F436863

General Info

Members Datasets Scaffolds Average Seq Length
408 204 378 239

Family's Representative Sequence

Representative Sequence iso_pu_bacteria|2833640130|2833641325
Length 235
Sequence DDYLSGQVLLIDKPLHWTSFQVVNKLRWEIRQAFKLKKIKVGHAGTLDPLATGLLVICTGKMTKEIDSFQAQIKEYTGTIVLGSTTPSFDLETEINETFPTHHITEALIKETTKQFTGEIQQFPPVFSAIKKDGKRLYEFARAGEEVDIKPRTVNISEFEITNMDTSTALGTGSIDIDFRVVCSKGTYIRSLANDFGKALQSGGHLSALRRTKIGKFHVDDSVSIETFINRLSLE

Samples

Sample ID Description Type Environment
1 2162886007 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 v1 Metagenome Rhizosphere
2 2585427687 Pedobacter borealis DSM 19626 Isolate Rhizosphere
3 2599185184 Mucilaginibacter sp. NFR10 Isolate Rhizoplane
4 2738541283 Pedobacter sp. OK701 Isolate Unclassified
5 2738541284 Pedobacter sp. YR016 Isolate Unclassified
6 2738541302 Pedobacter sp. CF074 Isolate Unclassified
7 2738543023 Pedobacter sp. OK628 Isolate Unclassified
8 2739367651 Pedobacter sp. OK291 Isolate Unclassified
9 2739367656 Pedobacter sp. CF523 Isolate Unclassified
10 2739367663 Pedobacter sp. YR510 Isolate Unclassified
11 2775506987 Pedobacter ginsengisoli T01R-27 Isolate Unclassified
12 2818991437 Pedobacter terrae 518 Isolate Unclassified
13 2833640130 Mariniflexile sp. TRM1-10 Isolate Rhizosphere
14 2842722452 Pedobacter sp. R-72249 Isolate Unclassified
15 2842909656 Pedobacter sp. R-72393 Isolate Unclassified
16 2849281842 Pedobacter sp. AK013 Isolate Rhizosphere
17 2852623160 Mucilaginibacter sp. AK015 Isolate Rhizosphere
18 2852627209 Pedobacter sp. AK017 Isolate Rhizosphere
19 2857627736 Pedobacter sp. R-74587 Isolate Unclassified
20 2884933994 Mucilaginibacter sp. 14171R-50 Isolate Rhizosphere
21 2895498888 Pseudoxanthomonas sp. SGD-10 Isolate Rhizosphere
22 2902048731 Pedobacter ureilyticus THG-T11 Isolate Rhizosphere
23 2904445276 Pedobacter terrae 1734 Isolate Rhizosphere
24 2919186247 Pedobacter africanus 2697 Isolate Rhizosphere
25 2919437846 Mucilaginibacter pocheonensis 3262 Isolate Rhizosphere
26 2928078545 Mucilaginibacter rubeus 1215 Isolate Unclassified
27 2928147474 Mucilaginibacter rubeus 2025 Isolate Unclassified
28 2932082852 Mucilaginibacter sp. 3215 Isolate Rhizosphere
29 2939664404 Pedobacter africanus 2990 Isolate Rhizosphere
30 2954016120 Flavobacterium sp. W4I14 Isolate Rhizosphere
31 3300001979 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6 Metagenome Rhizosphere
32 3300001989 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5 Metagenome Rhizosphere
33 3300001990 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3 Metagenome Rhizosphere
34 3300002067 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C1 Metagenome Rhizosphere
35 3300002737 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mTSA Metagenome Endosphere
36 3300002772 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mMS Metagenome Endosphere
37 3300002773 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMS Metagenome Endosphere
38 3300002774 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mTSA Metagenome Endosphere
39 3300003187 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mLB Metagenome Endosphere
40 3300003214 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mCL Metagenome Endosphere
41 3300003215 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF Metagenome Endosphere
42 3300003316 Sugarcane root Sample L1 Metagenome Unclassified
43 3300003320 Sugarcane root Sample H2 Metagenome Unclassified
44 3300003322 Sugarcane root Sample L2 Metagenome Unclassified
45 3300003323 Sugarcane root Sample H1 Metagenome Unclassified
46 3300003781 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mLB_r2 Metagenome Endosphere
47 3300003791 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 Metagenome Endosphere
48 3300005288 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Rhizosphere Soil Replicate 2: eDNA_1 v2 (version 2) Metagenome Rhizosphere
49 3300005289 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 v2 (version 2) Metagenome Rhizosphere
50 3300005327 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG Metagenome Rhizosphere
51 3300005329 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG Metagenome Rhizosphere
52 3300005338 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 Metagenome Rhizosphere
53 3300005339 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG Metagenome Rhizosphere
54 3300005355 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG Metagenome Rhizosphere
55 3300005356 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG Metagenome Rhizosphere
56 3300005364 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG Metagenome Rhizosphere
57 3300005366 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG Metagenome Rhizosphere
58 3300005439 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG Metagenome Rhizosphere
59 3300005455 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG Metagenome Rhizosphere
60 3300005457 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG Metagenome Rhizosphere
61 3300005530 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG Metagenome Rhizosphere
62 3300005535 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG Metagenome Rhizosphere
63 3300005539 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 Metagenome Rhizosphere
64 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
65 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
66 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
67 3300005616 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 Metagenome Rhizosphere
68 3300006195 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 Metagenome Endosphere
69 3300006237 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2) (version 2) Metagenome Rhizosphere
70 3300006358 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 Metagenome Rhizosphere
71 3300006881 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 Metagenome Rhizosphere
72 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
73 3300009098 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG Metagenome Rhizosphere
74 3300009148 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG Metagenome Rhizosphere
75 3300009174 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG Metagenome Rhizosphere
76 3300009176 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG Metagenome Rhizosphere
77 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
78 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
79 3300009553 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG Metagenome Rhizosphere
80 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
81 3300011119 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG Metagenome Rhizosphere
82 3300013100 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6-5 metaG Metagenome Rhizosphere
83 3300013102 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG Metagenome Rhizosphere
84 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
85 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
86 3300013296 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG Metagenome Rhizosphere
87 3300013297 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG Metagenome Rhizosphere
88 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
89 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
90 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
91 3300014497 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-129_1 metaG Metagenome Rhizosphere
92 3300014745 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M5-5 metaG Metagenome Rhizosphere
93 3300015261 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-104_1 MetaG Metagenome Rhizosphere
94 3300015262 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-113_1 MetaG Metagenome Rhizosphere
95 3300015682 Rizhosphere microbial communities from mature sugarcane plants Campinas, Sao Paulo, Brazil - 001.1_A01 Metagenome Rhizosphere
96 3300017792 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG Metagenome Rhizosphere
97 3300020077 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5pm-1 (Metagenome Metatranscriptome) (v2) (version 2) Metatranscriptome Rhizosphere
98 3300025231 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mMS (SPAdes) (version 2) Metagenome Endosphere
99 3300025233 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mTSA (SPAdes) (version 2) Metagenome Endosphere
100 3300025245 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mTSA (SPAdes) (version 3) Metagenome Endosphere
101 3300025250 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mCL (SPAdes) (version 2) Metagenome Unclassified
102 3300025258 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMS (SPAdes) (version 3) Metagenome Endosphere
103 3300025261 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mCL (SPAdes) (version 2) Metagenome Endosphere
104 3300025292 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mLB_r2 (SPAdes) (version 2) Metagenome Endosphere
105 3300025294 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mLB (SPAdes) (version 2) Metagenome Endosphere
106 3300025297 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF (SPAdes) (version 2) Metagenome Endosphere
107 3300025298 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 (SPAdes) (version 2) Metagenome Endosphere
108 3300025904 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2 (SPAdes) (version 2) Metagenome Rhizosphere
109 3300025907 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
110 3300025909 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
111 3300025911 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
112 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
113 3300025914 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
114 3300025919 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
115 3300025921 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
116 3300025924 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
117 3300025927 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
118 3300025931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
119 3300025932 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
120 3300025933 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
121 3300025934 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
122 3300025937 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
123 3300025938 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 (SPAdes) (version 2) Metagenome Rhizosphere
124 3300025941 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
125 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
126 3300026023 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 (SPAdes) (version 2) Metagenome Rhizosphere
127 3300026041 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes) (version 2) Metagenome Rhizosphere
128 3300026067 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
129 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
130 3300026089 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes) (version 2) Metagenome Rhizosphere
131 3300026121 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
132 3300026142 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes) (version 2) Metagenome Rhizosphere
133 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
134 3300028786 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 23_EM Metagenome Unclassified
135 3300028794 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM Metagenome Unclassified
136 3300028800 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG Metagenome Rhizosphere
137 3300031548 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3 Metagenome Rhizosphere
138 3300031731 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-1 Metagenome Rhizosphere
139 3300031852 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-3 Metagenome Rhizosphere
140 3300031901 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2 Metagenome Rhizosphere
141 3300031903 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-1 Metagenome Rhizosphere
142 3300031911 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1 Metagenome Rhizosphere
143 3300031995 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2 Metagenome Rhizosphere
144 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
145 3300032004 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3 Metagenome Rhizosphere
146 3300032005 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-1 Metagenome Rhizosphere
147 3300033179 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 7_EM Metagenome Unclassified
148 3300033180 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 12_EM Metagenome Unclassified
149 3300035398 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_050615r2r1 Metagenome Rhizosphere
150 3300037312 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_B SG_2 Metagenome Rhizosphere
151 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
152 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
153 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
154 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
155 3300039447 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2 v2 Metagenome Rhizosphere
156 3300041452 Perennial ryegrass root microbial community from Lincoln, Canterbury, New Zealand - RGR17_4 MetaG Metagenome Rhizoplane
157 3300041494 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR17_3 MetaG Metagenome Unclassified
158 3300042005 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0512LE14Z062817_5216 Metagenome Rhizosphere
159 3300044684 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC4R Metagenome Rhizosphere
160 3300045836 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC4R Metagenome Rhizosphere
161 3300046453 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co3_8_57 rhizosphere Metagenome Rhizosphere
162 3300046459 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL3_88_32 rhizosphere Metagenome Rhizosphere
163 3300046460 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co3_31_37 rhizosphere Metagenome Rhizosphere
164 3300046471 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co3_9_34 rhizosphere Metagenome Rhizosphere
165 3300046474 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co1_31_6 rhizosphere Metagenome Rhizosphere
166 3300046492 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co3_21_57 rhizosphere Metagenome Rhizosphere
167 3300046500 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co1_23_3 rhizosphere Metagenome Rhizosphere
168 3300046506 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co1_30_3 rhizosphere Metagenome Rhizosphere
169 3300046507 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co2_62_14 rhizosphere Metagenome Rhizosphere
170 3300046512 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co2_50_17 rhizosphere Metagenome Rhizosphere
171 3300046513 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-351-Co2_42_17 rhizosphere Metagenome Rhizosphere
172 3300046518 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co1_22_4 rhizosphere Metagenome Rhizosphere
173 3300046519 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co2_51_16 rhizosphere Metagenome Rhizosphere
174 3300046520 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co2_47_23 rhizosphere Metagenome Rhizosphere
175 3300046524 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co1_12_9 rhizosphere Metagenome Rhizosphere
176 3300046528 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co1_24_3 rhizosphere Metagenome Rhizosphere
177 3300046538 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co1_12_7 rhizosphere Metagenome Rhizosphere
178 3300046557 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL1_25_34 rhizosphere Metagenome Rhizosphere
179 3300046558 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co3_6_53 rhizosphere Metagenome Rhizosphere
180 3300046616 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co1_14_4 rhizosphere Metagenome Rhizosphere
181 3300046660 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co1_32_7 rhizosphere Metagenome Rhizosphere
182 3300046665 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co3_16_51 rhizosphere Metagenome Rhizosphere
183 3300046683 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-904-CL3_91_3 rhizosphere Metagenome Rhizosphere
184 3300046694 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 rhizosphere Metagenome Rhizosphere
185 3300046809 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-258-CL2_67_23 rhizosphere Metagenome Rhizosphere
186 3300046810 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co2_51_17 rhizosphere Metagenome Rhizosphere
187 3300047317 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-307-CL2_57_8 rhizosphere Metagenome Rhizosphere
188 3300047323 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWA-24-3-Co3_23_35 rhizosphere Metagenome Rhizosphere
189 3300047443 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co3_24_32 rhizosphere Metagenome Rhizosphere
190 3300047472 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co2_54_22 rhizosphere Metagenome Rhizosphere
191 3300048089 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL3_84_27 rhizosphere Metagenome Rhizosphere
192 3300048925 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8x unlabeled Metagenome Unclassified
193 3300048926 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8y unlabeled Metagenome Unclassified
194 3300049459 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co2_62_24 rhizosphere Metagenome Rhizosphere
195 3300049460 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWA-24-3-Co2_41_10 rhizosphere Metagenome Rhizosphere
196 3300049758 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - D15_A_3_drought Metagenome Rhizosphere
197 3300050493 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 re-annotation Metagenome Endosphere
198 3300053080 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-905-CL1_32_20 endosphere Metagenome Endosphere
199 3300053122 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL3_77_6 endosphere Metagenome Endosphere
200 3300053123 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-845-CL3_80_19 endosphere Metagenome Endosphere
201 3300053125 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL1_28_5 endosphere Metagenome Endosphere
202 3300053157 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-86-CL2_69_17 endosphere Metagenome Endosphere
203 3300053161 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co3_16_51 endosphere Metagenome Endosphere
204 8036736890 Flavobacterium dauae TCH3-2 Isolate Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 92.4
Metatranscriptomes 0.25
Isolates 7.35

