F419950

General Info

Members Datasets Scaffolds Average Seq Length
354 214 708 289

Family's Representative Sequence

Representative Sequence iso_pu_bacteria|2585428182|2588207941
Length 298
Sequence IFLTLKNEKKIKRAVSEFNTELKLKGFRAFQIEQDGNETRVYSRKEFYKICLTTGKSKIHYSDKSFEQEGTVLFFGNPHIPYSWETISTTYKGYTILFSEEFFKNSERSESLQQSSFFKIGGTPVLKITEEQRQFLNTIFQKIIAEQESDYVYKDELIRNYISLIIHESLKLEPAEDFDQNKNAASRLSSVFLELLERQFPIETTHQSLQLKSAQDFAKNLNVHVNYLNRTIKEVTGKSTTAHITERILTEAKALLQHTDWNISEMAFALGFDYPTYFNNFFKKQTGANPKAFRLTEV

Samples

Sample ID Description Type Environment
1 2162886007 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 v1 Metagenome Rhizosphere
2 2162886011 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Rhizosphere Soil Replicate 1: eDNA_1 v2 (version 2) Metagenome Rhizosphere
3 3300001979 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6 Metagenome Rhizosphere
4 3300001989 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5 Metagenome Rhizosphere
5 3300002067 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C1 Metagenome Rhizosphere
6 3300002738 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mTSA Metagenome Unclassified
7 3300003316 Sugarcane root Sample L1 Metagenome Unclassified
8 3300003320 Sugarcane root Sample H2 Metagenome Unclassified
9 3300003322 Sugarcane root Sample L2 Metagenome Unclassified
10 3300003323 Sugarcane root Sample H1 Metagenome Unclassified
11 3300003762 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mMF_r2 Metagenome Endosphere
12 3300003784 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mLB_r2 Metagenome Endosphere
13 3300005288 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Rhizosphere Soil Replicate 2: eDNA_1 v2 (version 2) Metagenome Rhizosphere
14 3300005289 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 v2 (version 2) Metagenome Rhizosphere
15 3300005290 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Rhizosphere Soil Replicate 1: eDNA_1 v3 (version 3) Metagenome Rhizosphere
16 3300005295 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL3 v2 (version 2) Metagenome Rhizosphere
17 3300005329 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG Metagenome Rhizosphere
18 3300005331 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG Metagenome Rhizosphere
19 3300005334 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 Metagenome Rhizosphere
20 3300005336 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG Metagenome Rhizosphere
21 3300005337 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3L metaG Metagenome Rhizosphere
22 3300005338 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 Metagenome Rhizosphere
23 3300005339 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG Metagenome Rhizosphere
24 3300005340 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG Metagenome Rhizosphere
25 3300005344 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG Metagenome Rhizosphere
26 3300005353 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG Metagenome Rhizosphere
27 3300005354 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG Metagenome Rhizosphere
28 3300005364 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG Metagenome Rhizosphere
29 3300005365 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3H metaG Metagenome Rhizosphere
30 3300005444 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-1 metaG Metagenome Rhizosphere
31 3300005455 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG Metagenome Rhizosphere
32 3300005457 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG Metagenome Rhizosphere
33 3300005459 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 Metagenome Rhizosphere
34 3300005466 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3L metaG Metagenome Rhizosphere
35 3300005530 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG Metagenome Rhizosphere
36 3300005535 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG Metagenome Rhizosphere
37 3300005543 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG Metagenome Rhizosphere
38 3300005544 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3L metaG Metagenome Rhizosphere
39 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
40 3300005564 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG Metagenome Rhizosphere
41 3300005577 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 Metagenome Rhizosphere
42 3300005616 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 Metagenome Rhizosphere
43 3300005617 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 Metagenome Rhizosphere
44 3300005618 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 Metagenome Rhizosphere
45 3300005719 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 Metagenome Rhizosphere
46 3300005841 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 Metagenome Rhizosphere
47 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
48 3300006195 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 Metagenome Endosphere
49 3300006237 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2) (version 2) Metagenome Rhizosphere
50 3300006358 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 Metagenome Rhizosphere
51 3300006931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 (version 2) (version 2) Metagenome Rhizosphere
52 3300006946 Root nodule microbial communities of legume samples collected from California, USA - Medicago truncatula BG Metagenome Nodule
53 3300009036 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-4 metaG Metagenome Rhizosphere
54 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
55 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
56 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
57 3300009148 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG Metagenome Rhizosphere
58 3300009176 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG Metagenome Rhizosphere
59 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
60 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
61 3300013100 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6-5 metaG Metagenome Rhizosphere
62 3300013102 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG Metagenome Rhizosphere
63 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
64 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
65 3300013296 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG Metagenome Rhizosphere
66 3300013297 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG Metagenome Rhizosphere
67 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
68 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
69 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
70 3300014325 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG Metagenome Rhizosphere
71 3300014326 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG Metagenome Rhizosphere
72 3300014497 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-129_1 metaG Metagenome Rhizosphere
73 3300014745 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M5-5 metaG Metagenome Rhizosphere
74 3300014968 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG Metagenome Rhizosphere
75 3300014969 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG Metagenome Rhizosphere
76 3300015261 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-104_1 MetaG Metagenome Rhizosphere
77 3300017792 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG Metagenome Rhizosphere
78 3300025242 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mTSA_r2 (SPAdes) (version 2) Metagenome Endosphere
79 3300025246 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mTSA (SPAdes) (version 2) Metagenome Unclassified
80 3300025250 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mCL (SPAdes) (version 2) Metagenome Unclassified
81 3300025254 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mMF_r2 (SPAdes) (version 2) Metagenome Endosphere
82 3300025291 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mLB_r2 (SPAdes) (version 3) Metagenome Endosphere
83 3300025728 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
84 3300025903 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
85 3300025904 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2 (SPAdes) (version 2) Metagenome Rhizosphere
86 3300025907 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
87 3300025914 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
88 3300025920 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
89 3300025923 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
90 3300025925 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
91 3300025926 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
92 3300025933 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
93 3300025934 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
94 3300025935 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
95 3300025936 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG (SPAdes) (version 2) Metagenome Rhizosphere
96 3300025940 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
97 3300025942 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes) (version 2) Metagenome Rhizosphere
98 3300025944 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
99 3300025945 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
100 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
101 3300025960 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
102 3300025961 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
103 3300025972 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
104 3300026023 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 (SPAdes) (version 2) Metagenome Rhizosphere
105 3300026067 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
106 3300026088 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes) (version 2) Metagenome Rhizosphere
