F445577

General Info

Members Datasets Scaffolds Average Seq Length
445 391 166 595

Family's Representative Sequence

Representative Sequence 3300046471|Ga0495650_0031835|Ga0495650_0031835_104_2101
Length 665
Sequence MDSRVKPEDDPKRDLGLPTNRACRIRRACVGLRGYRRPLIIFLRHDARATIGASQMENGSDDLMSPVEAADPIQRAFLNVERSASGNRWVSRLDQAGQNRALAMAQTHGMAELIARVLAGRGVGIDEAMAFLDPTIRGLMPDPHKLTDCEKAAERLLRAVRAGETVAIFGDYDVDGAASSALLYKFLRHFGVPAVIYIPDRIFEGYGPNPNAINQLIDNGAQLIVTVDCGSTSFESLDAARARNIDVVVIDHHQVGHELPHCHALVNPNREDDLSGQGHLCAAGVVFLVLVAALRLLRQSGDLRAGNIDLLGWLDIVALATVCDVVPLKGLNRAYVVKGLLAARHQSNPGLAALFRKAGLGGPVTPYHFGFLIGPRINAGGRIGDAALGSRLLTLEDANEAETIAEQLDELNRERQAMEAVMLKEAEAEALAEYGTGEGASVIVTAHDRWHPGIVGLIASRLKDAFRRPAFAIAFDSSGKGTGSGRSIAGFDMGRMVRAAVDEGLLVKGGGHAMAAGLTVERANLGRLRSFFAERADKQVAGLVADSVLKIDGALGAGGATVDLVDQLETAGPFGSGHPQPIFAIPGHRLRDSRLVGASHIKVTLEAQDGGRLEGIAFRAAETPLGDLLLGSRGANLHVAGTLGADHWQGSRRVQLRVMDAAKTF

