome Endosphere
153 3300053142 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co1_31_6 endosphere Metagenome Endosphere
154 3300053146 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-351-Co2_42_17 endosphere Metagenome Endosphere
155 3300053148 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-360-CL2_44_14 endosphere Metagenome Endosphere
156 3300053153 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 endosphere Metagenome Endosphere
157 3300053155 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL3_83_27 endosphere Metagenome Endosphere
158 3300061719 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC2R1 Metagenome Rhizosphere
159 8056037122 Herbiconiux gentiana CPCC 205716 Isolate Rhizosphere
160 2643221549 Agromyces sp. Root1464 Isolate Unclassified
161 2643221572 Leifsonia sp. Root60 Isolate Unclassified
162 2643221616 Leifsonia sp. Root227 Isolate Unclassified
163 2643221619 Agromyces sp. Root81 Isolate Unclassified
164 2643221632 Leifsonia sp. Root112D2 Isolate Unclassified
165 2643221635 Yonghaparkia sp. Root332 Isolate Unclassified
166 2643221669 Leifsonia sp. Root1293 Isolate Unclassified
167 2721755702 Agromyces sp. AR33 Isolate Rhizosphere
168 2751185788 Curtobacterium pusillum AA3 Isolate Unclassified
169 2808606306 Microbacterium sp. SLBN-146 Isolate Unclassified
170 2808606372 Agromyces sp. 23-23 Isolate Unclassified
171 2844841374 Leifsonia soli DSM 23871 Isolate Rhizosphere
172 2844852863 Herbiconiux flava DSM 26474 Isolate Rhizosphere
173 2852643534 Leifsonia sp. AK011 Isolate Rhizosphere
174 2857729791 Plantibacter sp. R-72288 Isolate Unclassified
175 2857733635 Salinibacterium sp. R-73062 Isolate Unclassified
176 2857737099 Lysinimonas sp. R-73066 Isolate Unclassified
177 2862993130 Planctomonas deserti 13S1-3 v2 Isolate Rhizosphere
178 2870622029 Conyzicola lurida DSM 105784 Isolate Unclassified
179 2884763398 Leifsonia sp. PS1209 Isolate Stem Tuber
180 2895660088 Leifsonia flava SYP-B2174 Isolate Rhizosphere
181 2904430863 Curtobacterium oceanosedimentum 1519 Isolate Rhizosphere
182 2904501621 Curtobacterium sp. 1909 Isolate Unclassified
183 2906799679 Microbacterium karelineae TRM80801 Isolate Unclassified
184 2908674828 Curtobacterium sp. 1517 Isolate Rhizosphere
185 2909074476 Curtobacterium sp. 1310 Isolate Rhizosphere
186 2919039151 Curtobacterium sp. 260 Isolate Rhizosphere
187 2919042368 Curtobacterium sp. 320 Isolate Rhizosphere
188 2919055335 Leifsonia sp. 1010 Isolate Rhizosphere
189 2919443155 Agromyces sp. 3263 Isolate Rhizosphere
190 2919523602 Leifsonia shinshuensis 3821 Isolate Unclassified
191 2928104781 Curtobacterium sp. 1544 Isolate Rhizosphere
192 2928121344 Plantibacter flavus 1756 Isolate Rhizosphere
193 2928153084 Leifsonia sp. 563 Isolate Unclassified
194 2928500415 Curtobacterium oceanosedimentum 1257 Isolate Rhizosphere
195 2935409751 Agromyces sp. PvR057 Isolate Rhizosphere
196 2939657138 Conyzicola nivalis 2857 Isolate Rhizosphere
197 2939660829 Mycetocola sp. 2940 Isolate Rhizosphere
198 2964326757 Planctomonas psychrotolerans J5903 Isolate Rhizosphere
199 2966921586 Rathayibacter agropyri 617 Isolate Rhizosphere
200 2966924647 Frigoribacterium sp. 2355 Isolate Rhizosphere
201 2995726249 Leucobacter zeae CC-MF41 Isolate Rhizosphere
202 8002811521 Leucobacter chinensis NC76-1 Isolate Rhizosphere
203 8046352972 Agromyces mangrovi NBRC 112812 Isolate Rhizosphere
204 8055034563 Leucobacter allii H21R-40 Isolate Rhizosphere
205 8055037949 Leucobacter rhizosphaerae H25R-14 Isolate Rhizosphere
206 8057345674 Herbiconiux aconitum CPCC 205763 Isolate Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 85.1
Metatranscriptomes 1.15
Isolates 13.75

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 17.19
Nodule 0
Rhizoplane 3.44
Rhizosphere 64.47
Stem 0
Stem Tuber 0.29
Unclassified 0

