F424145

General Info

Members Datasets Scaffolds Average Seq Length
366 218 728 1002

Family's Representative Sequence

Representative Sequence 3300049569|Ga0501032_0010481|Ga0501032_0010481_3151_6597
Length 1101
Sequence MFLIAHSWFSFKYGILSPQALLEEAAEVGVRTLALTDIHNTAGIPDFVRLAGDHGIRPVAGIEFRPLRPSSGRQILYIGLAKNNNGFQQLNELLSPHLLDDEALPEEPPELADAFFILPFSTPPRTLHPNERIGIKPSELTRLPFSPWAKRLKDLVALLPATFRGKQDFNTHRLLRTMAKNTLISLLPAEELADPDDRFRSEEEVRRIYRDFPQLLCNTEHLLEQCSIVFDGSDKTRKVFGTSLALDRERLHRDTLDGLHRRYPQATDKVVARMQHELDVIERMGFISYFLINQDIVRHARSRGFFHVGRGSGANSLVAYCLGITDVDPIELNLYFERFISTARKKPPDFDIDFSWKDRDEVYRYVFAKYNAPPDPSRASGSGGATGIHAAQVATYTTFQWRGAVRELGKAVGLPPEEIDALSEGRSRYGGGRPSAQANSGGLDKVAQAVVRYANRLIGMPHQFGIHVGGIVITDKPVTHYGALFRPPKGFPVVQLSLLECEDLGLHKFDILSQRGLGHIRDAVELVRGRQLSVVSCPGTPNNEQRSDIHNIPAFKQDPAIKELLRTGDTVGCFYVESPAMRMLLKKLRVEDYLTLVAASSIIRPGVAESGMMREYILRHNDPERVKRAPRELLEIMPETYGVMVYQEDVLKVAHLYAGLDLEEADLLRRGMTARFRERPEFKAVQEKFFANCKAMGRPPGQAEEVWRQIESFASFSFAKGHSASYAVESYQSLWLKAHHPLEFMVAVANNFGGFYSLEFYLHEARRHGAVIEAPCVNVSGELCLLVRGKGCQLSVASCRGTPGQRLTTENRQLTSNNHEPRAIPRIYLGLANIKSLTAETVQLILHERRRHGLFHDLEDLLHRVPLPLEQARILVRTGALRFTGKSKPQLLWDLTLLHKPASITADGDLFITKVEEPVLPALYHYPLADAYDELELLGFPLGDPFSLVEGEELTRRREDAKDEGLPPRHQARQEMPHAKDVDSCRLSVVRAASDNLPKTILKHDMPRHIGKRVTMLGYMVHVKPASTRTGEWMSFGSFIDTAGELWDSTQFPAVAARYPFRGRGVYRLTGVVEEEFGHCSLRTQALEKLPWRADPRYGAT