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 8.33
Nodule 0
Rhizoplane 0.49
Rhizosphere 82.35
Stem 0
Stem Tuber 0
Unclassified 8.82

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 SwRhRL2b_contig_2422272 2162886007 Bacteria 11793
2 JGI24740J21852_10024599 3300001979 Bacteria 2042
3 JGI24739J22299_10015236 3300001989 Bacteria 2793
4 JGI24739J22299_10021787 3300001989 Bacteria 2277
5 JGI24737J22298_10000136 3300001990 Bacteria 22522
6 JGI24737J22298_10001233 3300001990 Bacteria 9028
7 JGI24737J22298_10001783 3300001990 Bacteria 7705
8 JGI24735J21928_10000007 3300002067 Bacteria 333510
9 JGI24735J21928_10056999 3300002067 Bacteria 1124
10 JGI25162J39368_1000118 3300002737 Bacteria 87343
11 JGI25162J39368_1000964 3300002737 Bacteria 18324
12 JGI25164J39214_1001320 3300002772 Bacteria 6222
13 JGI25152J39213_1000537 3300002773 Bacteria 20946
14 JGI25150J39212_1000001 3300002774 Bacteria 1318726
15 JGI25151J46595_10000001 3300003187 Bacteria 887211
16 JGI25165J46597_1002842 3300003214 Bacteria 4959
17 JGI25153J46596_10000001 3300003215 Bacteria 748985
18 rootH1_10111249 3300003316 Bacteria 7260
19 rootH2_10000984 3300003320 Bacteria 89440
20 rootH2_10015381 3300003320 Bacteria 19009
21 rootH2_10149832 3300003320 Bacteria 3618
22 rootL2_10029502 3300003322 Bacteria 3208
23 rootH1_10006508 3300003323 Bacteria 33986
24 rootH1_10209256 3300003323 Bacteria 2609
25 rootH1_10245574 3300003323 Bacteria 2634
26 rootH1_10280445 3300003323 Bacteria 2243
27 rootH1_10388377 3300003323 Bacteria 1895
28 Ga0055536_1000004 3300003781 Bacteria 411108
29 Ga0055530_10001168 3300003791 Bacteria 20349
30 Ga0065714_10002656 3300005288 Bacteria 14911
31 Ga0065714_10002719 3300005288 Bacteria 11749
32 Ga0065714_10006923 3300005288 Bacteria 3069
33 Ga0065714_10017178 3300005288 Bacteria 1303
34 Ga0065714_10064556 3300005288 Bacteria 36513
35 Ga0065714_10086839 3300005288 Bacteria 2083
36 Ga0065714_10088976 3300005288 Bacteria 1996
37 Ga0065714_10112251 3300005288 Bacteria 1458
38 Ga0065714_10112429 3300005288 Bacteria 1456
39 Ga0065714_10115290 3300005288 Bacteria 1418
40 Ga0065714_10127195 3300005288 Bacteria 1281
41 Ga0065704_10070251 3300005289 Bacteria 48366
42 Ga0065704_10072005 3300005289 Bacteria 9404
43 Ga0065704_10090427 3300005289 Bacteria 2788
44 Ga0065704_10102266 3300005289 Bacteria 2211
45 Ga0070658_10000041 3300005327 Bacteria 134208
46 Ga0070658_10033495 3300005327 Bacteria 4134
47 Ga0070658_10375408 3300005327 Bacteria 1219
48 Ga0070683_100031421 3300005329 Bacteria 4828
49 Ga0068868_100027133 3300005338 Bacteria 4367
50 Ga0070660_100097566 3300005339 Bacteria 2325
51 Ga0070671_100007505 3300005355 Bacteria 8716
52 Ga0070674_100407128 3300005356 Bacteria 1113
53 Ga0070673_100007512 3300005364 Bacteria 7199
54 Ga0070659_100003773 3300005366 Bacteria 10814
55 Ga0070659_100052690 3300005366 Bacteria 3201
56 Ga0070659_100090504 3300005366 Bacteria 2452
57 Ga0070711_100439585 3300005439 Bacteria 1066
58 Ga0070663_100008132 3300005455 Bacteria 6435
59 Ga0070662_100000053 3300005457 Bacteria 61062
60 Ga0070679_100024394 3300005530 Bacteria 5925
61 Ga0070684_100439335 3300005535 Bacteria 1205
62 Ga0068853_100020158 3300005539 Bacteria 5543
63 Ga0068853_100113361 3300005539 Bacteria 2411
64 Ga0068853_100404605 3300005539 Bacteria 1278
65 Ga0070665_100000096 3300005548 Bacteria 166864
66 Ga0068855_100000426 3300005563 Bacteria 52084
67 Ga0068855_100000611 3300005563 Bacteria 43912
68 Ga0068855_100043169 3300005563 Bacteria 5343
69 Ga0068855_100060982 3300005563 Bacteria 4407
70 Ga0068855_100202035 3300005563 Bacteria 2237
71 Ga0068855_100211664 3300005563 Bacteria 2178
72 Ga0068855_100595047 3300005563 Bacteria 1193
73 Ga0068855_100664280 3300005563 Bacteria 1118
74 Ga0068856_100000006 3300005614 Bacteria 223827
75 Ga0068856_100014921 3300005614 Bacteria 7501
76 Ga0068856_100079730 3300005614 Bacteria 3247
77 Ga0068856_100096304 3300005614 Bacteria 2948
78 Ga0068856_100135531 3300005614 Bacteria 2467
79 Ga0068852_100004125 3300005616 Bacteria 10228
80 Ga0068852_100773122 3300005616 Bacteria 973
81 Ga0075366_10002252 3300006195 Bacteria 9861
82 Ga0075366_10003659 3300006195 Bacteria 8149
83 Ga0097621_100000330 3300006237 Bacteria 32160
84 Ga0068871_100000085 3300006358 Bacteria 53374
85 Ga0068865_100000096 3300006881 Bacteria 46186
86 Ga0105240_10001259 3300009093 Bacteria 43960
87 Ga0105240_10011380 3300009093 Bacteria 12392
88 Ga0105240_10025540 3300009093 Bacteria 7761
89 Ga0105240_10084095 3300009093 Bacteria 3902
90 Ga0105240_10109309 3300009093 Bacteria 3348
91 Ga0105240_10152993 3300009093 Bacteria 2746
92 Ga0105240_10454556 3300009093 Bacteria 1432
93 Ga0105240_10587440 3300009093 Bacteria 1228
94 Ga0105245_10209363 3300009098 Bacteria 1876
95 Ga0105243_10106119 3300009148 Bacteria 2341
96 Ga0105241_10001784 3300009174 Bacteria 16342
97 Ga0105241_10004818 3300009174 Bacteria 9942
98 Ga0105241_10120215 3300009174 Bacteria 2114
99 Ga0105241_10145871 3300009174 Bacteria 1931
100 Ga0105241_10388410 3300009174 Bacteria 1221
101 Ga0105242_10060350 3300009176 Bacteria 3116
102 Ga0105237_10002031 3300009545 Bacteria 25729
103 Ga0105237_10002840 3300009545 Bacteria 21062
104 Ga0105237_10011689 3300009545 Bacteria 9287
105 Ga0105237_10017720 3300009545 Bacteria 7383
106 Ga0105237_10038690 3300009545 Bacteria 4816
107 Ga0105237_10089528 3300009545 Bacteria 3067
108 Ga0105237_10144634 3300009545 Bacteria 2372
109 Ga0105237_10170309 3300009545 Bacteria 2177
110 Ga0105238_10001721 3300009551 Bacteria 22054
111 Ga0105238_10071970 3300009551 Bacteria 3454
112 Ga0105238_10108134 3300009551 Bacteria 2762
113 Ga0105238_10378580 3300009551 Bacteria 1406
114 Ga0105249_10231898 3300009553 Bacteria 1821
115 Ga0105239_10000011 3300010375 Bacteria 337500
116 Ga0105239_10000115 3300010375 Bacteria 113217
117 Ga0105239_10000645 3300010375 Bacteria 49516
118 Ga0105239_10000955 3300010375 Bacteria 40720
119 Ga0105239_10002115 3300010375 Bacteria 25648
120 Ga0105239_10004892 3300010375 Bacteria 15850
121 Ga0105239_10204385 3300010375 Bacteria 2213
122 Ga0105246_10047515 3300011119 Bacteria 2931
123 Ga0105246_10203631 3300011119 Bacteria 1540