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 JGI24740J21852_10002853 3300001979 Bacteria 7724
2 JGI24735J21928_10001165 3300002067 Bacteria 9407
3 JGI25164J39214_1000589 3300002772 Bacteria 16230
4 JGI25165J46597_1000148 3300003214 Bacteria 116003
5 Ga0006562J51391_1023183 3300003578 Bacteria 10432
6 Ga0006562J51391_1023185 3300003578 Bacteria 6250
7 Ga0055539_1000103 3300003752 Bacteria 96081
8 Ga0055533_1000020 3300003756 Bacteria 353998
9 Ga0055525_1000312 3300003759 Bacteria 39548
10 Ga0055527_1000003 3300003760 Bacteria 705001
11 Ga0055542_1000066 3300003762 Bacteria 154802
12 Ga0055529_1000006 3300003763 Bacteria 416978
13 Ga0055541_1006150 3300003841 Bacteria 2056
14 Ga0070658_10000044 3300005327 Bacteria 131465
15 Ga0070658_10012739 3300005327 Bacteria 6744
16 Ga0070658_10043439 3300005327 Bacteria 3630
17 Ga0070690_100162116 3300005330 Bacteria 1533
18 Ga0070682_100140365 3300005337 Bacteria 1646
19 Ga0068868_100107459 3300005338 Bacteria 2264
20 Ga0068868_100252033 3300005338 Bacteria 1486
21 Ga0070660_100082427 3300005339 Bacteria 2526
22 Ga0070671_100073187 3300005355 Bacteria 2862
23 Ga0070659_100023566 3300005366 Bacteria 4712
24 Ga0070667_100005768 3300005367 Bacteria 10337
25 Ga0070685_10000654 3300005466 Bacteria 18932
26 Ga0068853_100098099 3300005539 Bacteria 2587
27 Ga0068855_100024554 3300005563 Bacteria 7211
28 Ga0068857_100025527 3300005577 Bacteria 5202
29 Ga0068854_100036464 3300005578 Bacteria 3448
30 Ga0068852_100074487 3300005616 Bacteria 2990
31 Ga0068851_10000001 3300005834 Bacteria 495512
32 Ga0068863_100206228 3300005841 Bacteria 1892
33 Ga0068858_100000016 3300005842 Bacteria 193130
34 Ga0075365_10013727 3300006038 Bacteria 4857
35 Ga0075365_10021363 3300006038 Bacteria 4037
36 Ga0075364_10059827 3300006051 Bacteria 2498
37 Ga0075364_10188686 3300006051 Bacteria 1396
38 Ga0105244_10037554 3300009036 Bacteria 2532
39 Ga0105240_10016049 3300009093 Bacteria 10150
40 Ga0105240_10494190 3300009093 Bacteria 1362
41 Ga0105241_10000027 3300009174 Bacteria 130768
42 Ga0105248_10000366 3300009177 Bacteria 52614
43 Ga0105237_10006078 3300009545 Bacteria 13507
44 Ga0105238_10022378 3300009551 Bacteria 6441
45 Ga0105239_10326480 3300010375 Bacteria 1731
46 Ga0157371_10000514 3300013102 Bacteria 46481
47 Ga0157370_10009846 3300013104 Bacteria 10131
48 Ga0157369_10000686 3300013105 Bacteria 43803
49 Ga0157369_10081943 3300013105 Bacteria 3453
50 Ga0157369_10146399 3300013105 Bacteria 2498
51 Ga0157369_10169992 3300013105 Bacteria 2297
52 Ga0157372_10132876 3300013307 Bacteria 2865
53 Ga0157372_10434064 3300013307 Bacteria 1531
54 Ga0197907_10107002 3300020069 Bacteria 2717
55 Ga0206354_11600683 3300020081 Bacteria 2711
56 Ga0209566_100043 3300025225 Bacteria 266609
57 Ga0209674_100001 3300025226 Bacteria 4013750
58 Ga0209672_100003 3300025228 Bacteria 1560476
59 Ga0209563_100001 3300025230 Bacteria 4013775
60 Ga0207427_100039 3300025231 Bacteria 291576
61 Ga0209437_100315 3300025233 Bacteria 63641
62 Ga0209677_100001 3300025253 Bacteria 4013787
63 Ga0209677_100568 3300025253 Bacteria 20426
64 Ga0209148_1000004 3300025254 Bacteria 1844481
65 Ga0209148_1000617 3300025254 Bacteria 31637
66 Ga0209233_1000014 3300025261 Bacteria 996641
67 Ga0209455_1000046 3300025272 Bacteria 382681
68 Ga0209455_1000504 3300025272 Bacteria 28034
69 Ga0207656_10000005 3300025321 Bacteria 490514
70 Ga0207647_10025527 3300025904 Bacteria 3880
71 Ga0207647_10050438 3300025904 Bacteria 2576
72 Ga0207705_10000001 3300025909 Bacteria 2061880
73 Ga0207705_10013338 3300025909 Bacteria 5927
74 Ga0207654_10000001 3300025911 Bacteria 1816198
75 Ga0207695_10003316 3300025913 Bacteria 22816
76 Ga0207671_10000016 3300025914 Bacteria 435413
77 Ga0207649_10163924 3300025920 Bacteria 1542
78 Ga0207694_10000022 3300025924 Bacteria 288900
79 Ga0207690_10001802 3300025932 Bacteria 13161
80 Ga0207711_10003088 3300025941 Bacteria 14520
81 Ga0207667_10009682 3300025949 Bacteria 11336
82 Ga0207667_10010805 3300025949 Bacteria 10648