Samples

Sample ID Description Type Environment
1 3300049569 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_02 Metagenome Rhizosphere
2 2162886007 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 v1 Metagenome Rhizosphere
3 3300002737 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mTSA Metagenome Endosphere
4 3300003316 Sugarcane root Sample L1 Metagenome Unclassified
5 3300003320 Sugarcane root Sample H2 Metagenome Unclassified
6 3300003322 Sugarcane root Sample L2 Metagenome Unclassified
7 3300003323 Sugarcane root Sample H1 Metagenome Unclassified
8 3300005262 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMF (version 2) (version 3) Metagenome Endosphere
9 3300005288 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Rhizosphere Soil Replicate 2: eDNA_1 v2 (version 2) Metagenome Rhizosphere
10 3300005289 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 v2 (version 2) Metagenome Rhizosphere
11 3300005290 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Rhizosphere Soil Replicate 1: eDNA_1 v3 (version 3) Metagenome Rhizosphere
12 3300005329 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG Metagenome Rhizosphere
13 3300005335 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG Metagenome Rhizosphere
14 3300005337 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3L metaG Metagenome Rhizosphere
15 3300005339 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG Metagenome Rhizosphere
16 3300005344 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG Metagenome Rhizosphere
17 3300005353 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG Metagenome Rhizosphere
18 3300005456 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG Metagenome Rhizosphere
19 3300005530 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG Metagenome Rhizosphere
20 3300005535 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG Metagenome Rhizosphere
21 3300005543 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG Metagenome Rhizosphere
22 3300005547 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-3 metaG Metagenome Rhizosphere
23 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
24 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
25 3300005578 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 Metagenome Rhizosphere
26 3300005616 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 Metagenome Rhizosphere
27 3300005617 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 Metagenome Rhizosphere
28 3300005834 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C1-2 Metagenome Rhizosphere
29 3300005841 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 Metagenome Rhizosphere
30 3300005842 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 Metagenome Rhizosphere
31 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
32 3300006931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 (version 2) (version 2) Metagenome Rhizosphere
33 3300006942 Root nodule microbial communities of legume samples collected from California, USA - Siratro white BW Metagenome Nodule
34 3300006946 Root nodule microbial communities of legume samples collected from California, USA - Medicago truncatula BG Metagenome Nodule
35 3300006948 Root nodule microbial communities of legume samples collected from California, USA - M. trunc garden sep15 Metagenome Nodule
36 3300009036 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-4 metaG Metagenome Rhizosphere
37 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
38 3300009148 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG Metagenome Rhizosphere
39 3300009174 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG Metagenome Rhizosphere
40 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
41 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
42 3300009553 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG Metagenome Rhizosphere
43 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
44 3300011119 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG Metagenome Rhizosphere
45 3300013100 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6-5 metaG Metagenome Rhizosphere
46 3300013102 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG Metagenome Rhizosphere
47 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
48 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
49 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
50 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
51 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
52 3300014497 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-129_1 metaG Metagenome Rhizosphere
53 3300015261 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-104_1 MetaG Metagenome Rhizosphere
54 3300015265 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-103_1 MetaG Metagenome Rhizosphere
55 3300017792 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG Metagenome Rhizosphere
56 3300025233 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mTSA (SPAdes) (version 2) Metagenome Endosphere
57 3300025291 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mLB_r2 (SPAdes) (version 3) Metagenome Endosphere
58 3300025295 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMF_r2 (SPAdes) (version 3) Metagenome Endosphere
59 3300025297 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF (SPAdes) (version 2) Metagenome Endosphere
60 3300025321 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C1-2 (SPAdes) (version 2) Metagenome Rhizosphere
61 3300025728 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
62 3300025903 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
63 3300025904 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2 (SPAdes) (version 2) Metagenome Rhizosphere
64 3300025907 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
65 3300025911 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
66 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
67 3300025914 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
68 3300025921 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
69 3300025935 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
70 3300025942 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes) (version 2) Metagenome Rhizosphere
71 3300025944 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
72 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
73 3300025981 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 (SPAdes) (version 2) Metagenome Rhizosphere
74 3300026035 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes) (version 2) Metagenome Rhizosphere
75 3300026088 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes) (version 2) Metagenome Rhizosphere
76 3300026089 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes) (version 2) Metagenome Rhizosphere
77 3300026095 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes) (version 2) Metagenome Rhizosphere
78 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
79 3300026121 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
80 3300027111 Root nodule microbial communities of legume samples collected from California, USA - Medicago truncatula BG (SPAdes) (version 2) Metagenome Nodule
81 3300027361 Root nodule microbial communities of legume samples collected from California, USA - Siratro white BW (SPAdes) (version 2) Metagenome Nodule
82 3300027666 Root nodule microbial communities of legume samples collected from California, USA - M. trunc garden sep15 (SPAdes) (version 2) Metagenome Nodule
83 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
84 3300028381 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) Metagenome Rhizosphere
85 3300028653 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-12-25 metaG Metagenome Rhizosphere
86 3300031344 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-5-22 metaG Metagenome Rhizosphere
87 3300031548 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3 Metagenome Rhizosphere
88 3300031730 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 19_EM Metagenome Unclassified
89 3300031731 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-1 Metagenome Rhizosphere
90 3300031824 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-2 Metagenome Rhizosphere
91 3300031852 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-3 Metagenome Rhizosphere
92 3300031901 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2 Metagenome Rhizosphere
93 3300031911 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1 Metagenome Rhizosphere
94 3300032004 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3 Metagenome Rhizosphere
95 3300032005 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-1 Metagenome Rhizosphere
96 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
97 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
98 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
99 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
100 3300041407 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0216DE14Z080117_5416 Metagenome Rhizosphere
101 3300044656 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA1R Metagenome Rhizosphere
102 3300044658 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC1R Metagenome Rhizosphere