124 Ga0105246_10783703 3300011119 Bacteria 844
125 Ga0105246_10794329 3300011119 Bacteria 839
126 Ga0157373_10000050 3300013100 Bacteria 106011
127 Ga0157373_10000487 3300013100 Bacteria 31398
128 Ga0157373_10003753 3300013100 Bacteria 11489
129 Ga0157373_10010960 3300013100 Bacteria 6674
130 Ga0157373_10040360 3300013100 Bacteria 3340
131 Ga0157371_10000041 3300013102 Bacteria 203957
132 Ga0157371_10000164 3300013102 Bacteria 96408
133 Ga0157371_10000486 3300013102 Bacteria 48340
134 Ga0157371_10001175 3300013102 Bacteria 28108
135 Ga0157371_10023476 3300013102 Bacteria 4510
136 Ga0157371_10307655 3300013102 Bacteria 1148
137 Ga0157370_10000303 3300013104 Bacteria 61868
138 Ga0157370_10010121 3300013104 Bacteria 9958
139 Ga0157370_10013668 3300013104 Bacteria 8347
140 Ga0157370_10023390 3300013104 Bacteria 6134
141 Ga0157370_10042921 3300013104 Bacteria 4355
142 Ga0157370_10048714 3300013104 Bacteria 4059
143 Ga0157370_10056727 3300013104 Bacteria 3727
144 Ga0157370_10178863 3300013104 Bacteria 1971
145 Ga0157370_10181196 3300013104 Bacteria 1957
146 Ga0157370_10506421 3300013104 Bacteria 1109
147 Ga0157370_10566259 3300013104 Bacteria 1041
148 Ga0157369_10000016 3300013105 Bacteria 257827
149 Ga0157369_10000494 3300013105 Bacteria 52196
150 Ga0157369_10038579 3300013105 Bacteria 5223
151 Ga0157369_10067509 3300013105 Bacteria 3844
152 Ga0157369_10298908 3300013105 Bacteria 1675
153 Ga0157369_11013578 3300013105 Unclassified 850
154 Ga0157374_10000536 3300013296 Bacteria 34007
155 Ga0157374_10132988 3300013296 Bacteria 2409
156 Ga0157378_10430369 3300013297 Bacteria 1306
157 Ga0163162_10000005 3300013306 Bacteria 447195
158 Ga0163162_10000165 3300013306 Bacteria 60772
159 Ga0163162_10002585 3300013306 Bacteria 17137
160 Ga0157372_10000042 3300013307 Bacteria 157651
161 Ga0157372_10000249 3300013307 Bacteria 59656
162 Ga0157372_10003357 3300013307 Bacteria 17289
163 Ga0157372_10005922 3300013307 Bacteria 13010
164 Ga0157372_10081116 3300013307 Bacteria 3671
165 Ga0157372_10248584 3300013307 Bacteria 2064
166 Ga0157372_10287425 3300013307 Bacteria 1912
167 Ga0157375_10007860 3300013308 Bacteria 9333
168 Ga0157375_10116269 3300013308 Bacteria 2779
169 Ga0157375_10204884 3300013308 Bacteria 2129
170 Ga0182008_10000014 3300014497 Bacteria 263844
171 Ga0182008_10000703 3300014497 Bacteria 23901
172 Ga0182008_10000869 3300014497 Bacteria 21005
173 Ga0182008_10002603 3300014497 Bacteria 11208
174 Ga0182008_10012183 3300014497 Bacteria 4545
175 Ga0182008_10024604 3300014497 Bacteria 3064
176 Ga0157377_10028006 3300014745 Bacteria 3030
177 Ga0182006_1000295 3300015261 Bacteria 43826
178 Ga0182006_1000453 3300015261 Bacteria 32451
179 Ga0182006_1004826 3300015261 Bacteria 6549
180 Ga0182006_1013744 3300015261 Bacteria 3502
181 Ga0182006_1017387 3300015261 Bacteria 3055
182 Ga0182006_1036656 3300015261 Bacteria 1949
183 Ga0182006_1046626 3300015261 Bacteria 1683
184 Ga0182007_10000002 3300015262 Bacteria 564661
185 Ga0182007_10007256 3300015262 Bacteria 4664
186 Ga0182007_10010138 3300015262 Bacteria 3742
187 Ga0183373_1004 3300015682 Bacteria 537398
188 Ga0163161_10000212 3300017792 Bacteria 52935
189 Ga0163161_10000406 3300017792 Bacteria 36130
190 Ga0163161_10000783 3300017792 Bacteria 24993
191 Ga0163161_10001167 3300017792 Bacteria 19741
192 Ga0163161_10028770 3300017792 Bacteria 3948
193 Ga0206351_10986752 3300020077 Bacteria 1253
194 Ga0207427_100072 3300025231 Bacteria 158364
195 Ga0209437_100026 3300025233 Bacteria 542698
196 Ga0209437_100102 3300025233 Bacteria 224216
197 Ga0207425_1000002 3300025245 Bacteria 1362590
198 Ga0209026_1000287 3300025250 Bacteria 57255
199 Ga0209026_1001399 3300025250 Bacteria 10742
200 Ga0209129_1000002 3300025258 Bacteria 1359086
201 Ga0209233_1000111 3300025261 Bacteria 260262
202 Ga0209233_1002070 3300025261 Bacteria 7596
203 Ga0209233_1003596 3300025261 Bacteria 5434
204 Ga0209676_1000009 3300025292 Bacteria 981719
205 Ga0209025_1000004 3300025294 Bacteria 1361782
206 Ga0209758_1000006 3300025297 Bacteria 1359562
207 Ga0209050_1000048 3300025298 Bacteria 371553
208 Ga0207647_10000392 3300025904 Bacteria 35883
209 Ga0207647_10001469 3300025904 Bacteria 18105
210 Ga0207645_10000479 3300025907 Bacteria 33041
211 Ga0207705_10000068 3300025909 Bacteria 134316
212 Ga0207705_10456601 3300025909 Bacteria 991
213 Ga0207654_10002790 3300025911 Bacteria 8877
214 Ga0207654_10016039 3300025911 Bacteria 3896
215 Ga0207695_10000183 3300025913 Bacteria 181350
216 Ga0207695_10009990 3300025913 Bacteria 11658
217 Ga0207695_10016701 3300025913 Bacteria 8576
218 Ga0207695_10117440 3300025913 Bacteria 2633
219 Ga0207695_10150220 3300025913 Bacteria 2269
220 Ga0207695_10171998 3300025913 Bacteria 2091
221 Ga0207671_10000477 3300025914 Bacteria 54330
222 Ga0207671_10003272 3300025914 Bacteria 16295
223 Ga0207671_10003398 3300025914 Bacteria 15917
224 Ga0207671_10005410 3300025914 Bacteria 11763
225 Ga0207671_10005633 3300025914 Bacteria 11479
226 Ga0207671_10022141 3300025914 Bacteria 4809
227 Ga0207671_10022520 3300025914 Bacteria 4763
228 Ga0207671_10158220 3300025914 Bacteria 1753
229 Ga0207671_10203840 3300025914 Bacteria 1545
230 Ga0207657_10050302 3300025919 Bacteria 3627
231 Ga0207657_10105732 3300025919 Bacteria 2330
232 Ga0207652_10375110 3300025921 Bacteria 1284
233 Ga0207694_10061928 3300025924 Bacteria 2912
234 Ga0207694_10356701 3300025924 Bacteria 1211
235 Ga0207694_10425991 3300025924 Bacteria 1106
236 Ga0207687_10111690 3300025927 Bacteria 2029
237 Ga0207644_10038414 3300025931 Bacteria 3372
238 Ga0207690_10002626 3300025932 Bacteria 10818
239 Ga0207690_10011768 3300025932 Bacteria 5233
240 Ga0207690_10067118 3300025932 Bacteria 2459
241 Ga0207706_10000738 3300025933 Bacteria 34077
242 Ga0207686_10042856 3300025934 Bacteria 2770
243 Ga0207669_10238525 3300025937 Bacteria 1346
244 Ga0207704_10000511 3300025938 Bacteria 17246
245 Ga0207711_10796351 3300025941 Bacteria 880
246 Ga0207667_10000477 3300025949 Bacteria 53347
247 Ga0207667_10115223 3300025949 Bacteria 2770
248 Ga0207667_10215647 3300025949 Bacteria 1967
249 Ga0207667_10262516 3300025949 Bacteria 1766
250 Ga0207667_10593006 3300025949 Bacteria 1118