83 Ga0207667_10031293 3300025949 Bacteria 5745
84 Ga0207667_10192424 3300025949 Bacteria 2093
85 Ga0207667_10245212 3300025949 Bacteria 1833
86 Ga0207703_10000075 3300026035 Bacteria 118422
87 Ga0207639_10019517 3300026041 Bacteria 4836
88 Ga0207641_10013076 3300026088 Bacteria 6808
89 Ga0207674_10079937 3300026116 Bacteria 3273
90 Ga0207675_100025357 3300026118 Bacteria 5517
91 Ga0207698_10000356 3300026142 Bacteria 26937
92 Ga0207698_10003828 3300026142 Bacteria 9107
93 Ga0207698_10043583 3300026142 Bacteria 3363
94 Ga0307515_10186445 3300028794 Bacteria 2002
95 Ga0307515_10211560 3300028794 Bacteria 1782
96 Ga0307514_10003450 3300031649 Bacteria 15193
97 Ga0307405_10291436 3300031731 Bacteria 1234
98 Ga0307413_10066482 3300031824 Bacteria 2250
99 Ga0307406_10017278 3300031901 Bacteria 4201
100 Ga0307409_100198579 3300031995 Bacteria 1792
101 Ga0395899_0003949 3300037312 Bacteria 11684
102 Ga0395900_0008824 3300037418 Bacteria 10356
103 Ga0395900_0015586 3300037418 Bacteria 7747
104 Ga0395900_0139946 3300037418 Bacteria 2479
105 Ga0395898_0001347 3300037466 Bacteria 35447
106 Ga0395898_0327428 3300037466 Bacteria 1461
107 Ga0395898_0427594 3300037466 Bacteria 1262
108 Ga0395901_0285562 3300038443 Bacteria 1714
109 Ga0451793_1577855 3300041452 Bacteria 2735
110 Ga0466972_0011093 3300044658 Bacteria 4522
111 Ga0466972_0032591 3300044658 Bacteria 2558
112 Ga0466965_0000006 3300044683 Bacteria 158069
113 Ga0466965_0008610 3300044683 Bacteria 4720
114 Ga0466965_0078207 3300044683 Bacteria 1671
115 Ga0466966_0029072 3300044684 Bacteria 3597
116 Ga0466966_0119891 3300044684 Bacteria 1617
117 Ga0466961_0047428 3300044693 Bacteria 2747
118 Ga0466971_0043577 3300044719 Bacteria 2016
119 Ga0466968_0041231 3300044735 Bacteria 1948
120 Ga0466970_0000230 3300044765 Bacteria 27280
121 Ga0466970_0005102 3300044765 Bacteria 6487
122 Ga0466970_0049452 3300044765 Bacteria 2242
123 Ga0466970_0062097 3300044765 Bacteria 2002
124 Ga0466970_0087285 3300044765 Bacteria 1691
125 Ga0466960_0016895 3300044901 Bacteria 3173
126 Ga0466960_0017556 3300044901 Bacteria 3122
127 Ga0466960_0025833 3300044901 Bacteria 2661
128 Ga0466960_0064590 3300044901 Bacteria 1805
129 Ga0466959_0018446 3300045049 Bacteria 5122
130 Ga0466959_0111315 3300045049 Bacteria 1953
131 Ga0466959_0142787 3300045049 Bacteria 1691
132 Ga0466967_0087169 3300045976 Bacteria 2830
133 Ga0466967_0317976 3300045976 Bacteria 1501
134 Ga0495590_0000140 3300046457 Bacteria 43471
135 Ga0495650_0005223 3300046471 Bacteria 8518
136 Ga0495644_0015978 3300046523 Bacteria 2876
137 Ga0495654_0111605 3300046530 Bacteria 1247
138 Ga0495645_0042205 3300046543 Bacteria 3326
139 Ga0495656_0007448 3300046615 Bacteria 3866
140 Ga0495672_0008276 3300047320 Bacteria 7704
141 Ga0495686_0134355 3300047472 Bacteria 1464
142 Ga0495626_0007907 3300048091 Bacteria 5887
143 Ga0496101_0035054 3300048904 Bacteria 3548
144 Ga0496101_0049069 3300048904 Bacteria 3035
145 Ga0496102_0077845 3300048905 Bacteria 3052
146 Ga0496103_0152019 3300048906 Bacteria 1483
147 Ga0496104_0081065 3300048907 Bacteria 3094
148 Ga0496108_0182873 3300048911 Bacteria 1816
149 Ga0496114_0040140 3300048917 Bacteria 3873
150 Ga0496114_0126034 3300048917 Bacteria 2207
151 Ga0496115_0039446 3300048918 Bacteria 3750
152 Ga0496115_0065245 3300048918 Bacteria 2940
153 Ga0496115_0080169 3300048918 Bacteria 2657
154 Ga0496117_0000048 3300048920 Bacteria 295908
155 Ga0496117_0001396 3300048920 Bacteria 35051
156 Ga0496117_0004174 3300048920 Bacteria 16157
157 Ga0496117_0071682 3300048920 Bacteria 2320
158 Ga0496118_0000450 3300048921 Bacteria 68053
159 Ga0496118_0011240 3300048921 Bacteria 8764
160 Ga0496119_0000600 3300048922 Bacteria 48758
161 Ga0496119_0004231 3300048922 Bacteria 14392
162 Ga0496119_0005854 3300048922 Bacteria 11606
163 Ga0496119_0038280 3300048922 Bacteria 3102
164 Ga0496119_0067249 3300048922 Bacteria 2114
165 Ga0496120_0000257 3300048923 Bacteria 88760
166 Ga0496120_0012403 3300048923 Bacteria 5802