103 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
104 3300045049 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC3R Metagenome Rhizosphere
105 3300046453 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co3_8_57 rhizosphere Metagenome Rhizosphere
106 3300046507 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co2_62_14 rhizosphere Metagenome Rhizosphere
107 3300046519 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co2_51_16 rhizosphere Metagenome Rhizosphere
108 3300046522 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 rhizosphere Metagenome Rhizosphere
109 3300046524 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co1_12_9 rhizosphere Metagenome Rhizosphere
110 3300046525 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co1_23_6 rhizosphere Metagenome Rhizosphere
111 3300046530 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-866-Co1_10_5 rhizosphere Metagenome Rhizosphere
112 3300046538 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co1_12_7 rhizosphere Metagenome Rhizosphere
113 3300046558 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co3_6_53 rhizosphere Metagenome Rhizosphere
114 3300046616 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co1_14_4 rhizosphere Metagenome Rhizosphere
115 3300046648 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co3_15_40 rhizosphere Metagenome Rhizosphere
116 3300046660 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co1_32_7 rhizosphere Metagenome Rhizosphere
117 3300047443 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co3_24_32 rhizosphere Metagenome Rhizosphere
118 3300047472 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co2_54_22 rhizosphere Metagenome Rhizosphere
119 3300048919 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_7x unlabeled Metagenome Unclassified
120 3300048920 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1e N15 Metagenome Unclassified
121 3300048921 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1f N15 Metagenome Unclassified
122 3300048922 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2e N15 Metagenome Unclassified
123 3300048924 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_3e N15 Metagenome Unclassified
124 3300048925 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8x unlabeled Metagenome Unclassified
125 3300048927 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_4e N15 Metagenome Unclassified
126 3300048928 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_5e N15 Metagenome Unclassified
127 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
128 3300049568 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_01 Metagenome Rhizosphere
129 3300049570 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_03 Metagenome Rhizosphere
130 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
131 3300049573 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_01 Metagenome Rhizosphere
132 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
133 3300049575 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_03 Metagenome Rhizosphere
134 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
135 3300049671 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - H12_A_3_drought Metagenome Rhizosphere
136 3300049679 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - G11_B_3_drought Metagenome Rhizosphere
137 3300049703 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - J2_A_2_control Metagenome Rhizosphere
138 3300049705 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - C1_A_2_drought Metagenome Rhizosphere
139 3300049763 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - C11_A_4_control Metagenome Rhizosphere
140 3300049766 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - E14_B_4_drought Metagenome Rhizosphere
141 3300049776 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - H24_A_5_drought Metagenome Rhizosphere
142 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
143 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
144 3300049824 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_03 Metagenome Rhizosphere
145 3300050005 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - E22_A_7_drought Metagenome Rhizosphere
146 3300053086 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co2_62_14 endosphere Metagenome Endosphere
147 3300053090 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co3_31_39 endosphere Metagenome Endosphere
148 3300053092 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co3_15_40 endosphere Metagenome Endosphere
149 3300053096 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co1_14_4 endosphere Metagenome Endosphere
150 3300053153 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 endosphere Metagenome Endosphere
151 3300053156 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 endosphere Metagenome Endosphere
152 3300054114 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_03 Metagenome Rhizosphere
153 2519899754 Flavobacterium sp. F52 Isolate Rhizosphere
154 2522125168 Dyadobacter beijingensis DSM 21582 Isolate Rhizosphere
155 2523533629 Kaistella palustris DSM 21579 Isolate Rhizosphere
156 2582581278 Chryseobacterium sp. CF365 Isolate Rhizosphere
157 2585428060 Chryseobacterium sp. OV715 Isolate Rhizosphere
158 2585428095 Chryseobacterium sp. YR005 Isolate Rhizosphere
159 2585428115 Chryseobacterium sp. YR561 Isolate Rhizosphere
160 2585428182 Chryseobacterium sp. YR477 Isolate Rhizosphere
161 2585428183 Chryseobacterium sp. YR485 Isolate Rhizosphere
162 2585428185 Chryseobacterium sp. YR459 Isolate Rhizosphere
163 2588253712 Chryseobacterium sp. OV279 Isolate Rhizosphere
164 2588254255 Chryseobacterium sp. YR221 Isolate Rhizosphere
165 2588254257 Chryseobacterium sp. YR203 Isolate Rhizosphere
166 2643221667 Flavobacterium sp. Root420 Isolate Unclassified
167 2643221716 Flavobacterium sp. Root901 Isolate Unclassified
168 2643221725 Flavobacterium sp. Root935 Isolate Unclassified
169 2721755487 Sphingobacterium sp. B29 Isolate Rhizosphere
170 2728369107 Chryseobacterium kwangjuense KJ1R5 Isolate Unclassified
171 2738541278 Niastella sp. CF465 Isolate Unclassified
172 2738541279 Flavobacterium sp. GV069 Isolate Unclassified
173 2738541285 Flavobacterium sp. GV030 Isolate Unclassified
174 2738543007 Flavobacterium sp. GV063 Isolate Unclassified
175 2739367857 Flavobacterium sp. GV029 Isolate Unclassified
176 2739367858 Flavobacterium sp. GV028 Isolate Unclassified
177 2739367874 Chryseobacterium sp. T16E-39 Isolate Unclassified
178 2751185877 Chryseobacterium artocarpi UTM-3 Isolate Rhizosphere
179 2765235839 Chryseobacterium indologenes AA5 Isolate Unclassified
180 2802428842 Flavobacterium sp. S87F.05.LMB.W.Kidney.N Isolate Unclassified
181 2816332188 Chryseobacterium aquifrigidense 110 (version 2) Isolate Unclassified
182 2816332280 Flavobacterium johnsoniae GSE09 Isolate Unclassified
183 2818991442 Chitinophaga pinensis 1204 Isolate Unclassified
184 2821136567 Chitinophaga sancti 1232 Isolate Unclassified
185 2833640130 Mariniflexile sp. TRM1-10 Isolate Rhizosphere
186 2842083920 Chryseobacterium lathyri KCTC 22544 Isolate Rhizosphere
187 2857613821 Flavobacterium sp. R-72247 Isolate Unclassified
188 2857618242 Flavobacterium sp. R-74482 Isolate Unclassified
189 2871720351 Chryseobacterium sp. KLBC 52 Isolate Nodule
190 2881359912 Flavobacterium ustbae T13 Isolate Rhizosphere
191 2881955468 Edaphocola flava HME-24 Isolate Rhizosphere
192 2889290771 Chryseobacterium sp. PvR013 Isolate Rhizosphere
193 2896317667 Sphingobacterium sp. SGR-19 Isolate Rhizosphere
194 2903895155 Flavobacterium sp. HBTb2-11-1 Isolate Rhizosphere
195 2904419702 Flavobacterium sp. 1355 Isolate Rhizosphere
196 2904467357 Chitinophaga sancti 3198 Isolate Unclassified
197 2904555929 Flavobacterium sp. 1750 Isolate Rhizosphere
198 2904780799 Sphingobacterium sp. 1304 Isolate Rhizosphere
199 2905999023 Chryseobacterium elymi KCTC 22547 Isolate Rhizosphere
200 2919177583 Sphingobacterium sp. 2149 Isolate Rhizosphere
201 2919191525 Flavobacterium sp. 2755 Isolate Rhizosphere
202 2919399522 Chryseobacterium sp. 2987 Isolate Unclassified
203 2919683626 Flavobacterium piscis 4129 Isolate Unclassified
204 2919692658 Algoriphagus sp. 4150 Isolate Rhizosphere
205 2929150217 Flavobacterium sp. R-74510 Hybrid assembly Isolate Unclassified
206 2929239360 Chitinophaga sp. R-73072 Hybrid assembly Isolate Unclassified
207 2945924605 Chryseobacterium ginsenosidimutans W1I9 Isolate Rhizosphere
208 2946019816 Chryseobacterium sp. W4I1 Isolate Rhizosphere
209 2958458903 Flavobacterium anhuiense RCM74 Isolate Rhizosphere
210 2958512119 Flavobacterium sp. Sd200 Isolate Rhizosphere
211 2977243572 Chryseobacterium sp. SORGH_AS 447 Isolate Unclassified
212 2977268062 Flavobacterium sp. SORGH_AS 622 Isolate Unclassified
213 2984572630 Chryseobacterium sp. SORGH_AS909 Isolate Aerial Root
214 2984606641 Chryseobacterium sp. SORGH_AS1175 Isolate Aerial Root
215 2993372514 Chryseobacterium sp. SLBN-27 Isolate Rhizosphere
216 8036736890 Flavobacterium dauae TCH3-2 Isolate Rhizosphere
217 8055592153 Flavobacterium panacis DCY106 Isolate Rhizosphere
218 8056440228 Flavobacterium hibisci THG-HG1.4 Isolate Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 74.32
Metatranscriptomes 0
Isolates 25.68