107 3300026089 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes) (version 2) Metagenome Rhizosphere
108 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
109 3300026118 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes) (version 2) Metagenome Rhizosphere
110 3300027111 Root nodule microbial communities of legume samples collected from California, USA - Medicago truncatula BG (SPAdes) (version 2) Metagenome Nodule
111 3300028381 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) Metagenome Rhizosphere
112 3300028794 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM Metagenome Unclassified
113 3300030732 Rhizosphere soil microbial communities in infected wheat plant from Wellcamp field in Toowoomba, Australia - sample 1 Metagenome Rhizosphere
114 3300030742 Rhizosphere soil microbial communities in a healthy wheat plant from a non-infected Wellcamp field in Toowoomba, Australia - sample 9 Metagenome Rhizosphere
115 3300031548 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3 Metagenome Rhizosphere
116 3300031731 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-1 Metagenome Rhizosphere
117 3300031852 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-3 Metagenome Rhizosphere
118 3300031903 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-1 Metagenome Rhizosphere
119 3300031911 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1 Metagenome Rhizosphere
120 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
121 3300032004 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3 Metagenome Rhizosphere
122 3300032005 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-1 Metagenome Rhizosphere
123 3300033180 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 12_EM Metagenome Unclassified
124 3300037312 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_B SG_2 Metagenome Rhizosphere
125 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
126 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
127 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
128 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
129 3300041997 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0317DE14Z082817_5607 Metagenome Rhizosphere
130 3300042002 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0612DE14Z082817_5616 Metagenome Rhizosphere
131 3300042007 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0612DE14Z070717_5290 Metagenome Rhizosphere
132 3300042435 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0503WE14Z082817_5613 Metagenome Rhizosphere
133 3300044656 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA1R Metagenome Rhizosphere
134 3300044684 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC4R Metagenome Rhizosphere
135 3300044693 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC2R Metagenome Rhizosphere
136 3300044765 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA2R Metagenome Rhizosphere
137 3300045049 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC3R Metagenome Rhizosphere
138 3300045836 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC4R Metagenome Rhizosphere
139 3300046453 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co3_8_57 rhizosphere Metagenome Rhizosphere
140 3300046492 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co3_21_57 rhizosphere Metagenome Rhizosphere
141 3300046499 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-234-CL1_24_28 rhizosphere Metagenome Rhizosphere
142 3300046500 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co1_23_3 rhizosphere Metagenome Rhizosphere
143 3300046507 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co2_62_14 rhizosphere Metagenome Rhizosphere
144 3300046519 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co2_51_16 rhizosphere Metagenome Rhizosphere
145 3300046522 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 rhizosphere Metagenome Rhizosphere
146 3300046525 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co1_23_6 rhizosphere Metagenome Rhizosphere
147 3300046530 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-866-Co1_10_5 rhizosphere Metagenome Rhizosphere
148 3300046558 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co3_6_53 rhizosphere Metagenome Rhizosphere
149 3300046660 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co1_32_7 rhizosphere Metagenome Rhizosphere
150 3300046794 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-133-Co1_27_3 rhizosphere Metagenome Rhizosphere
151 3300046810 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co2_51_17 rhizosphere Metagenome Rhizosphere
152 3300047472 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co2_54_22 rhizosphere Metagenome Rhizosphere
153 3300048913 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4c N15 Metagenome Rhizoplane
154 3300048919 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_7x unlabeled Metagenome Unclassified
155 3300048920 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1e N15 Metagenome Unclassified
156 3300048921 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1f N15 Metagenome Unclassified
157 3300048924 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_3e N15 Metagenome Unclassified
158 3300048925 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8x unlabeled Metagenome Unclassified
159 3300048926 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8y unlabeled Metagenome Unclassified
160 3300048928 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_5e N15 Metagenome Unclassified
161 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
162 3300049663 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - I4_A_2_drought Metagenome Rhizosphere
163 3300049679 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - G11_B_3_drought Metagenome Rhizosphere
164 3300049703 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - J2_A_2_control Metagenome Rhizosphere
165 3300049705 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - C1_A_2_drought Metagenome Rhizosphere
166 3300049758 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - D15_A_3_drought Metagenome Rhizosphere
167 3300049776 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - H24_A_5_drought Metagenome Rhizosphere
168 3300050493 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 re-annotation Metagenome Endosphere
169 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
170 3300050511 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation Metagenome Rhizosphere
171 3300053086 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co2_62_14 endosphere Metagenome Endosphere
172 3300053090 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co3_31_39 endosphere Metagenome Endosphere
173 3300053093 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co2_62_24 endosphere Metagenome Endosphere
174 3300053096 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co1_14_4 endosphere Metagenome Endosphere
175 3300053118 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co3_13_34 endosphere Metagenome Endosphere
176 3300053122 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL3_77_6 endosphere Metagenome Endosphere
177 3300053146 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-351-Co2_42_17 endosphere Metagenome Endosphere
178 3300053153 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 endosphere Metagenome Endosphere
179 3300053156 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 endosphere Metagenome Endosphere
180 3300053726 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL1_27_10 endosphere Metagenome Endosphere
181 3300055283 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-4579-CL1_25_23_RD_R2 endosphere Metagenome Endosphere
182 3300061719 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC2R1 Metagenome Rhizosphere
183 2585428182 Chryseobacterium sp. YR477 Isolate Rhizosphere
184 2513020052 Flavobacterium sp. CF136 Isolate Rhizosphere
185 2582581873 Chryseobacterium sp. OV259 Isolate Rhizosphere
186 2585428187 Chryseobacterium sp. YR460 Isolate Rhizosphere
187 2599185184 Mucilaginibacter sp. NFR10 Isolate Rhizoplane
188 2721755487 Sphingobacterium sp. B29 Isolate Rhizosphere
189 2738541279 Flavobacterium sp. GV069 Isolate Unclassified
190 2738541285 Flavobacterium sp. GV030 Isolate Unclassified
191 2738543007 Flavobacterium sp. GV063 Isolate Unclassified
192 2738543023 Pedobacter sp. OK628 Isolate Unclassified
193 2751185877 Chryseobacterium artocarpi UTM-3 Isolate Rhizosphere
194 2816332188 Chryseobacterium aquifrigidense 110 (version 2) Isolate Unclassified
195 2818991442 Chitinophaga pinensis 1204 Isolate Unclassified
196 2842722452 Pedobacter sp. R-72249 Isolate Unclassified
197 2842903701 Olivibacter sp. R-72191 Isolate Unclassified
198 2842909656 Pedobacter sp. R-72393 Isolate Unclassified
199 2889290771 Chryseobacterium sp. PvR013 Isolate Rhizosphere
200 2928078545 Mucilaginibacter rubeus 1215 Isolate Unclassified
201 2928147474 Mucilaginibacter rubeus 2025 Isolate Unclassified
202 2929150217 Flavobacterium sp. R-74510 Hybrid assembly Isolate Unclassified
203 2929177148 Chitinophaga sp. R-72269 Hybrid assembly Isolate Unclassified
204 2929239360 Chitinophaga sp. R-73072 Hybrid assembly Isolate Unclassified
205 2929921140 Chitinophaga sp. R-72609 Hybrid assembly Isolate Unclassified
206 2932082852 Mucilaginibacter sp. 3215 Isolate Rhizosphere
207 2945924605 Chryseobacterium ginsenosidimutans W1I9 Isolate Rhizosphere
208 2945977869 Chitinophaga sp. W2I13 Isolate Rhizosphere
209 2946013367 Chitinophaga sp. W3I9 Isolate Rhizosphere
210 2954016120 Flavobacterium sp. W4I14 Isolate Rhizosphere
211 2984572630 Chryseobacterium sp. SORGH_AS909 Isolate Aerial Root
212 2984606641 Chryseobacterium sp. SORGH_AS1175 Isolate Aerial Root
213 2993372514 Chryseobacterium sp. SLBN-27 Isolate Rhizosphere
214 8055419101 Flavobacterium tyrosinilyticum KCTC 42726 Isolate Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 90.4
Metatranscriptomes 0
Isolates 9.6