167 Ga0496120_0028812 3300048923 Bacteria 3398
168 Ga0496121_0000025 3300048924 Bacteria 453467
169 Ga0496122_0001552 3300048925 Bacteria 36421
170 Ga0496122_0011495 3300048925 Bacteria 8954
171 Ga0496123_0001151 3300048926 Bacteria 39452
172 Ga0496123_0055158 3300048926 Bacteria 2609
173 Ga0496123_0060473 3300048926 Bacteria 2442
174 Ga0496124_0000070 3300048927 Bacteria 220875
175 Ga0496124_0004889 3300048927 Bacteria 15419
176 Ga0496124_0131966 3300048927 Bacteria 1983
177 Ga0496126_0000565 3300048929 Bacteria 70942
178 Ga0496126_0046640 3300048929 Bacteria 3972
179 Ga0496126_0055793 3300048929 Bacteria 3573
180 Ga0496126_0079158 3300048929 Bacteria 2910
181 Ga0496126_0136173 3300048929 Bacteria 2118
182 Ga0501031_0057204 3300049568 Bacteria 2541
183 Ga0501031_0117696 3300049568 Bacteria 1736
184 Ga0501031_0170214 3300049568 Bacteria 1423
185 Ga0501032_0008447 3300049569 Bacteria 7506
186 Ga0501032_0016994 3300049569 Bacteria 5112
187 Ga0501032_0119192 3300049569 Bacteria 1745
188 Ga0501033_0028394 3300049570 Bacteria 4203
189 Ga0501033_0028562 3300049570 Bacteria 4190
190 Ga0501033_0032340 3300049570 Bacteria 3929
191 Ga0501033_0078396 3300049570 Bacteria 2424
192 Ga0501033_0082807 3300049570 Bacteria 2352
193 Ga0501033_0169294 3300049570 Bacteria 1569
194 Ga0501034_0013045 3300049571 Bacteria 8566
195 Ga0501034_0015185 3300049571 Bacteria 7915
196 Ga0501034_0037437 3300049571 Bacteria 4912
197 Ga0501034_0066365 3300049571 Bacteria 3621
198 Ga0501034_0075457 3300049571 Bacteria 3379
199 Ga0501034_0096962 3300049571 Bacteria 2944
200 Ga0501034_0119741 3300049571 Bacteria 2619
201 Ga0501034_0141348 3300049571 Bacteria 2386
202 Ga0501034_0149897 3300049571 Bacteria 2308
203 Ga0501034_0178292 3300049571 Bacteria 2090
204 Ga0501036_0138278 3300049572 Bacteria 2055
205 Ga0501036_0246478 3300049572 Bacteria 1498
206 Ga0501036_0250980 3300049572 Bacteria 1483
207 Ga0501036_0251402 3300049572 Bacteria 1481
208 Ga0501037_0004170 3300049573 Bacteria 10482
209 Ga0501037_0007369 3300049573 Bacteria 8049
210 Ga0501037_0019476 3300049573 Bacteria 5006
211 Ga0501037_0044381 3300049573 Bacteria 3264
212 Ga0501037_0064869 3300049573 Bacteria 2660
213 Ga0501038_0015784 3300049574 Bacteria 6863
214 Ga0501038_0024947 3300049574 Bacteria 5330
215 Ga0501038_0043020 3300049574 Bacteria 3930
216 Ga0501038_0102980 3300049574 Bacteria 2375
217 Ga0501039_0006289 3300049575 Bacteria 9021
218 Ga0501039_0086412 3300049575 Bacteria 2442
219 Ga0501042_0009561 3300049578 Bacteria 6465
220 Ga0501042_0040464 3300049578 Bacteria 3314
221 Ga0501043_0003060 3300049579 Bacteria 13895
222 Ga0501043_0048310 3300049579 Bacteria 3345
223 Ga0501043_0067809 3300049579 Bacteria 2801
224 Ga0501043_0067962 3300049579 Bacteria 2798
225 Ga0501043_0117575 3300049579 Bacteria 2086
226 Ga0501046_0013802 3300049580 Bacteria 6828
227 Ga0501046_0090209 3300049580 Bacteria 2358
228 Ga0501047_0004389 3300049581 Bacteria 13274
229 Ga0501047_0006686 3300049581 Bacteria 10839
230 Ga0501047_0021912 3300049581 Bacteria 6135
231 Ga0501047_0043541 3300049581 Bacteria 4337
232 Ga0501047_0094254 3300049581 Bacteria 2873
233 Ga0501047_0198216 3300049581 Bacteria 1869
234 Ga0501067_0041342 3300049583 Bacteria 2560
235 Ga0501067_0146444 3300049583 Bacteria 1316
236 Ga0501069_0082146 3300049585 Bacteria 1816
237 Ga0501069_0195139 3300049585 Bacteria 1172
238 Ga0501070_0001295 3300049586 Bacteria 22448
239 Ga0501070_0004911 3300049586 Bacteria 11420
240 Ga0501070_0007672 3300049586 Bacteria 9155
241 Ga0501070_0032032 3300049586 Bacteria 4402
242 Ga0501070_0038851 3300049586 Bacteria 3971
243 Ga0501070_0205007 3300049586 Bacteria 1619
244 Ga0501071_0002094 3300049587 Bacteria 11974
245 Ga0501072_0071424 3300049588 Bacteria 2743
246 Ga0501073_0000012 3300049589 Bacteria 161319
247 Ga0501073_0021637 3300049589 Bacteria 4634
248 Ga0501073_0045869 3300049589 Bacteria 3077
249 Ga0501080_0000025 3300049742 Bacteria 89908
250 Ga0501080_0091732 3300049742 Bacteria 2821