Biome Distribution

Category Percentage (%)
Aerial Root 0.55
Bulb 0
Endosphere 4.37
Nodule 3.28
Rhizoplane 0
Rhizosphere 72.95
Stem 0
Stem Tuber 0
Unclassified 0.27

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0501032_0010481 3300049569 Bacteria 6684
2 SwRhRL2b_contig_2732696 2162886007 Bacteria 84561
3 JGI25162J39368_1000005 3300002737 Bacteria 435925
4 rootH1_10021603 3300003316 Bacteria 11809
5 rootH2_10001223 3300003320 Bacteria 131149
6 rootH2_10009245 3300003320 Bacteria 27016
7 rootL2_10080212 3300003322 Bacteria 9510
8 rootH1_10118542 3300003323 Bacteria 8417
9 rootH1_10146560 3300003323 Bacteria 5109
10 rootH1_10166389 3300003323 Bacteria 18109
11 Ga0065165_1000037 3300005262 Bacteria 212166
12 Ga0065714_10008784 3300005288 Bacteria 6680
13 Ga0065714_10064709 3300005288 Bacteria 22067
14 Ga0065714_10067385 3300005288 Bacteria 5572
15 Ga0065704_10000205 3300005289 Bacteria 128899
16 Ga0065704_10000221 3300005289 Bacteria 134976
17 Ga0065704_10070692 3300005289 Bacteria 17613
18 Ga0065712_10069588 3300005290 Bacteria 7005
19 Ga0070683_100005488 3300005329 Bacteria 10594
20 Ga0070666_10000040 3300005335 Bacteria 114115
21 Ga0070682_100000231 3300005337 Bacteria 40458
22 Ga0070682_100000493 3300005337 Bacteria 24795
23 Ga0070660_100004792 3300005339 Bacteria 9356
24 Ga0070660_100026841 3300005339 Bacteria 4291
25 Ga0070661_100012795 3300005344 Bacteria 5876
26 Ga0070669_100012134 3300005353 Bacteria 6115
27 Ga0070678_100011123 3300005456 Bacteria 5536
28 Ga0070679_100000366 3300005530 Bacteria 38459
29 Ga0070684_100011572 3300005535 Bacteria 7031
30 Ga0070672_100008120 3300005543 Bacteria 7173
31 Ga0070693_100005293 3300005547 Bacteria 6184
32 Ga0070665_100000094 3300005548 Bacteria 171072
33 Ga0068855_100041837 3300005563 Bacteria 5430
34 Ga0068855_100045371 3300005563 Bacteria 5199
35 Ga0068854_100023877 3300005578 Bacteria 4180
36 Ga0068852_100010522 3300005616 Bacteria 6918
37 Ga0068859_100000436 3300005617 Bacteria 41890
38 Ga0068859_100007737 3300005617 Bacteria 10909
39 Ga0068851_10000034 3300005834 Bacteria 107262
40 Ga0068863_100000330 3300005841 Bacteria 48073
41 Ga0068858_100000316 3300005842 Bacteria 51458
42 Ga0068860_100000052 3300005843 Bacteria 207351
43 Ga0068860_100006079 3300005843 Bacteria 12149
44 Ga0068860_100022615 3300005843 Bacteria 6079
45 Ga0097620_100000436 3300006931 Bacteria 41890
46 Ga0097620_100007737 3300006931 Bacteria 10909
47 Ga0099824_1000172 3300006942 Bacteria 59875
48 Ga0099824_1003521 3300006942 Bacteria 22863
49 Ga0079104_1000005 3300006946 Bacteria 407099
50 Ga0079104_1000023 3300006946 Bacteria 219954
51 Ga0079104_1000154 3300006946 Bacteria 97194
52 Ga0099826_10014353 3300006948 Bacteria 5981
53 Ga0105244_10000035 3300009036 Bacteria 168428
54 Ga0105244_10001529 3300009036 Bacteria 18465
55 Ga0105240_10000731 3300009093 Bacteria 60044
56 Ga0105240_10001035 3300009093 Bacteria 49456
57 Ga0105240_10005676 3300009093 Bacteria 18525
58 Ga0105243_10000004 3300009148 Bacteria 601266
59 Ga0105243_10000104 3300009148 Bacteria 96700
60 Ga0105241_10000562 3300009174 Bacteria 28062
61 Ga0105241_10001692 3300009174 Bacteria 16760
62 Ga0105241_10005166 3300009174 Bacteria 9631
63 Ga0105237_10001041 3300009545 Bacteria 37233
64 Ga0105237_10002222 3300009545 Bacteria 24283
65 Ga0105237_10009995 3300009545 Bacteria 10124
66 Ga0105237_10019830 3300009545 Bacteria 6942
67 Ga0105238_10014520 3300009551 Bacteria 7964
68 Ga0105249_10012105 3300009553 Bacteria 7593
69 Ga0105239_10002653 3300010375 Bacteria 22567
70 Ga0105239_10003540 3300010375 Bacteria 19098
71 Ga0105239_10004337 3300010375 Bacteria 16995
72 Ga0105246_10000147 3300011119 Bacteria 33197
73 Ga0157373_10000002 3300013100 Bacteria 750094
74 Ga0157373_10000008 3300013100 Bacteria 216306
75 Ga0157373_10000154 3300013100 Bacteria 55480
76 Ga0157373_10002052 3300013100 Bacteria 15260
77 Ga0157371_10000081 3300013102 Bacteria 151138
78 Ga0157371_10000255 3300013102 Bacteria 74280
79 Ga0157371_10000433 3300013102 Bacteria 51401
80 Ga0157371_10001655 3300013102 Bacteria 22727
81 Ga0157371_10021614 3300013102 Bacteria 4722
82 Ga0157371_10039291 3300013102 Bacteria 3383
83 Ga0157370_10000068 3300013104 Bacteria 113329
84 Ga0157370_10000153 3300013104 Bacteria 84822
85 Ga0157370_10000191 3300013104 Bacteria 76405
86 Ga0157370_10000375 3300013104 Bacteria 56144
87 Ga0157370_10001449 3300013104 Bacteria 29363
88 Ga0157370_10001543 3300013104 Bacteria 28500
89 Ga0157370_10002528 3300013104 Bacteria 21985
90 Ga0157370_10004295 3300013104 Bacteria 16400
91 Ga0157370_10006472 3300013104 Bacteria 12914
92 Ga0157370_10008252 3300013104 Bacteria 11242
93 Ga0157370_10009911 3300013104 Bacteria 10094
94 Ga0157369_10000575 3300013105 Bacteria 48226
95 Ga0157369_10002137 3300013105 Bacteria 23838
96 Ga0157369_10003252 3300013105 Bacteria 19344
97 Ga0163162_10003197 3300013306 Bacteria 15670
98 Ga0163162_10046097 3300013306 Bacteria 4370
99 Ga0157372_10052462 3300013307 Bacteria 4541
100 Ga0157375_10000460 3300013308 Bacteria 37011
101 Ga0182008_10000005 3300014497 Bacteria 386556
102 Ga0182008_10001074 3300014497 Bacteria 18868
103 Ga0182008_10003182 3300014497 Bacteria 10040
104 Ga0182006_1000100 3300015261 Bacteria 97114
105 Ga0182006_1000195 3300015261 Bacteria 62545
106 Ga0182006_1000668 3300015261 Bacteria 24095
107 Ga0182006_1005192 3300015261 Bacteria 6244
108 Ga0182005_1001603 3300015265 Bacteria 8864
109 Ga0163161_10000009 3300017792 Bacteria 287918
110 Ga0163161_10000543 3300017792 Bacteria 30624
111 Ga0163161_10048251 3300017792 Bacteria 3075
112 Ga0209437_100043 3300025233 Bacteria 440454
113 Ga0209675_1000066 3300025291 Bacteria 171883
114 Ga0209675_1000088 3300025291 Bacteria 147320
115 Ga0209675_1000279 3300025291 Bacteria 48782
116 Ga0209564_1000127 3300025295 Bacteria 196942
117 Ga0209758_1000615 3300025297 Bacteria 55034
118 Ga0207656_10000027 3300025321 Bacteria 86479
119 Ga0207655_1000008 3300025728 Bacteria 734289
120 Ga0207655_1001342 3300025728 Bacteria 23120
121 Ga0207680_10000058 3300025903 Bacteria 50771
122 Ga0207647_10003551 3300025904 Bacteria 11705
123 Ga0207645_10000198 3300025907 Bacteria 49061
124 Ga0207645_10009417 3300025907 Bacteria 6756