Biome Distribution

Category Percentage (%)
Aerial Root 0.56
Bulb 0
Endosphere 5.37
Nodule 0.56
Rhizoplane 0.56
Rhizosphere 81.36
Stem 0
Stem Tuber 0
Unclassified 6.5

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 SwRhRL2b_contig_1382251 2162886007 Bacteria 1790
2 MRS1b_contig_718694 2162886011 Unclassified 1388
3 JGI24740J21852_10003055 3300001979 Bacteria 7401
4 JGI24739J22299_10057258 3300001989 Bacteria 1241
5 JGI24735J21928_10000002 3300002067 Bacteria 624895
6 JGI25154J39366_1000073 3300002738 Bacteria 92928
7 rootH1_10055678 3300003316 Bacteria 19068
8 rootH1_10120336 3300003316 Bacteria 3301
9 rootH1_10121111 3300003316 Bacteria 3208
10 rootH2_10025779 3300003320 Bacteria 23337
11 rootH2_10242480 3300003320 Unclassified 1208
12 rootH2_10271356 3300003320 Bacteria 1325
13 rootL2_10156854 3300003322 Bacteria 3220
14 rootH1_10056865 3300003323 Bacteria 14713
15 Ga0055542_1005177 3300003762 Bacteria 2996
16 Ga0055534_1005231 3300003784 Bacteria 3531
17 Ga0065714_10002207 3300005288 Bacteria 86097
18 Ga0065714_10004788 3300005288 Bacteria 8946
19 Ga0065714_10079192 3300005288 Bacteria 2536
20 Ga0065714_10080514 3300005288 Bacteria 2435
21 Ga0065704_10000199 3300005289 Bacteria 297176
22 Ga0065704_10072765 3300005289 Bacteria 8042
23 Ga0065704_10076744 3300005289 Bacteria 4993
24 Ga0065704_10078064 3300005289 Bacteria 4537
25 Ga0065704_10091636 3300005289 Bacteria 2704
26 Ga0065712_10070401 3300005290 Bacteria 6045
27 Ga0065712_10155261 3300005290 Bacteria 1329
28 Ga0065707_10241243 3300005295 Bacteria 1155
29 Ga0070683_100035062 3300005329 Bacteria 4587
30 Ga0070670_100241246 3300005331 Unclassified 1573
31 Ga0070670_100377727 3300005331 Bacteria 1248
32 Ga0070670_100638293 3300005331 Unclassified 955
33 Ga0068869_100002374 3300005334 Bacteria 11330
34 Ga0068869_100020964 3300005334 Bacteria 4491
35 Ga0070680_100236206 3300005336 Bacteria 1544
36 Ga0070682_100001009 3300005337 Bacteria 16310
37 Ga0068868_100032781 3300005338 Bacteria 3998
38 Ga0070660_100503076 3300005339 Bacteria 1008
39 Ga0070689_100003622 3300005340 Bacteria 10300
40 Ga0070689_100004849 3300005340 Bacteria 9127
41 Ga0070661_100019528 3300005344 Bacteria 4830
42 Ga0070669_100078947 3300005353 Bacteria 2447
43 Ga0070669_100150054 3300005353 Bacteria 1804
44 Ga0070675_100005674 3300005354 Bacteria 9555
45 Ga0070675_100200740 3300005354 Unclassified 1731
46 Ga0070675_100315025 3300005354 Bacteria 1381
47 Ga0070673_100509647 3300005364 Unclassified 1089
48 Ga0070688_100002757 3300005365 Bacteria 8926
49 Ga0070688_100006541 3300005365 Bacteria 6232
50 Ga0070694_100284459 3300005444 Bacteria 1262
51 Ga0070663_100024785 3300005455 Bacteria 4042
52 Ga0070663_100170096 3300005455 Bacteria 1684
53 Ga0070662_100165781 3300005457 Unclassified 1731
54 Ga0068867_100542215 3300005459 Bacteria 1006
55 Ga0070685_10002205 3300005466 Bacteria 10052
56 Ga0070685_10119281 3300005466 Bacteria 1636
57 Ga0070679_100323609 3300005530 Bacteria 1491
58 Ga0070684_100003455 3300005535 Bacteria 11856
59 Ga0070672_100063428 3300005543 Bacteria 2918
60 Ga0070686_100359722 3300005544 Bacteria 1096
61 Ga0068855_100023624 3300005563 Bacteria 7364
62 Ga0068855_100026816 3300005563 Bacteria 6893
63 Ga0068855_100307294 3300005563 Unclassified 1755
64 Ga0068855_100529799 3300005563 Bacteria 1277
65 Ga0070664_100000670 3300005564 Bacteria 26132
66 Ga0068857_100087870 3300005577 Bacteria 2781
67 Ga0068852_100500521 3300005616 Bacteria 1210
68 Ga0068859_100003995 3300005617 Bacteria 15034
69 Ga0068859_100015090 3300005617 Bacteria 7756
70 Ga0068859_100207300 3300005617 Bacteria 2046
71 Ga0068864_100000994 3300005618 Bacteria 23711
72 Ga0068861_100067024 3300005719 Bacteria 2769
73 Ga0068863_100371342 3300005841 Bacteria 1396
74 Ga0068860_100048525 3300005843 Bacteria 4047
75 Ga0068860_100066718 3300005843 Bacteria 3419
76 Ga0068860_100208345 3300005843 Unclassified 1896
77 Ga0075366_10035350 3300006195 Bacteria 2946
78 Ga0097621_100523765 3300006237 Bacteria 1076
79 Ga0068871_100000114 3300006358 Bacteria 49426
80 Ga0068871_100010739 3300006358 Bacteria 6696
81 Ga0097620_100003995 3300006931 Bacteria 15034
82 Ga0097620_100015090 3300006931 Bacteria 7756
83 Ga0097620_100207317 3300006931 Bacteria 2046
84 Ga0079104_1000005 3300006946 Bacteria 407099
85 Ga0105244_10000004 3300009036 Bacteria 492478
86 Ga0105244_10000343 3300009036 Bacteria 43808
87 Ga0105240_10427675 3300009093 Bacteria 1486
88 Ga0111539_10161988 3300009094 Bacteria 2616
89 Ga0111539_10515613 3300009094 Bacteria 1393
90 Ga0114129_10004913 3300009147 Bacteria 18871
91 Ga0105243_10008205 3300009148 Bacteria 8021
92 Ga0105243_10033659 3300009148 Unclassified 3964
93 Ga0105242_10132614 3300009176 Bacteria 2153
94 Ga0105242_10418922 3300009176 Bacteria 1254
95 Ga0105237_10002370 3300009545 Bacteria 23380
96 Ga0105237_10010276 3300009545 Bacteria 9969
97 Ga0105237_10828559 3300009545 Bacteria 932
98 Ga0105239_10051806 3300010375 Bacteria 4499
99 Ga0105239_10095125 3300010375 Bacteria 3291