251 Ga0501080_0145092 3300049742 Bacteria 2194
252 Ga0501083_0000004 3300049744 Bacteria 207886
253 Ga0501035_0014466 3300049822 Bacteria 7282
254 Ga0501035_0017311 3300049822 Bacteria 6646
255 Ga0501035_0037316 3300049822 Bacteria 4401
256 Ga0501035_0062087 3300049822 Bacteria 3324
257 Ga0501035_0062462 3300049822 Bacteria 3315
258 Ga0501035_0089580 3300049822 Bacteria 2709
259 Ga0501035_0148711 3300049822 Bacteria 2033
260 Ga0501035_0175781 3300049822 Bacteria 1847
261 Ga0501044_0018008 3300049823 Bacteria 7573
262 Ga0501044_0055726 3300049823 Bacteria 4060
263 Ga0501044_0075733 3300049823 Bacteria 3416
264 Ga0501044_0076866 3300049823 Bacteria 3387
265 Ga0501044_0163282 3300049823 Bacteria 2202
266 Ga0501044_0186869 3300049823 Bacteria 2036
267 nmdc:mga00v17_124805_c1 3300050491 Bacteria 1642
268 nmdc:mga06z11_132607_c1 3300050494 Bacteria 1400
269 nmdc:mga0sz30_69696_c1 3300050516 Bacteria 1512
270 Ga0500635_0000004 3300053080 Bacteria 210675
271 Ga0500643_000444 3300053087 Bacteria 30955
272 Ga0500650_0001165 3300053098 Bacteria 7668
273 Ga0500556_0000001 3300053104 Bacteria 1135060
274 Ga0500556_0001116 3300053104 Bacteria 13319
275 Ga0500562_000563 3300053108 Bacteria 8943
276 Ga0500593_000714 3300053117 Bacteria 12618
277 Ga0500655_008009 3300053133 Bacteria 1903
278 Ga0500559_0000330 3300053136 Bacteria 35699
279 Ga0500559_0001358 3300053136 Bacteria 14031
280 Ga0500559_0002036 3300053136 Bacteria 10820
281 Ga0500559_0006456 3300053136 Bacteria 5296
282 Ga0500568_0000003 3300053139 Bacteria 863587
283 Ga0500568_0000091 3300053139 Bacteria 85759
284 Ga0500568_0000252 3300053139 Bacteria 45616
285 Ga0500568_0002604 3300053139 Bacteria 10491
286 Ga0500573_0000011 3300053140 Bacteria 209484
287 Ga0500573_0002156 3300053140 Bacteria 9714
288 Ga0500573_0002353 3300053140 Bacteria 9418
289 Ga0500573_0007585 3300053140 Bacteria 5925
290 Ga0500573_0018288 3300053140 Bacteria 3994
291 Ga0500573_0054632 3300053140 Bacteria 2293
292 Ga0500573_0097224 3300053140 Bacteria 1659
293 Ga0500577_0002496 3300053142 Bacteria 4707
294 Ga0500577_0009311 3300053142 Bacteria 2845
295 Ga0500588_0017572 3300053146 Bacteria 1869
296 Ga0500590_001416 3300053148 Bacteria 9853
297 Ga0500616_0000040 3300053153 Bacteria 367604
298 Ga0500616_0000109 3300053153 Bacteria 152604
299 Ga0500616_0006501 3300053153 Bacteria 7645
300 Ga0500620_000313 3300053155 Bacteria 9227
301 Ga0466962_0008881 3300061719 Bacteria 4818
302 8056038148 8056037122 Bacteria 3854319
303 2643768306 2643221549 Bacteria 4042819
304 2643877888 2643221572 Bacteria 3614809
305 2644094884 2643221616 Bacteria 4066575
306 2644111734 2643221619 Bacteria 4158469
307 2644181062 2643221632 Bacteria 3406696
308 2644197967 2643221635 Bacteria 2632343
309 2644384943 2643221669 Bacteria 3611286
310 2723643080 2721755702 Bacteria 4373124
311 2753302668 2751185788 Bacteria 4541048
312 2808630440 2808606306 Bacteria 3608896
313 2808903047 2808606372 Bacteria 4649509
314 2844841424 2844841374 Bacteria 3917147
315 2844856524 2844852863 Bacteria 3849151
316 2852646379 2852643534 Bacteria 3013378
317 2857732825 2857729791 Bacteria 4040535
318 2857736077 2857733635 Bacteria 3532004
319 2857740255 2857737099 Bacteria 3104305
320 2862994554 2862993130 Bacteria 3860849
321 2870624813 2870622029 Bacteria 3643329
322 2884764325 2884763398 Bacteria 4091164
323 2895662759 2895660088 Bacteria 3782833
324 2904433530 2904430863 Bacteria 3486923
325 2904503966 2904501621 Bacteria 3401437
326 2906801849 2906799679 Bacteria 4031749
327 2908676931 2908674828 Bacteria 3382763
328 2909076893 2909074476 Bacteria 3436050
329 2919039505 2919039151 Bacteria 3391018
330 2919042904 2919042368 Bacteria 3905917
331 2919057066 2919055335 Bacteria 3875751
332 2919443598 2919443155 Bacteria 4072969
333 2919527123 2919523602 Bacteria 3788128
334 2928106135 2928104781 Bacteria 3877447
335 2928123902 2928121344 Bacteria 3972376
336 2928154827 2928153084 Bacteria 4020257
337 2928502073 2928500415 Bacteria 3384541
338 2935412191 2935409751 Bacteria 4179611