125 Ga0207654_10002655 3300025911 Bacteria 9077
126 Ga0207654_10006560 3300025911 Bacteria 5852
127 Ga0207695_10000702 3300025913 Bacteria 65628
128 Ga0207695_10001770 3300025913 Bacteria 34103
129 Ga0207671_10000209 3300025914 Bacteria 88622
130 Ga0207671_10002321 3300025914 Bacteria 20528
131 Ga0207671_10002557 3300025914 Bacteria 19312
132 Ga0207671_10002938 3300025914 Bacteria 17562
133 Ga0207652_10000043 3300025921 Bacteria 128581
134 Ga0207652_10002370 3300025921 Bacteria 15931
135 Ga0207652_10002751 3300025921 Bacteria 14771
136 Ga0207652_10004213 3300025921 Bacteria 11741
137 Ga0207709_10000010 3300025935 Bacteria 601305
138 Ga0207709_10000144 3300025935 Bacteria 98895
139 Ga0207689_10001133 3300025942 Bacteria 25688
140 Ga0207661_10002141 3300025944 Bacteria 13593
141 Ga0207667_10004337 3300025949 Bacteria 17368
142 Ga0207640_10016955 3300025981 Bacteria 4251
143 Ga0207703_10000493 3300026035 Bacteria 40997
144 Ga0207641_10000051 3300026088 Bacteria 174706
145 Ga0207648_10004185 3300026089 Bacteria 14911
146 Ga0207676_10033844 3300026095 Unclassified 3865
147 Ga0207674_10017449 3300026116 Bacteria 7832
148 Ga0207683_10003678 3300026121 Bacteria 13323
149 Ga0209281_1000037 3300027111 Bacteria 368555
150 Ga0209281_1000094 3300027111 Bacteria 238155
151 Ga0209281_1000158 3300027111 Bacteria 162280
152 Ga0209489_106209 3300027361 Bacteria 19526
153 Ga0209282_1010175 3300027666 Bacteria 5949
154 Ga0268266_10000057 3300028379 Bacteria 284777
155 Ga0268264_10000143 3300028381 Bacteria 170031
156 Ga0268264_10017375 3300028381 Bacteria 5892
157 Ga0265323_10000635 3300028653 Bacteria 19202
158 Ga0265316_10004615 3300031344 Bacteria 13664
159 Ga0265316_10005999 3300031344 Bacteria 11687
160 Ga0307408_100000130 3300031548 Bacteria 83482
161 Ga0307516_10001788 3300031730 Bacteria 29542
162 Ga0307405_10000021 3300031731 Bacteria 155876
163 Ga0307413_10000228 3300031824 Bacteria 16574
164 Ga0307410_10000216 3300031852 Bacteria 21781
165 Ga0307406_10000039 3300031901 Bacteria 76207
166 Ga0307412_10000090 3300031911 Bacteria 81466
167 Ga0307414_10000001 3300032004 Bacteria 1352954
168 Ga0307414_10000002 3300032004 Bacteria 623006
169 Ga0307414_10000104 3300032004 Bacteria 60113
170 Ga0307414_10000133 3300032004 Bacteria 51805
171 Ga0307414_10000221 3300032004 Bacteria 37491
172 Ga0307414_10000264 3300032004 Bacteria 32949
173 Ga0307414_10000340 3300032004 Bacteria 26433
174 Ga0307414_10000348 3300032004 Bacteria 25887
175 Ga0307414_10002950 3300032004 Bacteria 8991
176 Ga0307414_10002967 3300032004 Bacteria 8975
177 Ga0307414_10003816 3300032004 Bacteria 8102
178 Ga0307414_10011910 3300032004 Bacteria 5124
179 Ga0307411_10000001 3300032005 Bacteria 931810
180 Ga0307411_10000004 3300032005 Bacteria 460327
181 Ga0307411_10000010 3300032005 Bacteria 238134
182 Ga0395900_0020664 3300037418 Bacteria 6728
183 Ga0395898_0012127 3300037466 Bacteria 8919
184 Ga0395905_0000515 3300037471 Bacteria 52918
185 Ga0395905_0000795 3300037471 Bacteria 41432
186 Ga0395901_0001357 3300038443 Bacteria 25621
187 Ga0395901_0027547 3300038443 Bacteria 5840
188 Ga0439447_002095 3300041407 Bacteria 7323
189 Ga0439447_002140 3300041407 Bacteria 7241
190 Ga0439447_002701 3300041407 Bacteria 6420
191 Ga0466969_0000101 3300044656 Bacteria 45511
192 Ga0466972_0000013 3300044658 Bacteria 229345
193 Ga0466972_0012682 3300044658 Bacteria 4234
194 Ga0453684_0003552 3300044712 Bacteria 34870
195 Ga0466959_0000017 3300045049 Bacteria 143170
196 Ga0495627_000002 3300046453 Bacteria 903861
197 Ga0495606_0031409 3300046507 Bacteria 3693
198 Ga0495632_0008677 3300046519 Bacteria 6207
199 Ga0495643_0021021 3300046522 Bacteria 3751
200 Ga0495648_0025007 3300046524 Bacteria 4052
201 Ga0495663_0001204 3300046525 Bacteria 8329
202 Ga0495654_0000001 3300046530 Bacteria 1513197
203 Ga0495609_0000003 3300046538 Bacteria 711547
204 Ga0495609_0000119 3300046538 Bacteria 88855
205 Ga0495633_0000001 3300046558 Bacteria 801972
206 Ga0495668_0001269 3300046616 Bacteria 25103
207 Ga0495668_0008055 3300046616 Bacteria 6636
208 Ga0495611_0000873 3300046648 Bacteria 16406
209 Ga0495625_0001710 3300046660 Bacteria 25523
210 Ga0495687_000111 3300047443 Bacteria 124789
211 Ga0495686_0000113 3300047472 Bacteria 168307
212 Ga0495686_0000125 3300047472 Bacteria 158834
213 Ga0495686_0007234 3300047472 Bacteria 8355
214 Ga0496116_0000390 3300048919 Bacteria 64244
215 Ga0496116_0002031 3300048919 Bacteria 21716
216 Ga0496116_0010596 3300048919 Bacteria 7708
217 Ga0496117_0000023 3300048920 Bacteria 438585
218 Ga0496117_0000139 3300048920 Bacteria 158612
219 Ga0496117_0005409 3300048920 Bacteria 13432
220 Ga0496118_0006560 3300048921 Bacteria 12724
221 Ga0496119_0000002 3300048922 Bacteria 738385
222 Ga0496119_0000010 3300048922 Bacteria 438534
223 Ga0496121_0000026 3300048924 Bacteria 450157
224 Ga0496121_0023579 3300048924 Bacteria 5919
225 Ga0496121_0043161 3300048924 Bacteria 3910
226 Ga0496122_0000277 3300048925 Bacteria 114200
227 Ga0496122_0000465 3300048925 Bacteria 84396
228 Ga0496122_0000855 3300048925 Bacteria 57341
229 Ga0496122_0001168 3300048925 Bacteria 44890
230 Ga0496122_0013409 3300048925 Bacteria 8025
231 Ga0496124_0008159 3300048927 Bacteria 10991
232 Ga0496124_0044740 3300048927 Bacteria 3797
233 Ga0496125_0000026 3300048928 Bacteria 397380
234 Ga0496125_0000255 3300048928 Bacteria 109838
235 Ga0496125_0000567 3300048928 Bacteria 63543
236 Ga0496125_0000661 3300048928 Bacteria 57455
237 Ga0496126_0001177 3300048929 Bacteria 42992
238 Ga0501031_0002264 3300049568 Bacteria 12194
239 Ga0501032_0005100 3300049569 Bacteria 9800
240 Ga0501033_0000004 3300049570 Bacteria 441310
241 Ga0501034_0000216 3300049571 Bacteria 109908
242 Ga0501037_0007091 3300049573 Bacteria 8190
243 Ga0501038_0011048 3300049574 Bacteria 8245
244 Ga0501039_0006198 3300049575 Bacteria 9078
245 Ga0501047_0038152 3300049581 Bacteria 4647
246 Ga0501238_000041 3300049671 Bacteria 21406
247 Ga0501249_000014 3300049679 Bacteria 137700
248 Ga0501249_000028 3300049679 Bacteria 86906
249 Ga0501249_000070 3300049679 Bacteria 35806
250 Ga0501219_000003 3300049703 Bacteria 39456
251 Ga0501225_0001406 3300049705 Bacteria 7514
252 Ga0501266_000009 3300049763 Bacteria 233584