Samples

Sample ID Description Type Environment
1 2509276021 Rhizobium leguminosarum bv. trifolii WSM597 Isolate Nodule
2 2510917022 Rhizobium sp. AP16 Isolate Rhizosphere
3 2510917028 Rhizobium sp. CF122 Isolate Rhizosphere
4 2511231052 Sinorhizobium meliloti AK58 Isolate Nodule
5 2512875026 Sinorhizobium medicae WSM1115 Isolate Nodule
6 2513237086 Sinorhizobium meliloti MVII-I Isolate Nodule
7 2513237088 Rhizobium mesoamericanum STM6155 Isolate Nodule
8 2513237089 Sinorhizobium medicae DI28 Isolate Nodule
9 2513237138 Rhizobium favelukesii OR191 Isolate Nodule
10 2513237146 Rhizobium mongolense USDA 1844 (Illumina) Isolate Nodule
11 2513237156 Sinorhizobium medicae WSM1369 Isolate Nodule
12 2513237160 Sinorhizobium medicae WSM244 Isolate Nodule
13 2516653046 Sinorhizobium meliloti BO21CC Isolate Nodule
14 2517487022 Sinorhizobium medicae WSM4191 Isolate Nodule
15 2524023209 Rhizobium leucaenae USDA 9039 Isolate Nodule
16 2534681796 Rhizobium grahamii CCGE 502 Isolate Nodule
17 2537561587 Agrobacterium tumefaciens Cherry 2E-2-2 Isolate Rhizosphere
18 2551306084 Sinorhizobium meliloti 5A14 Isolate Nodule
19 2551306085 Sinorhizobium meliloti AE608H Isolate Nodule
20 2554235003 Agrobacterium tumefaciens WRT31 Isolate Rhizosphere
21 2558860242 Agrobacterium fabacearum P4 Isolate Rhizosphere
22 2558860983 Allorhizobium undicola ATCC 700741 Isolate Rhizoplane
23 2582581283 Rhizobium sp. OK665 Isolate Rhizosphere
24 2582581306 Rhizobium sp. YR295 Isolate Rhizosphere
25 2582581307 Rhizobium sp. YR060 Isolate Rhizosphere
26 2582581308 Rhizobium sp. OK494 Isolate Rhizosphere
27 2582581315 Agrobacterium rhizogenes YR147 Isolate Rhizosphere
28 2582581316 Agrobacterium rhizogenes OK036 Isolate Rhizosphere
29 2582581865 Rhizobium sp. CF258 Isolate Rhizosphere
30 2582581866 Rhizobium sp. CF097 Isolate Rhizosphere
31 2582581867 Rhizobium sp. OV201 Isolate Rhizosphere
32 2585427527 Rhizobium lusitanum YR374 Isolate Rhizosphere
33 2585427530 Rhizobium tropici YR635 Isolate Rhizosphere
34 2585427531 Agrobacterium rhizogenes YR530 Isolate Rhizosphere
35 2585427590 Rhizobium sp. CF048 Isolate Rhizosphere
36 2585427608 Agrobacterium rhizogenes OV677 Isolate Rhizosphere
37 2585427609 Agrobacterium rhizogenes CF263 Isolate Rhizosphere
38 2585427633 Neorhizobium galegae bv. officinalis HAMBI 1141 Isolate Nodule
39 2585427634 Neorhizobium galegae bv. orientalis HAMBI 540 Isolate Nodule
40 2585428125 Agrobacterium rhizogenes CF262 Isolate Rhizosphere
41 2599185156 Rhizobium sp. NFR03 Isolate Rhizoplane
42 2599185170 Rhizobium mongolense USDA 1844 (PacBio) Isolate Nodule
43 2599185210 Rhizobium sp. NFACC06-2 Isolate Rhizoplane
44 2600255279 Rhizobium sp. NFIX01 Isolate Rhizoplane
45 2600255308 Rhizobium sp. NFIX02 Isolate Rhizoplane
46 2615840626 Rhizobium lusitanum P1-7 Isolate Nodule
47 2615840698 Rhizobium multihospitium HAMBI 2975 Isolate Nodule
48 2617270742 Rhizobium miluonense HAMBI 2971 Isolate Nodule
49 2643221558 Rhizobium sp. Root149 Isolate Unclassified
50 2643221568 Rhizobium sp. Root564 Isolate Unclassified
51 2643221582 Rhizobium sp. Root651 Isolate Unclassified
52 2643221607 Rhizobium sp. Root73 Isolate Unclassified
53 2643221636 Rhizobium sp. Root1204 Isolate Unclassified
54 2643221653 Rhizobium sp. Root1240 Isolate Unclassified
55 2643221686 Rhizobium sp. Root1334 Isolate Unclassified
56 2643221688 Rhizobium sp. Root482 Isolate Unclassified
57 2643221689 Rhizobium sp. Root483D2 Isolate Unclassified
58 2643221693 Rhizobium sp. Root491 Isolate Unclassified
59 2643221719 Rhizobium sp. Root274 Isolate Unclassified
60 2667528174 Rhizobium sp. NFR17 Isolate Rhizoplane
61 2690316117 Sinorhizobium fredii CCBAU 45436 Isolate Unclassified
62 2738541317 Rhizobium halophytocola DSM 21600 Isolate Unclassified
63 2757320392 Phyllobacterium leguminum ORS 1419 Isolate Nodule
64 2775507049 Rhizobium sp. ACO-34A Isolate Unclassified
65 2775507266 Rhizobium tropici PRF 81 Isolate Nodule
66 2791355082 Ensifer alkalisoli YIC4027 Isolate Nodule
67 2791355091 Sinorhizobium sp. FG01 Isolate Nodule
68 2791355092 Sinorhizobium sp. NG07B Isolate Nodule
69 2791355253 Rhizobium rhizosphaerae RD15 Isolate Rhizosphere
70 2802428858 Sinorhizobium medicae M14-1 Isolate Nodule
71 2802428859 Sinorhizobium medicae SF3.41 Isolate Nodule
72 2802428860 Sinorhizobium medicae M19-1 Isolate Nodule
73 2802428861 Sinorhizobium medicae USDA1037 Isolate Nodule
74 2802428862 Sinorhizobium medicae M7-4 Isolate Nodule
75 2802428863 Sinorhizobium medicae M26-2 Isolate Nodule
76 2808606387 Rhizobium sp. SJZ105 Isolate Rhizosphere
77 2818991272 Rhizobium sp. SLBN-4 Isolate Unclassified
78 2818991439 Agrobacterium tumefaciens 1187 Isolate Unclassified
79 2818991448 Rhizobium miluonense 1234 Isolate Unclassified
80 2818991453 Rhizobium lusitanum 1158 Isolate Unclassified
81 2818991461 Neorhizobium alkalisoli 1225 Isolate Unclassified
82 2838029111 Rhizobium tropici SEMIA 4079 Isolate Nodule
83 2838035591 Rhizobium mongolense SEMIA 4087 Isolate Nodule
84 2838675328 Agrobacterium radiobacter SEMIA 410 Isolate Nodule
85 2838714209 Agrobacterium radiobacter SEMIA 435 Isolate Nodule
86 2838719591 Agrobacterium radiobacter SEMIA 436 Isolate Nodule
87 2838724970 Agrobacterium radiobacter SEMIA 437 Isolate Nodule
88 2841846520 Agrobacterium radiobacter SEMIA 440 Isolate Nodule
89 2841859092 Agrobacterium radiobacter SEMIA 4026 Isolate Nodule
90 2841864319 Rhizobium leguminosarum SEMIA 4052 Isolate Nodule
91 2842124991 Agrobacterium radiobacter SEMIA 434 Isolate Nodule
92 2842130223 Agrobacterium radiobacter SEMIA 441 Isolate Nodule
93 2842152218 Agrobacterium radiobacter SEMIA 457 Isolate Nodule
94 2842170452 Agrobacterium radiobacter SEMIA 461 Isolate Nodule
95 2842175837 Agrobacterium radiobacter SEMIA 462 Isolate Nodule
96 2842187318 Agrobacterium radiobacter SEMIA 464 Isolate Nodule
97 2842211629 Agrobacterium radiobacter SEMIA 472 Isolate Nodule
98 2842224351 Agrobacterium radiobacter SEMIA 480 Isolate Nodule
99 2842298080 Rhizobium leucaenae SEMIA 492 Isolate Nodule
100 2842357229 Rhizobium leucaenae SEMIA 4015 Isolate Nodule
101 2842475841 Rhizobium tropici SEMIA 4059 Isolate Nodule
102 2842482326 Rhizobium lusitanum SEMIA 4060 Isolate Nodule
103 2842502639 Rhizobium tropici SEMIA 4063 Isolate Nodule
104 2842509118 Rhizobium paranaense SEMIA 4064 Isolate Nodule
105 2842515876 Agrobacterium radiobacter SEMIA 4072 Isolate Nodule
106 2842922631 Pararhizobium sp. R-72066 Isolate Unclassified
107 2847417321 Sinorhizobium fredii CCBAU 45436 Isolate Unclassified
108 2848992105 Sinorhizobium fredii CCBAU 25509 Isolate Unclassified
109 2852387548 Rhizobium jaguaris CCGE525 Isolate Unclassified
110 2854896431 Neorhizobium alkalisoli DSM 21826 Isolate Unclassified
111 2855825444 Sinorhizobium meliloti CXM1-105 Isolate Nodule
112 2855872281 Sinorhizobium fredii PCH1 Isolate Nodule
113 2891048133 Martelella lutilitoris GH2-6 Isolate Rhizosphere
114 2891373044 Shinella sp. AETb1-6 Isolate Rhizosphere
115 2899792073 Agrobacterium deltaense CNPSo 3391 Isolate Nodule
116 2899803654 Agrobacterium sp. a22-2 Isolate Unclassified
117 2899845264 Agrobacterium fabacearum CNPSo 675 Isolate Unclassified
118 2913295892 Sinorhizobium kostiensis DSM 13372 Isolate Nodule
119 2913308742 Rhizobium halophytocola DSM 21600 Isolate Unclassified