339 2939660340 2939657138 Bacteria 3740283
340 2939664250 2939660829 Bacteria 3784848
341 2964327456 2964326757 Bacteria 3290868
342 2966923658 2966921586 Bacteria 3092803
343 2966927253 2966924647 Bacteria 3268643
344 2995729142 2995726249 Bacteria 3470435
345 8002812116 8002811521 Bacteria 2942897
346 8046355661 8046352972 Bacteria 3613806
347 8055034606 8055034563 Bacteria 3562128
348 8055039661 8055037949 Bacteria 3337834
349 8057345888 8057345674 Bacteria 4160394
350 JGI24740J21852_10002853
351 JGI24735J21928_10001165
352 JGI25164J39214_1000589
353 JGI25165J46597_1000148
354 Ga0006562J51391_1023183
355 Ga0006562J51391_1023185
356 Ga0055539_1000103
357 Ga0055533_1000020
358 Ga0055525_1000312
359 Ga0055527_1000003
360 Ga0055542_1000066
361 Ga0055529_1000006
362 Ga0055541_1006150
363 Ga0070658_10000044
364 Ga0070658_10012739
365 Ga0070658_10043439
366 Ga0070690_100162116
367 Ga0070682_100140365
368 Ga0068868_100107459
369 Ga0068868_100252033
370 Ga0070660_100082427
371 Ga0070671_100073187
372 Ga0070659_100023566
373 Ga0070667_100005768
374 Ga0070685_10000654
375 Ga0068853_100098099
376 Ga0068855_100024554
377 Ga0068857_100025527
378 Ga0068854_100036464
379 Ga0068852_100074487
380 Ga0068851_10000001
381 Ga0068863_100206228
382 Ga0068858_100000016
383 Ga0075365_10013727
384 Ga0075365_10021363
385 Ga0075364_10059827
386 Ga0075364_10188686
387 Ga0105244_10037554
388 Ga0105240_10016049
389 Ga0105240_10494190
390 Ga0105241_10000027
391 Ga0105248_10000366
392 Ga0105237_10006078
393 Ga0105238_10022378
394 Ga0105239_10326480
395 Ga0157371_10000514
396 Ga0157370_10009846
397 Ga0157369_10000686
398 Ga0157369_10081943
399 Ga0157369_10146399
400 Ga0157369_10169992
401 Ga0157372_10132876
402 Ga0157372_10434064
403 Ga0197907_10107002
404 Ga0206354_11600683
405 Ga0209566_100043
406 Ga0209674_100001
407 Ga0209672_100003
408 Ga0209563_100001
409 Ga0207427_100039
410 Ga0209437_100315
411 Ga0209677_100001
412 Ga0209677_100568
413 Ga0209148_1000004
414 Ga0209148_1000617
415 Ga0209233_1000014
416 Ga0209455_1000046
417 Ga0209455_1000504
418 Ga0207656_10000005
419 Ga0207647_10025527
420 Ga0207647_10050438
421 Ga0207705_10000001
422 Ga0207705_10013338
423 Ga0207654_10000001
424 Ga0207695_10003316
425 Ga0207671_10000016
426 Ga0207649_10163924
427 Ga0207694_10000022
428 Ga0207690_10001802
429 Ga0207711_10003088
430 Ga0207667_10009682
431 Ga0207667_10010805
432 Ga0207667_10031293
433 Ga0207667_10192424
434 Ga0207667_10245212
435 Ga0207703_10000075
436 Ga0207639_10019517
437 Ga0207641_10013076
438 Ga0207674_10079937
439 Ga0207675_100025357
440 Ga0207698_10000356
441 Ga0207698_10003828
442 Ga0207698_10043583
443 Ga0307515_10186445
444 Ga0307515_10211560
445 Ga0307514_10003450
446 Ga0307405_10291436
447 Ga0307413_10066482
448 Ga0307406_10017278
449 Ga0307409_100198579
450 Ga0395899_0003949
451 Ga0395900_0008824
452 Ga0395900_0015586
453 Ga0395900_0139946
454 Ga0395898_0001347
455 Ga0395898_0327428
456 Ga0395898_0427594
457 Ga0395901_0285562
458 Ga0451793_1577855
459 Ga0466972_0011093
460 Ga0466972_0032591
461 Ga0466965_0000006
462 Ga0466965_0008610
463 Ga0466965_0078207
464 Ga0466966_0029072
465 Ga0466966_0119891
466 Ga0466961_0047428
467 Ga0466971_0043577
468 Ga0466968_0041231
469 Ga0466970_0000230
470 Ga0466970_0005102
471 Ga0466970_0049452
472 Ga0466970_0062097
473 Ga0466970_0087285
474 Ga0466960_0016895
475 Ga0466960_0017556
476 Ga0466960_0025833
477 Ga0466960_0064590
478 Ga0466959_0018446
479 Ga0466959_0111315
480 Ga0466959_0142787
481 Ga0466967_0087169
482 Ga0466967_0317976
483 Ga0495590_0000140
484 Ga0495650_0005223
485 Ga0495644_0015978
486 Ga0495654_0111605
487 Ga0495645_0042205
488 Ga0495656_0007448
489 Ga0495672_0008276
490 Ga0495686_0134355
491 Ga0495626_0007907
492 Ga0496101_0035054
493 Ga0496101_0049069
494 Ga0496102_0077845
495 Ga0496103_0152019
496 Ga0496104_0081065
497 Ga0496108_0182873
498 Ga0496114_0040140
499 Ga0496114_0126034
500 Ga0496115_0039446
501 Ga0496115_0065245
502 Ga0496115_0080169