251 Ga0207677_10014530 3300026023 Bacteria 4601
252 Ga0207677_10036746 3300026023 Bacteria 3195
253 Ga0207639_10165319 3300026041 Bacteria 1869
254 Ga0207639_10418606 3300026041 Bacteria 1211
255 Ga0207678_10026689 3300026067 Bacteria 5039
256 Ga0207702_10000023 3300026078 Bacteria 189234
257 Ga0207702_10031946 3300026078 Bacteria 4391
258 Ga0207702_10120480 3300026078 Bacteria 2347
259 Ga0207702_10133626 3300026078 Bacteria 2236
260 Ga0207648_10046802 3300026089 Bacteria 3793
261 Ga0207683_10005145 3300026121 Bacteria 11231
262 Ga0207698_10654731 3300026142 Bacteria 1041
263 Ga0268266_10000185 3300028379 Bacteria 110685
264 Ga0307517_10001656 3300028786 Bacteria 36804
265 Ga0307515_10000676 3300028794 Bacteria 78539
266 Ga0307515_10004229 3300028794 Bacteria 29830
267 Ga0307515_10036275 3300028794 Bacteria 7982
268 Ga0307515_10168140 3300028794 Bacteria 2200
269 Ga0265338_10034526 3300028800 Bacteria 4886
270 Ga0307408_100001737 3300031548 Bacteria 15946
271 Ga0307405_10000004 3300031731 Bacteria 444977
272 Ga0307405_10000006 3300031731 Bacteria 361477
273 Ga0307410_10322600 3300031852 Bacteria 1226
274 Ga0307406_10011239 3300031901 Bacteria 5076
275 Ga0307407_10000003 3300031903 Bacteria 271723
276 Ga0307412_10000043 3300031911 Bacteria 166562
277 Ga0307412_10011913 3300031911 Bacteria 5050
278 Ga0307412_10403974 3300031911 Bacteria 1113
279 Ga0307409_100237713 3300031995 Bacteria 1656
280 Ga0307416_100000002 3300032002 Bacteria 509907
281 Ga0307416_100145940 3300032002 Bacteria 2160
282 Ga0307416_100943709 3300032002 Bacteria 964
283 Ga0307414_10000780 3300032004 Bacteria 16282
284 Ga0307414_10001658 3300032004 Bacteria 11579
285 Ga0307414_10003178 3300032004 Bacteria 8731
286 Ga0307414_10004022 3300032004 Bacteria 7936
287 Ga0307414_10010163 3300032004 Bacteria 5447
288 Ga0307414_10113529 3300032004 Bacteria 2068
289 Ga0307414_10120727 3300032004 Bacteria 2014
290 Ga0307411_10118768 3300032005 Unclassified 1908
291 Ga0307507_10000099 3300033179 Bacteria 139532
292 Ga0307510_10003549 3300033180 Bacteria 18202
293 Ga0316574_0097264 3300035398 Bacteria 1882
294 Ga0395899_0000177 3300037312 Bacteria 94226
295 Ga0395899_0000591 3300037312 Bacteria 38186
296 Ga0395899_0002988 3300037312 Bacteria 13513
297 Ga0395899_0014201 3300037312 Bacteria 6078
298 Ga0395900_0000139 3300037418 Bacteria 122708
299 Ga0395900_0001986 3300037418 Bacteria 23094
300 Ga0395900_0014739 3300037418 Bacteria 7968
301 Ga0395898_0008891 3300037466 Bacteria 10583
302 Ga0395905_0000169 3300037471 Bacteria 106579
303 Ga0395905_0001448 3300037471 Bacteria 28528
304 Ga0395901_0001552 3300038443 Bacteria 23803
305 Ga0395901_0017322 3300038443 Bacteria 7355
306 Ga0436361_1030299 3300039447 Bacteria 13943
307 Ga0451793_1746469 3300041452 Bacteria 1153
308 Ga0451837_1442426 3300041494 Bacteria 4803
309 Ga0439448_0017711 3300042005 Bacteria 2177
310 Ga0466966_0018404 3300044684 Bacteria 4608
311 Ga0466958_0166597 3300045836 Bacteria 1394
312 Ga0495627_002305 3300046453 Bacteria 9410
313 Ga0495629_0268123 3300046459 Bacteria 1173
314 Ga0495638_0110795 3300046460 Bacteria 1631
315 Ga0495650_0000081 3300046471 Bacteria 240957
316 Ga0495605_0163809 3300046474 Bacteria 986
317 Ga0495585_0000036 3300046492 Bacteria 135914
318 Ga0495585_0000170 3300046492 Bacteria 70224
319 Ga0495596_0105451 3300046500 Bacteria 1094
320 Ga0495583_0021826 3300046506 Bacteria 3283
321 Ga0495606_0000034 3300046507 Bacteria 247705
322 Ga0495606_0006808 3300046507 Bacteria 10436
323 Ga0495606_0022379 3300046507 Bacteria 4606
324 Ga0495606_0067315 3300046507 Bacteria 2268
325 Ga0495606_0299437 3300046507 Bacteria 872
326 Ga0495610_0000785 3300046512 Bacteria 29795
327 Ga0495610_0003232 3300046512 Bacteria 12886
328 Ga0495610_0004440 3300046512 Bacteria 10373
329 Ga0495616_0006681 3300046513 Bacteria 6961
330 Ga0495616_0032909 3300046513 Bacteria 2705
331 Ga0495631_0022164 3300046518 Bacteria 2954
332 Ga0495631_0141514 3300046518 Bacteria 1033
333 Ga0495632_0055420 3300046519 Bacteria 1941
334 Ga0495637_0007951 3300046520 Bacteria 5226
335 Ga0495648_0006447 3300046524 Bacteria 9577
336 Ga0495642_0177570 3300046528 Bacteria 926
337 Ga0495609_0008496 3300046538 Bacteria 5027
338 Ga0495609_0030451 3300046538 Bacteria 2456
339 Ga0495622_0033983 3300046557 Bacteria 2379
340 Ga0495633_0000006 3300046558 Bacteria 326774
341 Ga0495633_0020622 3300046558 Bacteria 3311
342 Ga0495633_0040658 3300046558 Bacteria 2214
343 Ga0495668_0000011 3300046616 Bacteria 472186
344 Ga0495625_0000049 3300046660 Bacteria 197646
345 Ga0495625_0000344 3300046660 Bacteria 71298
346 Ga0495625_0004622 3300046660 Bacteria 12939
347 Ga0495625_0033997 3300046660 Bacteria 3764
348 Ga0495625_0054507 3300046660 Bacteria 2855
349 Ga0495625_0070269 3300046660 Bacteria 2458
350 Ga0495661_0001086 3300046665 Bacteria 23886
351 Ga0495661_0005250 3300046665 Bacteria 9217
352 Ga0495661_0005856 3300046665 Bacteria 8687
353 Ga0495661_0186299 3300046665 Bacteria 1096
354 Ga0495658_0097338 3300046683 Bacteria 1751
355 Ga0495649_0000014 3300046694 Bacteria 287408
356 Ga0495600_0103502 3300046809 Bacteria 1855
357 Ga0495660_0004617 3300046810 Bacteria 8311
358 Ga0495604_0379129 3300047317 Bacteria 935
359 Ga0495683_0063409 3300047323 Bacteria 1826
360 Ga0495687_000249 3300047443 Bacteria 72846
361 Ga0495687_002369 3300047443 Bacteria 15247
362 Ga0495686_0000697 3300047472 Bacteria 45366
363 Ga0495614_0014670 3300048089 Bacteria 3426
364 Ga0496122_0004574 3300048925 Bacteria 17045
365 Ga0496123_0003497 3300048926 Bacteria 17513
366 Ga0495678_004589 3300049459 Bacteria 7942
367 Ga0495682_0026282 3300049460 Bacteria 2162
368 Ga0501241_003520 3300049758 Bacteria 2957
369 nmdc:mga0k408_1399_c1 3300050493 Bacteria 13048
370 nmdc:mga0k408_3582_c1 3300050493 Bacteria 8213
371 Ga0500635_0001631 3300053080 Bacteria 5409
372 Ga0500635_0003035 3300053080 Bacteria 4190
373 Ga0500608_097648 3300053122 Bacteria 1364
374 Ga0500614_029429 3300053123 Bacteria 1333
375 Ga0500618_000016 3300053125 Bacteria 164049
376 Ga0500618_030133 3300053125 Bacteria 1278
377 Ga0500624_000243 3300053157 Bacteria 19155
378 Ga0500634_0114162 3300053161 Bacteria 1327