253 Ga0501266_000011 3300049763 Bacteria 197280
254 Ga0501266_000014 3300049763 Bacteria 181600
255 Ga0501269_000001 3300049766 Bacteria 122581
256 Ga0501280_000178 3300049776 Bacteria 16164
257 Ga0501035_0005370 3300049822 Bacteria 12116
258 Ga0501044_0009996 3300049823 Bacteria 10309
259 Ga0501045_0000076 3300049824 Bacteria 46838
260 Ga0501284_00027 3300050005 Bacteria 76239
261 Ga0501284_00149 3300050005 Bacteria 8219
262 Ga0500578_0000628 3300053086 Bacteria 42830
263 Ga0500646_0000636 3300053090 Bacteria 10075
264 Ga0500583_0000208 3300053092 Bacteria 22348
265 Ga0500641_0000048 3300053096 Bacteria 57304
266 Ga0500641_0000089 3300053096 Bacteria 36180
267 Ga0500616_0001380 3300053153 Bacteria 23509
268 Ga0500616_0005649 3300053153 Bacteria 8439
269 Ga0500622_0002992 3300053156 Bacteria 11713
270 Ga0501084_0000954 3300054114 Bacteria 22390
271 2520878680 2519899754 Bacteria 5336938
272 2520881075 2519899754 Bacteria 5336938
273 2522549995 2522125168 Bacteria 7376607
274 2524006077 2523533629 Bacteria 2982326
275 2585141747 2582581278 Bacteria 5296881
276 2587746484 2585428060 Bacteria 5304711
277 2587865974 2585428095 Bacteria 3789702
278 2587941865 2585428115 Bacteria 4420269
279 2587943496 2585428115 Bacteria 4420269
280 2588209162 2585428182 Bacteria 5007281
281 2588211241 2585428182 Bacteria 5007281
282 2588212694 2585428183 Bacteria 5166119
283 2588222516 2585428185 Bacteria 4969476
284 2588447311 2588253712 Bacteria 5403181
285 2590600620 2588254255 Bacteria 5014294
286 2590612085 2588254257 Bacteria 5436094
287 2590612619 2588254257 Bacteria 5436094
288 2644371979 2643221667 Bacteria 5627472
289 2644372510 2643221667 Bacteria 5627472
290 2644643181 2643221716 Bacteria 4986332
291 2644683916 2643221725 Bacteria 5087956
292 2644685952 2643221725 Bacteria 5087956
293 2722727997 2721755487 Bacteria 6357185
294 2729199343 2728369107 Bacteria 5082720
295 2729200532 2728369107 Bacteria 5082720
296 2738726254 2738541278 Bacteria 9755573
297 2738737089 2738541279 Bacteria 6149495
298 2738769629 2738541285 Bacteria 6150075
299 2739218671 2738543007 Bacteria 6149845
300 2739999403 2739367857 Bacteria 5433684
301 2740004220 2739367858 Bacteria 5432813
302 2740057791 2739367874 Bacteria 4872888
303 2753670884 2751185877 Bacteria 4921427
304 2753672298 2751185877 Bacteria 4921427
305 2753674454 2751185877 Bacteria 4921427
306 2765576601 2765235839 Bacteria 5314748
307 2802652195 2802428842 Bacteria 4926114
308 2802653122 2802428842 Bacteria 4926114
309 2816872508 2816332188 Bacteria 5133218
310 2816873234 2816332188 Bacteria 5133218
311 2816875271 2816332188 Bacteria 5133218
312 2817415052 2816332280 Bacteria 5109718
313 2819575852 2818991442 Bacteria 8318214
314 2821138398 2821136567 Bacteria 8080116
315 2833640789 2833640130 Bacteria 4858325
316 2842087573 2842083920 Bacteria 4857652
317 2842087721 2842083920 Bacteria 4857652
318 2857616777 2857613821 Bacteria 4917088
319 2857618503 2857618242 Bacteria 5635925
320 2857621286 2857618242 Bacteria 5635925
321 2871722615 2871720351 Bacteria 4862476
322 2881359927 2881359912 Bacteria 4935907
323 2881363406 2881359912 Bacteria 4935907
324 2881958519 2881955468 Bacteria 3545609
325 2889291140 2889290771 Bacteria 5530962
326 2889292354 2889290771 Bacteria 5530962
327 2889292956 2889290771 Bacteria 5530962
328 2896318264 2896317667 Bacteria 4606601
329 2903896168 2903895155 Bacteria 5258610
330 2903897013 2903895155 Bacteria 5258610
331 2904421360 2904419702 Bacteria 5166287
332 2904469194 2904467357 Bacteria 8057758
333 2904555971 2904555929 Bacteria 5218588
334 2904559953 2904555929 Bacteria 5218588
335 2904781429 2904780799 Bacteria 5840761
336 2904784907 2904780799 Bacteria 5840761
337 2904785267 2904780799 Bacteria 5840761
338 2906000348 2905999023 Bacteria 4591259
339 2919177847 2919177583 Bacteria 5641607
340 2919177886 2919177583 Bacteria 5641607
341 2919196148 2919191525 Bacteria 5765973
342 2919399886 2919399522 Bacteria 5164947
343 2919684407 2919683626 Bacteria 5534354
344 2919697133 2919692658 Bacteria 5943958
345 2929152227 2929150217 Bacteria 5462483
346 2929243670 2929239360 Bacteria 7745570
347 2945926416 2945924605 Bacteria 4296724
348 2946021014 2946019816 Bacteria 4621265
349 2958460076 2958458903 Bacteria 5301041
350 2958461033 2958458903 Bacteria 5301041
351 2958514638 2958512119 Bacteria 4528530
352 2977243755 2977243572 Bacteria 4374394
353 2977244613 2977243572 Bacteria 4374394
354 2977268925 2977268062 Bacteria 5243061
355 2977269063 2977268062 Bacteria 5243061
356 2977270099 2977268062 Bacteria 5243061
357 2977270869 2977268062 Bacteria 5243061
358 2984576533 2984572630 Bacteria 4186940
359 2984609989 2984606641 Bacteria 4186971
360 2993372643 2993372514 Bacteria 4214139
361 8036737406 8036736890 Bacteria 2944828
362 8055593547 8055592153 Bacteria 5961247
363 8055594245 8055592153 Bacteria 5961247
364 8056441590 8056440228 Bacteria 4946504
365 Ga0501032_0010481
366 SwRhRL2b_contig_2732696
367 JGI25162J39368_1000005
368 rootH1_10021603
369 rootH2_10001223
370 rootH2_10009245
371 rootL2_10080212
372 rootH1_10118542
373 rootH1_10146560
374 rootH1_10166389
375 Ga0065165_1000037
376 Ga0065714_10008784
377 Ga0065714_10064709
378 Ga0065714_10067385
379 Ga0065704_10000205
380 Ga0065704_10000221
381 Ga0065704_10070692
382 Ga0065712_10069588
383 Ga0070683_100005488
384 Ga0070666_10000040
385 Ga0070682_100000231
386 Ga0070682_100000493
387 Ga0070660_100004792
388 Ga0070660_100026841
389 Ga0070661_100012795
390 Ga0070669_100012134
391 Ga0070678_100011123
392 Ga0070679_100000366
393 Ga0070684_100011572
394 Ga0070672_100008120
395 Ga0070693_100005293
396 Ga0070665_100000094
397 Ga0068855_100041837
398 Ga0068855_100045371
399 Ga0068854_100023877
400 Ga0068852_100010522
401 Ga0068859_100000436
402 Ga0068859_100007737
403 Ga0068851_10000034
404 Ga0068863_100000330
405 Ga0068858_100000316
406 Ga0068860_100000052
407 Ga0068860_100006079
408 Ga0068860_100022615
409 Ga0097620_100000436
410 Ga0097620_100007737
411 Ga0099824_1000172
412 Ga0099824_1003521
413 Ga0079104_1000005
414 Ga0079104_1000023
415 Ga0079104_1000154
416 Ga0099826_10014353
417 Ga0105244_10000035
418 Ga0105244_10001529
419 Ga0105240_10000731
420 Ga0105240_10001035
421 Ga0105240_10005676