100 Ga0157373_10000009 3300013100 Bacteria 201551
101 Ga0157373_10000502 3300013100 Bacteria 30851
102 Ga0157373_10016534 3300013100 Bacteria 5379
103 Ga0157371_10000258 3300013102 Bacteria 73082
104 Ga0157371_10001004 3300013102 Bacteria 31148
105 Ga0157371_10009402 3300013102 Bacteria 7697
106 Ga0157371_10018590 3300013102 Bacteria 5135
107 Ga0157371_10023559 3300013102 Bacteria 4501
108 Ga0157370_10006550 3300013104 Bacteria 12825
109 Ga0157370_10008916 3300013104 Bacteria 10777
110 Ga0157370_10013235 3300013104 Bacteria 8501
111 Ga0157370_10024013 3300013104 Bacteria 6045
112 Ga0157370_10043720 3300013104 Bacteria 4309
113 Ga0157370_10049875 3300013104 Bacteria 4003
114 Ga0157370_10133516 3300013104 Bacteria 2315
115 Ga0157370_10179571 3300013104 Bacteria 1967
116 Ga0157370_10247748 3300013104 Bacteria 1648
117 Ga0157370_10287540 3300013104 Unclassified 1519
118 Ga0157369_10000219 3300013105 Bacteria 79491
119 Ga0157369_10000961 3300013105 Bacteria 36565
120 Ga0157369_10045419 3300013105 Bacteria 4777
121 Ga0157374_10000966 3300013296 Bacteria 24956
122 Ga0157374_10535793 3300013296 Bacteria 1178
123 Ga0157378_10035499 3300013297 Bacteria 4410
124 Ga0157378_10106348 3300013297 Bacteria 2566
125 Ga0163162_10000404 3300013306 Bacteria 39585
126 Ga0163162_10007933 3300013306 Bacteria 10351
127 Ga0163162_10127625 3300013306 Bacteria 2651
128 Ga0163162_10269337 3300013306 Bacteria 1835
129 Ga0163162_10319827 3300013306 Bacteria 1684
130 Ga0163162_10399354 3300013306 Bacteria 1507
131 Ga0157372_10000070 3300013307 Bacteria 109649
132 Ga0157372_10002858 3300013307 Bacteria 18659
133 Ga0157372_10046495 3300013307 Bacteria 4818
134 Ga0157372_10053231 3300013307 Bacteria 4510
135 Ga0157375_10001677 3300013308 Bacteria 19068
136 Ga0157375_10069636 3300013308 Bacteria 3525
137 Ga0157375_10118571 3300013308 Bacteria 2753
138 Ga0157375_10248895 3300013308 Bacteria 1938
139 Ga0163163_10000836 3300014325 Bacteria 26189
140 Ga0163163_10457904 3300014325 Bacteria 1336
141 Ga0157380_10012083 3300014326 Bacteria 6250
142 Ga0157380_10016196 3300014326 Bacteria 5493
143 Ga0157380_10029430 3300014326 Bacteria 4197
144 Ga0157380_10067313 3300014326 Bacteria 2883
145 Ga0157380_10102350 3300014326 Bacteria 2388
146 Ga0157380_10367489 3300014326 Bacteria 1352
147 Ga0182008_10000028 3300014497 Bacteria 176968
148 Ga0182008_10002301 3300014497 Bacteria 12043
149 Ga0157377_10003455 3300014745 Bacteria 7157
150 Ga0157377_10008980 3300014745 Bacteria 4895
151 Ga0157379_10020089 3300014968 Bacteria 5903
152 Ga0157379_10046005 3300014968 Bacteria 3896
153 Ga0157379_10259387 3300014968 Bacteria 1579
154 Ga0157376_10006720 3300014969 Bacteria 8142
155 Ga0157376_10015031 3300014969 Bacteria 5836
156 Ga0157376_10268403 3300014969 Bacteria 1602
157 Ga0182006_1000110 3300015261 Bacteria 88392
158 Ga0182006_1017819 3300015261 Bacteria 3011
159 Ga0163161_10000012 3300017792 Bacteria 264639
160 Ga0163161_10000422 3300017792 Bacteria 35604
161 Ga0163161_10028035 3300017792 Bacteria 3997
162 Ga0209258_100193 3300025242 Bacteria 124682
163 Ga0209646_1000158 3300025246 Bacteria 92980
164 Ga0209646_1006712 3300025246 Bacteria 1920
165 Ga0209026_1000168 3300025250 Bacteria 100138
166 Ga0209148_1000167 3300025254 Bacteria 135407
167 Ga0209675_1000035 3300025291 Bacteria 255411
168 Ga0209675_1000263 3300025291 Bacteria 51088
169 Ga0207655_1000008 3300025728 Bacteria 734289
170 Ga0207655_1001003 3300025728 Bacteria 28719
171 Ga0207680_10131273 3300025903 Bacteria 1651
172 Ga0207647_10033221 3300025904 Bacteria 3304
173 Ga0207647_10116602 3300025904 Bacteria 1576
174 Ga0207645_10131948 3300025907 Bacteria 1626
175 Ga0207671_10001876 3300025914 Bacteria 23384
176 Ga0207671_10011873 3300025914 Bacteria 7047
177 Ga0207649_10137567 3300025920 Bacteria 1667
178 Ga0207681_10024385 3300025923 Bacteria 3882
179 Ga0207681_10071357 3300025923 Bacteria 2422
180 Ga0207650_10082178 3300025925 Unclassified 2445
181 Ga0207650_10380296 3300025925 Unclassified 1166
182 Ga0207650_10448357 3300025925 Bacteria 1074
183 Ga0207650_10565669 3300025925 Bacteria 954
184 Ga0207659_10073381 3300025926 Bacteria 2505
185 Ga0207659_10397659 3300025926 Bacteria 1152
186 Ga0207659_10495288 3300025926 Bacteria 1034
187 Ga0207659_10533393 3300025926 Bacteria 996
188 Ga0207706_10403616 3300025933 Unclassified 1185
189 Ga0207686_10296097 3300025934 Bacteria 1200
190 Ga0207709_10440865 3300025935 Unclassified 1004
191 Ga0207670_10002197 3300025936 Bacteria 10202
192 Ga0207670_10007771 3300025936 Bacteria 6015
193 Ga0207691_10057703 3300025940 Bacteria 3532
194 Ga0207691_10101926 3300025940 Bacteria 2561
195 Ga0207691_10131307 3300025940 Bacteria 2213
196 Ga0207691_10268765 3300025940 Bacteria 1469
197 Ga0207689_10009986 3300025942 Bacteria 8184
198 Ga0207689_10036473 3300025942 Bacteria 4081
199 Ga0207689_10116552 3300025942 Bacteria 2196
200 Ga0207689_10209002 3300025942 Bacteria 1612
201 Ga0207661_10011964 3300025944 Bacteria 6303
202 Ga0207679_10019149 3300025945 Bacteria 4595