120 2915980308 Sinorhizobium medicae USDA1149 Isolate Nodule
121 2916014648 Sinorhizobium meliloti USDA1583 Isolate Nodule
122 2916021584 Sinorhizobium meliloti USDA1550 Isolate Nodule
123 2916028427 Sinorhizobium meliloti USDA1613 Isolate Nodule
124 2916035215 Sinorhizobium meliloti 3011 Isolate Nodule
125 2916055098 Sinorhizobium meliloti USDA1770 Isolate Nodule
126 2916061851 Sinorhizobium medicae USDA1638 Isolate Nodule
127 2919114240 Agrobacterium tumefaciens 1457 Isolate Rhizosphere
128 2919166419 Agrobacterium cavarae 2074 Isolate Unclassified
129 2919171160 Neorhizobium sp. 2083 Isolate Unclassified
130 2919408235 Rhizobium miluonense 3199 Isolate Unclassified
131 2921237296 Sinorhizobium meliloti USDA1508 Isolate Nodule
132 2921244191 Sinorhizobium meliloti 2119 Isolate Nodule
133 2921250672 Sinorhizobium medicae USDA1169 Isolate Nodule
134 2921263974 Sinorhizobium meliloti USDA1107 Isolate Nodule
135 2921282425 Sinorhizobium meliloti USDA1203 Isolate Nodule
136 2921289301 Sinorhizobium meliloti USDA1730 Isolate Nodule
137 2923556063 Rhizobium tibeticum 3740 Isolate Unclassified
138 2924144063 Sinorhizobium meliloti USDA1022 Isolate Nodule
139 2924150972 Sinorhizobium meliloti USDA1700 Isolate Nodule
140 2924165586 Sinorhizobium meliloti USDA1264 Isolate Nodule
141 2924179722 Sinorhizobium meliloti USDA1280 Isolate Nodule
142 2924186466 Sinorhizobium meliloti USDA1389 Isolate Nodule
143 2924193448 Sinorhizobium meliloti USDA1158 Isolate Nodule
144 2924200457 Sinorhizobium meliloti USDA1007 Isolate Nodule
145 2924207177 Sinorhizobium meliloti USDA1589 Isolate Nodule
146 2924221636 Sinorhizobium meliloti USDA1416 Isolate Nodule
147 2924228884 Sinorhizobium meliloti USDA1581 Isolate Nodule
148 2926754445 Agrobacterium radiobacter SLBN-94 Isolate Rhizosphere
149 2926760298 Agrobacterium tumefaciens SLBN-170 Isolate Rhizosphere
150 2929138655 Agrobacterium sp. R-72433 Hybrid assembly Isolate Unclassified
151 2933006813 Rhizobium sp. SEMIA 439 Isolate Unclassified
152 2933011516 Rhizobium sp. SEMIA 4032 Isolate Unclassified
153 2933594066 Agrobacterium fabrum 35/80 Isolate Nodule
154 2937002841 Sinorhizobium meliloti USDA1006 Isolate Nodule
155 2937009748 Sinorhizobium meliloti USDA1162 Isolate Nodule
156 2937016420 Sinorhizobium meliloti USDA1027 Isolate Nodule
157 2937029754 Sinorhizobium medicae USDA1624 Isolate Nodule
158 2937036028 Sinorhizobium medicae USDA1608 Isolate Nodule
159 2937042894 Sinorhizobium meliloti USDA1687 Isolate Nodule
160 2937056579 Sinorhizobium meliloti USDA1357 Isolate Nodule
161 2937063883 Sinorhizobium meliloti USDA1808 Isolate Nodule
162 2937071275 Sinorhizobium meliloti USDA1623 Isolate Nodule
163 2937078374 Sinorhizobium medicae USDA1004 Isolate Nodule
164 2937084907 Sinorhizobium medicae USDA1664 Isolate Nodule
165 2937113482 Sinorhizobium meliloti USDA1180 Isolate Nodule
166 2937119839 Sinorhizobium meliloti USDA1790 Isolate Nodule
167 2937126314 Sinorhizobium meliloti USDA1612 Isolate Nodule
168 2957375807 Sinorhizobium medicae USDA1632 Isolate Nodule
169 2957382221 Sinorhizobium meliloti USDA1919 Isolate Nodule
170 2957402308 Sinorhizobium meliloti USDA1794 Isolate Nodule
171 2957408893 Sinorhizobium meliloti USDA1163 Isolate Nodule
172 2957415311 Sinorhizobium meliloti USDA1724 Isolate Nodule
173 2957430029 Sinorhizobium meliloti USDA1590 Isolate Nodule
174 2957437181 Sinorhizobium medicae USDA1694 Isolate Nodule
175 2957450854 Sinorhizobium meliloti USDA1655 Isolate Nodule
176 2957457609 Sinorhizobium meliloti USDA1751 Isolate Nodule
177 2957464669 Sinorhizobium meliloti USDA1520 Isolate Nodule
178 2957471148 Sinorhizobium meliloti USDA1204 Isolate Nodule
179 2957478035 Sinorhizobium meliloti USDA1171 Isolate Nodule
180 2957484790 Sinorhizobium meliloti USDA1464 Isolate Nodule
181 2957498199 Sinorhizobium meliloti USDA1561 Isolate Nodule
182 2957505466 Sinorhizobium meliloti USDA1696 Isolate Nodule
183 2960584000 Sinorhizobium meliloti USDA1530 Isolate Nodule
184 2960591022 Sinorhizobium medicae USDA1066 Isolate Nodule
185 2960597568 Sinorhizobium meliloti 3085 Isolate Nodule
186 2960603979 Sinorhizobium meliloti USDA1580 Isolate Nodule
187 2960631154 Sinorhizobium medicae USDA1629 Isolate Nodule
188 2960637947 Sinorhizobium meliloti USDA1202 Isolate Nodule
189 2960645483 Sinorhizobium meliloti USDA1703 Isolate Nodule
190 2960652885 Sinorhizobium meliloti USDA1199 Isolate Nodule
191 2960667422 Sinorhizobium meliloti USDA1170 Isolate Nodule
192 2960680706 Sinorhizobium medicae USDA1150 Isolate Nodule
193 2960693952 Sinorhizobium medicae USDA1630 Isolate Nodule
194 2964607997 Sinorhizobium meliloti USDA1212 Isolate Nodule
195 2964621998 Sinorhizobium meliloti USDA1235 Isolate Nodule
196 2964628898 Sinorhizobium meliloti USDA1191 Isolate Nodule
197 2964636051 Sinorhizobium meliloti USDA1594 Isolate Nodule
198 2964643177 Sinorhizobium meliloti USDA1760 Isolate Nodule
199 2964663802 Sinorhizobium meliloti USDA1688 Isolate Nodule
200 2964670856 Sinorhizobium meliloti USDA1211 Isolate Nodule
201 2964678106 Sinorhizobium meliloti USDA1210 Isolate Nodule
202 2964685014 Sinorhizobium meliloti USDA1232 Isolate Nodule
203 2964691889 Sinorhizobium meliloti USDA1379 Isolate Nodule
204 2964698721 Sinorhizobium meliloti USDA1656 Isolate Nodule
205 2964705432 Sinorhizobium meliloti USDA1614 Isolate Nodule
206 2964712639 Sinorhizobium meliloti USDA1616 Isolate Nodule
207 2967671571 Sinorhizobium meliloti USDA1496 Isolate Nodule
208 2967686174 Sinorhizobium medicae USDA1641 Isolate Nodule
209 2967699805 Sinorhizobium meliloti USDA1695 Isolate Nodule
210 2967706974 Sinorhizobium meliloti USDA1206 Isolate Nodule
211 2967728569 Sinorhizobium medicae USDA1607 Isolate Nodule
212 2967742019 Sinorhizobium meliloti USDA1676 Isolate Nodule
213 2967748971 Sinorhizobium meliloti USDA1024A Isolate Nodule
214 2967769361 Sinorhizobium meliloti USDA1005 Isolate Nodule
215 2967775926 Sinorhizobium meliloti USDA1678 Isolate Nodule
216 2970026789 Sinorhizobium medicae USDA1611 Isolate Nodule
217 2970033650 Sinorhizobium meliloti USDA1565 Isolate Nodule
218 2970047711 Sinorhizobium meliloti USDA1793 Isolate Nodule
219 2970054988 Sinorhizobium meliloti USDA1031 Isolate Nodule
220 2970061556 Sinorhizobium meliloti USDA1810 Isolate Nodule
221 2970068827 Sinorhizobium meliloti USDA1227 Isolate Nodule
222 2970076120 Sinorhizobium meliloti USDA1706 Isolate Nodule
223 2970088815 Sinorhizobium meliloti USDA1819 Isolate Nodule
224 2970095765 Sinorhizobium meliloti USDA1225 Isolate Nodule
225 2970109326 Sinorhizobium meliloti USDA1186 Isolate Nodule
226 2970122695 Sinorhizobium medicae 3082 Isolate Nodule
227 2970136068 Sinorhizobium meliloti USDA1699 Isolate Nodule
228 2970143518 Sinorhizobium medicae USDA1652 Isolate Nodule
229 2970149975 Sinorhizobium meliloti USDA1215 Isolate Nodule
230 2970156795 Sinorhizobium meliloti USDA1491 Isolate Nodule
231 2970164137 Sinorhizobium meliloti USDA1018 Isolate Nodule
232 2970170962 Sinorhizobium meliloti USDA1571 Isolate Nodule
233 2970191845 Sinorhizobium meliloti USDA1187 Isolate Nodule
234 2977523885 Sinorhizobium meliloti USDA1777 Isolate Nodule
235 2977530762 Sinorhizobium medicae USDA1606 Isolate Nodule
236 2977537788 Sinorhizobium meliloti USDA1184 Isolate Nodule