503 Ga0496117_0000048
504 Ga0496117_0001396
505 Ga0496117_0004174
506 Ga0496117_0071682
507 Ga0496118_0000450
508 Ga0496118_0011240
509 Ga0496119_0000600
510 Ga0496119_0004231
511 Ga0496119_0005854
512 Ga0496119_0038280
513 Ga0496119_0067249
514 Ga0496120_0000257
515 Ga0496120_0012403
516 Ga0496120_0028812
517 Ga0496121_0000025
518 Ga0496122_0001552
519 Ga0496122_0011495
520 Ga0496123_0001151
521 Ga0496123_0055158
522 Ga0496123_0060473
523 Ga0496124_0000070
524 Ga0496124_0004889
525 Ga0496124_0131966
526 Ga0496126_0000565
527 Ga0496126_0046640
528 Ga0496126_0055793
529 Ga0496126_0079158
530 Ga0496126_0136173
531 Ga0501031_0057204
532 Ga0501031_0117696
533 Ga0501031_0170214
534 Ga0501032_0008447
535 Ga0501032_0016994
536 Ga0501032_0119192
537 Ga0501033_0028394
538 Ga0501033_0028562
539 Ga0501033_0032340
540 Ga0501033_0078396
541 Ga0501033_0082807
542 Ga0501033_0169294
543 Ga0501034_0013045
544 Ga0501034_0015185
545 Ga0501034_0037437
546 Ga0501034_0066365
547 Ga0501034_0075457
548 Ga0501034_0096962
549 Ga0501034_0119741
550 Ga0501034_0141348
551 Ga0501034_0149897
552 Ga0501034_0178292
553 Ga0501036_0138278
554 Ga0501036_0246478
555 Ga0501036_0250980
556 Ga0501036_0251402
557 Ga0501037_0004170
558 Ga0501037_0007369
559 Ga0501037_0019476
560 Ga0501037_0044381
561 Ga0501037_0064869
562 Ga0501038_0015784
563 Ga0501038_0024947
564 Ga0501038_0043020
565 Ga0501038_0102980
566 Ga0501039_0006289
567 Ga0501039_0086412
568 Ga0501042_0009561
569 Ga0501042_0040464
570 Ga0501043_0003060
571 Ga0501043_0048310
572 Ga0501043_0067809
573 Ga0501043_0067962
574 Ga0501043_0117575
575 Ga0501046_0013802
576 Ga0501046_0090209
577 Ga0501047_0004389
578 Ga0501047_0006686
579 Ga0501047_0021912
580 Ga0501047_0043541
581 Ga0501047_0094254
582 Ga0501047_0198216
583 Ga0501067_0041342
584 Ga0501067_0146444
585 Ga0501069_0082146
586 Ga0501069_0195139
587 Ga0501070_0001295
588 Ga0501070_0004911
589 Ga0501070_0007672
590 Ga0501070_0032032
591 Ga0501070_0038851
592 Ga0501070_0205007
593 Ga0501071_0002094
594 Ga0501072_0071424
595 Ga0501073_0000012
596 Ga0501073_0021637
597 Ga0501073_0045869
598 Ga0501080_0000025
599 Ga0501080_0091732
600 Ga0501080_0145092
601 Ga0501083_0000004
602 Ga0501035_0014466
603 Ga0501035_0017311
604 Ga0501035_0037316
605 Ga0501035_0062087
606 Ga0501035_0062462
607 Ga0501035_0089580
608 Ga0501035_0148711
609 Ga0501035_0175781
610 Ga0501044_0018008
611 Ga0501044_0055726
612 Ga0501044_0075733
613 Ga0501044_0076866
614 Ga0501044_0163282
615 Ga0501044_0186869
616 nmdc:mga00v17_124805_c1
617 nmdc:mga06z11_132607_c1
618 nmdc:mga0sz30_69696_c1
619 Ga0500635_0000004
620 Ga0500643_000444
621 Ga0500650_0001165
622 Ga0500556_0000001
623 Ga0500556_0001116
624 Ga0500562_000563
625 Ga0500593_000714
626 Ga0500655_008009
627 Ga0500559_0000330
628 Ga0500559_0001358
629 Ga0500559_0002036
630 Ga0500559_0006456
631 Ga0500568_0000003
632 Ga0500568_0000091
633 Ga0500568_0000252
634 Ga0500568_0002604
635 Ga0500573_0000011
636 Ga0500573_0002156
637 Ga0500573_0002353
638 Ga0500573_0007585
639 Ga0500573_0018288
640 Ga0500573_0054632
641 Ga0500573_0097224
642 Ga0500577_0002496
643 Ga0500577_0009311
644 Ga0500588_0017572
645 Ga0500590_001416
646 Ga0500616_0000040
647 Ga0500616_0000109
648 Ga0500616_0006501
649 Ga0500620_000313
650 Ga0466962_0008881
651 8056038148
652 2643768306
653 2643877888
654 2644094884
655 2644111734
656 2644181062
657 2644197967
658 2644384943
659 2723643080
660 2753302668
661 2808630440
662 2808903047
663 2844841424
664 2844856524
665 2852646379
666 2857732825
667 2857736077
668 2857740255
669 2862994554
670 2870624813
671 2884764325
672 2895662759
673 2904433530
674 2904503966
675 2906801849
676 2908676931
677 2909076893
678 2919039505
679 2919042904
680 2919057066
681 2919443598
682 2919527123
683 2928106135
684 2928123902
685 2928154827
686 2928502073
687 2935412191
688 2939660340
689 2939664250
690 2964327456
691 2966923658
692 2966927253
693 2995729142
694 8002812116
695 8046355661
696 8055034606
697 8055039661
698 8057345888