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 3300025921 Ga0207652_10375110 Ga0207652_103751102 216
2 3300005288 Ga0065714_10112251 Ga0065714_101122512 217
3 3300011119 Ga0105246_10783703 Ga0105246_107837031 218
4 3300035398 Ga0316574_0097264 Ga0316574_0097264_291_977 219
5 3300032004 Ga0307414_10004022 Ga0307414_100040226 221
6 3300009098 Ga0105245_10209363 Ga0105245_102093631 222
7 iso_pu_bacteria 2833640130 2833641325 222
8 3300046453 Ga0495627_002305 Ga0495627_002305_7732_8430 223
9 3300005289 Ga0065704_10072005 Ga0065704_100720055 224
10 3300006195 Ga0075366_10002252 Ga0075366_100022527 224
11 3300013307 Ga0157372_10287425 Ga0157372_102874252 224
12 3300015261 Ga0182006_1036656 Ga0182006_10366562 224
13 3300031731 Ga0307405_10000004 Ga0307405_10000004229 224
14 3300031901 Ga0307406_10011239 Ga0307406_100112395 224
15 3300046528 Ga0495642_0177570 Ga0495642_0177570_89_787 224
16 3300050493 nmdc:mga0k408_1399_c1 nmdc:mga0k408_1399_c1_8393_9106 224
17 iso_pu_bacteria 2852623160 2852625480 224
18 iso_pu_bacteria 2852627209 2852630923 224
19 iso_pu_bacteria 2884933994 2884934484 224
20 iso_pu_bacteria 8036736890 8036737641 224
21 3300005530 Ga0070679_100024394 Ga0070679_1000243942 225
22 3300009093 Ga0105240_10587440 Ga0105240_105874401 225
23 iso_pu_bacteria 2599185184 2599479903 225
24 iso_pu_bacteria 2919437846 2919443093 225
25 iso_pu_bacteria 2928078545 2928081032 225
26 iso_pu_bacteria 2928147474 2928152551 225
27 iso_pu_bacteria 2932082852 2932087397 225
28 3300005327 Ga0070658_10033495 Ga0070658_100334953 226
29 3300005439 Ga0070711_100439585 Ga0070711_1004395851 226
30 3300005563 Ga0068855_100000611 Ga0068855_10000061122 226
31 3300005614 Ga0068856_100000006 Ga0068856_10000000640 226
32 3300025949 Ga0207667_10000477 Ga0207667_1000047729 226
33 3300026078 Ga0207702_10000023 Ga0207702_1000002324 226
34 3300026078 Ga0207702_10031946 Ga0207702_100319462 226
35 3300046474 Ga0495605_0163809 Ga0495605_0163809_188_904 226
36 3300046665 Ga0495661_0005856 Ga0495661_0005856_5389_6105 226
37 3300041494 Ga0451837_1442426 Ga0451837_1442426_80_784 227
38 iso_pu_bacteria 2738541283 2738756699 227
39 3300005288 Ga0065714_10017178 Ga0065714_100171781 228
40 3300005327 Ga0070658_10000041 Ga0070658_1000004147 228
41 3300005539 Ga0068853_100404605 Ga0068853_1004046052 228
42 3300005563 Ga0068855_100202035 Ga0068855_1002020352 228
43 3300009093 Ga0105240_10109309 Ga0105240_101093095 228
44 3300009093 Ga0105240_10152993 Ga0105240_101529932 228
45 3300009545 Ga0105237_10002840 Ga0105237_100028408 228
46 3300010375 Ga0105239_10000115 Ga0105239_1000011575 228
47 3300013105 Ga0157369_11013578 Ga0157369_110135781 228
48 3300025909 Ga0207705_10000068 Ga0207705_1000006877 228
49 3300025913 Ga0207695_10150220 Ga0207695_101502202 228
50 3300025913 Ga0207695_10171998 Ga0207695_101719981 228
51 3300025914 Ga0207671_10005633 Ga0207671_100056338 228
52 3300026041 Ga0207639_10418606 Ga0207639_104186062 228
53 3300046507 Ga0495606_0022379 Ga0495606_0022379_2935_3654 228
54 3300001989 JGI24739J22299_10015236 JGI24739J22299_100152362 229
55 3300001989 JGI24739J22299_10021787 JGI24739J22299_100217872 229
56 3300001990 JGI24737J22298_10000136 JGI24737J22298_1000013620 229
57 3300001990 JGI24737J22298_10001783 JGI24737J22298_100017836 229
58 3300002067 JGI24735J21928_10000007 JGI24735J21928_1000000759 229
59 3300002737 JGI25162J39368_1000118 JGI25162J39368_100011839 229
60 3300002737 JGI25162J39368_1000964 JGI25162J39368_10009649 229
61 3300002772 JGI25164J39214_1001320 JGI25164J39214_10013207 229
62 3300003214 JGI25165J46597_1002842 JGI25165J46597_10028423 229
63 3300003316 rootH1_10111249 rootH1_101112492 229
64 3300003320 rootH2_10000984 rootH2_1000098452 229
65 3300003320 rootH2_10149832 rootH2_101498321 229
66 3300003322 rootL2_10029502 rootL2_100295023 229
67 3300003323 rootH1_10006508 rootH1_1000650829 229
68 3300003323 rootH1_10280445 rootH1_102804452 229
69 3300005288 Ga0065714_10088976 Ga0065714_100889762 229
70 3300005327 Ga0070658_10375408 Ga0070658_103754082 229
71 3300005338 Ga0068868_100027133 Ga0068868_1000271334 229
72 3300005355 Ga0070671_100007505 Ga0070671_1000075054 229
73 3300005356 Ga0070674_100407128 Ga0070674_1004071281 229
74 3300005364 Ga0070673_100007512 Ga0070673_1000075122 229
75 3300005366 Ga0070659_100090504 Ga0070659_1000905042 229
76 3300005457 Ga0070662_100000053 Ga0070662_10000005352 229
77 3300005539 Ga0068853_100020158 Ga0068853_1000201583 229
78 3300005539 Ga0068853_100113361 Ga0068853_1001133612 229
79 3300005548 Ga0070665_100000096 Ga0070665_10000009673 229
80 3300005563 Ga0068855_100000426 Ga0068855_1000004264 229
81 3300005563 Ga0068855_100043169 Ga0068855_1000431692 229
82 3300005563 Ga0068855_100060982 Ga0068855_1000609823 229
83 3300005563 Ga0068855_100211664 Ga0068855_1002116642 229
84 3300005563 Ga0068855_100664280 Ga0068855_1006642802 229
85 3300005614 Ga0068856_100014921 Ga0068856_1000149216 229
86 3300005614 Ga0068856_100079730 Ga0068856_1000797302 229
87 3300005614 Ga0068856_100096304 Ga0068856_1000963042 229
88 3300005616 Ga0068852_100004125 Ga0068852_1000041255 229
89 3300006195 Ga0075366_10003659 Ga0075366_100036596 229
90 3300006237 Ga0097621_100000330 Ga0097621_1000003304 229
91 3300006358 Ga0068871_100000085 Ga0068871_10000008523 229
92 3300006881 Ga0068865_100000096 Ga0068865_10000009628 229
93 3300009093 Ga0105240_10011380 Ga0105240_1001138015 229
94 3300009093 Ga0105240_10025540 Ga0105240_100255404 229
95 3300009093 Ga0105240_10084095 Ga0105240_100840953 229
96 3300009148 Ga0105243_10106119 Ga0105243_101061194 229
97 3300009174 Ga0105241_10001784 Ga0105241_100017844 229
98 3300009174 Ga0105241_10120215 Ga0105241_101202152 229
99 3300009174 Ga0105241_10145871 Ga0105241_101458712 229
100 3300009174 Ga0105241_10388410 Ga0105241_103884101 229
101 3300009176 Ga0105242_10060350 Ga0105242_100603502 229
102 3300009545 Ga0105237_10017720 Ga0105237_100177208 229
103 3300009545 Ga0105237_10038690 Ga0105237_100386904 229
104 3300009545 Ga0105237_10089528 Ga0105237_100895283 229
105 3300009545 Ga0105237_10144634 Ga0105237_101446342 229
106 3300009545 Ga0105237_10170309 Ga0105237_101703092 229
107 3300009551 Ga0105238_10001721 Ga0105238_100017219 229
108 3300009551 Ga0105238_10108134 Ga0105238_101081343 229
109 3300009553 Ga0105249_10231898 Ga0105249_102318982 229
110 3300010375 Ga0105239_10000645 Ga0105239_1000064542 229
111 3300010375 Ga0105239_10002115 Ga0105239_1000211517 229
112 3300010375 Ga0105239_10004892 Ga0105239_100048926 229
113 3300010375 Ga0105239_10204385 Ga0105239_102043852 229
114 3300011119 Ga0105246_10047515 Ga0105246_100475154 229
115 3300011119 Ga0105246_10203631 Ga0105246_102036311 229
116 3300011119 Ga0105246_10794329 Ga0105246_107943291 229
117 3300013102 Ga0157371_10307655 Ga0157371_103076552 229
118 3300013104 Ga0157370_10178863 Ga0157370_101788633 229
119 3300013105 Ga0157369_10067509 Ga0157369_100675094 229
120 3300013296 Ga0157374_10000536 Ga0157374_100005364 229
121 3300013297 Ga0157378_10430369 Ga0157378_104303692 229
122 3300013306 Ga0163162_10000005 Ga0163162_10000005199 229
123 3300013306 Ga0163162_10002585 Ga0163162_100025851 229
124 3300013307 Ga0157372_10003357 Ga0157372_100033578 229
125 3300013307 Ga0157372_10081116 Ga0157372_100811162 229
126 3300013307 Ga0157372_10248584 Ga0157372_102485843 229
127 3300013308 Ga0157375_10007860 Ga0157375_100078607 229
128 3300013308 Ga0157375_10116269 Ga0157375_101162692 229
129 3300014745 Ga0157377_10028006 Ga0157377_100280063 229
130 3300017792 Ga0163161_10000783 Ga0163161_1000078319 229
131 3300025231 Ga0207427_100072 Ga0207427_10007254 229
132 3300025233 Ga0209437_100026 Ga0209437_100026288 229
133 3300025233 Ga0209437_100102 Ga0209437_100102113 229
134 3300025261 Ga0209233_1000111 Ga0209233_1000111182 229
135 3300025904 Ga0207647_10000392 Ga0207647_100003928 229
136 3300025907 Ga0207645_10000479 Ga0207645_1000047919 229
137 3300025909 Ga0207705_10456601 Ga0207705_104566012 229
138 3300025911 Ga0207654_10002790 Ga0207654_100027904 229
139 3300025911 Ga0207654_10016039 Ga0207654_100160392 229