237 2977544691 Sinorhizobium medicae USDA1631 Isolate Nodule
238 2977558990 Sinorhizobium meliloti USDA1222 Isolate Nodule
239 2977565890 Sinorhizobium meliloti USDA1617 Isolate Nodule
240 2977572785 Sinorhizobium meliloti USDA1767 Isolate Nodule
241 2978969890 Agrobacterium sp. SORGH_AS 787 Isolate Unclassified
242 2979089926 Agrobacterium sp. SORGH_AS 745 Isolate Unclassified
243 2979095461 Agrobacterium tumefaciens SORGH_AS 749 Isolate Unclassified
244 2979100975 Agrobacterium pusense SORGH_AS 755 Isolate Unclassified
245 2984509177 Agrobacterium pusense SORGH_AS260 Isolate Aerial Root
246 2984518228 Agrobacterium pusense SORGH_AS285 Isolate Aerial Root
247 2984587000 Agrobacterium larrymoorei SORGH_AS974 Isolate Aerial Root
248 2984601300 Rhizobium pusense SORGH_AS1083 Isolate Aerial Root
249 2989349275 Shinella kummerowiae CCBAU 25048 Isolate Unclassified
250 2989771324 Rhizobium rhizolycopersici DBTS2 Isolate Rhizosphere
251 2989776772 Rhizobium glycinendophyticum CL12 Isolate Unclassified
252 2996887358 Rhizobium sp. R711 Isolate Nodule
253 3002141150 Phyllobacterium sp. 628 Isolate Unclassified
254 3003930520 Sinorhizobium sp. BG8 Isolate Unclassified
255 3005416602 Rhizobium sp. P40RR-XXII Isolate Rhizosphere
256 3005452660 Rhizobium grahamii BG7 Isolate Unclassified
257 3300001979 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6 Metagenome Rhizosphere
258 3300002704 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mLB Metagenome Unclassified
259 3300002705 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mMS Metagenome Unclassified
260 3300002737 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mTSA Metagenome Endosphere
261 3300002738 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mTSA Metagenome Unclassified
262 3300002741 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mCL Metagenome Unclassified
263 3300003214 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mCL Metagenome Endosphere
264 3300003354 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMS Metagenome Endosphere
265 3300003374 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMF Metagenome Endosphere
266 3300003790 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMS_r2 Metagenome Endosphere
267 3300003856 Agave microbial communities from Guanajuato, Mexico - At.Am.rz Metagenome Rhizosphere
268 3300004625 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mMF_r2 Metagenome Endosphere
269 3300005331 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG Metagenome Rhizosphere
270 3300005347 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG Metagenome Rhizosphere
271 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
272 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
273 3300006038 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 Metagenome Endosphere
274 3300006195 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 Metagenome Endosphere
275 3300006946 Root nodule microbial communities of legume samples collected from California, USA - Medicago truncatula BG Metagenome Nodule
276 3300006948 Root nodule microbial communities of legume samples collected from California, USA - M. trunc garden sep15 Metagenome Nodule
277 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
278 3300009148 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG Metagenome Rhizosphere
279 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
280 3300009766 Root nodule microbial communities of legume samples collected from Mexico - Turtle bean Mexico white nodule Metagenome Nodule
281 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
282 3300013102 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG Metagenome Rhizosphere
283 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
284 3300015262 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-113_1 MetaG Metagenome Rhizosphere
285 3300021320 Root nodule microbial communities from cowpea collected in UCLA plant growth center, Los Angeles, California, USA - CNSS3 Metagenome Nodule
286 3300021321 Root nodule microbial communities from cowpea collected in UCLA plant growth center, Los Angeles, California, USA - CNSS1 Metagenome Nodule
287 3300021327 Root nodule microbial communities from cowpea collected in UCLA plant growth center, Los Angeles, California, USA - CNSS2 Metagenome Nodule
288 3300022739 Root nodule microbial communities from Medicago polymorpha collected in Santa Monica, California, United States - brown nodules Metagenome Nodule
289 3300022740 Root nodule microbial communities from Medicago polymorpha collected in Santa Monica, California, United States - pink nodules Metagenome Nodule
290 3300025206 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mLB (SPAdes) (version 2) Metagenome Unclassified
291 3300025233 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mTSA (SPAdes) (version 2) Metagenome Endosphere
292 3300025246 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mTSA (SPAdes) (version 2) Metagenome Unclassified
293 3300025250 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mCL (SPAdes) (version 2) Metagenome Unclassified
294 3300025253 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
295 3300025256 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mMS (SPAdes) (version 2) Metagenome Unclassified
296 3300025258 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMS (SPAdes) (version 3) Metagenome Endosphere
297 3300025261 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mCL (SPAdes) (version 2) Metagenome Endosphere
298 3300025273 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMS_r2 (SPAdes) (version 3) Metagenome Endosphere
299 3300025284 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mLB (SPAdes) (version 2) Metagenome Endosphere
300 3300025292 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mLB_r2 (SPAdes) (version 2) Metagenome Endosphere
301 3300025294 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mLB (SPAdes) (version 2) Metagenome Endosphere
302 3300025295 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMF_r2 (SPAdes) (version 3) Metagenome Endosphere
303 3300025297 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF (SPAdes) (version 2) Metagenome Endosphere
304 3300025298 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 (SPAdes) (version 2) Metagenome Endosphere
305 3300025299 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mCL_r2 (SPAdes) (version 3) Metagenome Endosphere
306 3300025302 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMS (SPAdes) (version 2) Metagenome Endosphere
307 3300025303 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mMS_r2 (SPAdes) (version 2) Metagenome Endosphere
308 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
309 3300025914 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
310 3300025925 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
311 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
312 3300027111 Root nodule microbial communities of legume samples collected from California, USA - Medicago truncatula BG (SPAdes) (version 2) Metagenome Nodule
313 3300027312 Agave microbial communities from Guanajuato, Mexico - At.Am.rz (SPAdes) (version 2) Metagenome Rhizosphere