203 Ga0207667_10049953 3300025949 Bacteria 4414
204 Ga0207667_10063651 3300025949 Bacteria 3854
205 Ga0207667_10097048 3300025949 Bacteria 3042
206 Ga0207667_10415008 3300025949 Unclassified 1370
207 Ga0207651_10016385 3300025960 Bacteria 4340
208 Ga0207651_10181093 3300025960 Bacteria 1672
209 Ga0207651_10522954 3300025960 Unclassified 1028
210 Ga0207712_10269551 3300025961 Bacteria 1384
211 Ga0207712_10625546 3300025961 Bacteria 933
212 Ga0207668_10042528 3300025972 Bacteria 3078
213 Ga0207677_10123550 3300026023 Bacteria 1952
214 Ga0207678_10039209 3300026067 Bacteria 4112
215 Ga0207678_10099161 3300026067 Bacteria 2488
216 Ga0207641_10230444 3300026088 Bacteria 1721
217 Ga0207648_10255003 3300026089 Unclassified 1564
218 Ga0207674_10003111 3300026116 Bacteria 20480
219 Ga0207674_10026709 3300026116 Bacteria 6125
220 Ga0207674_10118498 3300026116 Bacteria 2617
221 Ga0207675_100026005 3300026118 Bacteria 5448
222 Ga0209281_1000216 3300027111 Bacteria 125724
223 Ga0268264_10133729 3300028381 Bacteria 2203
224 Ga0268264_10269963 3300028381 Bacteria 1589
225 Ga0268264_10471938 3300028381 Eukaryota 1219
226 Ga0307515_10278342 3300028794 Bacteria 1384
227 Ga0316176_1118316 3300030732 Bacteria 9954
228 Ga0316183_1208293 3300030742 Bacteria 35492
229 Ga0307408_100001263 3300031548 Bacteria 18977
230 Ga0307408_100002471 3300031548 Bacteria 12958
231 Ga0307405_10000003 3300031731 Bacteria 569064
232 Ga0307410_10000266 3300031852 Bacteria 19991
233 Ga0307407_10000008 3300031903 Bacteria 191228
234 Ga0307412_10000017 3300031911 Bacteria 294698
235 Ga0307412_10000572 3300031911 Bacteria 21858
236 Ga0307416_100000009 3300032002 Bacteria 374271
237 Ga0307414_10000279 3300032004 Bacteria 30372
238 Ga0307414_10007215 3300032004 Bacteria 6237
239 Ga0307414_10029104 3300032004 Unclassified 3591
240 Ga0307414_10029391 3300032004 Bacteria 3577
241 Ga0307414_10037133 3300032004 Unclassified 3259
242 Ga0307414_10280182 3300032004 Bacteria 1400
243 Ga0307411_10069342 3300032005 Bacteria 2381
244 Ga0307510_10010767 3300033180 Bacteria 10877
245 Ga0395899_0000087 3300037312 Bacteria 157502
246 Ga0395899_0004577 3300037312 Bacteria 10779
247 Ga0395900_0060225 3300037418 Bacteria 3907
248 Ga0395900_0288966 3300037418 Bacteria 1629
249 Ga0395900_0611664 3300037418 Bacteria 1029
250 Ga0395898_0007001 3300037466 Bacteria 11983
251 Ga0395905_0006896 3300037471 Bacteria 11356
252 Ga0395905_0178786 3300037471 Bacteria 1992
253 Ga0395901_0001623 3300038443 Bacteria 23267
254 Ga0439431_0007604 3300041997 Bacteria 2420
255 Ga0439442_013190 3300042002 Bacteria 1695
256 Ga0439449_0004326 3300042007 Bacteria 5486
257 Ga0439449_0037779 3300042007 Unclassified 1796
258 Ga0439434_0008140 3300042435 Bacteria 3073
259 Ga0466969_0000179 3300044656 Bacteria 34089
260 Ga0466969_0034855 3300044656 Bacteria 2549
261 Ga0466969_0142309 3300044656 Bacteria 1108
262 Ga0466966_0000014 3300044684 Bacteria 127891
263 Ga0466966_0053484 3300044684 Bacteria 2561
264 Ga0466961_0048149 3300044693 Bacteria 2725
265 Ga0466961_0161662 3300044693 Bacteria 1396
266 Ga0466970_0240524 3300044765 Unclassified 1013
267 Ga0466959_0000011 3300045049 Bacteria 173387
268 Ga0466959_0004493 3300045049 Bacteria 9346
269 Ga0466959_0009748 3300045049 Bacteria 6842
270 Ga0466958_0087973 3300045836 Bacteria 1919
271 Ga0495627_000003 3300046453 Bacteria 704557
272 Ga0495585_0001034 3300046492 Bacteria 23127
273 Ga0495594_0144014 3300046499 Bacteria 1352
274 Ga0495596_0002153 3300046500 Bacteria 10746
275 Ga0495606_0004913 3300046507 Bacteria 13080
276 Ga0495606_0013207 3300046507 Bacteria 6551
277 Ga0495632_0004127 3300046519 Bacteria 9987
278 Ga0495643_0002808 3300046522 Bacteria 13304
279 Ga0495663_0000039 3300046525 Bacteria 68141
280 Ga0495654_0000001 3300046530 Bacteria 1513197
281 Ga0495633_0000562 3300046558 Bacteria 36317
282 Ga0495625_0001175 3300046660 Bacteria 33641
283 Ga0495625_0006572 3300046660 Bacteria 10318
284 Ga0495589_0029838 3300046794 Bacteria 2749
285 Ga0495660_0029825 3300046810 Bacteria 3076
286 Ga0495686_0002441 3300047472 Bacteria 17556
287 Ga0496110_0222871 3300048913 Bacteria 1715
288 Ga0496116_0011970 3300048919 Bacteria 7126
289 Ga0496117_0004077 3300048920 Bacteria 16401
290 Ga0496118_0027056 3300048921 Bacteria 4864
291 Ga0496121_0000008 3300048924 Bacteria 843593
292 Ga0496122_0001730 3300048925 Bacteria 33861
293 Ga0496122_0006098 3300048925 Bacteria 14037
294 Ga0496123_0009476 3300048926 Bacteria 8765
295 Ga0496123_0075918 3300048926 Bacteria 2071
296 Ga0496125_0000181 3300048928 Bacteria 138133
297 Ga0496126_0001001 3300048929 Bacteria 48107
298 Ga0496126_0043146 3300048929 Bacteria 4162
299 Ga0501223_001389 3300049663 Bacteria 5589
300 Ga0501249_000054 3300049679 Bacteria 43438
301 Ga0501219_000601 3300049703 Bacteria 5231
302 Ga0501225_0000755 3300049705 Bacteria 10139
303 Ga0501241_000006 3300049758 Bacteria 149999
304 Ga0501241_002108 3300049758 Bacteria 3891
305 Ga0501280_000492 3300049776 Bacteria 9376
306 nmdc:mga0k408_51166_c1 3300050493 Bacteria 2393