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF13177

DNA_pol3_delta2

DNA polymerase III, delta subunit

46

198

0.97

PF00004

AAA

ATPase family associated with various cellular activities (AAA)

63

196

0.64

Structural Annotation

Top 5 Hits

ID Description Score Start End
1njf-assembly4.cif.gz_D nucleotide bound form of an isolated e. coli clamp loader gamma subunit 0.8409 16 214
3pfi-assembly1.cif.gz_B 2.7 angstrom resolution crystal structure of a probable holliday junction dna helicase (ruvb) from campylobacter jejuni subsp. jejuni nctc 11168 in complex with adenosine-5'-diphosphate 0.8046 25 219
2chg-assembly3.cif.gz_C replication factor c domains 1 and 2 0.7852 16 214
3pfi-assembly1.cif.gz_A 2.7 angstrom resolution crystal structure of a probable holliday junction dna helicase (ruvb) from campylobacter jejuni subsp. jejuni nctc 11168 in complex with adenosine-5'-diphosphate 0.7739 25 219
4wvy-assembly1.cif.gz_A double-heterohexameric rings of full-length rvb1(atp)/rvb2(apo) 0.7717 124 219
ID Description Score Start End Superfamily
af_Q2G2X1_1_121_3.40.50.300 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;P-loop containing nucleotide triphosphate hydrolases 0.9512 59 181 3.40.50.300
af_Q2G2X1_1_121_3.40.50.300 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;P-loop containing nucleotide triphosphate hydrolases 0.9362 59 181 3.40.50.300
af_O06363_3_179_3.40.50.300 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;P-loop containing nucleotide triphosphate hydrolases 0.9225 21 177 3.40.50.300
3gliB01 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;P-loop containing nucleotide triphosphate hydrolases 0.8905 22 177 3.40.50.300
2gnoA01 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;P-loop containing nucleotide triphosphate hydrolases 0.8786 32 178 3.40.50.300
ID Description Score Start End GO Terms
AF-U1Q874-F1-model_v4 DNA polymerase III, delta' subunit domain protein 0.9555 223 389
AF-X7XQN1-F1-model_v4 deleted 0.9529 44 215
AF-A0A6J6N4S3-F1-model_v4 Unannotated protein 0.9486 175 389 GO:0003677
GO:0003887
GO:0006260
GO:0009360
AF-A0A352NGR5-F1-model_v4 DNA polymerase III subunit delta 0.9401 81 178 GO:0006261
GO:0016740
AF-A0A6L9QSE0-F1-model_v4 DNA polymerase III subunit delta (EC 2.7.7.7) 0.9366 227 392 GO:0003677
GO:0003887
GO:0006260
GO:0009360

Map