422 Ga0105243_10000004
423 Ga0105243_10000104
424 Ga0105241_10000562
425 Ga0105241_10001692
426 Ga0105241_10005166
427 Ga0105237_10001041
428 Ga0105237_10002222
429 Ga0105237_10009995
430 Ga0105237_10019830
431 Ga0105238_10014520
432 Ga0105249_10012105
433 Ga0105239_10002653
434 Ga0105239_10003540
435 Ga0105239_10004337
436 Ga0105246_10000147
437 Ga0157373_10000002
438 Ga0157373_10000008
439 Ga0157373_10000154
440 Ga0157373_10002052
441 Ga0157371_10000081
442 Ga0157371_10000255
443 Ga0157371_10000433
444 Ga0157371_10001655
445 Ga0157371_10021614
446 Ga0157371_10039291
447 Ga0157370_10000068
448 Ga0157370_10000153
449 Ga0157370_10000191
450 Ga0157370_10000375
451 Ga0157370_10001449
452 Ga0157370_10001543
453 Ga0157370_10002528
454 Ga0157370_10004295
455 Ga0157370_10006472
456 Ga0157370_10008252
457 Ga0157370_10009911
458 Ga0157369_10000575
459 Ga0157369_10002137
460 Ga0157369_10003252
461 Ga0163162_10003197
462 Ga0163162_10046097
463 Ga0157372_10052462
464 Ga0157375_10000460
465 Ga0182008_10000005
466 Ga0182008_10001074
467 Ga0182008_10003182
468 Ga0182006_1000100
469 Ga0182006_1000195
470 Ga0182006_1000668
471 Ga0182006_1005192
472 Ga0182005_1001603
473 Ga0163161_10000009
474 Ga0163161_10000543
475 Ga0163161_10048251
476 Ga0209437_100043
477 Ga0209675_1000066
478 Ga0209675_1000088
479 Ga0209675_1000279
480 Ga0209564_1000127
481 Ga0209758_1000615
482 Ga0207656_10000027
483 Ga0207655_1000008
484 Ga0207655_1001342
485 Ga0207680_10000058
486 Ga0207647_10003551
487 Ga0207645_10000198
488 Ga0207645_10009417
489 Ga0207654_10002655
490 Ga0207654_10006560
491 Ga0207695_10000702
492 Ga0207695_10001770
493 Ga0207671_10000209
494 Ga0207671_10002321
495 Ga0207671_10002557
496 Ga0207671_10002938
497 Ga0207652_10000043
498 Ga0207652_10002370
499 Ga0207652_10002751
500 Ga0207652_10004213
501 Ga0207709_10000010
502 Ga0207709_10000144
503 Ga0207689_10001133
504 Ga0207661_10002141
505 Ga0207667_10004337
506 Ga0207640_10016955
507 Ga0207703_10000493
508 Ga0207641_10000051
509 Ga0207648_10004185
510 Ga0207676_10033844
511 Ga0207674_10017449
512 Ga0207683_10003678
513 Ga0209281_1000037
514 Ga0209281_1000094
515 Ga0209281_1000158
516 Ga0209489_106209
517 Ga0209282_1010175
518 Ga0268266_10000057
519 Ga0268264_10000143
520 Ga0268264_10017375
521 Ga0265323_10000635
522 Ga0265316_10004615
523 Ga0265316_10005999
524 Ga0307408_100000130
525 Ga0307516_10001788
526 Ga0307405_10000021
527 Ga0307413_10000228
528 Ga0307410_10000216
529 Ga0307406_10000039
530 Ga0307412_10000090
531 Ga0307414_10000001
532 Ga0307414_10000002
533 Ga0307414_10000104
534 Ga0307414_10000133
535 Ga0307414_10000221
536 Ga0307414_10000264
537 Ga0307414_10000340
538 Ga0307414_10000348
539 Ga0307414_10002950
540 Ga0307414_10002967
541 Ga0307414_10003816
542 Ga0307414_10011910
543 Ga0307411_10000001
544 Ga0307411_10000004
545 Ga0307411_10000010
546 Ga0395900_0020664
547 Ga0395898_0012127
548 Ga0395905_0000515
549 Ga0395905_0000795
550 Ga0395901_0001357
551 Ga0395901_0027547
552 Ga0439447_002095
553 Ga0439447_002140
554 Ga0439447_002701
555 Ga0466969_0000101
556 Ga0466972_0000013
557 Ga0466972_0012682
558 Ga0453684_0003552
559 Ga0466959_0000017
560 Ga0495627_000002
561 Ga0495606_0031409
562 Ga0495632_0008677
563 Ga0495643_0021021
564 Ga0495648_0025007
565 Ga0495663_0001204
566 Ga0495654_0000001
567 Ga0495609_0000003
568 Ga0495609_0000119
569 Ga0495633_0000001
570 Ga0495668_0001269
571 Ga0495668_0008055
572 Ga0495611_0000873
573 Ga0495625_0001710
574 Ga0495687_000111
575 Ga0495686_0000113
576 Ga0495686_0000125
577 Ga0495686_0007234
578 Ga0496116_0000390
579 Ga0496116_0002031
580 Ga0496116_0010596
581 Ga0496117_0000023
582 Ga0496117_0000139
583 Ga0496117_0005409
584 Ga0496118_0006560
585 Ga0496119_0000002
586 Ga0496119_0000010
587 Ga0496121_0000026
588 Ga0496121_0023579
589 Ga0496121_0043161
590 Ga0496122_0000277
591 Ga0496122_0000465
592 Ga0496122_0000855
593 Ga0496122_0001168
594 Ga0496122_0013409
595 Ga0496124_0008159
596 Ga0496124_0044740
597 Ga0496125_0000026
598 Ga0496125_0000255
599 Ga0496125_0000567
600 Ga0496125_0000661
601 Ga0496126_0001177
602 Ga0501031_0002264
603 Ga0501032_0005100
604 Ga0501033_0000004
605 Ga0501034_0000216
606 Ga0501037_0007091
607 Ga0501038_0011048
608 Ga0501039_0006198
609 Ga0501047_0038152
610 Ga0501238_000041
611 Ga0501249_000014
612 Ga0501249_000028
613 Ga0501249_000070
614 Ga0501219_000003
615 Ga0501225_0001406
616 Ga0501266_000009
617 Ga0501266_000011
618 Ga0501266_000014
619 Ga0501269_000001
620 Ga0501280_000178
621 Ga0501035_0005370
622 Ga0501044_0009996
623 Ga0501045_0000076
624 Ga0501284_00027
625 Ga0501284_00149
626 Ga0500578_0000628
627 Ga0500646_0000636
628 Ga0500583_0000208
629 Ga0500641_0000048
630 Ga0500641_0000089
631 Ga0500616_0001380
632 Ga0500616_0005649
633 Ga0500622_0002992
634 Ga0501084_0000954
635 2520878680
636 2520881075
637 2522549995
638 2524006077
639 2585141747
640 2587746484
641 2587865974
642 2587941865
643 2587943496
644 2588209162
645 2588211241
646 2588212694
647 2588222516
648 2588447311
649 2590600620
650 2590612085
651 2590612619
652 2644371979
653 2644372510
654 2644643181
655 2644683916
656 2644685952
657 2722727997
658 2729199343
659 2729200532
660 2738726254
661 2738737089
662 2738769629
663 2739218671
664 2739999403
665 2740004220
666 2740057791
667 2753670884
668 2753672298
669 2753674454
670 2765576601
671 2802652195
672 2802653122
673 2816872508
674 2816873234
675 2816875271
676 2817415052
677 2819575852
678 2821138398
679 2833640789
680 2842087573
681 2842087721
682 2857616777
683 2857618503
684 2857621286
685 2871722615
686 2881359927
687 2881363406
688 2881958519
689 2889291140
690 2889292354
691 2889292956
692 2896318264
693 2903896168
694 2903897013
695 2904421360
696 2904469194
697 2904555971
698 2904559953
699 2904781429
700 2904784907
701 2904785267
702 2906000348
703 2919177847
704 2919177886
705 2919196148
706 2919399886
707 2919684407
708 2919697133
709 2929152227
710 2929243670
711 2945926416
712 2946021014
713 2958460076
714 2958461033
715 2958514638
716 2977243755
717 2977244613
718 2977268925
719 2977269063
720 2977270099
721 2977270869
722 2984576533
723 2984609989
724 2993372643
725 8036737406
726 8055593547
727 8055594245
728 8056441590