140 3300025913 Ga0207695_10009990 Ga0207695_100099908 229
141 3300025913 Ga0207695_10016701 Ga0207695_1001670110 229
142 3300025913 Ga0207695_10117440 Ga0207695_101174402 229
143 3300025914 Ga0207671_10003272 Ga0207671_100032729 229
144 3300025914 Ga0207671_10005410 Ga0207671_100054102 229
145 3300025914 Ga0207671_10022141 Ga0207671_100221414 229
146 3300025914 Ga0207671_10022520 Ga0207671_100225203 229
147 3300025914 Ga0207671_10158220 Ga0207671_101582202 229
148 3300025914 Ga0207671_10203840 Ga0207671_102038402 229
149 3300025919 Ga0207657_10050302 Ga0207657_100503024 229
150 3300025924 Ga0207694_10061928 Ga0207694_100619282 229
151 3300025924 Ga0207694_10356701 Ga0207694_103567011 229
152 3300025927 Ga0207687_10111690 Ga0207687_101116902 229
153 3300025931 Ga0207644_10038414 Ga0207644_100384144 229
154 3300025932 Ga0207690_10067118 Ga0207690_100671182 229
155 3300025933 Ga0207706_10000738 Ga0207706_1000073824 229
156 3300025934 Ga0207686_10042856 Ga0207686_100428562 229
157 3300025937 Ga0207669_10238525 Ga0207669_102385252 229
158 3300025938 Ga0207704_10000511 Ga0207704_100005114 229
159 3300025941 Ga0207711_10796351 Ga0207711_107963511 229
160 3300025949 Ga0207667_10115223 Ga0207667_101152231 229
161 3300025949 Ga0207667_10215647 Ga0207667_102156472 229
162 3300025949 Ga0207667_10262516 Ga0207667_102625162 229
163 3300025949 Ga0207667_10593006 Ga0207667_105930062 229
164 3300026023 Ga0207677_10014530 Ga0207677_100145304 229
165 3300026023 Ga0207677_10036746 Ga0207677_100367464 229
166 3300026041 Ga0207639_10165319 Ga0207639_101653192 229
167 3300026078 Ga0207702_10120480 Ga0207702_101204802 229
168 3300026078 Ga0207702_10133626 Ga0207702_101336262 229
169 3300026089 Ga0207648_10046802 Ga0207648_100468024 229
170 3300026121 Ga0207683_10005145 Ga0207683_100051456 229
171 3300028379 Ga0268266_10000185 Ga0268266_1000018567 229
172 3300028786 Ga0307517_10001656 Ga0307517_1000165637 229
173 3300028794 Ga0307515_10000676 Ga0307515_1000067621 229
174 3300028794 Ga0307515_10004229 Ga0307515_1000422910 229
175 3300028800 Ga0265338_10034526 Ga0265338_100345266 229
176 3300032004 Ga0307414_10113529 Ga0307414_101135292 229
177 3300033179 Ga0307507_10000099 Ga0307507_1000009934 229
178 3300037312 Ga0395899_0002988 Ga0395899_0002988_9796_10506 229
179 3300037418 Ga0395900_0000139 Ga0395900_0000139_32221_32937 229
180 3300037418 Ga0395900_0001986 Ga0395900_0001986_4329_5039 229
181 3300037466 Ga0395898_0008891 Ga0395898_0008891_9450_10160 229
182 3300037471 Ga0395905_0001448 Ga0395905_0001448_19073_19783 229
183 3300038443 Ga0395901_0001552 Ga0395901_0001552_16614_17324 229
184 3300039447 Ga0436361_1030299 Ga0436361_1030299_3060_3770 229
185 3300042005 Ga0439448_0017711 Ga0439448_0017711_290_1000 229
186 3300046459 Ga0495629_0268123 Ga0495629_0268123_54_785 229
187 3300046460 Ga0495638_0110795 Ga0495638_0110795_385_1107 229
188 3300046471 Ga0495650_0000081 Ga0495650_0000081_210142_210864 229
189 3300046492 Ga0495585_0000036 Ga0495585_0000036_113285_114007 229
190 3300046492 Ga0495585_0000170 Ga0495585_0000170_42670_43401 229
191 3300046500 Ga0495596_0105451 Ga0495596_0105451_259_996 229
192 3300046506 Ga0495583_0021826 Ga0495583_0021826_977_1699 229
193 3300046507 Ga0495606_0000034 Ga0495606_0000034_224597_225319 229
194 3300046507 Ga0495606_0067315 Ga0495606_0067315_191_913 229
195 3300046507 Ga0495606_0299437 Ga0495606_0299437_31_753 229
196 3300046512 Ga0495610_0004440 Ga0495610_0004440_103_825 229
197 3300046513 Ga0495616_0006681 Ga0495616_0006681_4583_5305 229
198 3300046513 Ga0495616_0032909 Ga0495616_0032909_1146_1868 229
199 3300046518 Ga0495631_0022164 Ga0495631_0022164_788_1525 229
200 3300046518 Ga0495631_0141514 Ga0495631_0141514_239_961 229
201 3300046519 Ga0495632_0055420 Ga0495632_0055420_1067_1804 229
202 3300046524 Ga0495648_0006447 Ga0495648_0006447_3734_4465 229
203 3300046538 Ga0495609_0008496 Ga0495609_0008496_3410_4144 229
204 3300046538 Ga0495609_0030451 Ga0495609_0030451_1316_2047 229
205 3300046557 Ga0495622_0033983 Ga0495622_0033983_1004_1735 229
206 3300046558 Ga0495633_0000006 Ga0495633_0000006_170685_171386 229
207 3300046558 Ga0495633_0020622 Ga0495633_0020622_1122_1844 229
208 3300046616 Ga0495668_0000011 Ga0495668_0000011_32922_33623 229
209 3300046660 Ga0495625_0000049 Ga0495625_0000049_154112_154834 229
210 3300046660 Ga0495625_0000344 Ga0495625_0000344_19413_20114 229
211 3300046660 Ga0495625_0004622 Ga0495625_0004622_11079_11810 229
212 3300046660 Ga0495625_0033997 Ga0495625_0033997_2781_3509 229
213 3300046660 Ga0495625_0054507 Ga0495625_0054507_1098_1820 229
214 3300046660 Ga0495625_0070269 Ga0495625_0070269_992_1714 229
215 3300046665 Ga0495661_0001086 Ga0495661_0001086_8252_8977 229
216 3300046665 Ga0495661_0005250 Ga0495661_0005250_2558_3280 229
217 3300046665 Ga0495661_0186299 Ga0495661_0186299_256_981 229
218 3300046683 Ga0495658_0097338 Ga0495658_0097338_979_1707 229
219 3300046694 Ga0495649_0000014 Ga0495649_0000014_42224_42946 229
220 3300046809 Ga0495600_0103502 Ga0495600_0103502_875_1606 229
221 3300046810 Ga0495660_0004617 Ga0495660_0004617_3641_4363 229
222 3300047317 Ga0495604_0379129 Ga0495604_0379129_163_882 229
223 3300047323 Ga0495683_0063409 Ga0495683_0063409_822_1544 229
224 3300047443 Ga0495687_000249 Ga0495687_000249_25129_25851 229
225 3300047443 Ga0495687_002369 Ga0495687_002369_1233_1943 229
226 3300047472 Ga0495686_0000697 Ga0495686_0000697_20911_21633 229
227 3300048089 Ga0495614_0014670 Ga0495614_0014670_1567_2268 229
228 3300049459 Ga0495678_004589 Ga0495678_004589_4652_5374 229
229 3300049460 Ga0495682_0026282 Ga0495682_0026282_890_1621 229
230 3300050493 nmdc:mga0k408_3582_c1 nmdc:mga0k408_3582_c1_4702_5403 229
231 3300053080 Ga0500635_0003035 Ga0500635_0003035_2106_2825 229
232 3300053122 Ga0500608_097648 Ga0500608_097648_208_909 229
233 3300053123 Ga0500614_029429 Ga0500614_029429_176_907 229
234 3300053125 Ga0500618_000016 Ga0500618_000016_56738_57466 229
235 3300053125 Ga0500618_030133 Ga0500618_030133_332_1054 229
236 3300053157 Ga0500624_000243 Ga0500624_000243_18356_19078 229
237 3300001979 JGI24740J21852_10024599 JGI24740J21852_100245992 230
238 3300005289 Ga0065704_10090427 Ga0065704_100904273 230
239 3300005455 Ga0070663_100008132 Ga0070663_1000081325 230
240 3300013308 Ga0157375_10204884 Ga0157375_102048843 230
241 3300014497 Ga0182008_10002603 Ga0182008_100026037 230
242 3300014497 Ga0182008_10012183 Ga0182008_100121833 230
243 3300014497 Ga0182008_10024604 Ga0182008_100246043 230
244 3300015262 Ga0182007_10007256 Ga0182007_100072563 230
245 3300015262 Ga0182007_10010138 Ga0182007_100101383 230
246 3300026067 Ga0207678_10026689 Ga0207678_100266895 230
247 3300028794 Ga0307515_10168140 Ga0307515_101681402 230
248 3300032004 Ga0307414_10120727 Ga0307414_101207272 230
249 3300037312 Ga0395899_0000591 Ga0395899_0000591_8362_9081 230
250 iso_pu_bacteria 2902048731 2902050346 230
251 3300009545 Ga0105237_10002031 Ga0105237_1000203115 231
252 3300013104 Ga0157370_10000303 Ga0157370_1000030318 231
253 3300013296 Ga0157374_10132988 Ga0157374_101329882 231
254 3300014497 Ga0182008_10000869 Ga0182008_1000086918 231
255 3300015261 Ga0182006_1004826 Ga0182006_10048264 231
256 3300017792 Ga0163161_10000406 Ga0163161_1000040627 231
257 3300025250 Ga0209026_1001399 Ga0209026_100139911 231
258 3300025914 Ga0207671_10003398 Ga0207671_100033985 231
259 3300037312 Ga0395899_0014201 Ga0395899_0014201_1884_2606 231
260 3300037418 Ga0395900_0014739 Ga0395900_0014739_3278_4000 231
261 3300037471 Ga0395905_0000169 Ga0395905_0000169_22412_23134 231
262 3300038443 Ga0395901_0017322 Ga0395901_0017322_825_1547 231
263 3300048925 Ga0496122_0004574 Ga0496122_0004574_6336_7031 231
264 3300048926 Ga0496123_0003497 Ga0496123_0003497_7834_8529 231
265 iso_pu_bacteria 2585427687 2586211153 231
266 iso_pu_bacteria 2738541302 2738854521 231
267 iso_pu_bacteria 2739367651 2739588081 231
268 iso_pu_bacteria 2739367656 2739616177 231
269 iso_pu_bacteria 2739367663 2739646831 231
270 iso_pu_bacteria 2818991437 2819545971 231