314 3300027666 Root nodule microbial communities of legume samples collected from California, USA - M. trunc garden sep15 (SPAdes) (version 2) Metagenome Nodule
315 3300028794 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM Metagenome Unclassified
316 3300030500 Agave microbial communities from Guanajuato, Mexico - At.Am.rz (v2) (version 3) Metagenome Rhizosphere
317 3300031241 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-14-20 metaG Metagenome Rhizosphere
318 3300031548 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3 Metagenome Rhizosphere
319 3300031967 Medicago polymorpha root nodule microbial communities from Los Angeles, California, United States - elongated nodules Metagenome Nodule
320 3300033430 Medicago polymorpha root nodule microbial communities from Los Angeles, California, United States - small nodules Metagenome Nodule
321 3300033464 Medicago polymorpha root nodule microbial communities from Los Angeles, California, United States - branched nodules Metagenome Nodule
322 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
323 3300039438 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R1 v2 Metagenome Rhizosphere
324 3300039447 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2 v2 Metagenome Rhizosphere
325 3300039453 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R3 v2 Metagenome Rhizosphere
326 3300041404 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0216DE14Z070717_5272 Metagenome Rhizosphere
327 3300044694 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC3R Metagenome Rhizosphere
328 3300046454 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-198-CL2_38_5 rhizosphere Metagenome Rhizosphere
329 3300046460 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co3_31_37 rhizosphere Metagenome Rhizosphere
330 3300046471 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co3_9_34 rhizosphere Metagenome Rhizosphere
331 3300046476 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-905-CL1_32_20 rhizosphere Metagenome Rhizosphere
332 3300046507 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co2_62_14 rhizosphere Metagenome Rhizosphere
333 3300046674 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL3_93_10 rhizosphere Metagenome Rhizosphere
334 3300047470 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWA-24-3-Co1_3_5 rhizosphere Metagenome Rhizosphere
335 3300047472 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co2_54_22 rhizosphere Metagenome Rhizosphere
336 3300048903 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7v unlabeled Metagenome Rhizoplane
337 3300048904 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7w unlabeled Metagenome Rhizoplane
338 3300048905 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1c N15 Metagenome Rhizoplane
339 3300048908 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2d N15 Metagenome Rhizoplane
340 3300048916 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5d N15 Metagenome Rhizoplane
341 3300048917 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6c N15 Metagenome Rhizoplane
342 3300048919 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_7x unlabeled Metagenome Unclassified
343 3300048920 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1e N15 Metagenome Unclassified
344 3300048921 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1f N15 Metagenome Unclassified
345 3300048922 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2e N15 Metagenome Unclassified
346 3300048923 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2f N15 Metagenome Unclassified
347 3300048924 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_3e N15 Metagenome Unclassified
348 3300048925 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8x unlabeled Metagenome Unclassified
349 3300048926 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8y unlabeled Metagenome Unclassified
350 3300048927 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_4e N15 Metagenome Unclassified
351 3300048928 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_5e N15 Metagenome Unclassified
352 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
353 3300049570 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_03 Metagenome Rhizosphere
354 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
355 3300050491 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 re-annotation Metagenome Endosphere
356 3300050492 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 re-annotation Metagenome Endosphere
357 3300050493 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 re-annotation Metagenome Endosphere
358 3300053077 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL1_33_12 rhizosphere Metagenome Rhizosphere
359 3300053121 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL2_42_16 endosphere Metagenome Endosphere
360 3300053122 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL3_77_6 endosphere Metagenome Endosphere
361 3300053136 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL2_62_7 endosphere Metagenome Endosphere
362 3300053137 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-133-Co1_27_3 endosphere Metagenome Endosphere
363 3300053140 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL1_33_12 endosphere Metagenome Endosphere
364 3300053148 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-360-CL2_44_14 endosphere Metagenome Endosphere
365 3300053153 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 endosphere Metagenome Endosphere
366 3300053156 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 endosphere Metagenome Endosphere
367 3300053157 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-86-CL2_69_17 endosphere Metagenome Endosphere
368 3300053161 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co3_16_51 endosphere Metagenome Endosphere
369 648276728 Sinorhizobium meliloti BL225C Isolate Nodule
370 650716007 Agrobacterium fabacearum H13-3 Isolate Rhizosphere
371 8003570095 Agrobacterium rhizogenes GBBC3284 Isolate Unclassified
372 8003999396 Sinorhizobium medicae WSM1115 Isolate Nodule
373 8005246636 Rhizobium wuzhouense W44 Isolate Rhizosphere
374 8005258706 Rhizobium sp. R693 Isolate Nodule
375 8005314921 Rhizobium sp. P28RR-XV Isolate Rhizosphere
376 8005321885 Rhizobium sp. R72 Isolate Nodule
377 8005484373 Rhizobium tropici SARCC-755 Isolate Nodule
378 8005542996 Rhizobium grahamii CCGM3 Isolate Unclassified
379 8005645114 Rhizobium tropici IGFRI Rhizo-19 Isolate Rhizosphere
380 8005658619 Rhizobium terrae CC-HIH110 Isolate Unclassified
381 8005682033 Rhizobium dioscoreae S-93 Isolate Unclassified
382 8018150411 Rhizobium straminoryzae SM12 Isolate Rhizosphere
383 8024486573 Rhizobium tubonense CCBAU 85046 Isolate Nodule
384 8045864390 Aurantimonas endophytica KCTC 52296 Isolate Unclassified
385 8046767195 Rhizobium calliandrae CCGE524 Isolate Unclassified
386 8049293176 Ensifer alkalisoli YIC4027 Isolate Nodule
387 8054460903 Agrobacterium vaccinii B7.6 Isolate Unclassified
388 8054558443 Rhizobium alarense TRM95111 Isolate Nodule
389 8055431914 Allorhizobium sonneratiae BGMRC 0089 Isolate Unclassified
390 8056875544 Rhizobium halophilum TRM95001 Isolate Rhizosphere
391 8057575449 Rhizobium mayense CCGE526 Isolate Nodule