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF17657

DNA_pol3_finger

Bacterial DNA polymerase III alpha subunit finger domain

520

697

0.95

PF07733

DNA_pol3_alpha

Bacterial DNA polymerase III alpha NTPase domain

249

513

0.93

PF02811

PHP

PHP domain

3

115

0.86

PF14579

HHH_6

Helix-hairpin-helix motif

769

891

0.82

Structural Annotation

Top 5 Hits

ID Description Score Start End
5dlq-assembly2.cif.gz_E crystal structure of rangtp-exportin 4-eif5a complex 0.8599 898 930
2hnh-assembly1.cif.gz_A crystal structure of the catalytic alpha subunit of e. coli replicative dna polymerase iii 0.8532 2 822
5lew-assembly1.cif.gz_A dna polymerase 0.846 2 821
1l1o-assembly1.cif.gz_E structure of the human replication protein a (rpa) trimerization core 0.8448 893 970
4jom-assembly1.cif.gz_A structure of e. coli pol iii 3mphp mutant 0.8437 1 826
ID Description Score Start End Superfamily
af_P9WNT5_829_920_1.10.150.870 Mainly Alpha;Orthogonal Bundle;DNA polymerase; domain 1; 0.9179 712 801 1.10.150.870
af_P9WNT5_829_920_1.10.150.870 Mainly Alpha;Orthogonal Bundle;DNA polymerase; domain 1; 0.8903 712 801 1.10.150.870
1l1oE00 Mainly Beta;Beta Barrel;OB fold (Dihydrolipoamide Acetyltransferase, E2P);Nucleic acid-binding proteins 0.8448 893 970 2.40.50.140
af_P10443_981_1074_2.40.50.140 Mainly Beta;Beta Barrel;OB fold (Dihydrolipoamide Acetyltransferase, E2P);Nucleic acid-binding proteins 0.8356 891 969 2.40.50.140
af_A0A0R0JA37_7_107_2.40.50.140 Mainly Beta;Beta Barrel;OB fold (Dihydrolipoamide Acetyltransferase, E2P);Nucleic acid-binding proteins 0.8325 893 956 2.40.50.140
ID Description Score Start End GO Terms
AF-A0A3B9NEE3-F1-model_v4 PHP domain-containing protein 0.9871 29 115
AF-A0A2R7KFY8-F1-model_v4 DNA polymerase III subunit alpha 0.9741 1 474 GO:0006260
GO:0008408
AF-A0A662CT64-F1-model_v4 DNA polymerase III subunit alpha 0.9728 451 977 GO:0006260
GO:0008408
AF-A0A2R7KFY8-F1-model_v4 DNA polymerase III subunit alpha 0.9721 1 474 GO:0006260
GO:0008408
AF-A0A662CT64-F1-model_v4 DNA polymerase III subunit alpha 0.9692 451 977 GO:0006260
GO:0008408

Map