307 nmdc:mga05p37_7598_c1 3300050507 Bacteria 12789
308 nmdc:mga08y16_361846_c1 3300050511 Bacteria 1489
309 Ga0500578_0001655 3300053086 Bacteria 21459
310 Ga0500646_0010855 3300053090 Bacteria 2339
311 Ga0500651_0000148 3300053093 Bacteria 44606
312 Ga0500641_0000732 3300053096 Bacteria 11899
313 Ga0500594_0014423 3300053118 Bacteria 1892
314 Ga0500608_000292 3300053122 Bacteria 19418
315 Ga0500588_0056546 3300053146 Bacteria 1242
316 Ga0500616_0096615 3300053153 Bacteria 1452
317 Ga0500622_0000127 3300053156 Bacteria 80179
318 Ga0500584_019937 3300053726 Bacteria 3111
319 Ga0500661_007643 3300055283 Unclassified 1996
320 Ga0466962_0007942 3300061719 Bacteria 5089
321 2588207941 2585428182 Bacteria 5007281
322 2513235159 2513020052 Bacteria 5120511
323 2585425565 2582581873 Bacteria 3032664
324 2588209723 2585428182 Bacteria 5007281
325 2588234082 2585428187 Bacteria 4629388
326 2599478445 2599185184 Bacteria 6430550
327 2722727869 2721755487 Bacteria 6357185
328 2738732265 2738541279 Bacteria 6149495
329 2738764830 2738541285 Bacteria 6150075
330 2739213845 2738543007 Bacteria 6149845
331 2739301361 2738543023 Bacteria 6767879
332 2753671098 2751185877 Bacteria 4921427
333 2816873274 2816332188 Bacteria 5133218
334 2816873839 2816332188 Bacteria 5133218
335 2819577589 2818991442 Bacteria 8318214
336 2842724963 2842722452 Bacteria 6263924
337 2842908959 2842903701 Bacteria 6986368
338 2842914127 2842909656 Bacteria 6185908
339 2889290918 2889290771 Bacteria 5530962
340 2928080503 2928078545 Bacteria 6534839
341 2928150691 2928147474 Bacteria 6512076
342 2929153460 2929150217 Bacteria 5462483
343 2929180601 2929177148 Bacteria 7883697
344 2929241946 2929239360 Bacteria 7745570
345 2929922741 2929921140 Bacteria 8649150
346 2932083158 2932082852 Bacteria 6563563
347 2945926618 2945924605 Bacteria 4296724
348 2945982999 2945977869 Bacteria 7777518
349 2946017605 2946013367 Bacteria 7766675
350 2954018806 2954016120 Bacteria 6446024
351 2984575690 2984572630 Bacteria 4186940
352 2984609145 2984606641 Bacteria 4186971
353 2993373896 2993372514 Bacteria 4214139
354 8055421822 8055419101 Bacteria 5289643
355 SwRhRL2b_contig_1382251
356 MRS1b_contig_718694
357 JGI24740J21852_10003055
358 JGI24739J22299_10057258
359 JGI24735J21928_10000002
360 JGI25154J39366_1000073
361 rootH1_10055678
362 rootH1_10120336
363 rootH1_10121111
364 rootH2_10025779
365 rootH2_10242480
366 rootH2_10271356
367 rootL2_10156854
368 rootH1_10056865
369 Ga0055542_1005177
370 Ga0055534_1005231
371 Ga0065714_10002207
372 Ga0065714_10004788
373 Ga0065714_10079192
374 Ga0065714_10080514
375 Ga0065704_10000199
376 Ga0065704_10072765
377 Ga0065704_10076744
378 Ga0065704_10078064
379 Ga0065704_10091636
380 Ga0065712_10070401
381 Ga0065712_10155261
382 Ga0065707_10241243
383 Ga0070683_100035062
384 Ga0070670_100241246
385 Ga0070670_100377727
386 Ga0070670_100638293
387 Ga0068869_100002374
388 Ga0068869_100020964
389 Ga0070680_100236206
390 Ga0070682_100001009
391 Ga0068868_100032781
392 Ga0070660_100503076
393 Ga0070689_100003622
394 Ga0070689_100004849
395 Ga0070661_100019528
396 Ga0070669_100078947
397 Ga0070669_100150054
398 Ga0070675_100005674
399 Ga0070675_100200740
400 Ga0070675_100315025
401 Ga0070673_100509647
402 Ga0070688_100002757
403 Ga0070688_100006541
404 Ga0070694_100284459
405 Ga0070663_100024785
406 Ga0070663_100170096
407 Ga0070662_100165781
408 Ga0068867_100542215
409 Ga0070685_10002205
410 Ga0070685_10119281
411 Ga0070679_100323609
412 Ga0070684_100003455
413 Ga0070672_100063428
414 Ga0070686_100359722
415 Ga0068855_100023624
416 Ga0068855_100026816
417 Ga0068855_100307294
418 Ga0068855_100529799
419 Ga0070664_100000670
420 Ga0068857_100087870
421 Ga0068852_100500521
422 Ga0068859_100003995
423 Ga0068859_100015090
424 Ga0068859_100207300
425 Ga0068864_100000994
426 Ga0068861_100067024
427 Ga0068863_100371342
428 Ga0068860_100048525
429 Ga0068860_100066718
430 Ga0068860_100208345
431 Ga0075366_10035350
432 Ga0097621_100523765
433 Ga0068871_100000114
434 Ga0068871_100010739
435 Ga0097620_100003995
436 Ga0097620_100015090
437 Ga0097620_100207317
438 Ga0079104_1000005
439 Ga0105244_10000004
440 Ga0105244_10000343
441 Ga0105240_10427675
442 Ga0111539_10161988
443 Ga0111539_10515613
444 Ga0114129_10004913
445 Ga0105243_10008205
446 Ga0105243_10033659
447 Ga0105242_10132614
448 Ga0105242_10418922
449 Ga0105237_10002370
450 Ga0105237_10010276
451 Ga0105237_10828559
452 Ga0105239_10051806
453 Ga0105239_10095125
454 Ga0157373_10000009
455 Ga0157373_10000502
456 Ga0157373_10016534
457 Ga0157371_10000258
458 Ga0157371_10001004
459 Ga0157371_10009402
460 Ga0157371_10018590
461 Ga0157371_10023559
462 Ga0157370_10006550
463 Ga0157370_10008916
464 Ga0157370_10013235
465 Ga0157370_10024013
466 Ga0157370_10043720
467 Ga0157370_10049875
468 Ga0157370_10133516
469 Ga0157370_10179571
470 Ga0157370_10247748
471 Ga0157370_10287540
472 Ga0157369_10000219
473 Ga0157369_10000961
474 Ga0157369_10045419
475 Ga0157374_10000966
476 Ga0157374_10535793