271 iso_pu_bacteria 2842722452 2842724129 231
272 iso_pu_bacteria 2842909656 2842912141 231
273 iso_pu_bacteria 2857627736 2857631274 231
274 iso_pu_bacteria 2904445276 2904446224 231
275 iso_pu_bacteria 2954016120 2954021504 231
276 3300002067 JGI24735J21928_10056999 JGI24735J21928_100569991 232
277 3300044684 Ga0466966_0018404 Ga0466966_0018404_1778_2506 232
278 3300045836 Ga0466958_0166597 Ga0466958_0166597_498_1226 232
279 iso_pu_bacteria 2895498888 2895503467 232
280 3300013307 Ga0157372_10005922 Ga0157372_100059223 233
281 3300020077 Ga0206351_10986752 Ga0206351_109867522 233
282 3300031548 Ga0307408_100001737 Ga0307408_10000173710 233
283 3300031911 Ga0307412_10011913 Ga0307412_100119134 233
284 3300031995 Ga0307409_100237713 Ga0307409_1002377132 233
285 3300032002 Ga0307416_100145940 Ga0307416_1001459402 233
286 3300032002 Ga0307416_100943709 Ga0307416_1009437091 233
287 3300032004 Ga0307414_10000780 Ga0307414_100007803 233
288 3300003320 rootH2_10015381 rootH2_1001538118 234
289 3300003323 rootH1_10209256 rootH1_102092562 234
290 3300003323 rootH1_10245574 rootH1_102455743 234
291 3300009093 Ga0105240_10001259 Ga0105240_1000125914 234
292 3300009093 Ga0105240_10454556 Ga0105240_104545562 234
293 3300009174 Ga0105241_10004818 Ga0105241_1000481810 234
294 3300009545 Ga0105237_10011689 Ga0105237_100116897 234
295 3300009551 Ga0105238_10071970 Ga0105238_100719702 234
296 3300009551 Ga0105238_10378580 Ga0105238_103785802 234
297 3300010375 Ga0105239_10000011 Ga0105239_10000011313 234
298 3300010375 Ga0105239_10000955 Ga0105239_1000095532 234
299 3300013104 Ga0157370_10023390 Ga0157370_100233902 234
300 3300025913 Ga0207695_10000183 Ga0207695_10000183137 234
301 3300025914 Ga0207671_10000477 Ga0207671_1000047734 234
302 3300025924 Ga0207694_10425991 Ga0207694_104259912 234
303 3300031911 Ga0307412_10403974 Ga0307412_104039741 234
304 3300033180 Ga0307510_10003549 Ga0307510_100035496 234
305 3300037312 Ga0395899_0000177 Ga0395899_0000177_28679_29422 234
306 3300041452 Ga0451793_1746469 Ga0451793_1746469_266_994 234
307 3300053080 Ga0500635_0001631 Ga0500635_0001631_4618_5361 234
308 3300002773 JGI25152J39213_1000537 JGI25152J39213_10005379 235
309 3300002774 JGI25150J39212_1000001 JGI25150J39212_100000133 235
310 3300003187 JGI25151J46595_10000001 JGI25151J46595_10000001759 235
311 3300003215 JGI25153J46596_10000001 JGI25153J46596_10000001648 235
312 3300003781 Ga0055536_1000004 Ga0055536_1000004240 235
313 3300003791 Ga0055530_10001168 Ga0055530_100011683 235
314 3300005288 Ga0065714_10064556 Ga0065714_100645567 235
315 3300005288 Ga0065714_10115290 Ga0065714_101152901 235
316 3300005329 Ga0070683_100031421 Ga0070683_1000314213 235
317 3300005339 Ga0070660_100097566 Ga0070660_1000975663 235
318 3300005366 Ga0070659_100003773 Ga0070659_1000037737 235
319 3300005535 Ga0070684_100439335 Ga0070684_1004393352 235
320 3300005563 Ga0068855_100595047 Ga0068855_1005950472 235
321 3300005614 Ga0068856_100135531 Ga0068856_1001355312 235
322 3300005616 Ga0068852_100773122 Ga0068852_1007731221 235
323 3300013100 Ga0157373_10000050 Ga0157373_1000005088 235
324 3300013100 Ga0157373_10010960 Ga0157373_100109605 235
325 3300013102 Ga0157371_10000041 Ga0157371_10000041132 235
326 3300013104 Ga0157370_10013668 Ga0157370_100136682 235
327 3300013104 Ga0157370_10048714 Ga0157370_100487142 235
328 3300013104 Ga0157370_10181196 Ga0157370_101811963 235
329 3300013104 Ga0157370_10506421 Ga0157370_105064212 235
330 3300013105 Ga0157369_10000016 Ga0157369_1000001691 235
331 3300013306 Ga0163162_10000165 Ga0163162_1000016535 235
332 3300014497 Ga0182008_10000703 Ga0182008_1000070314 235
333 3300015261 Ga0182006_1000453 Ga0182006_10004532 235
334 3300015261 Ga0182006_1046626 Ga0182006_10466262 235
335 3300015262 Ga0182007_10000002 Ga0182007_10000002290 235
336 3300015682 Ga0183373_1004 Ga0183373_1004183 235
337 3300017792 Ga0163161_10000212 Ga0163161_100002126 235
338 3300017792 Ga0163161_10001167 Ga0163161_1000116718 235
339 3300017792 Ga0163161_10028770 Ga0163161_100287703 235
340 3300025245 Ga0207425_1000002 Ga0207425_10000021121 235
341 3300025250 Ga0209026_1000287 Ga0209026_100028741 235
342 3300025258 Ga0209129_1000002 Ga0209129_10000021121 235
343 3300025292 Ga0209676_1000009 Ga0209676_1000009314 235
344 3300025294 Ga0209025_1000004 Ga0209025_100000471 235
345 3300025297 Ga0209758_1000006 Ga0209758_100000671 235
346 3300025298 Ga0209050_1000048 Ga0209050_1000048109 235
347 3300025919 Ga0207657_10105732 Ga0207657_101057322 235
348 3300025932 Ga0207690_10002626 Ga0207690_100026267 235
349 3300026142 Ga0207698_10654731 Ga0207698_106547312 235
350 3300031731 Ga0307405_10000006 Ga0307405_10000006210 235
351 3300031903 Ga0307407_10000003 Ga0307407_1000000323 235
352 3300032002 Ga0307416_100000002 Ga0307416_100000002271 235
353 3300046512 Ga0495610_0000785 Ga0495610_0000785_23903_24634 235
354 3300046520 Ga0495637_0007951 Ga0495637_0007951_2797_3528 235
355 3300046558 Ga0495633_0040658 Ga0495633_0040658_643_1368 235
356 3300053161 Ga0500634_0114162 Ga0500634_0114162_452_1183 235
357 iso_pu_bacteria 2849281842 2849282445 235
358 3300001990 JGI24737J22298_10001233 JGI24737J22298_100012332 236
359 3300005366 Ga0070659_100052690 Ga0070659_1000526902 236
360 3300013100 Ga0157373_10003753 Ga0157373_100037532 236
361 3300013102 Ga0157371_10000164 Ga0157371_1000016437 236
362 3300013105 Ga0157369_10298908 Ga0157369_102989081 236
363 3300013307 Ga0157372_10000249 Ga0157372_100002493 236
364 3300025261 Ga0209233_1002070 Ga0209233_10020703 236
365 3300025261 Ga0209233_1003596 Ga0209233_10035962 236
366 3300025904 Ga0207647_10001469 Ga0207647_1000146914 236
367 3300025932 Ga0207690_10011768 Ga0207690_100117685 236
368 3300031852 Ga0307410_10322600 Ga0307410_103226002 236
369 3300032004 Ga0307414_10010163 Ga0307414_100101633 236
370 3300032005 Ga0307411_10118768 Ga0307411_101187682 236
371 iso_pu_bacteria 2738543023 2739305264 236
372 3300015261 Ga0182006_1000295 Ga0182006_100029512 237
373 iso_pu_bacteria 2738541284 2738764230 237
374 iso_pu_bacteria 2775506987 2776611948 237
375 iso_pu_bacteria 2919186247 2919190531 237
376 iso_pu_bacteria 2939664404 2939668812 237
377 3300013307 Ga0157372_10000042 Ga0157372_1000004266 238
378 3300028794 Ga0307515_10036275 Ga0307515_100362756 238
379 3300046507 Ga0495606_0006808 Ga0495606_0006808_1101_1922 239
380 3300005288 Ga0065714_10086839 Ga0065714_100868392 240
381 3300005288 Ga0065714_10112429 Ga0065714_101124292 240
382 3300013100 Ga0157373_10040360 Ga0157373_100403602 240
383 3300032004 Ga0307414_10001658 Ga0307414_100016583 240
384 2162886007 SwRhRL2b_contig_2422272 SwRhRL2b_0806.00007030 241
385 3300003323 rootH1_10388377 rootH1_103883772 241
386 3300005288 Ga0065714_10002656 Ga0065714_100026564 241
387 3300005288 Ga0065714_10002719 Ga0065714_100027198 241
388 3300005288 Ga0065714_10006923 Ga0065714_100069234 241
389 3300005288 Ga0065714_10127195 Ga0065714_101271952 241
390 3300005289 Ga0065704_10070251 Ga0065704_1007025114 241
391 3300005289 Ga0065704_10102266 Ga0065704_101022663 241
392 3300013100 Ga0157373_10000487 Ga0157373_1000048721 241
393 3300013102 Ga0157371_10000486 Ga0157371_1000048613 241
394 3300013102 Ga0157371_10001175 Ga0157371_1000117514 241
395 3300013102 Ga0157371_10023476 Ga0157371_100234762 241
396 3300013104 Ga0157370_10010121 Ga0157370_100101216 241
397 3300013104 Ga0157370_10042921 Ga0157370_100429213 241
398 3300013104 Ga0157370_10056727 Ga0157370_100567274 241
399 3300013104 Ga0157370_10566259 Ga0157370_105662592 241
400 3300013105 Ga0157369_10000494 Ga0157369_1000049419 241
401 3300013105 Ga0157369_10038579 Ga0157369_100385792 241
402 3300014497 Ga0182008_10000014 Ga0182008_10000014189 241
403 3300015261 Ga0182006_1013744 Ga0182006_10137443 241
404 3300015261 Ga0182006_1017387 Ga0182006_10173872 241
405 3300031911 Ga0307412_10000043 Ga0307412_1000004321 241
406 3300032004 Ga0307414_10003178 Ga0307414_100031785 241
407 3300046512 Ga0495610_0003232 Ga0495610_0003232_9456_10214 241
408 3300049758 Ga0501241_003520 Ga0501241_003520_344_1069 241