Type Distribution

Type Percentage (%)
Metagenomes 37.3
Metatranscriptomes 0
Isolates 62.7

Biome Distribution

Category Percentage (%)
Aerial Root 0.9
Bulb 0
Endosphere 11.24
Nodule 44.49
Rhizoplane 2.92
Rhizosphere 18.43
Stem 0
Stem Tuber 0
Unclassified 22.02

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 JGI24740J21852_10000001 3300001979 Bacteria 168537
2 JGI25155J39150_1000011 3300002704 Bacteria 207685
3 JGI25156J39149_1000027 3300002705 Bacteria 127396
4 JGI25162J39368_1000998 3300002737 Bacteria 17823
5 JGI25162J39368_1001138 3300002737 Bacteria 15963
6 JGI25154J39366_1000368 3300002738 Bacteria 25167
7 JGI25157J39369_1000010 3300002741 Bacteria 207685
8 JGI25165J46597_1003116 3300003214 Bacteria 4436
9 JGI25165J46597_1003987 3300003214 Bacteria 3367
10 JGI25165J46597_1006068 3300003214 Bacteria 2196
11 JGI25160J50197_1000004 3300003354 Bacteria 419797
12 JGI25161J50226_1000003 3300003374 Bacteria 413345
13 Ga0055528_1001812 3300003790 Bacteria 12218
14 Ga0058692_1004094 3300003856 Bacteria 4377
15 Ga0058692_1011526 3300003856 Bacteria 2132
16 Ga0055543_1000001 3300004625 Bacteria 419949
17 Ga0070670_100003630 3300005331 Bacteria 12852
18 Ga0070668_100039715 3300005347 Bacteria 3599
19 Ga0068855_100082697 3300005563 Bacteria 3721
20 Ga0068856_100137337 3300005614 Bacteria 2451
21 Ga0075365_10002422 3300006038 Bacteria 9143
22 Ga0075366_10058420 3300006195 Bacteria 2291
23 Ga0079104_1003382 3300006946 Bacteria 7483
24 Ga0099826_10031120 3300006948 Bacteria 3864
25 Ga0099826_10041874 3300006948 Bacteria 3172
26 Ga0105240_10000005 3300009093 Bacteria 702630
27 Ga0105243_10042788 3300009148 Bacteria 3547
28 Ga0105237_10007341 3300009545 Bacteria 12078
29 Ga0123342_1015595 3300009766 Bacteria 6860
30 Ga0105239_10019359 3300010375 Bacteria 7517
31 Ga0157371_10000015 3300013102 Bacteria 339838
32 Ga0157371_10016165 3300013102 Bacteria 5577
33 Ga0157370_10002129 3300013104 Bacteria 24176
34 Ga0157370_10002232 3300013104 Bacteria 23559
35 Ga0182007_10001551 3300015262 Bacteria 12238
36 Ga0214544_1000024 3300021320 Bacteria 163562
37 Ga0214542_1000015 3300021321 Bacteria 227912
38 Ga0214543_1000064 3300021327 Bacteria 126778
39 Ga0228711_1000007 3300022739 Bacteria 202413
40 Ga0228710_1000007 3300022740 Bacteria 189104
41 Ga0209435_100022 3300025206 Bacteria 207766
42 Ga0209437_100153 3300025233 Bacteria 154068
43 Ga0209437_100201 3300025233 Bacteria 119080
44 Ga0209646_1000078 3300025246 Bacteria 207766
45 Ga0209646_1004799 3300025246 Bacteria 2428
46 Ga0209026_1000065 3300025250 Bacteria 207766
47 Ga0209677_100355 3300025253 Bacteria 28569
48 Ga0209759_1000055 3300025256 Bacteria 207766
49 Ga0209129_1005729 3300025258 Bacteria 4270
50 Ga0209233_1000175 3300025261 Bacteria 144221
51 Ga0209233_1000248 3300025261 Bacteria 87812
52 Ga0209233_1000622 3300025261 Bacteria 17875
53 Ga0209673_1000068 3300025273 Bacteria 245891
54 Ga0209673_1014759 3300025273 Bacteria 3009
55 Ga0209673_1023220 3300025273 Bacteria 2119
56 Ga0209130_1000012 3300025284 Bacteria 421329
57 Ga0209130_1011396 3300025284 Bacteria 2383
58 Ga0209676_1004017 3300025292 Bacteria 8472
59 Ga0209025_1000094 3300025294 Bacteria 241080
60 Ga0209025_1000715 3300025294 Bacteria 56409
61 Ga0209025_1004041 3300025294 Bacteria 13137
62 Ga0209025_1005524 3300025294 Bacteria 10263
63 Ga0209025_1018523 3300025294 Bacteria 3936
64 Ga0209564_1025332 3300025295 Bacteria 1999
65 Ga0209758_1000155 3300025297 Bacteria 160455
66 Ga0209050_1005651 3300025298 Bacteria 7744
67 Ga0209256_1005660 3300025299 Bacteria 7038
68 Ga0209256_1011825 3300025299 Bacteria 3434
69 Ga0207426_1000010 3300025302 Bacteria 796003
70 Ga0209051_1004402 3300025303 Bacteria 8708
71 Ga0207695_10000011 3300025913 Bacteria 910221
72 Ga0207671_10000276 3300025914 Bacteria 76490
73 Ga0207650_10002700 3300025925 Bacteria 12262
74 Ga0207667_10036505 3300025949 Bacteria 5266
75 Ga0209281_1000128 3300027111 Bacteria 199265
76 Ga0209281_1000851 3300027111 Bacteria 26952
77 Ga0209371_1000021 3300027312 Bacteria 555864
78 Ga0209371_1001475 3300027312 Bacteria 15716
79 Ga0209371_1001579 3300027312 Bacteria 14899
80 Ga0209282_1000100 3300027666 Bacteria 59184
81 Ga0209282_1018851 3300027666 Bacteria 4377
82 Ga0307515_10004439 3300028794 Bacteria 29051
83 Ga0268256_1000020 3300030500 Bacteria 557873
84 Ga0268256_1001283 3300030500 Bacteria 15559
85 Ga0265325_10038493 3300031241 Bacteria 2524
86 Ga0307408_100076295 3300031548 Bacteria 2493
87 Ga0315914_1000010 3300031967 Bacteria 171642
88 Ga0315913_1000005 3300033430 Bacteria 171651
89 Ga0315915_1000012 3300033464 Bacteria 199284
90 Ga0395905_0000911 3300037471 Bacteria 38191
91 Ga0395905_0048459 3300037471 Bacteria 3982
92 Ga0436360_0536357 3300039438 Bacteria 4134
93 Ga0436361_0798719 3300039447 Bacteria 2695
94 Ga0436362_1119351 3300039453 Bacteria 2720
95 Ga0439436_0008519 3300041404 Bacteria 3154
96 Ga0466963_0024620 3300044694 Bacteria 3832
97 Ga0495592_0035313 3300046454 Bacteria 3767
98 Ga0495638_0009588 3300046460 Bacteria 6777
99 Ga0495650_0031835 3300046471 Bacteria 2367
100 Ga0495662_0022713 3300046476 Bacteria 3029
101 Ga0495606_0001585 3300046507 Bacteria 29718
102 Ga0495606_0056866 3300046507 Bacteria 2522
103 Ga0495588_0008095 3300046674 Bacteria 4807
104 Ga0495681_0018050 3300047470 Bacteria 3898
105 Ga0495686_0001469 3300047472 Bacteria 25654
106 Ga0496100_0032939 3300048903 Bacteria 3238
107 Ga0496101_0085309 3300048904 Bacteria 2340
108 Ga0496102_0008122 3300048905 Bacteria 8982
109 Ga0496102_0051413 3300048905 Bacteria 3754
110 Ga0496105_0005765 3300048908 Bacteria 9441
111 Ga0496113_0041784 3300048916 Bacteria 3386
112 Ga0496114_0101107 3300048917 Bacteria 2461
113 Ga0496116_0000043 3300048919 Bacteria 328085
114 Ga0496117_0000002 3300048920 Bacteria 2483758
115 Ga0496117_0002626 3300048920 Bacteria 22299
116 Ga0496117_0005373 3300048920 Bacteria 13492
117 Ga0496118_0000355 3300048921 Bacteria 77500
118 Ga0496118_0002908 3300048921 Bacteria 22263
119 Ga0496118_0034372 3300048921 Bacteria 4138
120 Ga0496118_0053970 3300048921 Bacteria 3049
121 Ga0496119_0050083 3300048922 Bacteria 2577
122 Ga0496119_0061443 3300048922 Bacteria 2243
123 Ga0496120_0001026 3300048923 Bacteria 37324
124 Ga0496120_0016804 3300048923 Bacteria 4767
125 Ga0496121_0000001 3300048924 Bacteria 1830318
126 Ga0496121_0006016 3300048924 Bacteria 15306
127 Ga0496121_0040634 3300048924 Bacteria 4077
128 Ga0496122_0000001 3300048925 Bacteria 1827766
129 Ga0496122_0001275 3300048925 Bacteria 41895
130 Ga0496122_0010947 3300048925 Bacteria 9275
131 Ga0496122_0020485 3300048925 Bacteria 5973
132 Ga0496122_0066941 3300048925 Bacteria 2590
133 Ga0496123_0000001 3300048926 Bacteria 1831497
134 Ga0496123_0000043 3300048926 Bacteria 253752
135 Ga0496123_0000947 3300048926 Bacteria 45214
136 Ga0496123_0005835 3300048926 Bacteria 12209
137 Ga0496124_0000112 3300048927 Bacteria 166282
138 Ga0496124_0001805 3300048927 Bacteria 29711
139 Ga0496124_0043861 3300048927 Bacteria 3841
140 Ga0496124_0056484 3300048927 Bacteria 3310
141 Ga0496124_0119767 3300048927 Bacteria 2105
142 Ga0496125_0000001 3300048928 Bacteria 1766138
143 Ga0496125_0000634 3300048928 Bacteria 58798
144 Ga0496125_0012634 3300048928 Bacteria 8360
145 Ga0496125_0027127 3300048928 Bacteria 5199
146 Ga0496125_0032025 3300048928 Bacteria 4677
147 Ga0496125_0034390 3300048928 Bacteria 4468
148 Ga0496126_0000369 3300048929 Bacteria 92814
149 Ga0496126_0001233 3300048929 Bacteria 41528
150 Ga0501033_0008195 3300049570 Bacteria 8094
151 Ga0501035_0000636 3300049822 Bacteria 38713
152 nmdc:mga00v17_6_c1 3300050491 Bacteria 179509
153 nmdc:mga0yw44_9682_c1 3300050492 Bacteria 4890
154 nmdc:mga0k408_51215_c1 3300050493 Bacteria 2392
155 Ga0495601_0038728 3300053077 Bacteria 2982
156 Ga0500607_068275 3300053121 Bacteria 1840
157 Ga0500608_028414 3300053122 Bacteria 2639
158 Ga0500559_0003958 3300053136 Bacteria 7135
159 Ga0500561_0000565 3300053137 Bacteria 5970
160 Ga0500573_0000896 3300053140 Bacteria 13518
161 Ga0500590_000640 3300053148 Bacteria 12491
162 Ga0500616_0001455 3300053153 Bacteria 22611
163 Ga0500622_0000846 3300053156 Bacteria 26191
164 Ga0500624_001747 3300053157 Bacteria 3193
165 Ga0500634_0000621 3300053161 Bacteria 11936
166 Ga0500634_0005437 3300053161 Bacteria 6047