477 Ga0157378_10035499
478 Ga0157378_10106348
479 Ga0163162_10000404
480 Ga0163162_10007933
481 Ga0163162_10127625
482 Ga0163162_10269337
483 Ga0163162_10319827
484 Ga0163162_10399354
485 Ga0157372_10000070
486 Ga0157372_10002858
487 Ga0157372_10046495
488 Ga0157372_10053231
489 Ga0157375_10001677
490 Ga0157375_10069636
491 Ga0157375_10118571
492 Ga0157375_10248895
493 Ga0163163_10000836
494 Ga0163163_10457904
495 Ga0157380_10012083
496 Ga0157380_10016196
497 Ga0157380_10029430
498 Ga0157380_10067313
499 Ga0157380_10102350
500 Ga0157380_10367489
501 Ga0182008_10000028
502 Ga0182008_10002301
503 Ga0157377_10003455
504 Ga0157377_10008980
505 Ga0157379_10020089
506 Ga0157379_10046005
507 Ga0157379_10259387
508 Ga0157376_10006720
509 Ga0157376_10015031
510 Ga0157376_10268403
511 Ga0182006_1000110
512 Ga0182006_1017819
513 Ga0163161_10000012
514 Ga0163161_10000422
515 Ga0163161_10028035
516 Ga0209258_100193
517 Ga0209646_1000158
518 Ga0209646_1006712
519 Ga0209026_1000168
520 Ga0209148_1000167
521 Ga0209675_1000035
522 Ga0209675_1000263
523 Ga0207655_1000008
524 Ga0207655_1001003
525 Ga0207680_10131273
526 Ga0207647_10033221
527 Ga0207647_10116602
528 Ga0207645_10131948
529 Ga0207671_10001876
530 Ga0207671_10011873
531 Ga0207649_10137567
532 Ga0207681_10024385
533 Ga0207681_10071357
534 Ga0207650_10082178
535 Ga0207650_10380296
536 Ga0207650_10448357
537 Ga0207650_10565669
538 Ga0207659_10073381
539 Ga0207659_10397659
540 Ga0207659_10495288
541 Ga0207659_10533393
542 Ga0207706_10403616
543 Ga0207686_10296097
544 Ga0207709_10440865
545 Ga0207670_10002197
546 Ga0207670_10007771
547 Ga0207691_10057703
548 Ga0207691_10101926
549 Ga0207691_10131307
550 Ga0207691_10268765
551 Ga0207689_10009986
552 Ga0207689_10036473
553 Ga0207689_10116552
554 Ga0207689_10209002
555 Ga0207661_10011964
556 Ga0207679_10019149
557 Ga0207667_10049953
558 Ga0207667_10063651
559 Ga0207667_10097048
560 Ga0207667_10415008
561 Ga0207651_10016385
562 Ga0207651_10181093
563 Ga0207651_10522954
564 Ga0207712_10269551
565 Ga0207712_10625546
566 Ga0207668_10042528
567 Ga0207677_10123550
568 Ga0207678_10039209
569 Ga0207678_10099161
570 Ga0207641_10230444
571 Ga0207648_10255003
572 Ga0207674_10003111
573 Ga0207674_10026709
574 Ga0207674_10118498
575 Ga0207675_100026005
576 Ga0209281_1000216
577 Ga0268264_10133729
578 Ga0268264_10269963
579 Ga0268264_10471938
580 Ga0307515_10278342
581 Ga0316176_1118316
582 Ga0316183_1208293
583 Ga0307408_100001263
584 Ga0307408_100002471
585 Ga0307405_10000003
586 Ga0307410_10000266
587 Ga0307407_10000008
588 Ga0307412_10000017
589 Ga0307412_10000572
590 Ga0307416_100000009
591 Ga0307414_10000279
592 Ga0307414_10007215
593 Ga0307414_10029104
594 Ga0307414_10029391
595 Ga0307414_10037133
596 Ga0307414_10280182
597 Ga0307411_10069342
598 Ga0307510_10010767
599 Ga0395899_0000087
600 Ga0395899_0004577
601 Ga0395900_0060225
602 Ga0395900_0288966
603 Ga0395900_0611664
604 Ga0395898_0007001
605 Ga0395905_0006896
606 Ga0395905_0178786
607 Ga0395901_0001623
608 Ga0439431_0007604
609 Ga0439442_013190
610 Ga0439449_0004326
611 Ga0439449_0037779
612 Ga0439434_0008140
613 Ga0466969_0000179
614 Ga0466969_0034855
615 Ga0466969_0142309
616 Ga0466966_0000014
617 Ga0466966_0053484
618 Ga0466961_0048149
619 Ga0466961_0161662
620 Ga0466970_0240524
621 Ga0466959_0000011
622 Ga0466959_0004493
623 Ga0466959_0009748
624 Ga0466958_0087973
625 Ga0495627_000003
626 Ga0495585_0001034
627 Ga0495594_0144014
628 Ga0495596_0002153
629 Ga0495606_0004913
630 Ga0495606_0013207
631 Ga0495632_0004127
632 Ga0495643_0002808
633 Ga0495663_0000039
634 Ga0495654_0000001
635 Ga0495633_0000562
636 Ga0495625_0001175
637 Ga0495625_0006572
638 Ga0495589_0029838
639 Ga0495660_0029825
640 Ga0495686_0002441
641 Ga0496110_0222871
642 Ga0496116_0011970
643 Ga0496117_0004077
644 Ga0496118_0027056
645 Ga0496121_0000008
646 Ga0496122_0001730
647 Ga0496122_0006098
648 Ga0496123_0009476
649 Ga0496123_0075918
650 Ga0496125_0000181
651 Ga0496126_0001001
652 Ga0496126_0043146
653 Ga0501223_001389
654 Ga0501249_000054
655 Ga0501219_000601
656 Ga0501225_0000755
657 Ga0501241_000006
658 Ga0501241_002108
659 Ga0501280_000492
660 nmdc:mga0k408_51166_c1
661 nmdc:mga05p37_7598_c1
662 nmdc:mga08y16_361846_c1
663 Ga0500578_0001655
664 Ga0500646_0010855
665 Ga0500651_0000148
666 Ga0500641_0000732
667 Ga0500594_0014423
668 Ga0500608_000292
669 Ga0500588_0056546
670 Ga0500616_0096615
671 Ga0500622_0000127
672 Ga0500584_019937
673 Ga0500661_007643
674 Ga0466962_0007942
675 2588207941
676 2513235159
677 2585425565
678 2588209723
679 2588234082
680 2599478445
681 2722727869
682 2738732265
683 2738764830
684 2739213845
685 2739301361
686 2753671098
687 2816873274
688 2816873839
689 2819577589
690 2842724963
691 2842908959
692 2842914127
693 2889290918
694 2928080503
695 2928150691
696 2929153460
697 2929180601
698 2929241946
699 2929922741
700 2932083158
701 2945926618
702 2945982999
703 2946017605
704 2954018806
705 2984575690
706 2984609145
707 2993373896
708 8055421822