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF01509

TruB_N

TruB family pseudouridylate synthase (N terminal domain)

31

189

0.96

PF16198

TruB_C_2

tRNA pseudouridylate synthase B C-terminal domain

190

234

0.92

Structural Annotation

Top 5 Hits

ID Description Score Start End
1ze1-assembly4.cif.gz_D conformational change of pseudouridine 55 synthase upon its association with rna substrate 0.946 22 230
1zl3-assembly1.cif.gz_A coupling of active site motions and rna binding 0.9348 22 240
3lwr-assembly1.cif.gz_A structure of h/aca rnp bound to a substrate rna containing 4su 0.924 19 241
1sgv-assembly1.cif.gz_A structure of trna psi55 pseudouridine synthase (trub) 0.9202 22 234
1k8w-assembly1.cif.gz_A crystal structure of the e. coli pseudouridine synthase trub bound to a t stem-loop rna 0.9123 22 240
ID Description Score Start End Superfamily
af_Q8I715_322_559_3.30.2350.10 Alpha Beta;2-Layer Sandwich;Pseudouridine synthase;Pseudouridine synthase 0.9553 18 231 3.30.2350.10
1ze1D01 Alpha Beta;2-Layer Sandwich;Pseudouridine synthase;Pseudouridine synthase 0.946 22 230 3.30.2350.10
af_Q57612_45_223_3.30.2350.10 Alpha Beta;2-Layer Sandwich;Pseudouridine synthase;Pseudouridine synthase 0.9381 23 236 3.30.2350.10
af_P9WHP7_7_227_3.30.2350.10 Alpha Beta;2-Layer Sandwich;Pseudouridine synthase;Pseudouridine synthase 0.9331 23 234 3.30.2350.10
af_Q0WVR7_318_539_3.30.2350.10 Alpha Beta;2-Layer Sandwich;Pseudouridine synthase;Pseudouridine synthase 0.9307 22 241 3.30.2350.10
ID Description Score Start End GO Terms
AF-A0A553AK57-F1-model_v4 tRNA pseudouridine synthase B (EC 5.4.99.25) (tRNA pseudouridine(55) synthase) (Psi55 synthase) (tRNA pseudouridylate synthase) (tRNA-uridine isomerase) 0.9778 18 236 GO:0003723
GO:0031119
GO:0160148
GO:1990481
AF-A0A4Q5YNL3-F1-model_v4 tRNA pseudouridine synthase B (EC 5.4.99.25) (tRNA pseudouridine(55) synthase) (Psi55 synthase) (tRNA pseudouridylate synthase) (tRNA-uridine isomerase) 0.9722 15 240 GO:0003723
GO:0031119
GO:0160148
GO:1990481
AF-A0A2E6QUM7-F1-model_v4 tRNA pseudouridine synthase B (EC 5.4.99.25) (tRNA pseudouridine(55) synthase) (Psi55 synthase) (tRNA pseudouridylate synthase) (tRNA-uridine isomerase) 0.97 19 234 GO:0003723
GO:0031119
GO:0160148
GO:1990481
AF-A0A6S6TGH1-F1-model_v4 tRNA pseudouridine synthase B (EC 5.4.99.25) (tRNA pseudouridine(55) synthase) (Psi55 synthase) (tRNA pseudouridylate synthase) (tRNA-uridine isomerase) 0.9691 15 239 GO:0003723
GO:0016829
GO:0031119
GO:0160148
GO:1990481
AF-A0A838FDH3-F1-model_v4 tRNA pseudouridine synthase B (EC 5.4.99.25) (tRNA pseudouridine(55) synthase) (Psi55 synthase) (tRNA pseudouridylate synthase) (tRNA-uridine isomerase) 0.9668 20 240 GO:0003723
GO:0009982
GO:0031119
GO:0140098
GO:1990481

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pLDDT pTM Quality
89.06 0.84 High
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Predicted Structure (AlphaFold2)

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