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 3300048925 Ga0496122_0010947 Ga0496122_0010947_1140_2948 538
2 3300027312 Ga0209371_1000021 Ga0209371_100002149 540
3 3300030500 Ga0268256_1000020 Ga0268256_100002055 540
4 3300003856 Ga0058692_1011526 Ga0058692_10115262 541
5 3300053140 Ga0500573_0000896 Ga0500573_0000896_2931_4733 546
6 3300039438 Ga0436360_0536357 Ga0436360_0536357_597_2438 555
7 3300013102 Ga0157371_10016165 Ga0157371_100161654 558
8 3300048919 Ga0496116_0000043 Ga0496116_0000043_81426_83228 558
9 3300048925 Ga0496122_0020485 Ga0496122_0020485_404_2206 558
10 3300048929 Ga0496126_0000369 Ga0496126_0000369_44041_45843 558
11 iso_pu_bacteria 2960637947 2960642241 559
12 3300031241 Ga0265325_10038493 Ga0265325_100384931 566
13 3300039453 Ga0436362_1119351 Ga0436362_1119351_398_2185 572
14 3300028794 Ga0307515_10004439 Ga0307515_100044393 574
15 3300048927 Ga0496124_0000112 Ga0496124_0000112_25487_27295 574
16 3300053122 Ga0500608_028414 Ga0500608_028414_212_2017 574
17 3300048921 Ga0496118_0053970 Ga0496118_0053970_376_2184 577
18 3300006195 Ga0075366_10058420 Ga0075366_100584201 579
19 3300039447 Ga0436361_0798719 Ga0436361_0798719_561_2372 579
20 3300006948 Ga0099826_10031120 Ga0099826_100311203 580
21 3300009148 Ga0105243_10042788 Ga0105243_100427882 580
22 3300013102 Ga0157371_10000015 Ga0157371_10000015104 580
23 3300013104 Ga0157370_10002232 Ga0157370_1000223220 580
24 3300027666 Ga0209282_1018851 Ga0209282_10188513 580
25 3300046674 Ga0495588_0008095 Ga0495588_0008095_1098_2915 580
26 3300047470 Ga0495681_0018050 Ga0495681_0018050_224_2041 580
27 3300048916 Ga0496113_0041784 Ga0496113_0041784_578_2395 580
28 3300048920 Ga0496117_0000002 Ga0496117_0000002_1022268_1024085 580
29 3300048921 Ga0496118_0000355 Ga0496118_0000355_58156_59973 580
30 3300048922 Ga0496119_0050083 Ga0496119_0050083_59_1861 580
31 3300048923 Ga0496120_0001026 Ga0496120_0001026_23475_25292 580
32 3300048925 Ga0496122_0000001 Ga0496122_0000001_328722_330539 580
33 3300048926 Ga0496123_0000001 Ga0496123_0000001_332453_334270 580
34 3300048928 Ga0496125_0000001 Ga0496125_0000001_1395716_1397518 580
35 3300048928 Ga0496125_0032025 Ga0496125_0032025_2821_4623 580
36 3300050491 nmdc:mga00v17_6_c1 nmdc:mga00v17_6_c1_125164_126981 580
37 3300050493 nmdc:mga0k408_51215_c1 nmdc:mga0k408_51215_c1_382_2199 580
38 3300053137 Ga0500561_0000565 Ga0500561_0000565_1383_3200 580
39 3300053157 Ga0500624_001747 Ga0500624_001747_1176_2993 580
40 3300053161 Ga0500634_0005437 Ga0500634_0005437_3304_5121 580
41 3300048921 Ga0496118_0034372 Ga0496118_0034372_1910_3712 581
42 3300048923 Ga0496120_0016804 Ga0496120_0016804_1082_2884 581
43 3300048924 Ga0496121_0000001 Ga0496121_0000001_1236642_1238444 581
44 3300053121 Ga0500607_068275 Ga0500607_068275_17_1819 581
45 3300053161 Ga0500634_0000621 Ga0500634_0000621_3034_4836 581
46 3300046460 Ga0495638_0009588 Ga0495638_0009588_147_1955 582
47 3300003856 Ga0058692_1004094 Ga0058692_10040944 583
48 3300006948 Ga0099826_10041874 Ga0099826_100418743 583
49 3300025284 Ga0209130_1011396 Ga0209130_10113962 583
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52 3300025294 Ga0209025_1000715 Ga0209025_100071519 587
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63 3300053148 Ga0500590_000640 Ga0500590_000640_5927_7729 589
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425 iso_pu_bacteria 2842187318 2842188272 601
426 iso_pu_bacteria 2842211629 2842212583 601
427 iso_pu_bacteria 2842224351 2842225798 601
428 iso_pu_bacteria 2842515876 2842516238 601
429 iso_pu_bacteria 2854896431 2854901994 601
430 iso_pu_bacteria 2899792073 2899796251 601
431 iso_pu_bacteria 2899845264 2899847392 601
432 iso_pu_bacteria 2919114240 2919115254 601
433 iso_pu_bacteria 2919171160 2919175401 601
434 iso_pu_bacteria 2923556063 2923558204 601
435 iso_pu_bacteria 2926754445 2926756302 601
436 iso_pu_bacteria 2926760298 2926760524 601
437 iso_pu_bacteria 2933006813 2933008302 601
438 iso_pu_bacteria 2933011516 2933013119 601
439 iso_pu_bacteria 2979100975 2979106200 601
440 iso_pu_bacteria 2984601300 2984603191 601
441 iso_pu_bacteria 2996887358 2996892375 601
442 iso_pu_bacteria 8003570095 8003571049 601
443 iso_pu_bacteria 8005258706 8005259658 601
444 iso_pu_bacteria 8005321885 8005326902 601
445 iso_pu_bacteria 8056875544 8056877001 601