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF12833

HTH_18

Helix-turn-helix domain

217

296

0.97

Structural Annotation

Top 5 Hits

ID Description Score Start End
1bl0-assembly1.cif.gz_A multiple antibiotic resistance protein (mara)/dna complex 0.8754 181 290
3lsg-assembly2.cif.gz_D the crystal structure of the c-terminal domain of the two-component response regulator yesn from fusobacterium nucleatum subsp. nucleatum atcc 25586 0.852 180 279
3lsg-assembly1.cif.gz_A the crystal structure of the c-terminal domain of the two-component response regulator yesn from fusobacterium nucleatum subsp. nucleatum atcc 25586 0.8431 180 289
3lsg-assembly3.cif.gz_E the crystal structure of the c-terminal domain of the two-component response regulator yesn from fusobacterium nucleatum subsp. nucleatum atcc 25586 0.8377 180 283
3lsg-assembly1.cif.gz_A the crystal structure of the c-terminal domain of the two-component response regulator yesn from fusobacterium nucleatum subsp. nucleatum atcc 25586 0.8358 180 289
ID Description Score Start End Superfamily
1d5yD02 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Homeodomain-like 0.946 241 284 1.10.10.60
af_P32677_219_275_1.10.10.60 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Homeodomain-like 0.9054 240 284 1.10.10.60
3lsgA02 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Homeodomain-like 0.899 246 289 1.10.10.60
3lsgB02 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Homeodomain-like 0.8935 245 289 1.10.10.60
3lsgC02 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Homeodomain-like 0.8701 246 289 1.10.10.60
ID Description Score Start End GO Terms
AF-A0A5R8MH57-F1-model_v4 Helix-turn-helix transcriptional regulator 0.9016 182 284 GO:0003700
GO:0043565
AF-A0A699M4B6-F1-model_v4 deleted 0.893 21 168
AF-A0A0J1NBP3-F1-model_v4 Multiple antibiotic resistance protein MarA 0.8827 174 284 GO:0003700
GO:0043565
GO:0046677
AF-A0A061PBG8-F1-model_v4 Transcriptional regulator, AraC family 0.8786 182 284 GO:0003700
GO:0043565
AF-A0A839BL91-F1-model_v4 deleted 0.8752 179 284

Map