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF17768

RecJ_OB

RecJ OB domain

551

660

0.96

PF02272

DHHA1

DHHA1 domain

408

536

0.95

PF01368

DHH

DHH family

165

321

0.89

Structural Annotation

Top 5 Hits

ID Description Score Start End
2zxp-assembly1.cif.gz_A crystal structure of recj in complex with mn2+ from thermus thermophilus hb8 0.846 24 601
2zxr-assembly1.cif.gz_A crystal structure of recj in complex with mg2+ from thermus thermophilus hb8 0.8428 24 601
6lrd-assembly1.cif.gz_A structure of recj complexed with a 5'-p-dspacer-modified ssdna 0.8397 34 597
5f54-assembly1.cif.gz_A structure of recj complexed with dtmp 0.8332 34 598
5f56-assembly1.cif.gz_A structure of recj complexed with dna and ssb-ct 0.8208 34 597
ID Description Score Start End Superfamily
af_P21893_50_326_3.90.1640.30 Alpha Beta;Alpha-Beta Complex;inorganic pyrophosphatase (n-terminal core); 0.9618 79 348 3.90.1640.30
af_Q2FXT9_57_316_3.90.1640.30 Alpha Beta;Alpha-Beta Complex;inorganic pyrophosphatase (n-terminal core); 0.9595 77 348 3.90.1640.30
af_Q2FXT9_57_316_3.90.1640.30 Alpha Beta;Alpha-Beta Complex;inorganic pyrophosphatase (n-terminal core); 0.9559 77 348 3.90.1640.30
af_P21893_50_326_3.90.1640.30 Alpha Beta;Alpha-Beta Complex;inorganic pyrophosphatase (n-terminal core); 0.9348 79 348 3.90.1640.30
5f56A02 Alpha Beta;Alpha-Beta Complex;inorganic pyrophosphatase (n-terminal core); 0.9144 75 348 3.90.1640.30
ID Description Score Start End GO Terms
AF-A0A525PBX5-F1-model_v4 Single-stranded-DNA-specific exonuclease RecJ 0.9596 12 308 GO:0004527
AF-A0A090P416-F1-model_v4 deleted 0.9575 76 310
AF-A0A6I1J8B6-F1-model_v4 Single-stranded-DNA-specific exonuclease 0.9558 9 135 GO:0004527
AF-B0YNP9-F1-model_v4 5'-3' exonuclease 0.9547 78 342 GO:0004527
AF-A0A3B8RHK5-F1-model_v4 Single-stranded-DNA-specific exonuclease RecJ 0.9504 85 281 GO:0004527

Feature Viewer

pLDDT pTM Quality
89.99 0.89 High
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Predicted Structure (AlphaFold2)

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